Multiple sequence alignment - TraesCS3B01G016500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G016500 chr3B 100.000 5827 0 0 1 5827 6676121 6681947 0.000000e+00 10761.0
1 TraesCS3B01G016500 chr3B 80.324 432 71 13 3035 3462 6557018 6557439 1.220000e-81 315.0
2 TraesCS3B01G016500 chr3B 80.069 291 50 8 1765 2051 179200882 179200596 5.920000e-50 209.0
3 TraesCS3B01G016500 chr3B 84.746 59 5 3 5524 5582 698409490 698409436 8.160000e-04 56.5
4 TraesCS3B01G016500 chr3D 93.210 3962 204 26 1765 5686 4193275 4197211 0.000000e+00 5766.0
5 TraesCS3B01G016500 chr3D 91.589 1724 111 20 1 1704 4186028 4187737 0.000000e+00 2350.0
6 TraesCS3B01G016500 chr3D 75.309 1535 294 56 3000 4499 4407535 4409019 0.000000e+00 656.0
7 TraesCS3B01G016500 chr3D 81.588 554 67 20 1 534 4183994 4184532 5.400000e-115 425.0
8 TraesCS3B01G016500 chr3D 74.747 990 181 42 3538 4499 4292319 4293267 4.260000e-101 379.0
9 TraesCS3B01G016500 chr3D 86.164 318 38 5 1001 1315 4404930 4405244 7.230000e-89 339.0
10 TraesCS3B01G016500 chr3D 79.821 446 76 13 3018 3454 4291796 4292236 4.380000e-81 313.0
11 TraesCS3B01G016500 chr3D 92.727 110 7 1 5689 5798 456434319 456434211 2.170000e-34 158.0
12 TraesCS3B01G016500 chr3D 74.916 299 45 29 1765 2049 359601958 359602240 6.170000e-20 110.0
13 TraesCS3B01G016500 chr3D 81.690 71 11 2 5524 5594 136418799 136418867 2.270000e-04 58.4
14 TraesCS3B01G016500 chr3A 89.425 2903 260 29 2226 5099 9853197 9856081 0.000000e+00 3616.0
15 TraesCS3B01G016500 chr3A 90.438 1370 106 21 6 1364 9851674 9853029 0.000000e+00 1781.0
16 TraesCS3B01G016500 chr3A 86.957 736 70 12 3 722 9851123 9851848 0.000000e+00 804.0
17 TraesCS3B01G016500 chr3A 75.440 1535 290 58 3000 4499 10216032 10217514 0.000000e+00 665.0
18 TraesCS3B01G016500 chr3A 78.285 898 129 39 3035 3888 9932599 9933474 8.660000e-143 518.0
19 TraesCS3B01G016500 chr3A 74.845 1288 231 64 3018 4258 9882220 9883461 1.130000e-136 497.0
20 TraesCS3B01G016500 chr3A 82.815 547 72 12 2 530 9847516 9848058 2.460000e-128 470.0
21 TraesCS3B01G016500 chr3A 85.849 318 39 5 1001 1315 10213425 10213739 3.370000e-87 333.0
22 TraesCS3B01G016500 chr3A 79.310 464 61 18 865 1316 9931558 9931998 5.710000e-75 292.0
23 TraesCS3B01G016500 chr3A 82.267 344 46 12 978 1321 10166103 10166431 3.440000e-72 283.0
24 TraesCS3B01G016500 chr3A 80.000 205 38 3 28 230 9847041 9847244 1.310000e-31 148.0
25 TraesCS3B01G016500 chr3A 82.184 174 29 2 6 177 9852207 9852380 1.310000e-31 148.0
26 TraesCS3B01G016500 chr3A 85.714 63 6 3 5490 5551 616249589 616249649 4.870000e-06 63.9
27 TraesCS3B01G016500 chr7A 73.708 1316 244 68 2984 4251 565799037 565800298 2.510000e-113 420.0
28 TraesCS3B01G016500 chr7A 91.818 110 9 0 5689 5798 429476138 429476029 2.810000e-33 154.0
29 TraesCS3B01G016500 chr7D 77.389 743 116 35 3013 3731 499886350 499887064 1.520000e-105 394.0
30 TraesCS3B01G016500 chrUn 74.067 991 185 47 3538 4499 35855777 35854830 2.010000e-89 340.0
31 TraesCS3B01G016500 chrUn 74.067 991 185 47 3538 4499 299959664 299960611 2.010000e-89 340.0
32 TraesCS3B01G016500 chrUn 80.324 432 71 13 3035 3462 35374038 35373617 1.220000e-81 315.0
33 TraesCS3B01G016500 chrUn 92.727 110 8 0 5689 5798 53479843 53479952 6.040000e-35 159.0
34 TraesCS3B01G016500 chrUn 92.727 110 8 0 5689 5798 53480631 53480740 6.040000e-35 159.0
35 TraesCS3B01G016500 chrUn 91.818 110 9 0 5689 5798 131414520 131414411 2.810000e-33 154.0
36 TraesCS3B01G016500 chr7B 86.441 177 24 0 3555 3731 527858608 527858784 1.660000e-45 195.0
37 TraesCS3B01G016500 chr7B 83.553 152 15 9 1903 2050 422246993 422246848 3.660000e-27 134.0
38 TraesCS3B01G016500 chr7B 82.166 157 16 9 1903 2054 302197755 302197904 2.200000e-24 124.0
39 TraesCS3B01G016500 chr7B 96.875 32 1 0 5564 5595 104073307 104073276 3.000000e-03 54.7
40 TraesCS3B01G016500 chr4D 78.777 278 44 14 1780 2051 190837746 190838014 7.760000e-39 172.0
41 TraesCS3B01G016500 chr4D 82.468 154 15 9 1903 2051 38457282 38457136 2.200000e-24 124.0
42 TraesCS3B01G016500 chr5D 77.617 277 51 10 1781 2053 238913383 238913114 2.170000e-34 158.0
43 TraesCS3B01G016500 chr5D 75.251 299 53 14 1765 2056 525845334 525845618 7.930000e-24 122.0
44 TraesCS3B01G016500 chr5D 79.348 92 14 5 5496 5585 112955866 112955954 6.310000e-05 60.2
45 TraesCS3B01G016500 chr4A 92.523 107 8 0 5689 5795 521553615 521553721 2.810000e-33 154.0
46 TraesCS3B01G016500 chr2D 90.991 111 10 0 5688 5798 463684340 463684450 3.640000e-32 150.0
47 TraesCS3B01G016500 chr2D 90.909 110 9 1 5689 5798 9641890 9641782 4.710000e-31 147.0
48 TraesCS3B01G016500 chr2D 83.333 84 13 1 5498 5581 514341507 514341425 6.260000e-10 76.8
49 TraesCS3B01G016500 chr1A 91.589 107 8 1 5689 5795 558834458 558834563 4.710000e-31 147.0
50 TraesCS3B01G016500 chr2A 79.775 89 12 6 5498 5584 618434143 618434227 6.310000e-05 60.2
51 TraesCS3B01G016500 chr2B 78.723 94 13 7 5498 5588 691994697 691994786 8.160000e-04 56.5
52 TraesCS3B01G016500 chr2B 96.970 33 1 0 5560 5592 705874299 705874267 8.160000e-04 56.5
53 TraesCS3B01G016500 chr5A 94.286 35 2 0 5517 5551 538017087 538017121 3.000000e-03 54.7
54 TraesCS3B01G016500 chr1B 84.906 53 6 2 5500 5551 105576657 105576708 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G016500 chr3B 6676121 6681947 5826 False 10761.000000 10761 100.000000 1 5827 1 chr3B.!!$F2 5826
1 TraesCS3B01G016500 chr3D 4193275 4197211 3936 False 5766.000000 5766 93.210000 1765 5686 1 chr3D.!!$F1 3921
2 TraesCS3B01G016500 chr3D 4183994 4187737 3743 False 1387.500000 2350 86.588500 1 1704 2 chr3D.!!$F4 1703
3 TraesCS3B01G016500 chr3D 4404930 4409019 4089 False 497.500000 656 80.736500 1001 4499 2 chr3D.!!$F6 3498
4 TraesCS3B01G016500 chr3D 4291796 4293267 1471 False 346.000000 379 77.284000 3018 4499 2 chr3D.!!$F5 1481
5 TraesCS3B01G016500 chr3A 9847041 9856081 9040 False 1161.166667 3616 85.303167 2 5099 6 chr3A.!!$F4 5097
6 TraesCS3B01G016500 chr3A 10213425 10217514 4089 False 499.000000 665 80.644500 1001 4499 2 chr3A.!!$F6 3498
7 TraesCS3B01G016500 chr3A 9882220 9883461 1241 False 497.000000 497 74.845000 3018 4258 1 chr3A.!!$F1 1240
8 TraesCS3B01G016500 chr3A 9931558 9933474 1916 False 405.000000 518 78.797500 865 3888 2 chr3A.!!$F5 3023
9 TraesCS3B01G016500 chr7A 565799037 565800298 1261 False 420.000000 420 73.708000 2984 4251 1 chr7A.!!$F1 1267
10 TraesCS3B01G016500 chr7D 499886350 499887064 714 False 394.000000 394 77.389000 3013 3731 1 chr7D.!!$F1 718
11 TraesCS3B01G016500 chrUn 35854830 35855777 947 True 340.000000 340 74.067000 3538 4499 1 chrUn.!!$R2 961
12 TraesCS3B01G016500 chrUn 299959664 299960611 947 False 340.000000 340 74.067000 3538 4499 1 chrUn.!!$F1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 5144 0.110486 AGTCCCGAGTTGCCATTGTT 59.890 50.000 0.00 0.0 0.00 2.83 F
546 5220 0.675208 TGCGCATAATGACACCGGTT 60.675 50.000 5.66 0.0 0.00 4.44 F
1128 5812 1.065928 CGGTACATCTCGGGTCAGC 59.934 63.158 0.00 0.0 0.00 4.26 F
2115 7682 0.248289 GAGCGGTGCTACTTTACCCA 59.752 55.000 0.00 0.0 39.88 4.51 F
2454 8069 0.463295 CTGACCAAGAGCATCGGCAT 60.463 55.000 0.00 0.0 44.61 4.40 F
3317 9407 0.755686 GATCTTGATGGGCGAGACCT 59.244 55.000 0.00 0.0 39.83 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 6051 0.466555 AAAGTGGTGGCGTGGCTTAA 60.467 50.000 0.00 0.0 0.00 1.85 R
1365 6052 0.466555 AAAAGTGGTGGCGTGGCTTA 60.467 50.000 0.00 0.0 0.00 3.09 R
2436 8051 0.829990 TATGCCGATGCTCTTGGTCA 59.170 50.000 0.00 0.0 38.71 4.02 R
3317 9407 2.513753 CAGATGTGTGCCCACCTTTAA 58.486 47.619 0.00 0.0 41.09 1.52 R
4222 10404 1.338769 GGGAAGCATGTACTTGACGGT 60.339 52.381 12.65 0.0 0.00 4.83 R
5133 11333 0.253044 ACTAAGTGGGCATGATGCGT 59.747 50.000 11.75 0.0 46.21 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 4914 3.277142 TCTATTTCGGCTCCCCTTTTC 57.723 47.619 0.00 0.00 0.00 2.29
286 4946 7.389884 CCAGTCATTTCATGGATTTATCGATCT 59.610 37.037 0.00 0.00 36.09 2.75
287 4947 8.781196 CAGTCATTTCATGGATTTATCGATCTT 58.219 33.333 0.00 0.00 0.00 2.40
312 4972 5.991933 AATATGTGCTCTAGGTGATCGAT 57.008 39.130 0.00 0.00 0.00 3.59
332 4992 4.494690 CGATGGTGCAATCATGTAACTGTC 60.495 45.833 8.33 0.00 29.11 3.51
339 4999 4.142816 GCAATCATGTAACTGTCACAGTCC 60.143 45.833 11.89 5.75 44.62 3.85
350 5010 2.271800 GTCACAGTCCTAATTGCTCGG 58.728 52.381 0.00 0.00 0.00 4.63
389 5049 3.482783 GCTGAGAAGTCGCGCCAC 61.483 66.667 0.00 0.00 0.00 5.01
442 5114 2.072298 CCTGAAGTTCTCTTTGCCGAG 58.928 52.381 4.17 0.00 33.64 4.63
455 5127 1.595382 GCCGAGTGCACACTTCAGT 60.595 57.895 21.04 0.00 42.66 3.41
469 5141 0.400213 TTCAGTCCCGAGTTGCCATT 59.600 50.000 0.00 0.00 0.00 3.16
470 5142 0.321564 TCAGTCCCGAGTTGCCATTG 60.322 55.000 0.00 0.00 0.00 2.82
472 5144 0.110486 AGTCCCGAGTTGCCATTGTT 59.890 50.000 0.00 0.00 0.00 2.83
475 5147 1.072489 TCCCGAGTTGCCATTGTTGTA 59.928 47.619 0.00 0.00 0.00 2.41
483 5155 1.702401 TGCCATTGTTGTACTCCTCCA 59.298 47.619 0.00 0.00 0.00 3.86
485 5157 2.027192 GCCATTGTTGTACTCCTCCAGA 60.027 50.000 0.00 0.00 0.00 3.86
487 5159 4.446371 CCATTGTTGTACTCCTCCAGATC 58.554 47.826 0.00 0.00 0.00 2.75
506 5178 2.239400 TCGTCCTCATCGCCTATGATT 58.761 47.619 0.00 0.00 43.70 2.57
507 5179 2.628178 TCGTCCTCATCGCCTATGATTT 59.372 45.455 0.00 0.00 43.70 2.17
542 5216 1.895051 GTGTTGCGCATAATGACACC 58.105 50.000 24.89 11.69 35.71 4.16
546 5220 0.675208 TGCGCATAATGACACCGGTT 60.675 50.000 5.66 0.00 0.00 4.44
569 5243 2.228059 TCCATCGGAGACTCGGATAAC 58.772 52.381 21.26 0.00 42.51 1.89
646 5321 8.153479 TGTTCCAATTCGATCAAATGGTATAG 57.847 34.615 10.09 0.00 0.00 1.31
681 5356 2.159296 GGTCCAGTGTGTTGTTTTGTCC 60.159 50.000 0.00 0.00 0.00 4.02
729 5404 1.672356 GCAATCTGCCCAGACGTGT 60.672 57.895 0.00 0.00 40.75 4.49
802 5477 9.342308 TCCATGGATGTCTCATTCTTAAAATAC 57.658 33.333 11.44 0.00 0.00 1.89
915 5592 1.067060 CATGCATGGCCAGACAAGATG 59.933 52.381 19.40 3.30 0.00 2.90
976 5657 4.220821 GTGACATCAACCTCACTTCCTCTA 59.779 45.833 0.00 0.00 34.99 2.43
1105 5786 1.133025 GCAAAGGTATGCGTTCATGCT 59.867 47.619 5.88 0.00 36.45 3.79
1118 5802 3.060272 CGTTCATGCTTGATCGGTACATC 60.060 47.826 19.81 0.00 40.00 3.06
1128 5812 1.065928 CGGTACATCTCGGGTCAGC 59.934 63.158 0.00 0.00 0.00 4.26
1191 5877 3.066621 TGTTGGTGTTTCTCTTGCATGAC 59.933 43.478 0.00 0.00 0.00 3.06
1251 5937 3.710677 AGCCTGATGTGAAGAAGCTCTAT 59.289 43.478 0.00 0.00 0.00 1.98
1302 5988 1.281899 CGAAGCTTCGGATTCAGACC 58.718 55.000 35.58 2.17 46.30 3.85
1317 6003 6.990349 GGATTCAGACCGAGGTGAAATATTTA 59.010 38.462 0.00 0.00 36.31 1.40
1374 6061 4.568152 ATCCACATTAATTAAGCCACGC 57.432 40.909 3.94 0.00 0.00 5.34
1379 6066 2.201921 TTAATTAAGCCACGCCACCA 57.798 45.000 0.00 0.00 0.00 4.17
1382 6069 0.251165 ATTAAGCCACGCCACCACTT 60.251 50.000 0.00 0.00 0.00 3.16
1405 6092 4.893424 TTTCCCTTCAAAAAGACGTCAG 57.107 40.909 19.50 3.99 34.14 3.51
1410 6097 3.303395 CCTTCAAAAAGACGTCAGTGCTC 60.303 47.826 19.50 0.00 34.14 4.26
1482 6170 1.210478 TCTTAGGCCCTGTCTGCATTC 59.790 52.381 0.00 0.00 0.00 2.67
1544 6236 2.350522 AGCTAAATTCTGGTGAGCACG 58.649 47.619 0.00 0.00 35.55 5.34
1597 6289 2.543653 GCTGTTTGCACACTTAACCCTG 60.544 50.000 4.37 0.00 42.31 4.45
1620 6312 7.540055 CCTGCATCTAGAATGAACTTTTGTTTC 59.460 37.037 0.00 0.00 43.66 2.78
1623 6315 5.997385 TCTAGAATGAACTTTTGTTTCGGC 58.003 37.500 0.00 0.00 43.66 5.54
1630 6322 3.432445 TTTTGTTTCGGCCGGGGGA 62.432 57.895 27.83 1.61 0.00 4.81
1697 6389 1.995376 AGGCTGAAATTCAACCGGTT 58.005 45.000 15.86 15.86 37.68 4.44
1704 6396 4.912586 TGAAATTCAACCGGTTCCTATCA 58.087 39.130 19.24 15.09 0.00 2.15
1705 6397 5.317808 TGAAATTCAACCGGTTCCTATCAA 58.682 37.500 19.24 3.92 0.00 2.57
1706 6398 5.949354 TGAAATTCAACCGGTTCCTATCAAT 59.051 36.000 19.24 6.13 0.00 2.57
1707 6399 6.094881 TGAAATTCAACCGGTTCCTATCAATC 59.905 38.462 19.24 9.09 0.00 2.67
1708 6400 3.173668 TCAACCGGTTCCTATCAATCG 57.826 47.619 19.24 1.84 0.00 3.34
1709 6401 2.498481 TCAACCGGTTCCTATCAATCGT 59.502 45.455 19.24 0.00 0.00 3.73
1710 6402 2.864343 CAACCGGTTCCTATCAATCGTC 59.136 50.000 19.24 0.00 0.00 4.20
1711 6403 1.066605 ACCGGTTCCTATCAATCGTCG 59.933 52.381 0.00 0.00 0.00 5.12
1712 6404 1.602165 CCGGTTCCTATCAATCGTCGG 60.602 57.143 0.00 0.00 0.00 4.79
1713 6405 1.066605 CGGTTCCTATCAATCGTCGGT 59.933 52.381 0.00 0.00 0.00 4.69
1714 6406 2.480759 CGGTTCCTATCAATCGTCGGTT 60.481 50.000 0.00 0.00 0.00 4.44
1715 6407 3.243168 CGGTTCCTATCAATCGTCGGTTA 60.243 47.826 0.00 0.00 0.00 2.85
1716 6408 4.685924 GGTTCCTATCAATCGTCGGTTAA 58.314 43.478 0.00 0.00 0.00 2.01
1717 6409 5.295152 GGTTCCTATCAATCGTCGGTTAAT 58.705 41.667 0.00 0.00 0.00 1.40
1718 6410 5.176958 GGTTCCTATCAATCGTCGGTTAATG 59.823 44.000 0.00 0.00 0.00 1.90
1719 6411 5.777850 TCCTATCAATCGTCGGTTAATGA 57.222 39.130 0.00 0.00 0.00 2.57
1720 6412 5.769367 TCCTATCAATCGTCGGTTAATGAG 58.231 41.667 0.00 0.00 0.00 2.90
1721 6413 4.923871 CCTATCAATCGTCGGTTAATGAGG 59.076 45.833 0.00 0.00 0.00 3.86
1722 6414 3.173668 TCAATCGTCGGTTAATGAGGG 57.826 47.619 0.00 0.00 0.00 4.30
1723 6415 2.761767 TCAATCGTCGGTTAATGAGGGA 59.238 45.455 0.00 0.00 0.00 4.20
1724 6416 3.386726 TCAATCGTCGGTTAATGAGGGAT 59.613 43.478 0.00 0.00 0.00 3.85
1725 6417 4.585581 TCAATCGTCGGTTAATGAGGGATA 59.414 41.667 0.00 0.00 0.00 2.59
1726 6418 4.785511 ATCGTCGGTTAATGAGGGATAG 57.214 45.455 0.00 0.00 0.00 2.08
1727 6419 2.889045 TCGTCGGTTAATGAGGGATAGG 59.111 50.000 0.00 0.00 0.00 2.57
1728 6420 2.889045 CGTCGGTTAATGAGGGATAGGA 59.111 50.000 0.00 0.00 0.00 2.94
1729 6421 3.319972 CGTCGGTTAATGAGGGATAGGAA 59.680 47.826 0.00 0.00 0.00 3.36
1730 6422 4.202182 CGTCGGTTAATGAGGGATAGGAAA 60.202 45.833 0.00 0.00 0.00 3.13
1731 6423 5.298347 GTCGGTTAATGAGGGATAGGAAAG 58.702 45.833 0.00 0.00 0.00 2.62
1732 6424 5.070047 GTCGGTTAATGAGGGATAGGAAAGA 59.930 44.000 0.00 0.00 0.00 2.52
1733 6425 5.664006 TCGGTTAATGAGGGATAGGAAAGAA 59.336 40.000 0.00 0.00 0.00 2.52
1734 6426 5.758784 CGGTTAATGAGGGATAGGAAAGAAC 59.241 44.000 0.00 0.00 0.00 3.01
1735 6427 6.631766 CGGTTAATGAGGGATAGGAAAGAACA 60.632 42.308 0.00 0.00 0.00 3.18
1736 6428 7.116736 GGTTAATGAGGGATAGGAAAGAACAA 58.883 38.462 0.00 0.00 0.00 2.83
1737 6429 7.780271 GGTTAATGAGGGATAGGAAAGAACAAT 59.220 37.037 0.00 0.00 0.00 2.71
1738 6430 8.841300 GTTAATGAGGGATAGGAAAGAACAATC 58.159 37.037 0.00 0.00 0.00 2.67
1739 6431 5.023533 TGAGGGATAGGAAAGAACAATCG 57.976 43.478 0.00 0.00 0.00 3.34
1740 6432 4.469945 TGAGGGATAGGAAAGAACAATCGT 59.530 41.667 0.00 0.00 0.00 3.73
1741 6433 5.024785 AGGGATAGGAAAGAACAATCGTC 57.975 43.478 0.00 0.00 0.00 4.20
1742 6434 3.802685 GGGATAGGAAAGAACAATCGTCG 59.197 47.826 0.00 0.00 0.00 5.12
1743 6435 3.802685 GGATAGGAAAGAACAATCGTCGG 59.197 47.826 0.00 0.00 0.00 4.79
1744 6436 2.833631 AGGAAAGAACAATCGTCGGT 57.166 45.000 0.00 0.00 0.00 4.69
1745 6437 3.121738 AGGAAAGAACAATCGTCGGTT 57.878 42.857 0.00 0.00 0.00 4.44
1746 6438 4.261578 AGGAAAGAACAATCGTCGGTTA 57.738 40.909 0.00 0.00 0.00 2.85
1747 6439 4.634199 AGGAAAGAACAATCGTCGGTTAA 58.366 39.130 0.00 0.00 0.00 2.01
1748 6440 5.243207 AGGAAAGAACAATCGTCGGTTAAT 58.757 37.500 0.00 0.00 0.00 1.40
1749 6441 6.400568 AGGAAAGAACAATCGTCGGTTAATA 58.599 36.000 0.00 0.00 0.00 0.98
1750 6442 6.875195 AGGAAAGAACAATCGTCGGTTAATAA 59.125 34.615 0.00 0.00 0.00 1.40
1751 6443 7.551617 AGGAAAGAACAATCGTCGGTTAATAAT 59.448 33.333 0.00 0.00 0.00 1.28
1752 6444 7.849515 GGAAAGAACAATCGTCGGTTAATAATC 59.150 37.037 0.00 0.00 0.00 1.75
1753 6445 6.506464 AGAACAATCGTCGGTTAATAATCG 57.494 37.500 0.00 0.00 0.00 3.34
1754 6446 6.038356 AGAACAATCGTCGGTTAATAATCGT 58.962 36.000 5.53 0.00 0.00 3.73
1755 6447 6.532657 AGAACAATCGTCGGTTAATAATCGTT 59.467 34.615 5.53 0.00 0.00 3.85
1756 6448 6.028040 ACAATCGTCGGTTAATAATCGTTG 57.972 37.500 5.53 5.54 0.00 4.10
1757 6449 5.005971 ACAATCGTCGGTTAATAATCGTTGG 59.994 40.000 5.53 0.00 0.00 3.77
1758 6450 4.368874 TCGTCGGTTAATAATCGTTGGA 57.631 40.909 5.53 0.00 0.00 3.53
1759 6451 4.353737 TCGTCGGTTAATAATCGTTGGAG 58.646 43.478 5.53 0.00 0.00 3.86
1760 6452 3.488310 CGTCGGTTAATAATCGTTGGAGG 59.512 47.826 5.53 0.00 0.00 4.30
1761 6453 4.685924 GTCGGTTAATAATCGTTGGAGGA 58.314 43.478 5.53 0.00 0.00 3.71
1762 6454 5.111293 GTCGGTTAATAATCGTTGGAGGAA 58.889 41.667 5.53 0.00 0.00 3.36
1763 6455 5.233689 GTCGGTTAATAATCGTTGGAGGAAG 59.766 44.000 5.53 0.00 0.00 3.46
1764 6456 5.127519 TCGGTTAATAATCGTTGGAGGAAGA 59.872 40.000 5.53 0.00 0.00 2.87
1768 6460 7.282450 GGTTAATAATCGTTGGAGGAAGAACAT 59.718 37.037 0.00 0.00 0.00 2.71
1801 6493 9.920946 ACCCTAACAATATGTTCTCATTATTGT 57.079 29.630 0.00 0.00 40.22 2.71
1849 6542 3.954258 CCCATGGATAGGAAAGAACAACC 59.046 47.826 15.22 0.00 0.00 3.77
1850 6543 4.569653 CCCATGGATAGGAAAGAACAACCA 60.570 45.833 15.22 0.00 0.00 3.67
1857 6550 4.918810 AGGAAAGAACAACCACATCAAC 57.081 40.909 0.00 0.00 0.00 3.18
1888 6581 5.418209 TGAGTTACTCAAGAGGCCTAACTAC 59.582 44.000 13.16 5.21 37.57 2.73
1896 6589 1.614413 GAGGCCTAACTACGGATCTGG 59.386 57.143 4.42 0.00 0.00 3.86
1914 6607 5.843019 TCTGGTTGGAGTTTATCTTTCCT 57.157 39.130 0.00 0.00 32.12 3.36
1956 6649 6.955364 TCCTCTGAATCTCACATTCAAGAAT 58.045 36.000 0.00 0.00 37.55 2.40
2037 7604 6.966534 AAAACATCATTATTGCCTCTAGGG 57.033 37.500 0.00 0.00 35.18 3.53
2038 7605 5.912149 AACATCATTATTGCCTCTAGGGA 57.088 39.130 0.00 0.00 37.23 4.20
2062 7629 7.552687 GGAGTATTTCCAACAATAGTGACATCA 59.447 37.037 0.00 0.00 46.01 3.07
2078 7645 2.308570 ACATCACCCCTTATCTGCAACA 59.691 45.455 0.00 0.00 0.00 3.33
2115 7682 0.248289 GAGCGGTGCTACTTTACCCA 59.752 55.000 0.00 0.00 39.88 4.51
2119 7686 2.706890 CGGTGCTACTTTACCCACAAT 58.293 47.619 0.00 0.00 33.32 2.71
2139 7706 6.374333 CACAATAGTGGCACCTTTAGTAATGT 59.626 38.462 15.27 5.66 42.13 2.71
2156 7723 5.663106 AGTAATGTCCTCCAAATGAGCTCTA 59.337 40.000 16.19 1.49 39.98 2.43
2162 7729 2.768527 CTCCAAATGAGCTCTACCTCCA 59.231 50.000 16.19 0.00 33.47 3.86
2179 7746 1.974957 TCCATCCTCAAGTTCCAACGA 59.025 47.619 0.00 0.00 0.00 3.85
2180 7747 2.076863 CCATCCTCAAGTTCCAACGAC 58.923 52.381 0.00 0.00 0.00 4.34
2268 7835 1.368641 CAATCATTTGCGTCGAGGGA 58.631 50.000 7.31 0.19 0.00 4.20
2345 7959 4.457949 GGACGTTACATGATCCTGGTTTTT 59.542 41.667 0.00 0.00 0.00 1.94
2347 7961 6.183360 GGACGTTACATGATCCTGGTTTTTAG 60.183 42.308 0.00 0.00 0.00 1.85
2419 8034 5.779771 ACAATGTGTGGGGATGAAAGTTAAT 59.220 36.000 0.00 0.00 0.00 1.40
2420 8035 6.269769 ACAATGTGTGGGGATGAAAGTTAATT 59.730 34.615 0.00 0.00 0.00 1.40
2449 8064 2.485814 GTCAAACCTGACCAAGAGCATC 59.514 50.000 0.00 0.00 45.41 3.91
2454 8069 0.463295 CTGACCAAGAGCATCGGCAT 60.463 55.000 0.00 0.00 44.61 4.40
2509 8124 6.640092 GCTTTGCTATTTTTCAGATCATAGGC 59.360 38.462 0.00 0.00 0.00 3.93
2518 8133 1.905215 CAGATCATAGGCCGGGAGATT 59.095 52.381 2.18 0.00 0.00 2.40
2709 8325 6.316140 ACAAATTTCTTTGAAAGGTTTGAGGC 59.684 34.615 24.07 0.00 43.71 4.70
2710 8326 5.612725 ATTTCTTTGAAAGGTTTGAGGCA 57.387 34.783 4.94 0.00 0.00 4.75
2930 8992 3.081804 GGTCAAAGTTACACCCTGATGG 58.918 50.000 0.00 0.00 41.37 3.51
2980 9042 4.289672 ACTGGTGAATTGGAAGGAGTATGT 59.710 41.667 0.00 0.00 0.00 2.29
3317 9407 0.755686 GATCTTGATGGGCGAGACCT 59.244 55.000 0.00 0.00 39.83 3.85
3370 9460 7.447594 AGTCCGAGTTAATTTTAGTCAAGGAA 58.552 34.615 0.00 0.00 0.00 3.36
3415 9505 0.902531 GTTCCACGGAGAAGGATGGA 59.097 55.000 0.00 0.00 39.50 3.41
3766 9899 6.603997 TCCCTTAACAACAATGTACAACACTT 59.396 34.615 0.00 0.00 39.40 3.16
3907 10070 4.020928 TGAGCTTGTTCATGAATTGGCAAT 60.021 37.500 22.13 6.96 0.00 3.56
4071 10253 5.594725 AGTCATCTACCATGTAACATCGTCT 59.405 40.000 0.00 0.00 0.00 4.18
4119 10301 5.630415 TCCTTTGGAAGTCTCTCTTTCAA 57.370 39.130 0.00 0.00 46.37 2.69
4222 10404 3.483808 TGTGGTTCAAGCTGTACATGA 57.516 42.857 0.00 0.00 0.00 3.07
4311 10493 8.149631 TGTTGATTAGGGATATATGAGATGCA 57.850 34.615 0.00 0.00 0.00 3.96
4312 10494 8.605065 TGTTGATTAGGGATATATGAGATGCAA 58.395 33.333 0.00 0.00 0.00 4.08
4313 10495 9.453572 GTTGATTAGGGATATATGAGATGCAAA 57.546 33.333 0.00 0.00 0.00 3.68
4501 10684 4.278419 CCTTGTTCAAAGGGTGGTAAGAAG 59.722 45.833 0.00 0.00 33.79 2.85
4555 10748 5.146010 TGCAATATTTCCTTCCGCTTTTT 57.854 34.783 0.00 0.00 0.00 1.94
4604 10797 4.020751 AGTGCGTCCTCATAGCATATCAAT 60.021 41.667 0.00 0.00 43.17 2.57
4641 10835 5.178061 CCCTTAAAATGCCATTCTTTGACC 58.822 41.667 0.00 0.00 0.00 4.02
4700 10894 2.494888 TGGATAAGCTCAGGATGGGA 57.505 50.000 0.00 0.00 41.11 4.37
4787 10981 4.196971 ACTGGGGCGATTATTTCTACAAC 58.803 43.478 0.00 0.00 0.00 3.32
4817 11011 2.503331 CCTGGTGTGCTCAAATACACA 58.497 47.619 9.38 0.00 46.79 3.72
4839 11033 8.832521 ACACACGTGATTGAGTTATTTCTTTAA 58.167 29.630 25.01 0.00 0.00 1.52
4841 11035 9.052759 ACACGTGATTGAGTTATTTCTTTAACT 57.947 29.630 25.01 0.00 43.39 2.24
4859 11053 2.699954 ACTAGACAATTTCCCAGTGCG 58.300 47.619 0.00 0.00 0.00 5.34
5003 11203 0.447801 GTAGTGTTTGCCAGATGCCG 59.552 55.000 0.00 0.00 40.16 5.69
5136 11336 5.914085 AAGAGCAAAGTATATCATCACGC 57.086 39.130 0.00 0.00 0.00 5.34
5137 11337 4.948847 AGAGCAAAGTATATCATCACGCA 58.051 39.130 0.00 0.00 0.00 5.24
5138 11338 5.545588 AGAGCAAAGTATATCATCACGCAT 58.454 37.500 0.00 0.00 0.00 4.73
5139 11339 5.636965 AGAGCAAAGTATATCATCACGCATC 59.363 40.000 0.00 0.00 0.00 3.91
5149 11349 0.394762 ATCACGCATCATGCCCACTT 60.395 50.000 3.38 0.00 41.12 3.16
5166 11366 6.016610 TGCCCACTTAGTTGAAGATGTTAAAC 60.017 38.462 0.00 0.00 38.65 2.01
5204 11404 0.537828 GGGAGGCCGTGGTGTAAAAA 60.538 55.000 0.00 0.00 0.00 1.94
5210 11410 1.944709 GCCGTGGTGTAAAAACTCTGT 59.055 47.619 0.00 0.00 0.00 3.41
5212 11412 3.199677 CCGTGGTGTAAAAACTCTGTCA 58.800 45.455 0.00 0.00 0.00 3.58
5299 11501 7.221452 CACTCTAATAAACTTGCCATGCATTTC 59.779 37.037 0.00 0.00 38.76 2.17
5374 11576 3.742433 TTGCAAAATTTCCGTGGACAT 57.258 38.095 0.00 0.00 0.00 3.06
5378 11580 4.035017 GCAAAATTTCCGTGGACATATCG 58.965 43.478 0.00 0.00 0.00 2.92
5382 11584 2.218953 TTCCGTGGACATATCGAAGC 57.781 50.000 0.00 0.00 0.00 3.86
5431 11634 9.865321 TTCTACATACTAGTACAATTTGGACAC 57.135 33.333 14.11 2.75 32.29 3.67
5432 11635 8.186163 TCTACATACTAGTACAATTTGGACACG 58.814 37.037 14.11 6.64 32.29 4.49
5495 11714 9.216087 CGAGTATGCTTATACGAAATCTATCAG 57.784 37.037 0.00 0.00 32.52 2.90
5507 11726 5.302059 CGAAATCTATCAGTTACTCCCTCCA 59.698 44.000 0.00 0.00 0.00 3.86
5510 11729 5.403558 TCTATCAGTTACTCCCTCCATCA 57.596 43.478 0.00 0.00 0.00 3.07
5521 11740 6.636454 ACTCCCTCCATCACAAAATAAGTA 57.364 37.500 0.00 0.00 0.00 2.24
5522 11741 6.653989 ACTCCCTCCATCACAAAATAAGTAG 58.346 40.000 0.00 0.00 0.00 2.57
5536 11755 9.326413 ACAAAATAAGTAGCGCTGATTTAGTAT 57.674 29.630 22.90 5.06 37.29 2.12
5558 11777 8.992073 AGTATAAAGTTGTACTAAAACCAACGG 58.008 33.333 0.00 0.00 42.45 4.44
5566 11785 4.759516 ACTAAAACCAACGGCACTTATG 57.240 40.909 0.00 0.00 0.00 1.90
5593 11812 8.065385 TGGGACGGAGGGAGTATTATATATAT 57.935 38.462 0.00 0.00 0.00 0.86
5631 11851 4.281182 AGAGGTAACGAAGAGAAAAGCTGA 59.719 41.667 0.00 0.00 46.39 4.26
5639 11859 6.795399 ACGAAGAGAAAAGCTGAAAAATTCA 58.205 32.000 0.00 0.00 38.17 2.57
5640 11860 7.428826 ACGAAGAGAAAAGCTGAAAAATTCAT 58.571 30.769 0.00 0.00 39.30 2.57
5669 11889 1.067295 AGCCCTTGATCTTGTGGACA 58.933 50.000 0.00 0.00 0.00 4.02
5687 11907 8.346476 TGTGGACATTTCAAAATTAAGAAACG 57.654 30.769 7.21 3.16 36.65 3.60
5688 11908 8.191446 TGTGGACATTTCAAAATTAAGAAACGA 58.809 29.630 7.21 0.00 36.65 3.85
5689 11909 8.476925 GTGGACATTTCAAAATTAAGAAACGAC 58.523 33.333 7.21 1.61 36.65 4.34
5690 11910 8.410141 TGGACATTTCAAAATTAAGAAACGACT 58.590 29.630 7.21 0.00 36.65 4.18
5691 11911 9.887406 GGACATTTCAAAATTAAGAAACGACTA 57.113 29.630 7.21 0.00 36.65 2.59
5693 11913 9.394477 ACATTTCAAAATTAAGAAACGACTAGC 57.606 29.630 7.21 0.00 36.65 3.42
5694 11914 9.393249 CATTTCAAAATTAAGAAACGACTAGCA 57.607 29.630 7.21 0.00 36.65 3.49
5695 11915 8.776680 TTTCAAAATTAAGAAACGACTAGCAC 57.223 30.769 0.00 0.00 0.00 4.40
5696 11916 7.485418 TCAAAATTAAGAAACGACTAGCACA 57.515 32.000 0.00 0.00 0.00 4.57
5697 11917 8.094798 TCAAAATTAAGAAACGACTAGCACAT 57.905 30.769 0.00 0.00 0.00 3.21
5698 11918 9.210329 TCAAAATTAAGAAACGACTAGCACATA 57.790 29.630 0.00 0.00 0.00 2.29
5699 11919 9.988350 CAAAATTAAGAAACGACTAGCACATAT 57.012 29.630 0.00 0.00 0.00 1.78
5700 11920 9.988350 AAAATTAAGAAACGACTAGCACATATG 57.012 29.630 0.00 0.00 0.00 1.78
5701 11921 8.718102 AATTAAGAAACGACTAGCACATATGT 57.282 30.769 1.41 1.41 0.00 2.29
5702 11922 7.751047 TTAAGAAACGACTAGCACATATGTC 57.249 36.000 5.07 1.35 0.00 3.06
5703 11923 5.584253 AGAAACGACTAGCACATATGTCT 57.416 39.130 5.07 8.94 0.00 3.41
5704 11924 5.344066 AGAAACGACTAGCACATATGTCTG 58.656 41.667 5.07 0.00 0.00 3.51
5705 11925 4.720649 AACGACTAGCACATATGTCTGT 57.279 40.909 5.07 2.50 0.00 3.41
5712 11932 2.163826 CACATATGTCTGTGCGTTGC 57.836 50.000 5.07 0.00 40.03 4.17
5713 11933 1.464219 CACATATGTCTGTGCGTTGCA 59.536 47.619 5.07 0.00 40.03 4.08
5714 11934 2.095819 CACATATGTCTGTGCGTTGCAA 60.096 45.455 5.07 0.00 41.47 4.08
5715 11935 2.095768 ACATATGTCTGTGCGTTGCAAC 60.096 45.455 19.89 19.89 41.47 4.17
5766 11986 8.147642 AGTTATTGAGAGTTATATGTGCAAGC 57.852 34.615 0.00 0.00 0.00 4.01
5767 11987 7.770433 AGTTATTGAGAGTTATATGTGCAAGCA 59.230 33.333 0.00 0.00 0.00 3.91
5768 11988 8.397906 GTTATTGAGAGTTATATGTGCAAGCAA 58.602 33.333 0.00 0.00 0.00 3.91
5769 11989 6.816134 TTGAGAGTTATATGTGCAAGCAAA 57.184 33.333 0.00 0.00 0.00 3.68
5770 11990 6.816134 TGAGAGTTATATGTGCAAGCAAAA 57.184 33.333 0.00 0.00 0.00 2.44
5771 11991 6.611381 TGAGAGTTATATGTGCAAGCAAAAC 58.389 36.000 0.00 0.00 0.00 2.43
5772 11992 6.430925 TGAGAGTTATATGTGCAAGCAAAACT 59.569 34.615 0.00 5.08 0.00 2.66
5773 11993 6.846350 AGAGTTATATGTGCAAGCAAAACTC 58.154 36.000 17.99 17.99 41.04 3.01
5774 11994 6.656693 AGAGTTATATGTGCAAGCAAAACTCT 59.343 34.615 20.70 20.70 44.20 3.24
5775 11995 6.615088 AGTTATATGTGCAAGCAAAACTCTG 58.385 36.000 0.00 0.00 0.00 3.35
5776 11996 6.207417 AGTTATATGTGCAAGCAAAACTCTGT 59.793 34.615 0.00 0.00 0.00 3.41
5777 11997 2.565210 TGTGCAAGCAAAACTCTGTG 57.435 45.000 0.00 0.00 0.00 3.66
5778 11998 1.818060 TGTGCAAGCAAAACTCTGTGT 59.182 42.857 0.00 0.00 0.00 3.72
5779 11999 2.187707 GTGCAAGCAAAACTCTGTGTG 58.812 47.619 0.00 0.00 0.00 3.82
5780 12000 1.203065 GCAAGCAAAACTCTGTGTGC 58.797 50.000 0.00 0.00 37.26 4.57
5781 12001 1.469595 GCAAGCAAAACTCTGTGTGCA 60.470 47.619 8.60 0.00 39.50 4.57
5782 12002 2.187707 CAAGCAAAACTCTGTGTGCAC 58.812 47.619 10.75 10.75 39.50 4.57
5783 12003 0.378257 AGCAAAACTCTGTGTGCACG 59.622 50.000 13.13 0.00 39.50 5.34
5784 12004 0.098728 GCAAAACTCTGTGTGCACGT 59.901 50.000 13.13 0.00 36.97 4.49
5785 12005 1.813896 CAAAACTCTGTGTGCACGTG 58.186 50.000 12.28 12.28 0.00 4.49
5786 12006 1.396648 CAAAACTCTGTGTGCACGTGA 59.603 47.619 22.23 9.04 0.00 4.35
5787 12007 1.732941 AAACTCTGTGTGCACGTGAA 58.267 45.000 22.23 5.66 0.00 3.18
5788 12008 1.732941 AACTCTGTGTGCACGTGAAA 58.267 45.000 22.23 2.99 0.00 2.69
5789 12009 1.732941 ACTCTGTGTGCACGTGAAAA 58.267 45.000 22.23 0.00 0.00 2.29
5790 12010 2.080693 ACTCTGTGTGCACGTGAAAAA 58.919 42.857 22.23 0.00 0.00 1.94
5791 12011 2.095853 ACTCTGTGTGCACGTGAAAAAG 59.904 45.455 22.23 7.40 0.00 2.27
5792 12012 1.400142 TCTGTGTGCACGTGAAAAAGG 59.600 47.619 22.23 0.00 0.00 3.11
5793 12013 1.400142 CTGTGTGCACGTGAAAAAGGA 59.600 47.619 22.23 0.00 0.00 3.36
5794 12014 1.813178 TGTGTGCACGTGAAAAAGGAA 59.187 42.857 22.23 0.00 0.00 3.36
5795 12015 2.182014 GTGTGCACGTGAAAAAGGAAC 58.818 47.619 22.23 4.15 0.00 3.62
5796 12016 1.813178 TGTGCACGTGAAAAAGGAACA 59.187 42.857 22.23 6.69 0.00 3.18
5797 12017 2.425312 TGTGCACGTGAAAAAGGAACAT 59.575 40.909 22.23 0.00 0.00 2.71
5798 12018 2.788786 GTGCACGTGAAAAAGGAACATG 59.211 45.455 22.23 0.00 0.00 3.21
5799 12019 1.786579 GCACGTGAAAAAGGAACATGC 59.213 47.619 22.23 0.00 0.00 4.06
5800 12020 2.543653 GCACGTGAAAAAGGAACATGCT 60.544 45.455 22.23 0.00 0.00 3.79
5801 12021 3.300009 CACGTGAAAAAGGAACATGCTC 58.700 45.455 10.90 0.00 0.00 4.26
5802 12022 2.032030 ACGTGAAAAAGGAACATGCTCG 60.032 45.455 0.00 0.00 0.00 5.03
5803 12023 2.223144 CGTGAAAAAGGAACATGCTCGA 59.777 45.455 0.00 0.00 0.00 4.04
5804 12024 3.665323 CGTGAAAAAGGAACATGCTCGAG 60.665 47.826 8.45 8.45 0.00 4.04
5805 12025 2.813754 TGAAAAAGGAACATGCTCGAGG 59.186 45.455 15.58 0.00 0.00 4.63
5806 12026 1.826385 AAAAGGAACATGCTCGAGGG 58.174 50.000 15.58 0.00 0.00 4.30
5807 12027 0.678048 AAAGGAACATGCTCGAGGGC 60.678 55.000 15.58 1.44 0.00 5.19
5808 12028 1.841302 AAGGAACATGCTCGAGGGCA 61.841 55.000 15.58 8.34 46.63 5.36
5817 12037 2.790433 TGCTCGAGGGCATTTAAAAGT 58.210 42.857 15.58 0.00 37.29 2.66
5818 12038 3.153919 TGCTCGAGGGCATTTAAAAGTT 58.846 40.909 15.58 0.00 37.29 2.66
5819 12039 3.572255 TGCTCGAGGGCATTTAAAAGTTT 59.428 39.130 15.58 0.00 37.29 2.66
5820 12040 4.038642 TGCTCGAGGGCATTTAAAAGTTTT 59.961 37.500 15.58 6.06 37.29 2.43
5821 12041 4.385748 GCTCGAGGGCATTTAAAAGTTTTG 59.614 41.667 15.58 0.00 0.00 2.44
5822 12042 5.523438 TCGAGGGCATTTAAAAGTTTTGT 57.477 34.783 11.18 0.00 0.00 2.83
5823 12043 5.908341 TCGAGGGCATTTAAAAGTTTTGTT 58.092 33.333 11.18 0.00 0.00 2.83
5824 12044 7.040473 TCGAGGGCATTTAAAAGTTTTGTTA 57.960 32.000 11.18 0.00 0.00 2.41
5825 12045 6.919115 TCGAGGGCATTTAAAAGTTTTGTTAC 59.081 34.615 11.18 0.00 0.00 2.50
5826 12046 6.129300 CGAGGGCATTTAAAAGTTTTGTTACG 60.129 38.462 11.18 1.82 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 4890 3.732048 AGGGGAGCCGAAATAGAAAAA 57.268 42.857 0.00 0.00 0.00 1.94
286 4946 7.722363 TCGATCACCTAGAGCACATATTTTAA 58.278 34.615 0.00 0.00 31.47 1.52
287 4947 7.284919 TCGATCACCTAGAGCACATATTTTA 57.715 36.000 0.00 0.00 31.47 1.52
298 4958 1.683385 TGCACCATCGATCACCTAGAG 59.317 52.381 0.00 0.00 0.00 2.43
299 4959 1.775385 TGCACCATCGATCACCTAGA 58.225 50.000 0.00 0.00 0.00 2.43
312 4972 3.501828 GTGACAGTTACATGATTGCACCA 59.498 43.478 0.00 0.00 0.00 4.17
332 4992 2.544685 CTCCGAGCAATTAGGACTGTG 58.455 52.381 0.00 0.00 0.00 3.66
337 4997 1.120530 GACCCTCCGAGCAATTAGGA 58.879 55.000 0.00 0.00 0.00 2.94
339 4999 1.482593 AGTGACCCTCCGAGCAATTAG 59.517 52.381 0.00 0.00 0.00 1.73
389 5049 1.525535 ATCGTCGTCCTCTACCGGG 60.526 63.158 6.32 0.00 0.00 5.73
442 5114 0.946221 CTCGGGACTGAAGTGTGCAC 60.946 60.000 10.75 10.75 0.00 4.57
455 5127 0.179004 ACAACAATGGCAACTCGGGA 60.179 50.000 0.00 0.00 37.61 5.14
469 5141 2.753452 GACGATCTGGAGGAGTACAACA 59.247 50.000 0.00 0.00 0.00 3.33
470 5142 2.099427 GGACGATCTGGAGGAGTACAAC 59.901 54.545 0.00 0.00 0.00 3.32
472 5144 1.564818 AGGACGATCTGGAGGAGTACA 59.435 52.381 0.00 0.00 0.00 2.90
475 5147 0.626382 TGAGGACGATCTGGAGGAGT 59.374 55.000 0.00 0.00 0.00 3.85
483 5155 1.815613 CATAGGCGATGAGGACGATCT 59.184 52.381 0.79 0.00 37.82 2.75
485 5157 1.911057 TCATAGGCGATGAGGACGAT 58.089 50.000 6.17 0.00 39.78 3.73
523 5197 1.790123 CGGTGTCATTATGCGCAACAC 60.790 52.381 26.48 26.48 39.53 3.32
526 5200 0.675208 ACCGGTGTCATTATGCGCAA 60.675 50.000 17.11 0.00 0.00 4.85
529 5203 2.006888 AGAAACCGGTGTCATTATGCG 58.993 47.619 26.62 0.00 0.00 4.73
646 5321 3.058914 CACTGGACCGATGACTCAAAAAC 60.059 47.826 0.00 0.00 0.00 2.43
659 5334 1.470890 ACAAAACAACACACTGGACCG 59.529 47.619 0.00 0.00 0.00 4.79
704 5379 0.255318 CTGGGCAGATTGCTTCTCCT 59.745 55.000 0.67 0.00 44.28 3.69
729 5404 7.607991 GGAGAGAAAATAGGAAATTGACACAGA 59.392 37.037 0.00 0.00 0.00 3.41
734 5409 6.887002 AGTGGGAGAGAAAATAGGAAATTGAC 59.113 38.462 0.00 0.00 0.00 3.18
742 5417 4.944317 GGTGAAAGTGGGAGAGAAAATAGG 59.056 45.833 0.00 0.00 0.00 2.57
942 5619 2.740981 GTTGATGTCACTTGCTGAGAGG 59.259 50.000 0.00 0.00 0.00 3.69
976 5657 0.695347 AGCTACTTTTGCCTGCCTCT 59.305 50.000 0.00 0.00 0.00 3.69
1105 5786 1.679680 GACCCGAGATGTACCGATCAA 59.320 52.381 0.00 0.00 0.00 2.57
1118 5802 2.821366 GGCACATGCTGACCCGAG 60.821 66.667 3.48 0.00 41.70 4.63
1140 5824 3.188492 CTCTCAGATGATCAGCACACAC 58.812 50.000 14.38 0.00 0.00 3.82
1191 5877 0.606401 CCACAAGCACTACCCACAGG 60.606 60.000 0.00 0.00 40.04 4.00
1251 5937 1.306997 AGGGGCCCGAATCAAGAGA 60.307 57.895 18.95 0.00 0.00 3.10
1355 6042 2.425312 TGGCGTGGCTTAATTAATGTGG 59.575 45.455 0.00 0.00 0.00 4.17
1364 6051 0.466555 AAAGTGGTGGCGTGGCTTAA 60.467 50.000 0.00 0.00 0.00 1.85
1365 6052 0.466555 AAAAGTGGTGGCGTGGCTTA 60.467 50.000 0.00 0.00 0.00 3.09
1366 6053 1.326951 AAAAAGTGGTGGCGTGGCTT 61.327 50.000 0.00 0.00 0.00 4.35
1367 6054 1.756561 AAAAAGTGGTGGCGTGGCT 60.757 52.632 0.00 0.00 0.00 4.75
1382 6069 5.184287 ACTGACGTCTTTTTGAAGGGAAAAA 59.816 36.000 17.92 0.00 34.44 1.94
1389 6076 3.309682 TGAGCACTGACGTCTTTTTGAAG 59.690 43.478 17.92 6.19 0.00 3.02
1391 6078 2.899976 TGAGCACTGACGTCTTTTTGA 58.100 42.857 17.92 0.00 0.00 2.69
1398 6085 0.582005 GTGGTTTGAGCACTGACGTC 59.418 55.000 9.11 9.11 42.83 4.34
1399 6086 2.690326 GTGGTTTGAGCACTGACGT 58.310 52.632 0.00 0.00 42.83 4.34
1405 6092 5.371115 TTTAATAGCAGTGGTTTGAGCAC 57.629 39.130 0.00 2.25 46.20 4.40
1410 6097 9.906660 TCTGTTAAATTTAATAGCAGTGGTTTG 57.093 29.630 22.93 4.21 34.41 2.93
1475 6163 6.472163 AGTGAACAAAAACTAAACGAATGCAG 59.528 34.615 0.00 0.00 0.00 4.41
1482 6170 6.183360 ACCAGAGAGTGAACAAAAACTAAACG 60.183 38.462 0.00 0.00 0.00 3.60
1544 6236 4.913924 GCTCGGATTGAATGTGATATTTGC 59.086 41.667 0.00 0.00 0.00 3.68
1597 6289 6.524586 CCGAAACAAAAGTTCATTCTAGATGC 59.475 38.462 0.00 0.00 0.00 3.91
1623 6315 2.365105 TAGCTCTTGGTCCCCCGG 60.365 66.667 0.00 0.00 0.00 5.73
1630 6322 5.624738 CGAAATAGAACCAGTAGCTCTTGGT 60.625 44.000 14.59 14.59 35.99 3.67
1697 6389 5.278808 CCTCATTAACCGACGATTGATAGGA 60.279 44.000 0.00 0.00 0.00 2.94
1704 6396 4.021368 CCTATCCCTCATTAACCGACGATT 60.021 45.833 0.00 0.00 0.00 3.34
1705 6397 3.510360 CCTATCCCTCATTAACCGACGAT 59.490 47.826 0.00 0.00 0.00 3.73
1706 6398 2.889045 CCTATCCCTCATTAACCGACGA 59.111 50.000 0.00 0.00 0.00 4.20
1707 6399 2.889045 TCCTATCCCTCATTAACCGACG 59.111 50.000 0.00 0.00 0.00 5.12
1708 6400 4.950205 TTCCTATCCCTCATTAACCGAC 57.050 45.455 0.00 0.00 0.00 4.79
1709 6401 5.213519 TCTTTCCTATCCCTCATTAACCGA 58.786 41.667 0.00 0.00 0.00 4.69
1710 6402 5.546621 TCTTTCCTATCCCTCATTAACCG 57.453 43.478 0.00 0.00 0.00 4.44
1711 6403 6.659824 TGTTCTTTCCTATCCCTCATTAACC 58.340 40.000 0.00 0.00 0.00 2.85
1712 6404 8.753497 ATTGTTCTTTCCTATCCCTCATTAAC 57.247 34.615 0.00 0.00 0.00 2.01
1713 6405 7.715249 CGATTGTTCTTTCCTATCCCTCATTAA 59.285 37.037 0.00 0.00 0.00 1.40
1714 6406 7.147549 ACGATTGTTCTTTCCTATCCCTCATTA 60.148 37.037 0.00 0.00 0.00 1.90
1715 6407 6.058183 CGATTGTTCTTTCCTATCCCTCATT 58.942 40.000 0.00 0.00 0.00 2.57
1716 6408 5.131142 ACGATTGTTCTTTCCTATCCCTCAT 59.869 40.000 0.00 0.00 0.00 2.90
1717 6409 4.469945 ACGATTGTTCTTTCCTATCCCTCA 59.530 41.667 0.00 0.00 0.00 3.86
1718 6410 5.024785 ACGATTGTTCTTTCCTATCCCTC 57.975 43.478 0.00 0.00 0.00 4.30
1719 6411 4.441634 CGACGATTGTTCTTTCCTATCCCT 60.442 45.833 0.00 0.00 0.00 4.20
1720 6412 3.802685 CGACGATTGTTCTTTCCTATCCC 59.197 47.826 0.00 0.00 0.00 3.85
1721 6413 3.802685 CCGACGATTGTTCTTTCCTATCC 59.197 47.826 0.00 0.00 0.00 2.59
1722 6414 4.430908 ACCGACGATTGTTCTTTCCTATC 58.569 43.478 0.00 0.00 0.00 2.08
1723 6415 4.467198 ACCGACGATTGTTCTTTCCTAT 57.533 40.909 0.00 0.00 0.00 2.57
1724 6416 3.947910 ACCGACGATTGTTCTTTCCTA 57.052 42.857 0.00 0.00 0.00 2.94
1725 6417 2.833631 ACCGACGATTGTTCTTTCCT 57.166 45.000 0.00 0.00 0.00 3.36
1726 6418 4.996062 TTAACCGACGATTGTTCTTTCC 57.004 40.909 0.00 0.00 0.00 3.13
1727 6419 7.578024 CGATTATTAACCGACGATTGTTCTTTC 59.422 37.037 0.00 0.00 0.00 2.62
1728 6420 7.063780 ACGATTATTAACCGACGATTGTTCTTT 59.936 33.333 0.00 0.00 0.00 2.52
1729 6421 6.532657 ACGATTATTAACCGACGATTGTTCTT 59.467 34.615 0.00 0.00 0.00 2.52
1730 6422 6.038356 ACGATTATTAACCGACGATTGTTCT 58.962 36.000 0.00 0.00 0.00 3.01
1731 6423 6.264909 ACGATTATTAACCGACGATTGTTC 57.735 37.500 0.00 0.00 0.00 3.18
1732 6424 6.455913 CCAACGATTATTAACCGACGATTGTT 60.456 38.462 0.00 0.00 0.00 2.83
1733 6425 5.005971 CCAACGATTATTAACCGACGATTGT 59.994 40.000 0.00 0.00 0.00 2.71
1734 6426 5.232626 TCCAACGATTATTAACCGACGATTG 59.767 40.000 0.00 0.00 0.00 2.67
1735 6427 5.350633 TCCAACGATTATTAACCGACGATT 58.649 37.500 0.00 0.00 0.00 3.34
1736 6428 4.935702 TCCAACGATTATTAACCGACGAT 58.064 39.130 0.00 0.00 0.00 3.73
1737 6429 4.353737 CTCCAACGATTATTAACCGACGA 58.646 43.478 0.00 0.00 0.00 4.20
1738 6430 3.488310 CCTCCAACGATTATTAACCGACG 59.512 47.826 0.00 0.00 0.00 5.12
1739 6431 4.685924 TCCTCCAACGATTATTAACCGAC 58.314 43.478 0.00 0.00 0.00 4.79
1740 6432 5.127519 TCTTCCTCCAACGATTATTAACCGA 59.872 40.000 0.00 0.00 0.00 4.69
1741 6433 5.353938 TCTTCCTCCAACGATTATTAACCG 58.646 41.667 0.00 0.00 0.00 4.44
1742 6434 6.596497 TGTTCTTCCTCCAACGATTATTAACC 59.404 38.462 0.00 0.00 0.00 2.85
1743 6435 7.605410 TGTTCTTCCTCCAACGATTATTAAC 57.395 36.000 0.00 0.00 0.00 2.01
1744 6436 8.044309 TGATGTTCTTCCTCCAACGATTATTAA 58.956 33.333 0.00 0.00 0.00 1.40
1745 6437 7.561251 TGATGTTCTTCCTCCAACGATTATTA 58.439 34.615 0.00 0.00 0.00 0.98
1746 6438 6.414732 TGATGTTCTTCCTCCAACGATTATT 58.585 36.000 0.00 0.00 0.00 1.40
1747 6439 5.989477 TGATGTTCTTCCTCCAACGATTAT 58.011 37.500 0.00 0.00 0.00 1.28
1748 6440 5.414789 TGATGTTCTTCCTCCAACGATTA 57.585 39.130 0.00 0.00 0.00 1.75
1749 6441 4.286297 TGATGTTCTTCCTCCAACGATT 57.714 40.909 0.00 0.00 0.00 3.34
1750 6442 3.981071 TGATGTTCTTCCTCCAACGAT 57.019 42.857 0.00 0.00 0.00 3.73
1751 6443 3.981071 ATGATGTTCTTCCTCCAACGA 57.019 42.857 0.00 0.00 0.00 3.85
1752 6444 5.376854 AAAATGATGTTCTTCCTCCAACG 57.623 39.130 0.00 0.00 0.00 4.10
1753 6445 6.350194 GGGTAAAATGATGTTCTTCCTCCAAC 60.350 42.308 0.00 0.00 0.00 3.77
1754 6446 5.714806 GGGTAAAATGATGTTCTTCCTCCAA 59.285 40.000 0.00 0.00 0.00 3.53
1755 6447 5.015178 AGGGTAAAATGATGTTCTTCCTCCA 59.985 40.000 0.00 0.00 0.00 3.86
1756 6448 5.510430 AGGGTAAAATGATGTTCTTCCTCC 58.490 41.667 0.00 0.00 0.00 4.30
1757 6449 7.610305 TGTTAGGGTAAAATGATGTTCTTCCTC 59.390 37.037 0.00 0.00 0.00 3.71
1758 6450 7.466804 TGTTAGGGTAAAATGATGTTCTTCCT 58.533 34.615 0.00 0.00 0.00 3.36
1759 6451 7.696992 TGTTAGGGTAAAATGATGTTCTTCC 57.303 36.000 0.00 0.00 0.00 3.46
1768 6460 9.967451 TGAGAACATATTGTTAGGGTAAAATGA 57.033 29.630 0.00 0.00 41.28 2.57
1801 6493 4.730966 TGTTAATGTAACAAGGAGGCCAA 58.269 39.130 5.01 0.00 44.95 4.52
1841 6534 6.489700 TCATGTATTGTTGATGTGGTTGTTCT 59.510 34.615 0.00 0.00 0.00 3.01
1845 6538 6.258230 ACTCATGTATTGTTGATGTGGTTG 57.742 37.500 0.00 0.00 0.00 3.77
1849 6542 8.255394 TGAGTAACTCATGTATTGTTGATGTG 57.745 34.615 0.00 0.00 35.39 3.21
1850 6543 8.846943 TTGAGTAACTCATGTATTGTTGATGT 57.153 30.769 0.00 0.00 40.39 3.06
1857 6550 5.525378 GGCCTCTTGAGTAACTCATGTATTG 59.475 44.000 0.00 0.00 40.39 1.90
1888 6581 4.408182 AGATAAACTCCAACCAGATCCG 57.592 45.455 0.00 0.00 0.00 4.18
1896 6589 6.623767 GCATGTGAGGAAAGATAAACTCCAAC 60.624 42.308 0.00 0.00 0.00 3.77
1914 6607 3.938963 GAGGAAAACCTATTCGCATGTGA 59.061 43.478 4.45 4.45 0.00 3.58
2021 7588 6.881602 GGAAATACTCCCTAGAGGCAATAATG 59.118 42.308 0.00 0.00 45.11 1.90
2037 7604 8.391106 GTGATGTCACTATTGTTGGAAATACTC 58.609 37.037 5.91 0.00 43.25 2.59
2038 7605 7.336931 GGTGATGTCACTATTGTTGGAAATACT 59.663 37.037 12.43 0.00 45.73 2.12
2062 7629 2.514458 CCTTGTTGCAGATAAGGGGT 57.486 50.000 14.53 0.00 41.55 4.95
2068 7635 1.367346 TGGACCCCTTGTTGCAGATA 58.633 50.000 0.00 0.00 0.00 1.98
2078 7645 2.845345 CCTGCCACTTGGACCCCTT 61.845 63.158 0.00 0.00 37.39 3.95
2115 7682 6.481643 ACATTACTAAAGGTGCCACTATTGT 58.518 36.000 0.00 0.00 0.00 2.71
2119 7686 4.781087 AGGACATTACTAAAGGTGCCACTA 59.219 41.667 0.00 0.00 38.34 2.74
2137 7704 2.501723 GGTAGAGCTCATTTGGAGGACA 59.498 50.000 17.77 0.00 44.22 4.02
2139 7706 3.034635 GAGGTAGAGCTCATTTGGAGGA 58.965 50.000 17.77 0.00 44.22 3.71
2156 7723 2.040412 GTTGGAACTTGAGGATGGAGGT 59.960 50.000 0.00 0.00 0.00 3.85
2162 7729 1.978580 AGGTCGTTGGAACTTGAGGAT 59.021 47.619 0.00 0.00 36.62 3.24
2179 7746 4.520492 GGTGACATTGTTTCTCATCAAGGT 59.480 41.667 0.00 0.00 40.38 3.50
2180 7747 4.378770 CGGTGACATTGTTTCTCATCAAGG 60.379 45.833 0.00 0.00 0.00 3.61
2231 7798 3.959535 TTGGAATGGAGAAATTGTGCC 57.040 42.857 0.00 0.00 0.00 5.01
2268 7835 3.491447 GCTCCAAATGTGTGCTCAGTTTT 60.491 43.478 0.00 0.00 0.00 2.43
2431 8046 1.611673 CCGATGCTCTTGGTCAGGTTT 60.612 52.381 0.00 0.00 0.00 3.27
2436 8051 0.829990 TATGCCGATGCTCTTGGTCA 59.170 50.000 0.00 0.00 38.71 4.02
2509 8124 2.094675 AGCACATGAAAAATCTCCCGG 58.905 47.619 0.00 0.00 0.00 5.73
2518 8133 8.610896 CCATGTTTTTCTTTTAGCACATGAAAA 58.389 29.630 10.87 0.00 42.69 2.29
2671 8286 2.472695 AATTTGTAGTCGCAGCTCCA 57.527 45.000 0.00 0.00 0.00 3.86
2709 8325 3.799137 GCAATGTGCAACCAGAAAATG 57.201 42.857 0.00 0.00 44.26 2.32
2930 8992 6.986817 AGTAATGTTATGGACACTGACATAGC 59.013 38.462 0.00 0.00 42.04 2.97
3033 9095 7.660617 ACATCATATCTGAAAAGGTAGCATCAG 59.339 37.037 13.19 13.19 40.46 2.90
3187 9267 8.443176 AGAATGTCATGATATACCACCAAATCT 58.557 33.333 5.27 0.00 0.00 2.40
3189 9269 8.219868 TCAGAATGTCATGATATACCACCAAAT 58.780 33.333 5.27 0.00 37.40 2.32
3252 9342 2.756207 TGTTCACCAGCTACATACGCTA 59.244 45.455 0.00 0.00 35.63 4.26
3317 9407 2.513753 CAGATGTGTGCCCACCTTTAA 58.486 47.619 0.00 0.00 41.09 1.52
3370 9460 3.412386 AGCTTTTAGTTCTCGCATGGTT 58.588 40.909 0.00 0.00 0.00 3.67
3415 9505 3.532641 AGCTCCTTCATGGTTTTCCTT 57.467 42.857 0.00 0.00 41.38 3.36
3739 9863 7.940137 AGTGTTGTACATTGTTGTTAAGGGATA 59.060 33.333 0.00 0.00 37.28 2.59
3741 9865 6.123651 AGTGTTGTACATTGTTGTTAAGGGA 58.876 36.000 0.00 0.00 37.28 4.20
3742 9866 6.385649 AGTGTTGTACATTGTTGTTAAGGG 57.614 37.500 0.00 0.00 37.28 3.95
3907 10070 8.187913 TCACCAAGTTTCATTCCAAATATTGA 57.812 30.769 0.00 0.00 0.00 2.57
3911 10074 6.553100 ACCTTCACCAAGTTTCATTCCAAATA 59.447 34.615 0.00 0.00 0.00 1.40
3939 10104 9.701098 CATGAACTGTAGTTGGTTACTTACTTA 57.299 33.333 1.35 0.00 38.56 2.24
4222 10404 1.338769 GGGAAGCATGTACTTGACGGT 60.339 52.381 12.65 0.00 0.00 4.83
4332 10514 6.361433 TGATTGTAGGAGAAGAAAACCACAA 58.639 36.000 0.00 0.00 33.31 3.33
4629 10823 9.525409 GATTGATAAAATCAGGTCAAAGAATGG 57.475 33.333 0.00 0.00 40.94 3.16
4641 10835 9.635520 AAAGCTTCACAAGATTGATAAAATCAG 57.364 29.630 0.00 0.00 40.94 2.90
4700 10894 9.829507 TTGTTATTTTGATTGTCCTTGTTCATT 57.170 25.926 0.00 0.00 0.00 2.57
4839 11033 2.615493 CCGCACTGGGAAATTGTCTAGT 60.615 50.000 0.00 0.00 0.00 2.57
4841 11035 1.349688 ACCGCACTGGGAAATTGTCTA 59.650 47.619 0.00 0.00 44.64 2.59
4843 11037 1.816074 TACCGCACTGGGAAATTGTC 58.184 50.000 0.00 0.00 44.64 3.18
4844 11038 1.883926 GTTACCGCACTGGGAAATTGT 59.116 47.619 0.00 0.00 44.27 2.71
4848 11042 2.093341 GGATAGTTACCGCACTGGGAAA 60.093 50.000 0.00 0.00 44.27 3.13
4851 11045 0.828022 TGGATAGTTACCGCACTGGG 59.172 55.000 0.00 0.00 44.64 4.45
5003 11203 2.210961 GCCCATACTACGCTCTTTTCC 58.789 52.381 0.00 0.00 0.00 3.13
5121 11321 4.633126 GGCATGATGCGTGATGATATACTT 59.367 41.667 11.75 0.00 46.21 2.24
5132 11332 0.659427 CTAAGTGGGCATGATGCGTG 59.341 55.000 11.75 0.00 46.21 5.34
5133 11333 0.253044 ACTAAGTGGGCATGATGCGT 59.747 50.000 11.75 0.00 46.21 5.24
5134 11334 1.064505 CAACTAAGTGGGCATGATGCG 59.935 52.381 11.75 0.00 46.21 4.73
5135 11335 2.368439 TCAACTAAGTGGGCATGATGC 58.632 47.619 9.33 9.33 44.08 3.91
5136 11336 4.264253 TCTTCAACTAAGTGGGCATGATG 58.736 43.478 0.00 0.00 36.51 3.07
5137 11337 4.574674 TCTTCAACTAAGTGGGCATGAT 57.425 40.909 0.00 0.00 36.51 2.45
5138 11338 4.263462 ACATCTTCAACTAAGTGGGCATGA 60.263 41.667 0.00 0.00 36.51 3.07
5139 11339 4.012374 ACATCTTCAACTAAGTGGGCATG 58.988 43.478 0.00 0.00 36.51 4.06
5149 11349 7.865385 GCACCAAATGTTTAACATCTTCAACTA 59.135 33.333 11.24 0.00 37.97 2.24
5166 11366 0.458889 CATCCGCCTTGCACCAAATG 60.459 55.000 0.00 0.00 0.00 2.32
5204 11404 6.706270 TCGCTTAATTTTTCTCTTGACAGAGT 59.294 34.615 0.00 0.00 46.24 3.24
5210 11410 4.759693 TGGCTCGCTTAATTTTTCTCTTGA 59.240 37.500 0.00 0.00 0.00 3.02
5212 11412 5.705609 TTGGCTCGCTTAATTTTTCTCTT 57.294 34.783 0.00 0.00 0.00 2.85
5331 11533 9.030301 GCAAAACTGCTAGAAATTTTTACAAGA 57.970 29.630 0.00 0.00 0.00 3.02
5341 11543 7.307337 CGGAAATTTTGCAAAACTGCTAGAAAT 60.307 33.333 26.05 4.19 35.49 2.17
5362 11564 2.167693 AGCTTCGATATGTCCACGGAAA 59.832 45.455 0.00 0.00 0.00 3.13
5374 11576 0.533531 CATGCCCTGCAGCTTCGATA 60.534 55.000 8.66 0.00 43.65 2.92
5378 11580 2.413142 GGTCATGCCCTGCAGCTTC 61.413 63.158 8.66 0.00 43.65 3.86
5382 11584 0.471191 TGATAGGTCATGCCCTGCAG 59.529 55.000 5.31 6.78 43.65 4.41
5424 11627 3.118702 TGTGAACTAAAGACCGTGTCCAA 60.119 43.478 1.06 0.00 32.18 3.53
5425 11628 2.431419 TGTGAACTAAAGACCGTGTCCA 59.569 45.455 1.06 0.00 32.18 4.02
5426 11629 3.102052 TGTGAACTAAAGACCGTGTCC 57.898 47.619 1.06 0.00 32.18 4.02
5427 11630 4.117685 AGTTGTGAACTAAAGACCGTGTC 58.882 43.478 0.00 0.00 40.69 3.67
5428 11631 4.133013 AGTTGTGAACTAAAGACCGTGT 57.867 40.909 0.00 0.00 40.69 4.49
5429 11632 5.064198 TCAAAGTTGTGAACTAAAGACCGTG 59.936 40.000 0.00 0.00 41.91 4.94
5430 11633 5.180271 TCAAAGTTGTGAACTAAAGACCGT 58.820 37.500 0.00 0.00 41.91 4.83
5431 11634 5.728351 TCAAAGTTGTGAACTAAAGACCG 57.272 39.130 0.00 0.00 41.91 4.79
5469 11688 9.216087 CTGATAGATTTCGTATAAGCATACTCG 57.784 37.037 0.00 0.00 35.76 4.18
5495 11714 6.884836 ACTTATTTTGTGATGGAGGGAGTAAC 59.115 38.462 0.00 0.00 0.00 2.50
5507 11726 6.683974 AATCAGCGCTACTTATTTTGTGAT 57.316 33.333 10.99 1.48 0.00 3.06
5510 11729 7.611213 ACTAAATCAGCGCTACTTATTTTGT 57.389 32.000 10.99 16.46 34.91 2.83
5521 11740 7.980099 AGTACAACTTTATACTAAATCAGCGCT 59.020 33.333 2.64 2.64 29.70 5.92
5522 11741 8.128016 AGTACAACTTTATACTAAATCAGCGC 57.872 34.615 0.00 0.00 29.70 5.92
5536 11755 5.587844 TGCCGTTGGTTTTAGTACAACTTTA 59.412 36.000 0.00 0.00 41.60 1.85
5549 11768 3.363341 CAACATAAGTGCCGTTGGTTT 57.637 42.857 0.00 0.00 37.07 3.27
5556 11775 1.366111 CCGTCCCAACATAAGTGCCG 61.366 60.000 0.00 0.00 0.00 5.69
5558 11777 1.369625 CTCCGTCCCAACATAAGTGC 58.630 55.000 0.00 0.00 0.00 4.40
5566 11785 1.201424 AATACTCCCTCCGTCCCAAC 58.799 55.000 0.00 0.00 0.00 3.77
5593 11812 9.656040 TTCGTTACCTCTATATTGTGCTTTTAA 57.344 29.630 0.00 0.00 0.00 1.52
5602 11821 8.756864 GCTTTTCTCTTCGTTACCTCTATATTG 58.243 37.037 0.00 0.00 0.00 1.90
5617 11836 9.038803 ACAATGAATTTTTCAGCTTTTCTCTTC 57.961 29.630 0.00 0.00 43.98 2.87
5639 11859 7.716998 CACAAGATCAAGGGCTAGTATAACAAT 59.283 37.037 0.00 0.00 0.00 2.71
5640 11860 7.047891 CACAAGATCAAGGGCTAGTATAACAA 58.952 38.462 0.00 0.00 0.00 2.83
5649 11869 2.265367 TGTCCACAAGATCAAGGGCTA 58.735 47.619 0.00 0.00 0.00 3.93
5650 11870 1.067295 TGTCCACAAGATCAAGGGCT 58.933 50.000 0.00 0.00 0.00 5.19
5669 11889 9.394477 GTGCTAGTCGTTTCTTAATTTTGAAAT 57.606 29.630 8.21 0.00 35.13 2.17
5694 11914 1.807139 TGCAACGCACAGACATATGT 58.193 45.000 8.43 8.43 31.71 2.29
5695 11915 2.508867 GTTGCAACGCACAGACATATG 58.491 47.619 14.90 0.00 38.71 1.78
5696 11916 1.128507 CGTTGCAACGCACAGACATAT 59.871 47.619 35.89 0.00 46.06 1.78
5697 11917 0.510790 CGTTGCAACGCACAGACATA 59.489 50.000 35.89 0.00 46.06 2.29
5698 11918 1.279539 CGTTGCAACGCACAGACAT 59.720 52.632 35.89 0.00 46.06 3.06
5699 11919 2.706432 CGTTGCAACGCACAGACA 59.294 55.556 35.89 0.00 46.06 3.41
5740 11960 8.616076 GCTTGCACATATAACTCTCAATAACTT 58.384 33.333 0.00 0.00 0.00 2.66
5741 11961 7.770433 TGCTTGCACATATAACTCTCAATAACT 59.230 33.333 0.00 0.00 0.00 2.24
5742 11962 7.919690 TGCTTGCACATATAACTCTCAATAAC 58.080 34.615 0.00 0.00 0.00 1.89
5743 11963 8.504812 TTGCTTGCACATATAACTCTCAATAA 57.495 30.769 0.00 0.00 0.00 1.40
5744 11964 8.504812 TTTGCTTGCACATATAACTCTCAATA 57.495 30.769 0.00 0.00 0.00 1.90
5745 11965 7.395190 TTTGCTTGCACATATAACTCTCAAT 57.605 32.000 0.00 0.00 0.00 2.57
5746 11966 6.816134 TTTGCTTGCACATATAACTCTCAA 57.184 33.333 0.00 0.00 0.00 3.02
5747 11967 6.430925 AGTTTTGCTTGCACATATAACTCTCA 59.569 34.615 0.00 0.00 0.00 3.27
5748 11968 6.846350 AGTTTTGCTTGCACATATAACTCTC 58.154 36.000 0.00 0.00 0.00 3.20
5749 11969 6.656693 AGAGTTTTGCTTGCACATATAACTCT 59.343 34.615 19.27 19.27 43.24 3.24
5750 11970 6.744537 CAGAGTTTTGCTTGCACATATAACTC 59.255 38.462 16.52 16.52 40.11 3.01
5751 11971 6.207417 ACAGAGTTTTGCTTGCACATATAACT 59.793 34.615 0.00 0.00 0.00 2.24
5752 11972 6.306356 CACAGAGTTTTGCTTGCACATATAAC 59.694 38.462 0.00 0.00 0.00 1.89
5753 11973 6.016360 ACACAGAGTTTTGCTTGCACATATAA 60.016 34.615 0.00 0.00 0.00 0.98
5754 11974 5.473162 ACACAGAGTTTTGCTTGCACATATA 59.527 36.000 0.00 0.00 0.00 0.86
5755 11975 4.279169 ACACAGAGTTTTGCTTGCACATAT 59.721 37.500 0.00 0.00 0.00 1.78
5756 11976 3.631686 ACACAGAGTTTTGCTTGCACATA 59.368 39.130 0.00 0.00 0.00 2.29
5757 11977 2.428171 ACACAGAGTTTTGCTTGCACAT 59.572 40.909 0.00 0.00 0.00 3.21
5758 11978 1.818060 ACACAGAGTTTTGCTTGCACA 59.182 42.857 0.00 0.00 0.00 4.57
5759 11979 2.187707 CACACAGAGTTTTGCTTGCAC 58.812 47.619 0.00 0.00 0.00 4.57
5760 11980 1.469595 GCACACAGAGTTTTGCTTGCA 60.470 47.619 0.00 0.00 32.30 4.08
5761 11981 1.203065 GCACACAGAGTTTTGCTTGC 58.797 50.000 0.00 0.00 32.00 4.01
5762 11982 2.187707 GTGCACACAGAGTTTTGCTTG 58.812 47.619 13.17 0.00 35.91 4.01
5763 11983 1.202177 CGTGCACACAGAGTTTTGCTT 60.202 47.619 18.64 0.00 35.91 3.91
5764 11984 0.378257 CGTGCACACAGAGTTTTGCT 59.622 50.000 18.64 0.00 35.91 3.91
5765 11985 0.098728 ACGTGCACACAGAGTTTTGC 59.901 50.000 18.64 0.00 35.45 3.68
5766 11986 1.396648 TCACGTGCACACAGAGTTTTG 59.603 47.619 18.64 0.00 0.00 2.44
5767 11987 1.732941 TCACGTGCACACAGAGTTTT 58.267 45.000 18.64 0.00 0.00 2.43
5768 11988 1.732941 TTCACGTGCACACAGAGTTT 58.267 45.000 18.64 0.00 0.00 2.66
5769 11989 1.732941 TTTCACGTGCACACAGAGTT 58.267 45.000 18.64 0.00 0.00 3.01
5770 11990 1.732941 TTTTCACGTGCACACAGAGT 58.267 45.000 18.64 2.75 0.00 3.24
5771 11991 2.539547 CCTTTTTCACGTGCACACAGAG 60.540 50.000 18.64 2.02 0.00 3.35
5772 11992 1.400142 CCTTTTTCACGTGCACACAGA 59.600 47.619 18.64 8.22 0.00 3.41
5773 11993 1.400142 TCCTTTTTCACGTGCACACAG 59.600 47.619 18.64 5.72 0.00 3.66
5774 11994 1.454201 TCCTTTTTCACGTGCACACA 58.546 45.000 18.64 0.00 0.00 3.72
5775 11995 2.182014 GTTCCTTTTTCACGTGCACAC 58.818 47.619 18.64 0.00 0.00 3.82
5776 11996 1.813178 TGTTCCTTTTTCACGTGCACA 59.187 42.857 18.64 0.00 0.00 4.57
5777 11997 2.553079 TGTTCCTTTTTCACGTGCAC 57.447 45.000 11.67 6.82 0.00 4.57
5778 11998 3.077229 CATGTTCCTTTTTCACGTGCA 57.923 42.857 11.67 0.00 0.00 4.57
5779 11999 1.786579 GCATGTTCCTTTTTCACGTGC 59.213 47.619 11.67 0.29 44.02 5.34
5780 12000 3.300009 GAGCATGTTCCTTTTTCACGTG 58.700 45.455 9.94 9.94 0.00 4.49
5781 12001 2.032030 CGAGCATGTTCCTTTTTCACGT 60.032 45.455 3.76 0.00 0.00 4.49
5782 12002 2.223144 TCGAGCATGTTCCTTTTTCACG 59.777 45.455 3.76 0.00 0.00 4.35
5783 12003 3.365364 CCTCGAGCATGTTCCTTTTTCAC 60.365 47.826 6.99 0.00 0.00 3.18
5784 12004 2.813754 CCTCGAGCATGTTCCTTTTTCA 59.186 45.455 6.99 0.00 0.00 2.69
5785 12005 2.162408 CCCTCGAGCATGTTCCTTTTTC 59.838 50.000 6.99 0.00 0.00 2.29
5786 12006 2.162681 CCCTCGAGCATGTTCCTTTTT 58.837 47.619 6.99 0.00 0.00 1.94
5787 12007 1.826385 CCCTCGAGCATGTTCCTTTT 58.174 50.000 6.99 0.00 0.00 2.27
5788 12008 0.678048 GCCCTCGAGCATGTTCCTTT 60.678 55.000 6.99 0.00 0.00 3.11
5789 12009 1.078143 GCCCTCGAGCATGTTCCTT 60.078 57.895 6.99 0.00 0.00 3.36
5790 12010 2.293318 TGCCCTCGAGCATGTTCCT 61.293 57.895 6.99 0.00 38.00 3.36
5791 12011 2.268920 TGCCCTCGAGCATGTTCC 59.731 61.111 6.99 0.00 38.00 3.62
5798 12018 3.850122 AACTTTTAAATGCCCTCGAGC 57.150 42.857 6.99 0.00 0.00 5.03
5799 12019 5.528870 ACAAAACTTTTAAATGCCCTCGAG 58.471 37.500 5.13 5.13 0.00 4.04
5800 12020 5.523438 ACAAAACTTTTAAATGCCCTCGA 57.477 34.783 1.19 0.00 0.00 4.04
5801 12021 6.129300 CGTAACAAAACTTTTAAATGCCCTCG 60.129 38.462 1.19 0.00 0.00 4.63
5802 12022 7.100829 CGTAACAAAACTTTTAAATGCCCTC 57.899 36.000 1.19 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.