Multiple sequence alignment - TraesCS3B01G017000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G017000 chr3B 100.000 3290 0 0 1 3290 6965996 6969285 0.000000e+00 6076.0
1 TraesCS3B01G017000 chr3B 88.159 1385 137 10 911 2294 6956925 6958283 0.000000e+00 1624.0
2 TraesCS3B01G017000 chr3A 89.496 2380 184 38 905 3259 13852149 13854487 0.000000e+00 2950.0
3 TraesCS3B01G017000 chr3D 89.918 2182 130 28 319 2453 6426562 6424424 0.000000e+00 2728.0
4 TraesCS3B01G017000 chr3D 87.581 1385 145 12 911 2294 6456163 6454805 0.000000e+00 1580.0
5 TraesCS3B01G017000 chr3D 85.269 706 81 13 2567 3260 6423387 6422693 0.000000e+00 706.0
6 TraesCS3B01G017000 chr3D 89.455 275 27 1 34 308 6426922 6426650 2.430000e-91 346.0
7 TraesCS3B01G017000 chr3D 80.952 126 24 0 319 444 21886639 21886764 2.090000e-17 100.0
8 TraesCS3B01G017000 chr3D 83.051 118 12 6 330 446 412076699 412076809 2.090000e-17 100.0
9 TraesCS3B01G017000 chr7D 84.960 1383 170 20 913 2294 40118701 40120046 0.000000e+00 1367.0
10 TraesCS3B01G017000 chr7D 77.449 439 62 23 482 894 85204398 85204825 9.180000e-56 228.0
11 TraesCS3B01G017000 chr7D 79.000 200 40 2 2080 2278 88142670 88142472 5.730000e-28 135.0
12 TraesCS3B01G017000 chr7D 90.385 52 4 1 582 633 491153011 491153061 2.120000e-07 67.6
13 TraesCS3B01G017000 chr2D 83.886 422 59 6 2531 2943 602132881 602132460 8.560000e-106 394.0
14 TraesCS3B01G017000 chr2D 83.175 422 62 6 2531 2943 602106284 602105863 8.620000e-101 377.0
15 TraesCS3B01G017000 chr2D 81.752 137 20 3 319 452 596210787 596210921 3.470000e-20 110.0
16 TraesCS3B01G017000 chr2D 81.818 121 21 1 329 448 399899916 399900036 2.090000e-17 100.0
17 TraesCS3B01G017000 chr1B 85.175 371 44 8 2585 2945 679234402 679234033 1.440000e-98 370.0
18 TraesCS3B01G017000 chr1B 79.394 165 26 7 319 478 137141592 137141431 3.470000e-20 110.0
19 TraesCS3B01G017000 chr2A 82.353 425 62 10 2531 2944 69301456 69301034 1.120000e-94 357.0
20 TraesCS3B01G017000 chrUn 81.967 427 68 4 2527 2945 344216353 344215928 1.450000e-93 353.0
21 TraesCS3B01G017000 chr5B 81.967 427 68 4 2527 2945 15277898 15277473 1.450000e-93 353.0
22 TraesCS3B01G017000 chr1A 81.733 427 67 8 2526 2944 538801342 538801765 2.430000e-91 346.0
23 TraesCS3B01G017000 chr5D 82.353 357 51 9 2598 2943 520768715 520768360 1.920000e-77 300.0
24 TraesCS3B01G017000 chr7B 87.259 259 32 1 2688 2945 640507535 640507793 8.930000e-76 294.0
25 TraesCS3B01G017000 chr7B 79.500 200 39 2 2080 2278 37600888 37601086 1.230000e-29 141.0
26 TraesCS3B01G017000 chr7B 73.077 416 92 15 1134 1544 666554718 666554318 2.660000e-26 130.0
27 TraesCS3B01G017000 chr7A 87.023 131 16 1 319 448 538342138 538342008 2.650000e-31 147.0
28 TraesCS3B01G017000 chr7A 78.500 200 39 4 2080 2277 89809282 89809085 9.580000e-26 128.0
29 TraesCS3B01G017000 chr6D 85.047 107 15 1 319 425 388411195 388411300 1.250000e-19 108.0
30 TraesCS3B01G017000 chr6D 80.000 120 12 6 679 797 130040658 130040766 9.790000e-11 78.7
31 TraesCS3B01G017000 chr5A 81.890 127 19 3 327 452 429006746 429006869 1.610000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G017000 chr3B 6965996 6969285 3289 False 6076 6076 100.000 1 3290 1 chr3B.!!$F2 3289
1 TraesCS3B01G017000 chr3B 6956925 6958283 1358 False 1624 1624 88.159 911 2294 1 chr3B.!!$F1 1383
2 TraesCS3B01G017000 chr3A 13852149 13854487 2338 False 2950 2950 89.496 905 3259 1 chr3A.!!$F1 2354
3 TraesCS3B01G017000 chr3D 6454805 6456163 1358 True 1580 1580 87.581 911 2294 1 chr3D.!!$R1 1383
4 TraesCS3B01G017000 chr3D 6422693 6426922 4229 True 1260 2728 88.214 34 3260 3 chr3D.!!$R2 3226
5 TraesCS3B01G017000 chr7D 40118701 40120046 1345 False 1367 1367 84.960 913 2294 1 chr7D.!!$F1 1381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.034059 GCAGTAGTATCCCAGCGCAT 59.966 55.0 11.47 0.00 0.00 4.73 F
393 471 0.036010 ATGCCAGTTCAACCTCTCGG 60.036 55.0 0.00 0.00 0.00 4.63 F
443 521 0.177836 TGCGTCCATATGGGTGAGTG 59.822 55.0 21.78 6.66 38.11 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1787 0.108992 TGATGTCGAGGTTGGCGTAC 60.109 55.0 0.00 0.00 0.00 3.67 R
2065 2202 0.229753 GTCACGAACAGAGCGTTGTG 59.770 55.0 0.00 0.00 40.44 3.33 R
2306 2443 0.317854 TAGCTTCGCACCGATCGATG 60.318 55.0 18.66 11.93 35.23 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.954296 GATTACATGATGTTATGGCAGCT 57.046 39.130 2.29 0.00 32.32 4.24
23 24 6.323203 GATTACATGATGTTATGGCAGCTT 57.677 37.500 2.29 0.00 32.32 3.74
24 25 6.720112 ATTACATGATGTTATGGCAGCTTT 57.280 33.333 2.29 0.00 32.32 3.51
25 26 6.528537 TTACATGATGTTATGGCAGCTTTT 57.471 33.333 2.29 0.00 32.32 2.27
26 27 7.637631 TTACATGATGTTATGGCAGCTTTTA 57.362 32.000 2.29 0.00 32.32 1.52
27 28 6.528537 ACATGATGTTATGGCAGCTTTTAA 57.471 33.333 0.00 0.00 32.32 1.52
28 29 7.116075 ACATGATGTTATGGCAGCTTTTAAT 57.884 32.000 0.00 0.00 32.32 1.40
29 30 7.558604 ACATGATGTTATGGCAGCTTTTAATT 58.441 30.769 0.00 0.00 32.32 1.40
30 31 7.493320 ACATGATGTTATGGCAGCTTTTAATTG 59.507 33.333 0.00 0.00 32.32 2.32
31 32 6.339730 TGATGTTATGGCAGCTTTTAATTGG 58.660 36.000 0.00 0.00 0.00 3.16
32 33 5.736951 TGTTATGGCAGCTTTTAATTGGT 57.263 34.783 0.00 0.00 0.00 3.67
33 34 5.719173 TGTTATGGCAGCTTTTAATTGGTC 58.281 37.500 0.00 0.00 0.00 4.02
34 35 3.508744 ATGGCAGCTTTTAATTGGTCG 57.491 42.857 0.00 0.00 0.00 4.79
35 36 1.543802 TGGCAGCTTTTAATTGGTCGG 59.456 47.619 0.00 0.00 0.00 4.79
36 37 1.544246 GGCAGCTTTTAATTGGTCGGT 59.456 47.619 0.00 0.00 0.00 4.69
47 48 1.081462 TGGTCGGTCCACCCCTATT 59.919 57.895 7.72 0.00 41.93 1.73
62 63 3.515602 CCTATTGAATTCAGGGAGGGG 57.484 52.381 18.19 9.58 0.00 4.79
63 64 3.056080 CCTATTGAATTCAGGGAGGGGA 58.944 50.000 18.19 0.72 0.00 4.81
77 78 3.239449 GGAGGGGATGTTTGGAAGTTTT 58.761 45.455 0.00 0.00 0.00 2.43
84 85 5.163353 GGGATGTTTGGAAGTTTTGAAGGAA 60.163 40.000 0.00 0.00 0.00 3.36
97 98 7.347252 AGTTTTGAAGGAACCTATAGAATCCC 58.653 38.462 16.03 6.34 32.15 3.85
119 120 5.169295 CCCATAAAAGCCTATACGTCTAGC 58.831 45.833 0.00 0.00 0.00 3.42
127 128 4.511826 AGCCTATACGTCTAGCATTTTTGC 59.488 41.667 0.00 0.00 0.00 3.68
128 129 4.319549 GCCTATACGTCTAGCATTTTTGCC 60.320 45.833 0.00 0.00 34.90 4.52
129 130 4.814234 CCTATACGTCTAGCATTTTTGCCA 59.186 41.667 0.00 0.00 34.90 4.92
130 131 4.882671 ATACGTCTAGCATTTTTGCCAG 57.117 40.909 0.00 0.00 34.90 4.85
131 132 1.200020 ACGTCTAGCATTTTTGCCAGC 59.800 47.619 0.00 0.00 34.90 4.85
139 140 2.768698 CATTTTTGCCAGCCATGTCAA 58.231 42.857 0.00 0.00 0.00 3.18
140 141 3.340034 CATTTTTGCCAGCCATGTCAAT 58.660 40.909 0.00 0.00 0.00 2.57
219 220 0.321671 TTCTTTCCTCCAGGTCGCAG 59.678 55.000 0.00 0.00 36.34 5.18
226 227 1.229082 TCCAGGTCGCAGGTAAGGT 60.229 57.895 0.00 0.00 0.00 3.50
243 244 3.252554 AGGTGAGCCCCAAATAACAAA 57.747 42.857 0.00 0.00 34.57 2.83
244 245 2.897326 AGGTGAGCCCCAAATAACAAAC 59.103 45.455 0.00 0.00 34.57 2.93
258 259 9.319143 CCAAATAACAAACCATCAACTTTTACA 57.681 29.630 0.00 0.00 0.00 2.41
310 311 4.741647 GGGGGCAGTAGTATCCCA 57.258 61.111 8.78 0.00 41.85 4.37
312 313 1.755384 GGGGCAGTAGTATCCCAGC 59.245 63.158 8.78 0.00 41.85 4.85
313 314 1.367840 GGGCAGTAGTATCCCAGCG 59.632 63.158 2.90 0.00 39.82 5.18
314 315 1.301009 GGCAGTAGTATCCCAGCGC 60.301 63.158 0.00 0.00 0.00 5.92
315 316 1.441729 GCAGTAGTATCCCAGCGCA 59.558 57.895 11.47 0.00 0.00 6.09
316 317 0.034059 GCAGTAGTATCCCAGCGCAT 59.966 55.000 11.47 0.00 0.00 4.73
317 318 1.937108 GCAGTAGTATCCCAGCGCATC 60.937 57.143 11.47 0.00 0.00 3.91
324 402 2.635229 ATCCCAGCGCATCAGACGTC 62.635 60.000 11.47 7.70 0.00 4.34
325 403 2.887568 CCAGCGCATCAGACGTCC 60.888 66.667 13.01 0.00 0.00 4.79
327 405 4.148825 AGCGCATCAGACGTCCCC 62.149 66.667 13.01 0.00 0.00 4.81
350 428 1.536149 GACTACGATGCGTCTGTGAC 58.464 55.000 4.05 0.00 41.54 3.67
392 470 2.544685 CTATGCCAGTTCAACCTCTCG 58.455 52.381 0.00 0.00 0.00 4.04
393 471 0.036010 ATGCCAGTTCAACCTCTCGG 60.036 55.000 0.00 0.00 0.00 4.63
396 474 2.009042 GCCAGTTCAACCTCTCGGATG 61.009 57.143 0.00 0.00 34.59 3.51
406 484 1.271934 CCTCTCGGATGTGCTCATAGG 59.728 57.143 0.32 0.86 34.06 2.57
407 485 1.271934 CTCTCGGATGTGCTCATAGGG 59.728 57.143 0.32 0.00 34.06 3.53
412 490 3.092301 CGGATGTGCTCATAGGGATAGA 58.908 50.000 0.32 0.00 34.06 1.98
413 491 3.130164 CGGATGTGCTCATAGGGATAGAG 59.870 52.174 0.32 0.00 34.06 2.43
418 496 2.630098 TGCTCATAGGGATAGAGTGTGC 59.370 50.000 0.00 0.00 0.00 4.57
419 497 2.630098 GCTCATAGGGATAGAGTGTGCA 59.370 50.000 0.00 0.00 31.69 4.57
443 521 0.177836 TGCGTCCATATGGGTGAGTG 59.822 55.000 21.78 6.66 38.11 3.51
451 529 3.320626 CATATGGGTGAGTGTATGAGCG 58.679 50.000 0.00 0.00 0.00 5.03
464 542 2.370281 ATGAGCGACTTCGATTGTGT 57.630 45.000 2.02 0.00 43.02 3.72
466 544 2.479837 TGAGCGACTTCGATTGTGTTT 58.520 42.857 2.02 0.00 43.02 2.83
471 549 4.271533 AGCGACTTCGATTGTGTTTTGTTA 59.728 37.500 2.02 0.00 43.02 2.41
579 682 0.606673 AAGGAAGAAAGAGCCGCACC 60.607 55.000 0.00 0.00 0.00 5.01
610 713 2.028020 CCGGAGAGGCTACCCAATTATC 60.028 54.545 0.00 0.00 0.00 1.75
611 714 2.900546 CGGAGAGGCTACCCAATTATCT 59.099 50.000 5.63 0.00 0.00 1.98
614 717 5.187967 CGGAGAGGCTACCCAATTATCTATT 59.812 44.000 5.63 0.00 0.00 1.73
638 754 2.122054 TTTCGGGTGGGGGTGGTA 60.122 61.111 0.00 0.00 0.00 3.25
647 763 0.474079 TGGGGGTGGTAGTGCACTTA 60.474 55.000 27.06 9.40 0.00 2.24
667 783 0.747852 GCCGGAGAAAAACCCAAACA 59.252 50.000 5.05 0.00 0.00 2.83
678 794 2.520741 CCAAACACGGGTGGGCTT 60.521 61.111 0.00 0.00 34.19 4.35
691 807 2.427753 GGCTTAGAGGGATGGCCG 59.572 66.667 0.00 0.00 33.30 6.13
707 823 4.065281 CGGGGGCGACGAAAGACT 62.065 66.667 0.00 0.00 0.00 3.24
729 845 3.572222 GTGGGGGTGGTTCCGGAA 61.572 66.667 14.35 14.35 37.00 4.30
732 848 2.035155 GGGGTGGTTCCGGAAAGG 59.965 66.667 20.79 0.00 42.97 3.11
733 849 2.035155 GGGTGGTTCCGGAAAGGG 59.965 66.667 20.79 0.00 41.52 3.95
734 850 2.675423 GGTGGTTCCGGAAAGGGC 60.675 66.667 20.79 6.18 41.52 5.19
735 851 3.053896 GTGGTTCCGGAAAGGGCG 61.054 66.667 20.79 0.00 41.52 6.13
736 852 4.338710 TGGTTCCGGAAAGGGCGG 62.339 66.667 20.79 0.00 41.52 6.13
805 921 1.953017 CGGTTCCGCCAATGAAACA 59.047 52.632 0.00 0.00 36.97 2.83
818 934 1.814429 TGAAACACTGGGAGGAGGAA 58.186 50.000 0.00 0.00 0.00 3.36
833 949 1.630878 GAGGAAGAAGAAGAAGGGCCA 59.369 52.381 6.18 0.00 0.00 5.36
839 955 0.853530 AAGAAGAAGGGCCACTGGTT 59.146 50.000 6.18 0.00 0.00 3.67
842 958 0.468029 AAGAAGGGCCACTGGTTGTG 60.468 55.000 6.18 0.00 45.80 3.33
865 983 6.419413 GTGATCTTCATCCAACGTCTAGAATC 59.581 42.308 0.00 0.00 0.00 2.52
875 993 5.332707 CAACGTCTAGAATCAATCGACTGA 58.667 41.667 0.00 0.00 0.00 3.41
886 1004 4.002982 TCAATCGACTGACCCAATTTCAG 58.997 43.478 0.00 4.42 45.21 3.02
1023 1142 2.232941 GAGGGTAATCGTGACCAAGTCA 59.767 50.000 0.00 0.00 40.50 3.41
1060 1179 3.733960 CGTCGACGGAGCAGTCCA 61.734 66.667 29.70 0.00 44.18 4.02
1061 1180 2.126424 GTCGACGGAGCAGTCCAC 60.126 66.667 0.00 0.00 44.18 4.02
1062 1181 3.733960 TCGACGGAGCAGTCCACG 61.734 66.667 0.00 0.00 44.18 4.94
1180 1311 2.892425 CCGCCGAGACCATCAAGC 60.892 66.667 0.00 0.00 0.00 4.01
1305 1436 3.723348 GAGTTCGTGGCCGCAACC 61.723 66.667 18.18 9.83 0.00 3.77
1596 1727 3.474570 GACCAGCTCCTGCCGGAT 61.475 66.667 5.05 0.00 39.03 4.18
1626 1757 2.269529 GGCCGCCGCTATAGAGAGT 61.270 63.158 3.21 0.00 34.44 3.24
1656 1787 1.378250 CCAGCTGAAGCCCAAGGAG 60.378 63.158 17.39 0.00 43.38 3.69
1663 1794 2.180159 GAAGCCCAAGGAGTACGCCA 62.180 60.000 18.53 0.00 0.00 5.69
1685 1816 3.179265 CGACATCACCGTGCCGAC 61.179 66.667 0.00 0.00 0.00 4.79
2005 2136 3.329889 AGATGCCGGCCACCTTCA 61.330 61.111 26.77 2.60 0.00 3.02
2023 2157 2.605257 TCACCGGAGAAGGAGAAGAAA 58.395 47.619 9.46 0.00 34.73 2.52
2065 2202 4.373116 TGGAGACGCTGTTCGGGC 62.373 66.667 0.00 0.00 43.86 6.13
2073 2210 2.972505 CTGTTCGGGCACAACGCT 60.973 61.111 0.00 0.00 41.91 5.07
2294 2431 1.071471 CCAAGTTCACCTGACCGCT 59.929 57.895 0.00 0.00 0.00 5.52
2319 2456 2.622629 CTTGCATCGATCGGTGCG 59.377 61.111 39.12 26.58 44.11 5.34
2363 2504 3.864921 GCTGTACTGTTTGGTCCTAGTGG 60.865 52.174 1.46 0.00 0.00 4.00
2364 2505 2.635915 TGTACTGTTTGGTCCTAGTGGG 59.364 50.000 0.00 0.00 0.00 4.61
2365 2506 1.064825 ACTGTTTGGTCCTAGTGGGG 58.935 55.000 0.00 0.00 35.33 4.96
2366 2507 1.064825 CTGTTTGGTCCTAGTGGGGT 58.935 55.000 0.00 0.00 35.33 4.95
2367 2508 2.262637 CTGTTTGGTCCTAGTGGGGTA 58.737 52.381 0.00 0.00 35.33 3.69
2368 2509 1.980036 TGTTTGGTCCTAGTGGGGTAC 59.020 52.381 0.00 0.00 35.33 3.34
2369 2510 2.263545 GTTTGGTCCTAGTGGGGTACT 58.736 52.381 0.00 0.00 43.56 2.73
2370 2511 2.235650 GTTTGGTCCTAGTGGGGTACTC 59.764 54.545 0.00 0.00 40.89 2.59
2371 2512 1.390287 TGGTCCTAGTGGGGTACTCT 58.610 55.000 0.00 0.00 40.89 3.24
2460 2601 8.672815 TGATTGTATCACTCGAAATTGCATTTA 58.327 29.630 0.00 0.00 33.59 1.40
2472 2613 9.528018 TCGAAATTGCATTTAAGAGTTTCTTTT 57.472 25.926 0.00 0.00 37.89 2.27
2529 2675 6.930731 TGTTATAGGCCTTTGTTTCCATTTC 58.069 36.000 12.58 0.00 0.00 2.17
2531 2677 7.234577 TGTTATAGGCCTTTGTTTCCATTTCTT 59.765 33.333 12.58 0.00 0.00 2.52
2533 2679 4.960938 AGGCCTTTGTTTCCATTTCTTTC 58.039 39.130 0.00 0.00 0.00 2.62
2564 2710 7.502177 ACACGTGTAACTTTATTCATACTCG 57.498 36.000 21.98 0.00 39.65 4.18
2565 2711 6.034256 ACACGTGTAACTTTATTCATACTCGC 59.966 38.462 21.98 0.00 38.24 5.03
2574 3677 8.542497 ACTTTATTCATACTCGCAACAGTTAA 57.458 30.769 0.00 0.00 0.00 2.01
2582 3685 4.444536 ACTCGCAACAGTTAAAGGTACAA 58.555 39.130 0.00 0.00 0.00 2.41
2584 3687 6.225318 ACTCGCAACAGTTAAAGGTACAATA 58.775 36.000 0.00 0.00 0.00 1.90
2589 3692 9.187455 CGCAACAGTTAAAGGTACAATAATTTT 57.813 29.630 0.00 0.00 0.00 1.82
2620 3723 8.934023 AAGATCCAAGGAAATACAAAGTAACA 57.066 30.769 0.00 0.00 0.00 2.41
2676 3779 2.032620 ACTCCTTCTTCGCGGTATCAT 58.967 47.619 6.13 0.00 0.00 2.45
2677 3780 2.034812 ACTCCTTCTTCGCGGTATCATC 59.965 50.000 6.13 0.00 0.00 2.92
2678 3781 2.294791 CTCCTTCTTCGCGGTATCATCT 59.705 50.000 6.13 0.00 0.00 2.90
2679 3782 2.293677 TCCTTCTTCGCGGTATCATCTC 59.706 50.000 6.13 0.00 0.00 2.75
2680 3783 2.294791 CCTTCTTCGCGGTATCATCTCT 59.705 50.000 6.13 0.00 0.00 3.10
2681 3784 3.304257 CTTCTTCGCGGTATCATCTCTG 58.696 50.000 6.13 0.00 0.00 3.35
2682 3785 2.298610 TCTTCGCGGTATCATCTCTGT 58.701 47.619 6.13 0.00 0.00 3.41
2683 3786 2.688446 TCTTCGCGGTATCATCTCTGTT 59.312 45.455 6.13 0.00 0.00 3.16
2684 3787 2.776312 TCGCGGTATCATCTCTGTTC 57.224 50.000 6.13 0.00 0.00 3.18
2685 3788 1.002792 TCGCGGTATCATCTCTGTTCG 60.003 52.381 6.13 0.00 0.00 3.95
2686 3789 1.002792 CGCGGTATCATCTCTGTTCGA 60.003 52.381 0.00 0.00 0.00 3.71
2698 3808 3.383505 TCTCTGTTCGAACTCCAAAGACA 59.616 43.478 27.32 7.97 0.00 3.41
2705 3815 3.256383 TCGAACTCCAAAGACATCGGTAA 59.744 43.478 0.00 0.00 31.99 2.85
2722 3835 3.309954 CGGTAAAGAGGCTGCAATTAGAC 59.690 47.826 0.50 0.00 0.00 2.59
2746 3859 3.545633 GAGCAACGATGTTGTCACTTTC 58.454 45.455 10.96 0.00 0.00 2.62
2755 3868 0.878523 TTGTCACTTTCTCACCGGCG 60.879 55.000 0.00 0.00 0.00 6.46
2760 3873 2.047655 TTTCTCACCGGCGCGAAT 60.048 55.556 12.10 0.00 0.00 3.34
2771 3884 2.933906 CCGGCGCGAATATTACCAATAT 59.066 45.455 12.10 0.00 35.64 1.28
2774 3887 4.095610 GGCGCGAATATTACCAATATTGC 58.904 43.478 12.10 10.43 42.53 3.56
2796 3909 5.167845 GCTTTTTGAAAACACCTTGAGTCA 58.832 37.500 0.00 0.00 0.00 3.41
2797 3910 5.062183 GCTTTTTGAAAACACCTTGAGTCAC 59.938 40.000 0.00 0.00 0.00 3.67
2826 3939 6.947733 TCTAAAAAGATGGAAAGCCTTGATCA 59.052 34.615 0.00 0.00 34.31 2.92
2833 3946 3.191162 TGGAAAGCCTTGATCAATGAACG 59.809 43.478 14.16 0.10 34.31 3.95
2835 3948 4.394920 GGAAAGCCTTGATCAATGAACGTA 59.605 41.667 14.16 0.00 0.00 3.57
2838 3953 6.515272 AAGCCTTGATCAATGAACGTATTT 57.485 33.333 14.16 0.00 0.00 1.40
2840 3955 5.415701 AGCCTTGATCAATGAACGTATTTGT 59.584 36.000 14.16 0.00 0.00 2.83
2854 3969 1.221635 ATTTGTCCGGGGATGATCCA 58.778 50.000 14.36 0.00 38.64 3.41
2869 3984 5.010213 GGATGATCCACTAGAAGTACAGGTC 59.990 48.000 6.60 0.00 36.28 3.85
2872 3987 3.341823 TCCACTAGAAGTACAGGTCGTC 58.658 50.000 0.00 0.00 0.00 4.20
2880 3995 2.156917 AGTACAGGTCGTCGAATCACA 58.843 47.619 0.00 0.00 0.00 3.58
2890 4005 5.051641 GGTCGTCGAATCACAATATCTTCAC 60.052 44.000 0.00 0.00 0.00 3.18
2898 4013 6.570672 ATCACAATATCTTCACCATGATGC 57.429 37.500 0.00 0.00 0.00 3.91
2907 4022 2.291365 TCACCATGATGCCGATGAAAG 58.709 47.619 0.00 0.00 0.00 2.62
2912 4027 5.008911 CACCATGATGCCGATGAAAGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
2917 4032 5.296780 TGATGCCGATGAAAGATTTAACCTC 59.703 40.000 0.00 0.00 0.00 3.85
2932 4047 8.579863 AGATTTAACCTCCACAAAGAATCAAAG 58.420 33.333 0.00 0.00 0.00 2.77
2971 4086 5.586643 GGATGTACAATTGGAGGAAGAAGAC 59.413 44.000 10.83 0.00 0.00 3.01
2974 4089 3.931578 ACAATTGGAGGAAGAAGACGAG 58.068 45.455 10.83 0.00 0.00 4.18
2981 4096 4.882427 TGGAGGAAGAAGACGAGTAGTATG 59.118 45.833 0.00 0.00 0.00 2.39
2984 4099 6.439675 AGGAAGAAGACGAGTAGTATGTTC 57.560 41.667 0.00 0.00 0.00 3.18
2988 4103 7.813627 GGAAGAAGACGAGTAGTATGTTCTTTT 59.186 37.037 7.49 0.00 37.48 2.27
3031 4146 3.200483 GGTTGTTCTACGTCCAGTTGTT 58.800 45.455 0.00 0.00 0.00 2.83
3032 4147 3.001939 GGTTGTTCTACGTCCAGTTGTTG 59.998 47.826 0.00 0.00 0.00 3.33
3036 4151 4.202172 TGTTCTACGTCCAGTTGTTGATCA 60.202 41.667 0.00 0.00 0.00 2.92
3048 4163 4.578928 AGTTGTTGATCATTTATACCGGCC 59.421 41.667 0.00 0.00 0.00 6.13
3057 4172 5.956642 TCATTTATACCGGCCTTTGTTTTC 58.043 37.500 0.00 0.00 0.00 2.29
3070 4185 7.763985 CGGCCTTTGTTTTCCTTGATATTAATT 59.236 33.333 0.00 0.00 0.00 1.40
3102 4217 2.645297 TGCCCTATGGGTGTCTTTGTTA 59.355 45.455 4.42 0.00 46.51 2.41
3137 4253 0.614697 ACATTGCTAAAGGTGCCCCC 60.615 55.000 0.00 0.00 0.00 5.40
3167 4283 7.394816 CCCTCTCTCAAAGGTTGTTTCTATAA 58.605 38.462 0.00 0.00 31.51 0.98
3199 4315 2.897271 TGTAGTGCATTTGGGGATGT 57.103 45.000 0.00 0.00 0.00 3.06
3237 4355 3.181493 GCATTTGCTCCTACATGAACAGG 60.181 47.826 0.00 2.92 38.21 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.954296 AGCTGCCATAACATCATGTAATC 57.046 39.130 0.00 0.00 0.00 1.75
1 2 6.720112 AAAGCTGCCATAACATCATGTAAT 57.280 33.333 0.00 0.00 0.00 1.89
2 3 6.528537 AAAAGCTGCCATAACATCATGTAA 57.471 33.333 0.00 0.00 0.00 2.41
3 4 7.637631 TTAAAAGCTGCCATAACATCATGTA 57.362 32.000 0.00 0.00 0.00 2.29
4 5 6.528537 TTAAAAGCTGCCATAACATCATGT 57.471 33.333 0.00 0.00 0.00 3.21
5 6 7.042321 CCAATTAAAAGCTGCCATAACATCATG 60.042 37.037 0.00 0.00 0.00 3.07
6 7 6.987992 CCAATTAAAAGCTGCCATAACATCAT 59.012 34.615 0.00 0.00 0.00 2.45
7 8 6.070881 ACCAATTAAAAGCTGCCATAACATCA 60.071 34.615 0.00 0.00 0.00 3.07
8 9 6.340522 ACCAATTAAAAGCTGCCATAACATC 58.659 36.000 0.00 0.00 0.00 3.06
9 10 6.298441 ACCAATTAAAAGCTGCCATAACAT 57.702 33.333 0.00 0.00 0.00 2.71
10 11 5.621104 CGACCAATTAAAAGCTGCCATAACA 60.621 40.000 0.00 0.00 0.00 2.41
11 12 4.798387 CGACCAATTAAAAGCTGCCATAAC 59.202 41.667 0.00 0.00 0.00 1.89
12 13 4.142271 CCGACCAATTAAAAGCTGCCATAA 60.142 41.667 0.00 0.00 0.00 1.90
13 14 3.380004 CCGACCAATTAAAAGCTGCCATA 59.620 43.478 0.00 0.00 0.00 2.74
14 15 2.166254 CCGACCAATTAAAAGCTGCCAT 59.834 45.455 0.00 0.00 0.00 4.40
15 16 1.543802 CCGACCAATTAAAAGCTGCCA 59.456 47.619 0.00 0.00 0.00 4.92
16 17 1.544246 ACCGACCAATTAAAAGCTGCC 59.456 47.619 0.00 0.00 0.00 4.85
17 18 2.415491 GGACCGACCAATTAAAAGCTGC 60.415 50.000 0.00 0.00 38.79 5.25
18 19 2.817258 TGGACCGACCAATTAAAAGCTG 59.183 45.455 0.00 0.00 46.75 4.24
19 20 3.149005 TGGACCGACCAATTAAAAGCT 57.851 42.857 0.00 0.00 46.75 3.74
30 31 0.979187 TCAATAGGGGTGGACCGACC 60.979 60.000 4.91 4.91 41.60 4.79
31 32 0.906775 TTCAATAGGGGTGGACCGAC 59.093 55.000 0.00 0.00 41.60 4.79
32 33 1.887797 ATTCAATAGGGGTGGACCGA 58.112 50.000 0.00 0.00 41.60 4.69
33 34 2.092646 TGAATTCAATAGGGGTGGACCG 60.093 50.000 5.45 0.00 41.60 4.79
34 35 3.555966 CTGAATTCAATAGGGGTGGACC 58.444 50.000 9.88 0.00 39.11 4.46
35 36 3.555966 CCTGAATTCAATAGGGGTGGAC 58.444 50.000 9.88 0.00 0.00 4.02
36 37 2.513738 CCCTGAATTCAATAGGGGTGGA 59.486 50.000 19.23 0.00 46.05 4.02
45 46 2.861317 ACATCCCCTCCCTGAATTCAAT 59.139 45.455 9.88 0.00 0.00 2.57
47 48 1.985622 ACATCCCCTCCCTGAATTCA 58.014 50.000 8.12 8.12 0.00 2.57
62 63 5.753438 GGTTCCTTCAAAACTTCCAAACATC 59.247 40.000 0.00 0.00 0.00 3.06
63 64 5.425217 AGGTTCCTTCAAAACTTCCAAACAT 59.575 36.000 0.00 0.00 0.00 2.71
77 78 4.903149 TGGGGATTCTATAGGTTCCTTCA 58.097 43.478 16.64 13.47 0.00 3.02
84 85 5.857845 AGGCTTTTATGGGGATTCTATAGGT 59.142 40.000 0.00 0.00 0.00 3.08
97 98 5.779922 TGCTAGACGTATAGGCTTTTATGG 58.220 41.667 18.26 0.00 40.13 2.74
119 120 2.459060 TGACATGGCTGGCAAAAATG 57.541 45.000 8.35 4.39 37.50 2.32
127 128 5.303589 AGGATTATTGAATTGACATGGCTGG 59.696 40.000 0.00 0.00 0.00 4.85
128 129 6.401047 AGGATTATTGAATTGACATGGCTG 57.599 37.500 0.00 0.00 0.00 4.85
129 130 7.446625 GTCTAGGATTATTGAATTGACATGGCT 59.553 37.037 0.00 0.00 0.00 4.75
130 131 7.308830 GGTCTAGGATTATTGAATTGACATGGC 60.309 40.741 0.00 0.00 0.00 4.40
131 132 7.941238 AGGTCTAGGATTATTGAATTGACATGG 59.059 37.037 0.00 0.00 0.00 3.66
192 193 6.583562 CGACCTGGAGGAAAGAATTATAGTT 58.416 40.000 0.00 0.00 38.94 2.24
212 213 1.448013 GCTCACCTTACCTGCGACC 60.448 63.158 0.00 0.00 0.00 4.79
219 220 3.021695 GTTATTTGGGGCTCACCTTACC 58.978 50.000 0.00 0.00 40.03 2.85
226 227 2.964209 TGGTTTGTTATTTGGGGCTCA 58.036 42.857 0.00 0.00 0.00 4.26
243 244 9.295825 TCTTCAATGTATGTAAAAGTTGATGGT 57.704 29.630 0.00 0.00 0.00 3.55
271 272 1.198713 ACACCCAATTTGTTGGCACA 58.801 45.000 1.67 0.00 40.74 4.57
297 298 0.034059 ATGCGCTGGGATACTACTGC 59.966 55.000 9.73 0.00 0.00 4.40
301 302 1.613925 GTCTGATGCGCTGGGATACTA 59.386 52.381 9.73 0.00 0.00 1.82
302 303 0.390860 GTCTGATGCGCTGGGATACT 59.609 55.000 9.73 0.00 0.00 2.12
308 309 2.887568 GGACGTCTGATGCGCTGG 60.888 66.667 16.46 0.00 0.00 4.85
309 310 2.887568 GGGACGTCTGATGCGCTG 60.888 66.667 16.46 0.00 0.00 5.18
310 311 4.148825 GGGGACGTCTGATGCGCT 62.149 66.667 16.46 0.00 0.00 5.92
392 470 4.081752 CACTCTATCCCTATGAGCACATCC 60.082 50.000 0.00 0.00 37.87 3.51
393 471 4.526262 ACACTCTATCCCTATGAGCACATC 59.474 45.833 0.00 0.00 37.87 3.06
396 474 3.553922 GCACACTCTATCCCTATGAGCAC 60.554 52.174 0.00 0.00 0.00 4.40
418 496 0.524414 CCCATATGGACGCATGCATG 59.476 55.000 24.00 22.70 37.47 4.06
419 497 0.111061 ACCCATATGGACGCATGCAT 59.889 50.000 24.00 0.36 40.49 3.96
443 521 3.179830 ACACAATCGAAGTCGCTCATAC 58.820 45.455 0.00 0.00 39.60 2.39
601 704 7.039993 CCCGAAACCCTAAAATAGATAATTGGG 60.040 40.741 0.00 0.00 35.38 4.12
604 707 7.504574 CCACCCGAAACCCTAAAATAGATAATT 59.495 37.037 0.00 0.00 0.00 1.40
610 713 3.284617 CCCACCCGAAACCCTAAAATAG 58.715 50.000 0.00 0.00 0.00 1.73
611 714 2.025131 CCCCACCCGAAACCCTAAAATA 60.025 50.000 0.00 0.00 0.00 1.40
614 717 1.769006 CCCCACCCGAAACCCTAAA 59.231 57.895 0.00 0.00 0.00 1.85
638 754 0.685097 TTTCTCCGGCTAAGTGCACT 59.315 50.000 15.25 15.25 45.15 4.40
647 763 1.037493 GTTTGGGTTTTTCTCCGGCT 58.963 50.000 0.00 0.00 0.00 5.52
667 783 2.547123 ATCCCTCTAAGCCCACCCGT 62.547 60.000 0.00 0.00 0.00 5.28
677 793 2.447765 CCCCGGCCATCCCTCTAA 60.448 66.667 2.24 0.00 0.00 2.10
678 794 4.574614 CCCCCGGCCATCCCTCTA 62.575 72.222 2.24 0.00 0.00 2.43
691 807 2.434359 CAGTCTTTCGTCGCCCCC 60.434 66.667 0.00 0.00 0.00 5.40
796 912 2.040278 TCCTCCTCCCAGTGTTTCATTG 59.960 50.000 0.00 0.00 0.00 2.82
797 913 2.348472 TCCTCCTCCCAGTGTTTCATT 58.652 47.619 0.00 0.00 0.00 2.57
798 914 2.044793 TCCTCCTCCCAGTGTTTCAT 57.955 50.000 0.00 0.00 0.00 2.57
801 917 2.118403 TCTTCCTCCTCCCAGTGTTT 57.882 50.000 0.00 0.00 0.00 2.83
803 919 1.150135 TCTTCTTCCTCCTCCCAGTGT 59.850 52.381 0.00 0.00 0.00 3.55
805 921 2.112691 TCTTCTTCTTCCTCCTCCCAGT 59.887 50.000 0.00 0.00 0.00 4.00
818 934 0.695347 CCAGTGGCCCTTCTTCTTCT 59.305 55.000 0.00 0.00 0.00 2.85
833 949 4.074970 GTTGGATGAAGATCACAACCAGT 58.925 43.478 16.59 0.00 35.66 4.00
839 955 3.961480 AGACGTTGGATGAAGATCACA 57.039 42.857 0.00 0.00 0.00 3.58
842 958 6.507900 TGATTCTAGACGTTGGATGAAGATC 58.492 40.000 0.00 0.00 0.00 2.75
853 971 5.333513 GTCAGTCGATTGATTCTAGACGTT 58.666 41.667 14.12 0.00 36.97 3.99
865 983 4.002982 TCTGAAATTGGGTCAGTCGATTG 58.997 43.478 0.68 0.68 42.63 2.67
875 993 3.321968 GGCTCTGTTTTCTGAAATTGGGT 59.678 43.478 3.31 0.00 0.00 4.51
886 1004 4.929819 TTTTGGGTTAGGCTCTGTTTTC 57.070 40.909 0.00 0.00 0.00 2.29
1071 1196 1.300697 GACTTTGACGTGGTCGGCT 60.301 57.895 0.00 0.00 46.49 5.52
1081 1212 2.949142 GTCGAAGGAGGAGACTTTGAC 58.051 52.381 9.13 9.13 46.33 3.18
1241 1372 4.511443 GATCGCCGTCGTCGTCGT 62.511 66.667 10.76 0.00 39.43 4.34
1242 1373 4.219846 AGATCGCCGTCGTCGTCG 62.220 66.667 4.87 4.87 39.77 5.12
1243 1374 2.350985 GAGATCGCCGTCGTCGTC 60.351 66.667 0.71 0.00 36.96 4.20
1606 1737 2.206515 CTCTCTATAGCGGCGGCCAG 62.207 65.000 20.71 12.86 41.24 4.85
1656 1787 0.108992 TGATGTCGAGGTTGGCGTAC 60.109 55.000 0.00 0.00 0.00 3.67
1663 1794 1.374252 GCACGGTGATGTCGAGGTT 60.374 57.895 13.29 0.00 0.00 3.50
1685 1816 4.794439 TGCGGTCGATGGTGCTCG 62.794 66.667 0.00 0.00 39.99 5.03
1946 2077 2.484264 AGCTTAACCACGTCTTTGATGC 59.516 45.455 0.00 0.00 0.00 3.91
2005 2136 1.276705 GCTTTCTTCTCCTTCTCCGGT 59.723 52.381 0.00 0.00 0.00 5.28
2015 2146 0.514691 CACTGGCACGCTTTCTTCTC 59.485 55.000 0.00 0.00 0.00 2.87
2065 2202 0.229753 GTCACGAACAGAGCGTTGTG 59.770 55.000 0.00 0.00 40.44 3.33
2073 2210 1.285950 CCAGCTCGTCACGAACAGA 59.714 57.895 0.00 0.00 34.74 3.41
2294 2431 4.733371 TCGATGCAAGGCACGCGA 62.733 61.111 15.93 12.09 43.04 5.87
2306 2443 0.317854 TAGCTTCGCACCGATCGATG 60.318 55.000 18.66 11.93 35.23 3.84
2392 2533 6.756542 CCTGTGCAAACTTAAAGCTACTTTTT 59.243 34.615 0.00 0.00 35.21 1.94
2415 2556 8.302515 ACAATCAAATATTCTCTGCATTTCCT 57.697 30.769 0.00 0.00 0.00 3.36
2544 2690 7.735500 TGTTGCGAGTATGAATAAAGTTACAC 58.264 34.615 0.00 0.00 0.00 2.90
2589 3692 9.681062 CTTTGTATTTCCTTGGATCTTAGGTTA 57.319 33.333 11.72 4.27 33.15 2.85
2605 3708 7.880059 AGTCGTAGGTGTTACTTTGTATTTC 57.120 36.000 0.00 0.00 0.00 2.17
2620 3723 9.886132 ATTTCATTGTAATTCTTAGTCGTAGGT 57.114 29.630 0.00 0.00 0.00 3.08
2651 3754 1.617357 ACCGCGAAGAAGGAGTTTACT 59.383 47.619 8.23 0.00 0.00 2.24
2658 3761 2.293677 GAGATGATACCGCGAAGAAGGA 59.706 50.000 8.23 0.00 0.00 3.36
2676 3779 3.383505 TGTCTTTGGAGTTCGAACAGAGA 59.616 43.478 28.78 17.55 0.00 3.10
2677 3780 3.717707 TGTCTTTGGAGTTCGAACAGAG 58.282 45.455 28.78 17.40 0.00 3.35
2678 3781 3.812156 TGTCTTTGGAGTTCGAACAGA 57.188 42.857 28.78 19.03 0.00 3.41
2679 3782 3.121944 CGATGTCTTTGGAGTTCGAACAG 59.878 47.826 28.78 17.11 0.00 3.16
2680 3783 3.057019 CGATGTCTTTGGAGTTCGAACA 58.943 45.455 28.78 6.96 0.00 3.18
2681 3784 2.412089 CCGATGTCTTTGGAGTTCGAAC 59.588 50.000 20.71 20.71 0.00 3.95
2682 3785 2.036733 ACCGATGTCTTTGGAGTTCGAA 59.963 45.455 0.00 0.00 32.48 3.71
2683 3786 1.616865 ACCGATGTCTTTGGAGTTCGA 59.383 47.619 0.00 0.00 32.48 3.71
2684 3787 2.080286 ACCGATGTCTTTGGAGTTCG 57.920 50.000 0.00 0.00 32.48 3.95
2685 3788 5.235516 TCTTTACCGATGTCTTTGGAGTTC 58.764 41.667 0.00 0.00 32.48 3.01
2686 3789 5.223449 TCTTTACCGATGTCTTTGGAGTT 57.777 39.130 0.00 0.00 32.48 3.01
2698 3808 2.717639 ATTGCAGCCTCTTTACCGAT 57.282 45.000 0.00 0.00 0.00 4.18
2705 3815 2.573462 TCCAGTCTAATTGCAGCCTCTT 59.427 45.455 0.00 0.00 0.00 2.85
2722 3835 1.195448 GTGACAACATCGTTGCTCCAG 59.805 52.381 6.77 0.00 0.00 3.86
2746 3859 0.782384 GTAATATTCGCGCCGGTGAG 59.218 55.000 21.76 17.25 33.51 3.51
2755 3868 9.243637 TCAAAAAGCAATATTGGTAATATTCGC 57.756 29.630 19.84 14.12 41.01 4.70
2771 3884 5.546526 ACTCAAGGTGTTTTCAAAAAGCAA 58.453 33.333 0.00 0.00 0.00 3.91
2774 3887 5.576774 GGTGACTCAAGGTGTTTTCAAAAAG 59.423 40.000 0.00 0.00 0.00 2.27
2786 3899 4.993705 TTTTAGATGGGTGACTCAAGGT 57.006 40.909 0.00 0.00 0.00 3.50
2814 3927 6.515272 AATACGTTCATTGATCAAGGCTTT 57.485 33.333 15.13 2.49 0.00 3.51
2826 3939 2.027007 TCCCCGGACAAATACGTTCATT 60.027 45.455 0.73 0.00 0.00 2.57
2833 3946 2.105821 TGGATCATCCCCGGACAAATAC 59.894 50.000 0.73 0.00 35.03 1.89
2835 3948 1.133792 GTGGATCATCCCCGGACAAAT 60.134 52.381 0.73 0.00 35.03 2.32
2838 3953 0.263468 TAGTGGATCATCCCCGGACA 59.737 55.000 0.73 0.00 35.03 4.02
2840 3955 0.857675 TCTAGTGGATCATCCCCGGA 59.142 55.000 0.73 0.00 35.03 5.14
2854 3969 3.325293 TCGACGACCTGTACTTCTAGT 57.675 47.619 0.00 0.00 0.00 2.57
2869 3984 4.803613 TGGTGAAGATATTGTGATTCGACG 59.196 41.667 0.00 0.00 0.00 5.12
2872 3987 6.849588 TCATGGTGAAGATATTGTGATTCG 57.150 37.500 0.00 0.00 0.00 3.34
2880 3995 4.356405 TCGGCATCATGGTGAAGATATT 57.644 40.909 11.02 0.00 0.00 1.28
2890 4005 4.579454 AAATCTTTCATCGGCATCATGG 57.421 40.909 0.00 0.00 0.00 3.66
2898 4013 4.941263 TGTGGAGGTTAAATCTTTCATCGG 59.059 41.667 0.00 0.00 0.00 4.18
2907 4022 7.329471 GCTTTGATTCTTTGTGGAGGTTAAATC 59.671 37.037 0.00 0.00 0.00 2.17
2912 4027 3.960102 TGCTTTGATTCTTTGTGGAGGTT 59.040 39.130 0.00 0.00 0.00 3.50
2917 4032 6.419980 TTTTGTTGCTTTGATTCTTTGTGG 57.580 33.333 0.00 0.00 0.00 4.17
2959 4074 4.883006 ACATACTACTCGTCTTCTTCCTCC 59.117 45.833 0.00 0.00 0.00 4.30
3006 4121 2.404215 CTGGACGTAGAACAACCAGTG 58.596 52.381 8.62 0.00 41.91 3.66
3031 4146 4.787551 ACAAAGGCCGGTATAAATGATCA 58.212 39.130 1.90 0.00 0.00 2.92
3032 4147 5.767816 AACAAAGGCCGGTATAAATGATC 57.232 39.130 1.90 0.00 0.00 2.92
3036 4151 5.020795 AGGAAAACAAAGGCCGGTATAAAT 58.979 37.500 1.90 0.00 0.00 1.40
3048 4163 9.942850 ACCCAATTAATATCAAGGAAAACAAAG 57.057 29.630 0.00 0.00 0.00 2.77
3057 4172 8.734386 GCATCTTAGACCCAATTAATATCAAGG 58.266 37.037 0.00 0.00 0.00 3.61
3070 4185 2.338809 CCATAGGGCATCTTAGACCCA 58.661 52.381 10.10 0.00 46.88 4.51
3140 4256 1.068121 ACAACCTTTGAGAGAGGGGG 58.932 55.000 0.00 0.00 38.65 5.40
3141 4257 2.959465 AACAACCTTTGAGAGAGGGG 57.041 50.000 0.00 0.00 38.65 4.79
3142 4258 4.092116 AGAAACAACCTTTGAGAGAGGG 57.908 45.455 0.00 0.00 38.65 4.30
3143 4259 8.848474 TTTATAGAAACAACCTTTGAGAGAGG 57.152 34.615 0.00 0.00 40.24 3.69
3167 4283 7.011295 CCAAATGCACTACAATCTTGTTGTTTT 59.989 33.333 7.30 4.44 42.83 2.43
3199 4315 2.975799 GCACCCGAGCCAAAACGA 60.976 61.111 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.