Multiple sequence alignment - TraesCS3B01G015800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G015800 chr3B 100.000 3101 0 0 1 3101 6532011 6535111 0.000000e+00 5727.0
1 TraesCS3B01G015800 chr3B 84.149 776 84 25 1849 2613 6337600 6338347 0.000000e+00 715.0
2 TraesCS3B01G015800 chr3B 86.047 602 69 10 1849 2439 6406721 6407318 1.570000e-177 632.0
3 TraesCS3B01G015800 chr3B 86.364 418 47 8 1849 2265 6469868 6470276 6.100000e-122 448.0
4 TraesCS3B01G015800 chr3B 79.758 662 62 38 297 939 6336278 6336886 6.190000e-112 414.0
5 TraesCS3B01G015800 chr3B 87.366 372 33 9 278 646 6405353 6405713 6.190000e-112 414.0
6 TraesCS3B01G015800 chr3B 79.939 653 56 41 688 1270 6468199 6468846 8.000000e-111 411.0
7 TraesCS3B01G015800 chr3B 88.545 323 36 1 2474 2796 6413043 6413364 1.040000e-104 390.0
8 TraesCS3B01G015800 chr3B 81.441 458 53 13 186 641 6467761 6468188 2.290000e-91 346.0
9 TraesCS3B01G015800 chr3B 90.476 231 22 0 973 1203 6336887 6337117 3.890000e-79 305.0
10 TraesCS3B01G015800 chr3B 90.000 230 23 0 974 1203 6405992 6406221 6.500000e-77 298.0
11 TraesCS3B01G015800 chr3B 90.667 225 17 2 2643 2864 6338345 6338568 2.340000e-76 296.0
12 TraesCS3B01G015800 chr3B 80.800 375 49 15 64 426 344335553 344335916 3.940000e-69 272.0
13 TraesCS3B01G015800 chr3B 87.293 181 21 2 1658 1837 6337354 6337533 4.050000e-49 206.0
14 TraesCS3B01G015800 chr3B 87.293 181 21 2 1658 1837 6406474 6406653 4.050000e-49 206.0
15 TraesCS3B01G015800 chr3B 84.831 178 24 3 1288 1463 6469000 6469176 3.180000e-40 176.0
16 TraesCS3B01G015800 chr3B 93.814 97 6 0 1288 1384 6337184 6337280 2.490000e-31 147.0
17 TraesCS3B01G015800 chr3B 93.000 100 7 0 1288 1387 6406306 6406405 2.490000e-31 147.0
18 TraesCS3B01G015800 chr3B 97.059 68 2 0 2797 2864 6415426 6415493 7.030000e-22 115.0
19 TraesCS3B01G015800 chr3A 87.595 1048 106 13 1849 2877 9631151 9632193 0.000000e+00 1194.0
20 TraesCS3B01G015800 chr3A 81.211 793 93 36 165 939 9627153 9627907 3.440000e-164 588.0
21 TraesCS3B01G015800 chr3A 88.696 230 26 0 974 1203 9627909 9628138 6.550000e-72 281.0
22 TraesCS3B01G015800 chr3D 89.066 878 36 16 561 1407 4133918 4134766 0.000000e+00 1035.0
23 TraesCS3B01G015800 chr3D 88.830 752 74 5 2274 3016 4136217 4136967 0.000000e+00 915.0
24 TraesCS3B01G015800 chr3D 85.775 703 61 13 1592 2265 4134804 4135496 0.000000e+00 708.0
25 TraesCS3B01G015800 chr3D 83.234 835 61 29 469 1270 4138253 4139041 0.000000e+00 693.0
26 TraesCS3B01G015800 chr3D 87.845 543 60 5 2340 2877 4156808 4157349 1.570000e-177 632.0
27 TraesCS3B01G015800 chr3D 83.595 573 70 15 82 646 4111001 4111557 1.650000e-142 516.0
28 TraesCS3B01G015800 chr3D 83.750 560 50 17 1592 2123 4139357 4139903 2.780000e-135 492.0
29 TraesCS3B01G015800 chr3D 87.139 381 41 4 1849 2229 4112593 4112965 2.860000e-115 425.0
30 TraesCS3B01G015800 chr3D 90.435 230 22 0 974 1203 4111836 4112065 1.400000e-78 303.0
31 TraesCS3B01G015800 chr3D 86.286 175 23 1 1431 1604 128214006 128214180 4.080000e-44 189.0
32 TraesCS3B01G015800 chr3D 94.167 120 7 0 1288 1407 4139200 4139319 1.900000e-42 183.0
33 TraesCS3B01G015800 chr3D 89.130 138 10 4 2125 2258 4153163 4153299 1.910000e-37 167.0
34 TraesCS3B01G015800 chr3D 93.578 109 7 0 1289 1397 4112155 4112263 2.470000e-36 163.0
35 TraesCS3B01G015800 chr3D 90.909 66 5 1 486 551 4133863 4133927 1.530000e-13 87.9
36 TraesCS3B01G015800 chrUn 86.364 418 47 8 1849 2265 35829079 35829487 6.100000e-122 448.0
37 TraesCS3B01G015800 chrUn 79.939 653 56 41 688 1270 35827410 35828057 8.000000e-111 411.0
38 TraesCS3B01G015800 chrUn 81.441 458 53 13 186 641 35826972 35827399 2.290000e-91 346.0
39 TraesCS3B01G015800 chrUn 84.831 178 24 3 1288 1463 35828211 35828387 3.180000e-40 176.0
40 TraesCS3B01G015800 chr2D 80.410 439 55 23 1668 2098 620614529 620614944 3.890000e-79 305.0
41 TraesCS3B01G015800 chr2D 80.000 370 55 14 1010 1369 585860394 585860754 3.970000e-64 255.0
42 TraesCS3B01G015800 chr2D 89.375 160 16 1 1432 1591 373883595 373883437 1.890000e-47 200.0
43 TraesCS3B01G015800 chr2D 83.854 192 27 4 1431 1619 104258220 104258030 2.460000e-41 180.0
44 TraesCS3B01G015800 chr1B 82.210 371 49 10 68 428 566830034 566830397 1.400000e-78 303.0
45 TraesCS3B01G015800 chr1B 80.172 232 30 8 1432 1647 412897413 412897644 3.200000e-35 159.0
46 TraesCS3B01G015800 chr1B 92.500 40 3 0 1608 1647 571834125 571834086 1.200000e-04 58.4
47 TraesCS3B01G015800 chr5A 87.209 258 33 0 1859 2116 699320079 699320336 8.410000e-76 294.0
48 TraesCS3B01G015800 chr5A 93.902 82 5 0 1660 1741 699318700 699318781 1.170000e-24 124.0
49 TraesCS3B01G015800 chr5A 85.345 116 3 3 509 624 699313887 699313988 1.180000e-19 108.0
50 TraesCS3B01G015800 chr2B 81.333 375 45 20 1010 1369 707377354 707377718 6.550000e-72 281.0
51 TraesCS3B01G015800 chr2B 87.349 166 21 0 1429 1594 477809464 477809629 1.140000e-44 191.0
52 TraesCS3B01G015800 chr2B 76.582 316 53 15 64 373 749849497 749849797 1.490000e-33 154.0
53 TraesCS3B01G015800 chr1D 81.016 374 53 8 68 430 419721841 419722207 6.550000e-72 281.0
54 TraesCS3B01G015800 chr1D 88.957 163 16 2 1432 1593 39576014 39576175 1.890000e-47 200.0
55 TraesCS3B01G015800 chr1D 95.122 41 2 0 1607 1647 422983758 422983718 7.180000e-07 65.8
56 TraesCS3B01G015800 chr7D 80.267 375 53 12 64 426 138286520 138286885 2.370000e-66 263.0
57 TraesCS3B01G015800 chr5B 80.053 376 57 11 64 428 508290642 508290274 2.370000e-66 263.0
58 TraesCS3B01G015800 chr4A 79.310 377 56 13 64 428 10219982 10219616 8.590000e-61 244.0
59 TraesCS3B01G015800 chr4A 85.185 54 7 1 1602 1654 246711254 246711307 2.000000e-03 54.7
60 TraesCS3B01G015800 chr1A 79.586 338 53 10 97 427 577938889 577939217 8.650000e-56 228.0
61 TraesCS3B01G015800 chr1A 92.683 41 3 0 1607 1647 518934641 518934601 3.340000e-05 60.2
62 TraesCS3B01G015800 chr7A 90.123 162 14 1 1432 1593 91646168 91646327 3.130000e-50 209.0
63 TraesCS3B01G015800 chr7A 87.209 172 21 1 1430 1601 1528797 1528627 8.770000e-46 195.0
64 TraesCS3B01G015800 chr4D 87.209 172 21 1 1432 1602 421331072 421331243 8.770000e-46 195.0
65 TraesCS3B01G015800 chr4D 94.444 36 1 1 1620 1654 139045043 139045008 2.000000e-03 54.7
66 TraesCS3B01G015800 chr2A 88.415 164 16 2 1432 1594 696850877 696850716 8.770000e-46 195.0
67 TraesCS3B01G015800 chr2A 100.000 29 0 0 1620 1648 124382072 124382044 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G015800 chr3B 6532011 6535111 3100 False 5727.000000 5727 100.000000 1 3101 1 chr3B.!!$F1 3100
1 TraesCS3B01G015800 chr3B 6336278 6338568 2290 False 347.166667 715 87.692833 297 2864 6 chr3B.!!$F3 2567
2 TraesCS3B01G015800 chr3B 6467761 6470276 2515 False 345.250000 448 83.143750 186 2265 4 chr3B.!!$F6 2079
3 TraesCS3B01G015800 chr3B 6405353 6407318 1965 False 339.400000 632 88.741200 278 2439 5 chr3B.!!$F4 2161
4 TraesCS3B01G015800 chr3B 6413043 6415493 2450 False 252.500000 390 92.802000 2474 2864 2 chr3B.!!$F5 390
5 TraesCS3B01G015800 chr3A 9627153 9632193 5040 False 687.666667 1194 85.834000 165 2877 3 chr3A.!!$F1 2712
6 TraesCS3B01G015800 chr3D 4133863 4139903 6040 False 587.700000 1035 87.961571 469 3016 7 chr3D.!!$F3 2547
7 TraesCS3B01G015800 chr3D 4153163 4157349 4186 False 399.500000 632 88.487500 2125 2877 2 chr3D.!!$F4 752
8 TraesCS3B01G015800 chr3D 4111001 4112965 1964 False 351.750000 516 88.686750 82 2229 4 chr3D.!!$F2 2147
9 TraesCS3B01G015800 chrUn 35826972 35829487 2515 False 345.250000 448 83.143750 186 2265 4 chrUn.!!$F1 2079
10 TraesCS3B01G015800 chr5A 699318700 699320336 1636 False 209.000000 294 90.555500 1660 2116 2 chr5A.!!$F2 456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.179026 AGCTCGTCAGGCGGTATCTA 60.179 55.0 0.00 0.0 41.72 1.98 F
47 48 0.238817 GCTCGTCAGGCGGTATCTAG 59.761 60.0 0.00 0.0 41.72 2.43 F
1895 5916 0.656785 GAGGTGGTAGCGTACGAGAG 59.343 60.0 21.65 0.0 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 4564 0.249073 ACATGTAGCACTCGATCGGC 60.249 55.000 16.41 11.07 0.0 5.54 R
1917 5938 2.184167 CACGAAGGCCAAACGGTGT 61.184 57.895 5.01 0.00 0.0 4.16 R
3056 13294 0.179100 AGGTTGAGACGATGCATCCG 60.179 55.000 20.87 17.15 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.927555 TTGGTCTTTAGGGCGACAG 57.072 52.632 0.00 0.00 31.88 3.51
19 20 0.321298 TTGGTCTTTAGGGCGACAGC 60.321 55.000 0.00 0.00 44.18 4.40
20 21 1.810030 GGTCTTTAGGGCGACAGCG 60.810 63.158 0.00 0.00 46.35 5.18
21 22 1.810030 GTCTTTAGGGCGACAGCGG 60.810 63.158 0.00 0.00 46.35 5.52
22 23 2.511600 CTTTAGGGCGACAGCGGG 60.512 66.667 0.00 0.00 46.35 6.13
23 24 3.310860 CTTTAGGGCGACAGCGGGT 62.311 63.158 0.00 0.00 46.35 5.28
24 25 3.599285 TTTAGGGCGACAGCGGGTG 62.599 63.158 5.50 5.50 46.35 4.61
37 38 4.767255 GGGTGCCAGCTCGTCAGG 62.767 72.222 0.00 0.00 0.00 3.86
42 43 3.449227 CCAGCTCGTCAGGCGGTA 61.449 66.667 0.00 0.00 41.72 4.02
43 44 2.786495 CCAGCTCGTCAGGCGGTAT 61.786 63.158 0.00 0.00 41.72 2.73
44 45 1.299468 CAGCTCGTCAGGCGGTATC 60.299 63.158 0.00 0.00 41.72 2.24
45 46 1.454111 AGCTCGTCAGGCGGTATCT 60.454 57.895 0.00 0.00 41.72 1.98
46 47 0.179026 AGCTCGTCAGGCGGTATCTA 60.179 55.000 0.00 0.00 41.72 1.98
47 48 0.238817 GCTCGTCAGGCGGTATCTAG 59.761 60.000 0.00 0.00 41.72 2.43
48 49 1.880271 CTCGTCAGGCGGTATCTAGA 58.120 55.000 0.00 0.00 41.72 2.43
49 50 1.532007 CTCGTCAGGCGGTATCTAGAC 59.468 57.143 0.00 0.00 41.72 2.59
50 51 1.140452 TCGTCAGGCGGTATCTAGACT 59.860 52.381 0.00 0.00 41.72 3.24
51 52 1.948145 CGTCAGGCGGTATCTAGACTT 59.052 52.381 0.00 0.00 36.85 3.01
52 53 3.136763 CGTCAGGCGGTATCTAGACTTA 58.863 50.000 0.00 0.00 36.85 2.24
53 54 3.059051 CGTCAGGCGGTATCTAGACTTAC 60.059 52.174 0.00 0.00 36.85 2.34
54 55 3.059051 GTCAGGCGGTATCTAGACTTACG 60.059 52.174 0.00 0.00 0.00 3.18
55 56 2.877168 CAGGCGGTATCTAGACTTACGT 59.123 50.000 0.00 0.00 0.00 3.57
56 57 3.314635 CAGGCGGTATCTAGACTTACGTT 59.685 47.826 0.00 0.00 0.00 3.99
57 58 3.563390 AGGCGGTATCTAGACTTACGTTC 59.437 47.826 0.00 0.00 0.00 3.95
58 59 3.313526 GGCGGTATCTAGACTTACGTTCA 59.686 47.826 0.00 0.00 0.00 3.18
59 60 4.023365 GGCGGTATCTAGACTTACGTTCAT 60.023 45.833 0.00 0.00 0.00 2.57
60 61 4.910456 GCGGTATCTAGACTTACGTTCATG 59.090 45.833 0.00 0.00 0.00 3.07
61 62 5.277683 GCGGTATCTAGACTTACGTTCATGA 60.278 44.000 0.00 0.00 0.00 3.07
62 63 6.364261 CGGTATCTAGACTTACGTTCATGAG 58.636 44.000 0.00 0.00 0.00 2.90
63 64 6.202379 CGGTATCTAGACTTACGTTCATGAGA 59.798 42.308 0.00 0.00 0.00 3.27
64 65 7.095144 CGGTATCTAGACTTACGTTCATGAGAT 60.095 40.741 0.00 0.00 0.00 2.75
65 66 8.231837 GGTATCTAGACTTACGTTCATGAGATC 58.768 40.741 0.00 0.00 0.00 2.75
66 67 6.621316 TCTAGACTTACGTTCATGAGATCC 57.379 41.667 0.00 0.00 0.00 3.36
67 68 6.120220 TCTAGACTTACGTTCATGAGATCCA 58.880 40.000 0.00 0.00 0.00 3.41
68 69 5.661056 AGACTTACGTTCATGAGATCCAA 57.339 39.130 0.00 0.00 0.00 3.53
69 70 6.227298 AGACTTACGTTCATGAGATCCAAT 57.773 37.500 0.00 0.00 0.00 3.16
70 71 6.276847 AGACTTACGTTCATGAGATCCAATC 58.723 40.000 0.00 0.00 0.00 2.67
71 72 6.097554 AGACTTACGTTCATGAGATCCAATCT 59.902 38.462 0.00 0.00 43.70 2.40
72 73 6.644347 ACTTACGTTCATGAGATCCAATCTT 58.356 36.000 0.00 0.00 40.38 2.40
73 74 7.106239 ACTTACGTTCATGAGATCCAATCTTT 58.894 34.615 0.00 0.00 40.38 2.52
74 75 7.607991 ACTTACGTTCATGAGATCCAATCTTTT 59.392 33.333 0.00 0.00 40.38 2.27
75 76 6.428385 ACGTTCATGAGATCCAATCTTTTC 57.572 37.500 0.00 0.00 40.38 2.29
76 77 5.355350 ACGTTCATGAGATCCAATCTTTTCC 59.645 40.000 0.00 0.00 40.38 3.13
77 78 5.587844 CGTTCATGAGATCCAATCTTTTCCT 59.412 40.000 0.00 0.00 40.38 3.36
78 79 6.094603 CGTTCATGAGATCCAATCTTTTCCTT 59.905 38.462 0.00 0.00 40.38 3.36
79 80 7.256286 GTTCATGAGATCCAATCTTTTCCTTG 58.744 38.462 0.00 0.00 40.38 3.61
80 81 5.359009 TCATGAGATCCAATCTTTTCCTTGC 59.641 40.000 0.00 0.00 40.38 4.01
84 85 1.148867 TCCAATCTTTTCCTTGCCCCA 59.851 47.619 0.00 0.00 0.00 4.96
89 90 3.100207 TCTTTTCCTTGCCCCATTAGG 57.900 47.619 0.00 0.00 0.00 2.69
125 131 9.997482 GAAAGATAAACACACTTAAACTTGTGA 57.003 29.630 15.11 0.00 45.03 3.58
133 139 6.205853 ACACACTTAAACTTGTGAGAACAACA 59.794 34.615 15.11 0.00 45.03 3.33
138 144 8.686334 ACTTAAACTTGTGAGAACAACATTGAT 58.314 29.630 0.00 0.00 0.00 2.57
143 149 6.998074 ACTTGTGAGAACAACATTGATTAGGA 59.002 34.615 0.00 0.00 0.00 2.94
144 150 7.502226 ACTTGTGAGAACAACATTGATTAGGAA 59.498 33.333 0.00 0.00 0.00 3.36
145 151 7.202016 TGTGAGAACAACATTGATTAGGAAC 57.798 36.000 0.00 0.00 0.00 3.62
147 153 7.448161 TGTGAGAACAACATTGATTAGGAACAT 59.552 33.333 0.00 0.00 0.00 2.71
148 154 8.946085 GTGAGAACAACATTGATTAGGAACATA 58.054 33.333 0.00 0.00 0.00 2.29
149 155 8.946085 TGAGAACAACATTGATTAGGAACATAC 58.054 33.333 0.00 0.00 0.00 2.39
150 156 9.167311 GAGAACAACATTGATTAGGAACATACT 57.833 33.333 0.00 0.00 0.00 2.12
152 158 9.774742 GAACAACATTGATTAGGAACATACTTC 57.225 33.333 0.00 0.00 0.00 3.01
153 159 9.520515 AACAACATTGATTAGGAACATACTTCT 57.479 29.630 0.00 0.00 0.00 2.85
154 160 8.950210 ACAACATTGATTAGGAACATACTTCTG 58.050 33.333 0.00 0.00 0.00 3.02
155 161 7.559590 ACATTGATTAGGAACATACTTCTGC 57.440 36.000 0.00 0.00 0.00 4.26
157 163 7.831193 ACATTGATTAGGAACATACTTCTGCTT 59.169 33.333 0.00 0.00 0.00 3.91
158 164 7.615582 TTGATTAGGAACATACTTCTGCTTG 57.384 36.000 0.00 0.00 0.00 4.01
159 165 5.586243 TGATTAGGAACATACTTCTGCTTGC 59.414 40.000 0.00 0.00 0.00 4.01
161 167 1.745653 GGAACATACTTCTGCTTGCCC 59.254 52.381 0.00 0.00 0.00 5.36
162 168 1.745653 GAACATACTTCTGCTTGCCCC 59.254 52.381 0.00 0.00 0.00 5.80
163 169 0.698238 ACATACTTCTGCTTGCCCCA 59.302 50.000 0.00 0.00 0.00 4.96
184 190 6.431234 CCCCATAAGACATAAGCTTACCAATC 59.569 42.308 8.70 4.34 31.27 2.67
226 232 4.947388 TCAAAGCAGTCTTGTGTACCTTTT 59.053 37.500 0.00 0.00 31.78 2.27
232 238 5.562890 GCAGTCTTGTGTACCTTTTCATTCC 60.563 44.000 0.00 0.00 0.00 3.01
293 301 7.811482 AGATATCTAAATTGGAGAGCCAGAT 57.189 36.000 2.53 0.00 46.91 2.90
305 313 3.760684 GAGAGCCAGATTCACAACCAAAT 59.239 43.478 0.00 0.00 0.00 2.32
342 350 6.737720 AATTCTCTTCTTCTTTGCCCTTTT 57.262 33.333 0.00 0.00 0.00 2.27
344 352 4.792068 TCTCTTCTTCTTTGCCCTTTTCA 58.208 39.130 0.00 0.00 0.00 2.69
348 356 4.058721 TCTTCTTTGCCCTTTTCAAAGC 57.941 40.909 9.80 0.00 45.96 3.51
354 362 2.387757 TGCCCTTTTCAAAGCAGAAGT 58.612 42.857 0.00 0.00 34.69 3.01
358 366 4.363138 CCCTTTTCAAAGCAGAAGTGTTC 58.637 43.478 0.00 0.00 34.69 3.18
389 397 1.249407 AGTCTCGAGACCAGACAACC 58.751 55.000 35.83 13.15 45.85 3.77
391 399 1.213013 CTCGAGACCAGACAACCGG 59.787 63.158 6.58 0.00 0.00 5.28
406 414 3.878699 ACAACCGGTCGAATAAACAAAGT 59.121 39.130 8.04 0.00 0.00 2.66
407 415 4.215965 CAACCGGTCGAATAAACAAAGTG 58.784 43.478 8.04 0.00 0.00 3.16
408 416 3.469739 ACCGGTCGAATAAACAAAGTGT 58.530 40.909 0.00 0.00 0.00 3.55
440 448 3.357166 TTATTTTTGCACGGTCCACAC 57.643 42.857 0.00 0.00 0.00 3.82
451 459 1.568612 GGTCCACACATGTGCTGTCG 61.569 60.000 25.68 9.01 44.34 4.35
460 468 2.125912 GTGCTGTCGACGCCTGAT 60.126 61.111 23.01 0.00 0.00 2.90
494 503 2.888414 CGTGGGGGTAACATTTTTGAGT 59.112 45.455 0.00 0.00 39.74 3.41
527 536 0.976641 AATCTCCAGCACGTGAAGGA 59.023 50.000 22.23 22.59 0.00 3.36
624 638 7.645058 ACAGAAAGTTTGATTCCAGAAAAGA 57.355 32.000 0.00 0.00 0.00 2.52
646 660 1.736032 GCGAGGAAGCGTACACTGATT 60.736 52.381 0.00 0.00 0.00 2.57
647 661 2.479049 GCGAGGAAGCGTACACTGATTA 60.479 50.000 0.00 0.00 0.00 1.75
648 662 3.795826 GCGAGGAAGCGTACACTGATTAT 60.796 47.826 0.00 0.00 0.00 1.28
649 663 4.360563 CGAGGAAGCGTACACTGATTATT 58.639 43.478 0.00 0.00 0.00 1.40
650 664 4.804139 CGAGGAAGCGTACACTGATTATTT 59.196 41.667 0.00 0.00 0.00 1.40
651 665 5.291128 CGAGGAAGCGTACACTGATTATTTT 59.709 40.000 0.00 0.00 0.00 1.82
652 666 6.183360 CGAGGAAGCGTACACTGATTATTTTT 60.183 38.462 0.00 0.00 0.00 1.94
653 667 6.842163 AGGAAGCGTACACTGATTATTTTTG 58.158 36.000 0.00 0.00 0.00 2.44
654 668 6.027749 GGAAGCGTACACTGATTATTTTTGG 58.972 40.000 0.00 0.00 0.00 3.28
655 669 6.128117 GGAAGCGTACACTGATTATTTTTGGA 60.128 38.462 0.00 0.00 0.00 3.53
656 670 6.811253 AGCGTACACTGATTATTTTTGGAA 57.189 33.333 0.00 0.00 0.00 3.53
657 671 6.842163 AGCGTACACTGATTATTTTTGGAAG 58.158 36.000 0.00 0.00 0.00 3.46
658 672 5.511729 GCGTACACTGATTATTTTTGGAAGC 59.488 40.000 0.00 0.00 0.00 3.86
659 673 5.732647 CGTACACTGATTATTTTTGGAAGCG 59.267 40.000 0.00 0.00 0.00 4.68
660 674 5.705609 ACACTGATTATTTTTGGAAGCGT 57.294 34.783 0.00 0.00 0.00 5.07
661 675 6.811253 ACACTGATTATTTTTGGAAGCGTA 57.189 33.333 0.00 0.00 0.00 4.42
662 676 6.608610 ACACTGATTATTTTTGGAAGCGTAC 58.391 36.000 0.00 0.00 0.00 3.67
663 677 6.205853 ACACTGATTATTTTTGGAAGCGTACA 59.794 34.615 0.00 0.00 0.00 2.90
664 678 6.523201 CACTGATTATTTTTGGAAGCGTACAC 59.477 38.462 0.00 0.00 0.00 2.90
665 679 6.430000 ACTGATTATTTTTGGAAGCGTACACT 59.570 34.615 0.00 0.00 0.00 3.55
666 680 6.607689 TGATTATTTTTGGAAGCGTACACTG 58.392 36.000 0.00 0.00 0.00 3.66
667 681 6.428465 TGATTATTTTTGGAAGCGTACACTGA 59.572 34.615 0.00 0.00 0.00 3.41
668 682 6.811253 TTATTTTTGGAAGCGTACACTGAT 57.189 33.333 0.00 0.00 0.00 2.90
673 687 2.167487 TGGAAGCGTACACTGATGCATA 59.833 45.455 0.00 0.00 33.52 3.14
681 695 5.234329 GCGTACACTGATGCATACTTGTAAT 59.766 40.000 12.85 1.09 0.00 1.89
682 696 6.419710 GCGTACACTGATGCATACTTGTAATA 59.580 38.462 12.85 0.00 0.00 0.98
853 886 7.545965 CACCAGAAGTAAGTCGTATCTTTTGAT 59.454 37.037 0.00 0.00 42.66 2.57
854 887 7.545965 ACCAGAAGTAAGTCGTATCTTTTGATG 59.454 37.037 0.00 0.00 39.88 3.07
855 888 7.545965 CCAGAAGTAAGTCGTATCTTTTGATGT 59.454 37.037 0.00 0.00 39.88 3.06
858 903 4.842139 AAGTCGTATCTTTTGATGTCGC 57.158 40.909 0.00 0.00 39.88 5.19
861 906 2.159352 TCGTATCTTTTGATGTCGCGGA 60.159 45.455 6.13 0.00 39.88 5.54
904 949 5.246981 AGCATATAAATAGCAGCAGGGAA 57.753 39.130 0.00 0.00 0.00 3.97
1021 1107 1.740285 CCGAATTCGAGGGATCCGT 59.260 57.895 28.76 6.67 43.02 4.69
1048 1134 2.034999 GGGGGATTGTTGGCGACA 59.965 61.111 2.68 2.68 39.83 4.35
1095 1181 2.646175 GCTGAGGGTGCTGTACGGA 61.646 63.158 5.68 0.00 0.00 4.69
1283 1388 4.018324 AGGAGTGGTCTACTGATACAGACA 60.018 45.833 5.76 0.00 42.45 3.41
1355 1586 1.262640 ACCCTTGCGAACGGGAGTAT 61.263 55.000 13.07 0.00 46.69 2.12
1377 1608 4.945246 TCTCCATTGGTACGAGCTAAATC 58.055 43.478 1.86 0.00 0.00 2.17
1400 1632 2.170817 AGCTAGCTTTACCTTAGCCACC 59.829 50.000 12.68 0.00 39.47 4.61
1437 1682 7.177744 GTGAATTAACCTTCTCAAAATACCCCA 59.822 37.037 0.00 0.00 0.00 4.96
1440 1685 4.251103 ACCTTCTCAAAATACCCCATCC 57.749 45.455 0.00 0.00 0.00 3.51
1458 2732 7.072076 ACCCCATCCGTTTCTAAATATAAGTCT 59.928 37.037 0.00 0.00 0.00 3.24
1508 3148 9.326489 ACATATGGATGTATGTAGGTGTATTCT 57.674 33.333 7.80 0.00 44.77 2.40
1512 3152 8.637196 TGGATGTATGTAGGTGTATTCTAGAG 57.363 38.462 0.00 0.00 0.00 2.43
1514 3154 8.516234 GGATGTATGTAGGTGTATTCTAGAGTG 58.484 40.741 0.00 0.00 0.00 3.51
1515 3155 8.998277 ATGTATGTAGGTGTATTCTAGAGTGT 57.002 34.615 0.00 0.00 0.00 3.55
1517 3157 9.557061 TGTATGTAGGTGTATTCTAGAGTGTAG 57.443 37.037 0.00 0.00 0.00 2.74
1518 3158 9.775854 GTATGTAGGTGTATTCTAGAGTGTAGA 57.224 37.037 0.00 0.00 0.00 2.59
1520 3160 9.869667 ATGTAGGTGTATTCTAGAGTGTAGATT 57.130 33.333 0.00 0.00 0.00 2.40
1521 3161 9.339850 TGTAGGTGTATTCTAGAGTGTAGATTC 57.660 37.037 0.00 0.00 0.00 2.52
1522 3162 9.339850 GTAGGTGTATTCTAGAGTGTAGATTCA 57.660 37.037 0.00 0.00 0.00 2.57
1524 3164 9.427821 AGGTGTATTCTAGAGTGTAGATTCATT 57.572 33.333 0.00 0.00 0.00 2.57
1525 3165 9.685828 GGTGTATTCTAGAGTGTAGATTCATTC 57.314 37.037 0.00 0.00 0.00 2.67
1533 3289 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
1534 3290 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
1535 3291 7.828223 AGAGTGTAGATTCATTCATTTTGCTCT 59.172 33.333 0.00 0.00 0.00 4.09
1536 3292 7.759465 AGTGTAGATTCATTCATTTTGCTCTG 58.241 34.615 0.00 0.00 0.00 3.35
1537 3293 7.392673 AGTGTAGATTCATTCATTTTGCTCTGT 59.607 33.333 0.00 0.00 0.00 3.41
1541 3297 8.289939 AGATTCATTCATTTTGCTCTGTATGT 57.710 30.769 0.00 0.00 0.00 2.29
1543 3299 9.661187 GATTCATTCATTTTGCTCTGTATGTAG 57.339 33.333 0.00 0.00 0.00 2.74
1544 3300 7.019774 TCATTCATTTTGCTCTGTATGTAGC 57.980 36.000 0.00 0.00 39.25 3.58
1552 3308 7.719778 TTTGCTCTGTATGTAGCTCATATTG 57.280 36.000 0.00 0.00 40.54 1.90
1553 3309 5.787380 TGCTCTGTATGTAGCTCATATTGG 58.213 41.667 0.00 0.00 40.54 3.16
1554 3310 5.539955 TGCTCTGTATGTAGCTCATATTGGA 59.460 40.000 0.00 0.00 40.54 3.53
1555 3311 6.041979 TGCTCTGTATGTAGCTCATATTGGAA 59.958 38.462 0.00 0.00 40.54 3.53
1557 3313 7.277539 GCTCTGTATGTAGCTCATATTGGAATC 59.722 40.741 0.00 0.00 40.54 2.52
1559 3315 8.526978 TCTGTATGTAGCTCATATTGGAATCTC 58.473 37.037 0.00 0.00 40.54 2.75
1561 3317 8.309656 TGTATGTAGCTCATATTGGAATCTCTG 58.690 37.037 0.00 0.00 40.54 3.35
1565 3321 8.267183 TGTAGCTCATATTGGAATCTCTGAAAA 58.733 33.333 0.00 0.00 0.00 2.29
1567 3323 7.571919 AGCTCATATTGGAATCTCTGAAAAGA 58.428 34.615 0.00 0.00 0.00 2.52
1592 3423 8.773033 ACTTATATTTAAGAACGGAGGGAGTA 57.227 34.615 9.58 0.00 38.56 2.59
1606 3437 5.594725 CGGAGGGAGTAGCATGTATATATGT 59.405 44.000 10.72 1.74 0.00 2.29
1609 3440 7.418025 GGAGGGAGTAGCATGTATATATGTTCC 60.418 44.444 10.72 11.48 0.00 3.62
1647 3526 6.497785 TCTTGTCGTGGTTTTAGTTCAAAA 57.502 33.333 0.00 0.00 33.66 2.44
1656 4207 7.427318 CGTGGTTTTAGTTCAAAAGTAACTCAC 59.573 37.037 0.00 0.00 36.79 3.51
1718 4269 2.005370 TACCAGAAGGAGGTGACGTT 57.995 50.000 0.00 0.00 40.26 3.99
1741 4564 5.715070 TGGCCGTGGTAAGAAATTAATTTG 58.285 37.500 17.98 1.97 0.00 2.32
1752 4576 5.810525 AGAAATTAATTTGCCGATCGAGTG 58.189 37.500 18.66 0.27 0.00 3.51
1773 4600 3.747529 TGCTACATGTGTCATGTCAACTG 59.252 43.478 16.86 0.00 33.76 3.16
1782 4609 5.717654 TGTGTCATGTCAACTGTATACCCTA 59.282 40.000 0.00 0.00 0.00 3.53
1794 4621 6.919158 ACTGTATACCCTATCCAACTGTCTA 58.081 40.000 0.00 0.00 0.00 2.59
1895 5916 0.656785 GAGGTGGTAGCGTACGAGAG 59.343 60.000 21.65 0.00 0.00 3.20
1941 5962 0.458260 GTTTGGCCTTCGTGGTGTTT 59.542 50.000 3.32 0.00 38.35 2.83
1949 5970 2.590575 CGTGGTGTTTCGGCAGGT 60.591 61.111 0.00 0.00 0.00 4.00
2025 6046 2.510238 GCCGAGTGCTACAGCCTG 60.510 66.667 0.00 0.00 41.18 4.85
2116 6137 2.289565 GGTGAACCAAGCTGGCTATAC 58.710 52.381 0.00 0.00 42.67 1.47
2147 6175 2.114670 CACACCATCACGCCATCCC 61.115 63.158 0.00 0.00 0.00 3.85
2184 6212 9.773328 TCGCACAAGATAAATGAATAAAGAAAG 57.227 29.630 0.00 0.00 0.00 2.62
2196 6224 6.007076 TGAATAAAGAAAGTATGTGTGGGCA 58.993 36.000 0.00 0.00 0.00 5.36
2225 6253 1.403249 CCTTGTGTGCTGGCTAATTGC 60.403 52.381 0.00 0.00 41.94 3.56
2270 6371 2.943033 GGCCGAATATACTGTGCACTTT 59.057 45.455 19.41 7.21 0.00 2.66
2318 7129 8.840200 AATCTTGTATGTACTCTTTCTAGGGA 57.160 34.615 0.00 0.00 0.00 4.20
2321 7132 8.529476 TCTTGTATGTACTCTTTCTAGGGAAAC 58.471 37.037 0.00 0.00 36.63 2.78
2331 7142 8.973182 ACTCTTTCTAGGGAAACAATCTACTAG 58.027 37.037 0.00 0.00 36.63 2.57
2345 10517 7.306781 ACAATCTACTAGTTTCTATAGCCCCT 58.693 38.462 0.00 0.00 0.00 4.79
2389 10561 0.751643 GGCCTATCCACCGCAACATT 60.752 55.000 0.00 0.00 34.01 2.71
2392 10564 1.408127 CCTATCCACCGCAACATTGGA 60.408 52.381 0.00 0.00 43.60 3.53
2400 10573 2.566724 ACCGCAACATTGGATTCCATTT 59.433 40.909 6.15 0.00 31.53 2.32
2401 10574 3.189285 CCGCAACATTGGATTCCATTTC 58.811 45.455 6.15 0.00 31.53 2.17
2407 10580 6.567050 CAACATTGGATTCCATTTCTCGAAT 58.433 36.000 6.15 0.00 31.53 3.34
2428 10602 4.134785 TGGTGGGGTGCAGCAACA 62.135 61.111 19.06 13.15 0.00 3.33
2453 10627 4.100808 TGAACAAAAGGTGCATAGGCTTTT 59.899 37.500 0.00 0.00 41.91 2.27
2479 10653 4.265073 GGAGAAGATGTGTATGGCAAACT 58.735 43.478 0.00 0.00 0.00 2.66
2486 10660 3.760738 TGTGTATGGCAAACTGGAATGA 58.239 40.909 0.00 0.00 0.00 2.57
2494 10668 3.256631 GGCAAACTGGAATGAAGTGATGT 59.743 43.478 0.00 0.00 0.00 3.06
2495 10669 4.262164 GGCAAACTGGAATGAAGTGATGTT 60.262 41.667 0.00 0.00 0.00 2.71
2497 10671 5.858581 GCAAACTGGAATGAAGTGATGTTAC 59.141 40.000 0.00 0.00 0.00 2.50
2500 10674 6.365970 ACTGGAATGAAGTGATGTTACTCT 57.634 37.500 0.00 0.00 0.00 3.24
2520 10694 4.934356 TCTGAGACCCAAAGGCATTTAAT 58.066 39.130 0.00 0.00 36.11 1.40
2524 10698 5.541868 TGAGACCCAAAGGCATTTAATCAAA 59.458 36.000 0.00 0.00 36.11 2.69
2560 10734 0.737219 AGCTTGGCGAATCATTCAGC 59.263 50.000 0.00 2.16 0.00 4.26
2582 10756 2.089980 CCCATCCTCTCTTTGTGCAAG 58.910 52.381 0.00 0.00 0.00 4.01
2596 10770 1.683385 GTGCAAGGGTTCTGAAAGCTT 59.317 47.619 0.00 0.00 33.34 3.74
2653 10828 3.393687 TGCCTAGTGGTGGATCCTTTAT 58.606 45.455 14.23 0.00 37.07 1.40
2659 10834 5.269554 AGTGGTGGATCCTTTATTTTCCA 57.730 39.130 14.23 5.96 35.93 3.53
2705 10882 2.094649 CCTACTTCGAGAAGGTGTGGTC 60.095 54.545 16.16 0.00 42.53 4.02
2777 10954 1.302285 CAAGGAGTGGCAGCCTCAT 59.698 57.895 14.15 0.00 32.07 2.90
2778 10955 0.747283 CAAGGAGTGGCAGCCTCATC 60.747 60.000 14.15 7.75 32.07 2.92
2830 13068 4.467084 GCGGCCGAGGGATCACAA 62.467 66.667 33.48 0.00 0.00 3.33
2833 13071 1.526887 GGCCGAGGGATCACAATGA 59.473 57.895 0.00 0.00 0.00 2.57
2871 13109 2.270352 ACAATGTTCACACCGGATGT 57.730 45.000 9.46 6.09 44.81 3.06
2878 13116 3.321396 TGTTCACACCGGATGTTGTACTA 59.679 43.478 9.46 0.00 40.64 1.82
2888 13126 3.243134 GGATGTTGTACTAGACGAGCTCC 60.243 52.174 8.47 0.00 0.00 4.70
2898 13136 4.579753 ACTAGACGAGCTCCTTTATGGTAC 59.420 45.833 8.47 0.00 37.07 3.34
2925 13163 4.090354 GTGATGAATTTGCAACGTCCATTG 59.910 41.667 0.00 0.00 0.00 2.82
2971 13209 3.384467 ACATATATTGTTGTGCTTGGCCC 59.616 43.478 0.00 0.00 33.74 5.80
3020 13258 2.906354 CGGGCAGCAGTATAAGTTTCT 58.094 47.619 0.00 0.00 0.00 2.52
3021 13259 3.270877 CGGGCAGCAGTATAAGTTTCTT 58.729 45.455 0.00 0.00 0.00 2.52
3022 13260 3.063997 CGGGCAGCAGTATAAGTTTCTTG 59.936 47.826 0.00 0.00 0.00 3.02
3024 13262 4.333926 GGGCAGCAGTATAAGTTTCTTGAG 59.666 45.833 0.00 0.00 0.00 3.02
3025 13263 4.333926 GGCAGCAGTATAAGTTTCTTGAGG 59.666 45.833 0.00 0.00 0.00 3.86
3028 13266 5.352569 CAGCAGTATAAGTTTCTTGAGGGTG 59.647 44.000 0.00 0.00 0.00 4.61
3029 13267 5.013183 AGCAGTATAAGTTTCTTGAGGGTGT 59.987 40.000 0.00 0.00 0.00 4.16
3030 13268 5.705905 GCAGTATAAGTTTCTTGAGGGTGTT 59.294 40.000 0.00 0.00 0.00 3.32
3031 13269 6.206829 GCAGTATAAGTTTCTTGAGGGTGTTT 59.793 38.462 0.00 0.00 0.00 2.83
3032 13270 7.255486 GCAGTATAAGTTTCTTGAGGGTGTTTT 60.255 37.037 0.00 0.00 0.00 2.43
3034 13272 9.503399 AGTATAAGTTTCTTGAGGGTGTTTTAG 57.497 33.333 0.00 0.00 0.00 1.85
3035 13273 7.761038 ATAAGTTTCTTGAGGGTGTTTTAGG 57.239 36.000 0.00 0.00 0.00 2.69
3036 13274 4.470602 AGTTTCTTGAGGGTGTTTTAGGG 58.529 43.478 0.00 0.00 0.00 3.53
3038 13276 4.367039 TTCTTGAGGGTGTTTTAGGGAG 57.633 45.455 0.00 0.00 0.00 4.30
3039 13277 3.593942 TCTTGAGGGTGTTTTAGGGAGA 58.406 45.455 0.00 0.00 0.00 3.71
3040 13278 3.977999 TCTTGAGGGTGTTTTAGGGAGAA 59.022 43.478 0.00 0.00 0.00 2.87
3041 13279 4.041691 TCTTGAGGGTGTTTTAGGGAGAAG 59.958 45.833 0.00 0.00 0.00 2.85
3043 13281 2.910977 GAGGGTGTTTTAGGGAGAAGGA 59.089 50.000 0.00 0.00 0.00 3.36
3046 13284 4.357097 AGGGTGTTTTAGGGAGAAGGAAAT 59.643 41.667 0.00 0.00 0.00 2.17
3047 13285 5.084519 GGGTGTTTTAGGGAGAAGGAAATT 58.915 41.667 0.00 0.00 0.00 1.82
3048 13286 5.542635 GGGTGTTTTAGGGAGAAGGAAATTT 59.457 40.000 0.00 0.00 0.00 1.82
3049 13287 6.722590 GGGTGTTTTAGGGAGAAGGAAATTTA 59.277 38.462 0.00 0.00 0.00 1.40
3050 13288 7.093902 GGGTGTTTTAGGGAGAAGGAAATTTAG 60.094 40.741 0.00 0.00 0.00 1.85
3052 13290 6.436218 TGTTTTAGGGAGAAGGAAATTTAGCC 59.564 38.462 0.00 0.00 0.00 3.93
3054 13292 2.092375 AGGGAGAAGGAAATTTAGCCCG 60.092 50.000 0.00 0.00 39.31 6.13
3056 13294 2.943690 GGAGAAGGAAATTTAGCCCGTC 59.056 50.000 0.00 0.00 0.00 4.79
3057 13295 2.608090 GAGAAGGAAATTTAGCCCGTCG 59.392 50.000 0.00 0.00 34.40 5.12
3059 13297 0.906775 AGGAAATTTAGCCCGTCGGA 59.093 50.000 14.39 0.00 0.00 4.55
3060 13298 1.489230 AGGAAATTTAGCCCGTCGGAT 59.511 47.619 14.39 3.26 0.00 4.18
3062 13300 1.002792 GAAATTTAGCCCGTCGGATGC 60.003 52.381 14.39 8.80 0.00 3.91
3063 13301 0.107410 AATTTAGCCCGTCGGATGCA 60.107 50.000 14.39 0.00 0.00 3.96
3064 13302 0.108585 ATTTAGCCCGTCGGATGCAT 59.891 50.000 14.39 0.00 0.00 3.96
3065 13303 0.531974 TTTAGCCCGTCGGATGCATC 60.532 55.000 18.81 18.81 0.00 3.91
3066 13304 2.693250 TTAGCCCGTCGGATGCATCG 62.693 60.000 20.15 15.03 0.00 3.84
3067 13305 4.891727 GCCCGTCGGATGCATCGT 62.892 66.667 20.15 0.00 0.00 3.73
3068 13306 2.658593 CCCGTCGGATGCATCGTC 60.659 66.667 20.15 11.55 0.00 4.20
3069 13307 2.413351 CCGTCGGATGCATCGTCT 59.587 61.111 20.15 0.00 0.00 4.18
3072 13310 0.525455 CGTCGGATGCATCGTCTCAA 60.525 55.000 20.15 0.00 0.00 3.02
3073 13311 0.924090 GTCGGATGCATCGTCTCAAC 59.076 55.000 20.15 8.02 0.00 3.18
3078 13316 2.101582 GGATGCATCGTCTCAACCTACT 59.898 50.000 20.15 0.00 0.00 2.57
3079 13317 2.941453 TGCATCGTCTCAACCTACTC 57.059 50.000 0.00 0.00 0.00 2.59
3080 13318 2.167662 TGCATCGTCTCAACCTACTCA 58.832 47.619 0.00 0.00 0.00 3.41
3081 13319 2.560981 TGCATCGTCTCAACCTACTCAA 59.439 45.455 0.00 0.00 0.00 3.02
3082 13320 3.195610 TGCATCGTCTCAACCTACTCAAT 59.804 43.478 0.00 0.00 0.00 2.57
3084 13322 4.363999 CATCGTCTCAACCTACTCAATCC 58.636 47.826 0.00 0.00 0.00 3.01
3085 13323 2.422479 TCGTCTCAACCTACTCAATCCG 59.578 50.000 0.00 0.00 0.00 4.18
3086 13324 2.422479 CGTCTCAACCTACTCAATCCGA 59.578 50.000 0.00 0.00 0.00 4.55
3087 13325 3.066900 CGTCTCAACCTACTCAATCCGAT 59.933 47.826 0.00 0.00 0.00 4.18
3088 13326 4.440250 CGTCTCAACCTACTCAATCCGATT 60.440 45.833 0.00 0.00 0.00 3.34
3089 13327 5.044558 GTCTCAACCTACTCAATCCGATTC 58.955 45.833 0.00 0.00 0.00 2.52
3090 13328 4.041740 TCAACCTACTCAATCCGATTCG 57.958 45.455 0.00 0.00 0.00 3.34
3091 13329 3.446161 TCAACCTACTCAATCCGATTCGT 59.554 43.478 5.20 0.00 0.00 3.85
3092 13330 3.712091 ACCTACTCAATCCGATTCGTC 57.288 47.619 5.20 0.00 0.00 4.20
3093 13331 3.288964 ACCTACTCAATCCGATTCGTCT 58.711 45.455 5.20 0.00 0.00 4.18
3095 13333 4.202030 ACCTACTCAATCCGATTCGTCTTC 60.202 45.833 5.20 0.00 0.00 2.87
3097 13335 2.496070 ACTCAATCCGATTCGTCTTCCA 59.504 45.455 5.20 0.00 0.00 3.53
3098 13336 3.133003 ACTCAATCCGATTCGTCTTCCAT 59.867 43.478 5.20 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.321298 GCTGTCGCCCTAAAGACCAA 60.321 55.000 0.00 0.00 36.61 3.67
2 3 1.810030 CGCTGTCGCCCTAAAGACC 60.810 63.158 0.00 0.00 36.61 3.85
3 4 1.810030 CCGCTGTCGCCCTAAAGAC 60.810 63.158 0.00 0.00 37.85 3.01
5 6 2.511600 CCCGCTGTCGCCCTAAAG 60.512 66.667 0.00 0.00 0.00 1.85
6 7 3.315949 ACCCGCTGTCGCCCTAAA 61.316 61.111 0.00 0.00 0.00 1.85
7 8 4.077184 CACCCGCTGTCGCCCTAA 62.077 66.667 0.00 0.00 0.00 2.69
20 21 4.767255 CCTGACGAGCTGGCACCC 62.767 72.222 0.00 0.00 0.00 4.61
31 32 1.595466 AGTCTAGATACCGCCTGACG 58.405 55.000 0.00 0.00 43.15 4.35
32 33 3.059051 CGTAAGTCTAGATACCGCCTGAC 60.059 52.174 0.00 0.00 0.00 3.51
33 34 3.136763 CGTAAGTCTAGATACCGCCTGA 58.863 50.000 0.00 0.00 0.00 3.86
34 35 3.539431 CGTAAGTCTAGATACCGCCTG 57.461 52.381 0.00 0.00 0.00 4.85
45 46 7.285629 AGATTGGATCTCATGAACGTAAGTCTA 59.714 37.037 0.00 0.00 44.01 2.59
46 47 6.097554 AGATTGGATCTCATGAACGTAAGTCT 59.902 38.462 0.00 0.00 44.01 3.24
47 48 6.276847 AGATTGGATCTCATGAACGTAAGTC 58.723 40.000 0.00 0.00 44.01 3.01
48 49 6.227298 AGATTGGATCTCATGAACGTAAGT 57.773 37.500 0.00 0.00 46.42 2.24
49 50 7.545362 AAAGATTGGATCTCATGAACGTAAG 57.455 36.000 0.00 0.00 39.08 2.34
50 51 7.065803 GGAAAAGATTGGATCTCATGAACGTAA 59.934 37.037 0.00 0.00 39.08 3.18
51 52 6.538742 GGAAAAGATTGGATCTCATGAACGTA 59.461 38.462 0.00 0.00 39.08 3.57
52 53 5.355350 GGAAAAGATTGGATCTCATGAACGT 59.645 40.000 0.00 0.00 39.08 3.99
53 54 5.587844 AGGAAAAGATTGGATCTCATGAACG 59.412 40.000 0.00 0.00 39.08 3.95
54 55 7.256286 CAAGGAAAAGATTGGATCTCATGAAC 58.744 38.462 0.00 0.00 39.08 3.18
55 56 6.127535 GCAAGGAAAAGATTGGATCTCATGAA 60.128 38.462 0.00 0.00 39.08 2.57
56 57 5.359009 GCAAGGAAAAGATTGGATCTCATGA 59.641 40.000 0.00 0.00 39.08 3.07
57 58 5.451520 GGCAAGGAAAAGATTGGATCTCATG 60.452 44.000 0.00 0.00 39.08 3.07
58 59 4.648307 GGCAAGGAAAAGATTGGATCTCAT 59.352 41.667 0.00 0.00 39.08 2.90
59 60 4.019174 GGCAAGGAAAAGATTGGATCTCA 58.981 43.478 0.00 0.00 39.08 3.27
60 61 3.382865 GGGCAAGGAAAAGATTGGATCTC 59.617 47.826 0.00 0.00 39.08 2.75
61 62 3.369175 GGGCAAGGAAAAGATTGGATCT 58.631 45.455 0.00 0.00 42.61 2.75
62 63 2.432146 GGGGCAAGGAAAAGATTGGATC 59.568 50.000 0.00 0.00 0.00 3.36
63 64 2.225598 TGGGGCAAGGAAAAGATTGGAT 60.226 45.455 0.00 0.00 0.00 3.41
64 65 1.148867 TGGGGCAAGGAAAAGATTGGA 59.851 47.619 0.00 0.00 0.00 3.53
65 66 1.643310 TGGGGCAAGGAAAAGATTGG 58.357 50.000 0.00 0.00 0.00 3.16
66 67 3.986996 AATGGGGCAAGGAAAAGATTG 57.013 42.857 0.00 0.00 0.00 2.67
67 68 4.033009 CCTAATGGGGCAAGGAAAAGATT 58.967 43.478 0.00 0.00 31.64 2.40
68 69 3.012844 ACCTAATGGGGCAAGGAAAAGAT 59.987 43.478 0.00 0.00 40.03 2.40
69 70 2.381961 ACCTAATGGGGCAAGGAAAAGA 59.618 45.455 0.00 0.00 40.03 2.52
70 71 2.820178 ACCTAATGGGGCAAGGAAAAG 58.180 47.619 0.00 0.00 40.03 2.27
71 72 4.618378 ATACCTAATGGGGCAAGGAAAA 57.382 40.909 0.00 0.00 40.03 2.29
72 73 4.618378 AATACCTAATGGGGCAAGGAAA 57.382 40.909 0.00 0.00 40.03 3.13
73 74 4.017037 TGAAATACCTAATGGGGCAAGGAA 60.017 41.667 0.00 0.00 40.03 3.36
74 75 3.529734 TGAAATACCTAATGGGGCAAGGA 59.470 43.478 0.00 0.00 40.03 3.36
75 76 3.909732 TGAAATACCTAATGGGGCAAGG 58.090 45.455 0.00 0.00 40.03 3.61
76 77 5.656416 TCTTTGAAATACCTAATGGGGCAAG 59.344 40.000 0.00 0.00 40.03 4.01
77 78 5.584913 TCTTTGAAATACCTAATGGGGCAA 58.415 37.500 0.00 0.00 40.03 4.52
78 79 5.199982 TCTTTGAAATACCTAATGGGGCA 57.800 39.130 0.00 0.00 40.03 5.36
79 80 6.379988 TCTTTCTTTGAAATACCTAATGGGGC 59.620 38.462 0.00 0.00 40.03 5.80
80 81 7.954666 TCTTTCTTTGAAATACCTAATGGGG 57.045 36.000 0.00 0.00 40.03 4.96
108 109 6.205853 TGTTGTTCTCACAAGTTTAAGTGTGT 59.794 34.615 12.85 0.22 43.83 3.72
109 110 6.607689 TGTTGTTCTCACAAGTTTAAGTGTG 58.392 36.000 8.83 8.83 43.83 3.82
110 111 6.811253 TGTTGTTCTCACAAGTTTAAGTGT 57.189 33.333 0.00 0.00 43.83 3.55
111 112 7.967854 TCAATGTTGTTCTCACAAGTTTAAGTG 59.032 33.333 0.00 0.00 43.83 3.16
113 114 9.520204 AATCAATGTTGTTCTCACAAGTTTAAG 57.480 29.630 0.00 0.00 43.83 1.85
123 129 8.946085 GTATGTTCCTAATCAATGTTGTTCTCA 58.054 33.333 0.00 0.00 0.00 3.27
125 131 9.520515 AAGTATGTTCCTAATCAATGTTGTTCT 57.479 29.630 0.00 0.00 0.00 3.01
126 132 9.774742 GAAGTATGTTCCTAATCAATGTTGTTC 57.225 33.333 0.00 0.00 0.00 3.18
133 139 7.201767 GCAAGCAGAAGTATGTTCCTAATCAAT 60.202 37.037 0.00 0.00 0.00 2.57
138 144 4.261801 GGCAAGCAGAAGTATGTTCCTAA 58.738 43.478 0.00 0.00 0.00 2.69
143 149 1.075374 TGGGGCAAGCAGAAGTATGTT 59.925 47.619 0.00 0.00 0.00 2.71
144 150 0.698238 TGGGGCAAGCAGAAGTATGT 59.302 50.000 0.00 0.00 0.00 2.29
145 151 2.062971 ATGGGGCAAGCAGAAGTATG 57.937 50.000 0.00 0.00 0.00 2.39
147 153 2.843730 TCTTATGGGGCAAGCAGAAGTA 59.156 45.455 0.00 0.00 0.00 2.24
148 154 1.635487 TCTTATGGGGCAAGCAGAAGT 59.365 47.619 0.00 0.00 0.00 3.01
149 155 2.019984 GTCTTATGGGGCAAGCAGAAG 58.980 52.381 0.00 0.00 0.00 2.85
150 156 1.354031 TGTCTTATGGGGCAAGCAGAA 59.646 47.619 0.00 0.00 0.00 3.02
152 158 2.062971 ATGTCTTATGGGGCAAGCAG 57.937 50.000 0.00 0.00 0.00 4.24
153 159 3.554934 CTTATGTCTTATGGGGCAAGCA 58.445 45.455 0.00 0.00 0.00 3.91
154 160 2.294512 GCTTATGTCTTATGGGGCAAGC 59.705 50.000 0.00 0.00 0.00 4.01
155 161 3.825328 AGCTTATGTCTTATGGGGCAAG 58.175 45.455 0.00 0.00 0.00 4.01
157 163 3.951563 AAGCTTATGTCTTATGGGGCA 57.048 42.857 0.00 0.00 0.00 5.36
158 164 4.072839 GGTAAGCTTATGTCTTATGGGGC 58.927 47.826 9.88 0.00 0.00 5.80
159 165 5.304686 TGGTAAGCTTATGTCTTATGGGG 57.695 43.478 9.88 0.00 0.00 4.96
161 167 6.998074 TGGATTGGTAAGCTTATGTCTTATGG 59.002 38.462 9.88 0.00 0.00 2.74
162 168 8.345565 GTTGGATTGGTAAGCTTATGTCTTATG 58.654 37.037 9.88 0.00 0.00 1.90
163 169 8.052748 TGTTGGATTGGTAAGCTTATGTCTTAT 58.947 33.333 9.88 0.00 0.00 1.73
184 190 4.108699 TGAGCAAAAGTTGAGTTGTTGG 57.891 40.909 0.00 0.00 0.00 3.77
210 216 5.941788 AGGAATGAAAAGGTACACAAGACT 58.058 37.500 0.00 0.00 0.00 3.24
246 252 5.495926 TGGTATCCCAATGCATTTTTGTT 57.504 34.783 9.83 0.00 37.98 2.83
267 273 7.448420 TCTGGCTCTCCAATTTAGATATCTTG 58.552 38.462 11.25 2.77 42.91 3.02
271 277 7.882271 GTGAATCTGGCTCTCCAATTTAGATAT 59.118 37.037 0.00 0.00 42.91 1.63
319 327 6.324770 TGAAAAGGGCAAAGAAGAAGAGAATT 59.675 34.615 0.00 0.00 0.00 2.17
342 350 1.867233 GAGCGAACACTTCTGCTTTGA 59.133 47.619 0.00 0.00 38.79 2.69
344 352 2.246719 AGAGCGAACACTTCTGCTTT 57.753 45.000 0.00 0.00 38.79 3.51
348 356 1.528586 CCACAAGAGCGAACACTTCTG 59.471 52.381 0.00 0.00 0.00 3.02
354 362 1.412710 AGACTTCCACAAGAGCGAACA 59.587 47.619 0.00 0.00 33.34 3.18
358 366 0.241213 TCGAGACTTCCACAAGAGCG 59.759 55.000 0.00 0.00 33.34 5.03
389 397 6.219302 ACTTACACTTTGTTTATTCGACCG 57.781 37.500 0.00 0.00 0.00 4.79
391 399 9.659830 ATGAAACTTACACTTTGTTTATTCGAC 57.340 29.630 0.00 0.00 34.55 4.20
408 416 9.915629 ACCGTGCAAAAATAATAATGAAACTTA 57.084 25.926 0.00 0.00 0.00 2.24
418 426 4.519350 TGTGTGGACCGTGCAAAAATAATA 59.481 37.500 0.00 0.00 0.00 0.98
419 427 3.319405 TGTGTGGACCGTGCAAAAATAAT 59.681 39.130 0.00 0.00 0.00 1.28
420 428 2.688446 TGTGTGGACCGTGCAAAAATAA 59.312 40.909 0.00 0.00 0.00 1.40
421 429 2.298610 TGTGTGGACCGTGCAAAAATA 58.701 42.857 0.00 0.00 0.00 1.40
422 430 1.107114 TGTGTGGACCGTGCAAAAAT 58.893 45.000 0.00 0.00 0.00 1.82
431 439 1.568612 GACAGCACATGTGTGGACCG 61.569 60.000 26.01 11.20 44.17 4.79
440 448 2.433145 AGGCGTCGACAGCACATG 60.433 61.111 25.67 7.24 36.08 3.21
451 459 1.876156 GATCCATCCAAATCAGGCGTC 59.124 52.381 0.00 0.00 0.00 5.19
460 468 0.034574 CCCCACGTGATCCATCCAAA 60.035 55.000 19.30 0.00 0.00 3.28
494 503 3.760151 CTGGAGATTGCAACAGATTTCCA 59.240 43.478 0.00 5.55 35.04 3.53
527 536 4.965532 AGTAGTAGTGGGCAGAATCTGAAT 59.034 41.667 15.38 0.00 32.44 2.57
624 638 1.977544 AGTGTACGCTTCCTCGCCT 60.978 57.895 2.24 0.00 0.00 5.52
646 660 5.391523 GCATCAGTGTACGCTTCCAAAAATA 60.392 40.000 6.11 0.00 0.00 1.40
647 661 4.615912 GCATCAGTGTACGCTTCCAAAAAT 60.616 41.667 6.11 0.00 0.00 1.82
648 662 3.304391 GCATCAGTGTACGCTTCCAAAAA 60.304 43.478 6.11 0.00 0.00 1.94
649 663 2.225491 GCATCAGTGTACGCTTCCAAAA 59.775 45.455 6.11 0.00 0.00 2.44
650 664 1.804151 GCATCAGTGTACGCTTCCAAA 59.196 47.619 6.11 0.00 0.00 3.28
651 665 1.270571 TGCATCAGTGTACGCTTCCAA 60.271 47.619 6.11 0.00 0.00 3.53
652 666 0.320050 TGCATCAGTGTACGCTTCCA 59.680 50.000 6.11 0.00 0.00 3.53
653 667 1.656652 ATGCATCAGTGTACGCTTCC 58.343 50.000 6.11 0.00 0.00 3.46
654 668 3.448686 AGTATGCATCAGTGTACGCTTC 58.551 45.455 6.11 0.00 0.00 3.86
655 669 3.526931 AGTATGCATCAGTGTACGCTT 57.473 42.857 6.11 0.00 0.00 4.68
656 670 3.190079 CAAGTATGCATCAGTGTACGCT 58.810 45.455 0.19 2.24 0.00 5.07
657 671 2.930040 ACAAGTATGCATCAGTGTACGC 59.070 45.455 0.19 0.00 0.00 4.42
658 672 6.828502 ATTACAAGTATGCATCAGTGTACG 57.171 37.500 0.19 0.00 0.00 3.67
661 675 8.962884 TCAATATTACAAGTATGCATCAGTGT 57.037 30.769 0.19 8.36 0.00 3.55
673 687 8.462016 GCCAGAGTTTGAATCAATATTACAAGT 58.538 33.333 0.00 0.00 0.00 3.16
681 695 3.278574 CCGGCCAGAGTTTGAATCAATA 58.721 45.455 2.24 0.00 0.00 1.90
682 696 2.094675 CCGGCCAGAGTTTGAATCAAT 58.905 47.619 2.24 0.00 0.00 2.57
712 727 0.608035 TTTCTGGTCGGATGGCCAAC 60.608 55.000 10.96 7.12 33.93 3.77
853 886 0.237235 GCACTGAAATTTCCGCGACA 59.763 50.000 15.48 0.00 0.00 4.35
854 887 0.517316 AGCACTGAAATTTCCGCGAC 59.483 50.000 15.48 2.92 0.00 5.19
855 888 0.516877 CAGCACTGAAATTTCCGCGA 59.483 50.000 15.48 0.00 0.00 5.87
858 903 1.533625 TCCCAGCACTGAAATTTCCG 58.466 50.000 15.48 11.61 0.00 4.30
904 949 4.164221 GGTATGGGCTATATATGTGCACCT 59.836 45.833 15.69 7.20 0.00 4.00
1008 1094 2.787601 CGATTAACGGATCCCTCGAA 57.212 50.000 6.06 0.00 38.46 3.71
1156 1242 1.085091 GCTCTTCCTGTGATGTGCAG 58.915 55.000 0.00 0.00 36.03 4.41
1283 1388 9.975218 ACCATCACCTAGTAACAAATTAAGAAT 57.025 29.630 0.00 0.00 0.00 2.40
1355 1586 4.404394 TGATTTAGCTCGTACCAATGGAGA 59.596 41.667 6.16 1.34 0.00 3.71
1377 1608 3.623510 GTGGCTAAGGTAAAGCTAGCTTG 59.376 47.826 29.94 16.35 43.89 4.01
1486 2760 9.249053 CTCTAGAATACACCTACATACATCCAT 57.751 37.037 0.00 0.00 0.00 3.41
1487 2761 8.225416 ACTCTAGAATACACCTACATACATCCA 58.775 37.037 0.00 0.00 0.00 3.41
1494 3134 9.869667 AATCTACACTCTAGAATACACCTACAT 57.130 33.333 0.00 0.00 0.00 2.29
1499 3139 9.685828 GAATGAATCTACACTCTAGAATACACC 57.314 37.037 0.00 0.00 0.00 4.16
1507 3147 9.107177 AGCAAAATGAATGAATCTACACTCTAG 57.893 33.333 0.00 0.00 0.00 2.43
1508 3148 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
1509 3149 7.828223 AGAGCAAAATGAATGAATCTACACTCT 59.172 33.333 0.00 0.00 0.00 3.24
1510 3150 7.909121 CAGAGCAAAATGAATGAATCTACACTC 59.091 37.037 0.00 0.00 0.00 3.51
1512 3152 7.533426 ACAGAGCAAAATGAATGAATCTACAC 58.467 34.615 0.00 0.00 0.00 2.90
1514 3154 9.661187 CATACAGAGCAAAATGAATGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
1515 3155 9.399797 ACATACAGAGCAAAATGAATGAATCTA 57.600 29.630 0.00 0.00 0.00 1.98
1516 3156 8.289939 ACATACAGAGCAAAATGAATGAATCT 57.710 30.769 0.00 0.00 0.00 2.40
1517 3157 9.661187 CTACATACAGAGCAAAATGAATGAATC 57.339 33.333 0.00 0.00 0.00 2.52
1518 3158 8.133627 GCTACATACAGAGCAAAATGAATGAAT 58.866 33.333 0.00 0.00 38.62 2.57
1520 3160 6.825213 AGCTACATACAGAGCAAAATGAATGA 59.175 34.615 0.00 0.00 41.36 2.57
1521 3161 7.024340 AGCTACATACAGAGCAAAATGAATG 57.976 36.000 0.00 0.00 41.36 2.67
1522 3162 6.825213 TGAGCTACATACAGAGCAAAATGAAT 59.175 34.615 0.00 0.00 41.36 2.57
1524 3164 5.733676 TGAGCTACATACAGAGCAAAATGA 58.266 37.500 0.00 0.00 41.36 2.57
1525 3165 6.615264 ATGAGCTACATACAGAGCAAAATG 57.385 37.500 0.00 0.00 41.36 2.32
1526 3166 8.781196 CAATATGAGCTACATACAGAGCAAAAT 58.219 33.333 7.69 0.00 43.12 1.82
1533 3289 8.427902 AGATTCCAATATGAGCTACATACAGA 57.572 34.615 7.69 4.03 43.12 3.41
1534 3290 8.530311 AGAGATTCCAATATGAGCTACATACAG 58.470 37.037 7.69 4.76 43.12 2.74
1535 3291 8.309656 CAGAGATTCCAATATGAGCTACATACA 58.690 37.037 7.69 0.00 43.12 2.29
1536 3292 8.526978 TCAGAGATTCCAATATGAGCTACATAC 58.473 37.037 7.69 0.00 43.12 2.39
1537 3293 8.655935 TCAGAGATTCCAATATGAGCTACATA 57.344 34.615 7.89 7.89 44.21 2.29
1541 3297 8.708378 TCTTTTCAGAGATTCCAATATGAGCTA 58.292 33.333 0.00 0.00 0.00 3.32
1543 3299 7.498570 AGTCTTTTCAGAGATTCCAATATGAGC 59.501 37.037 0.00 0.00 0.00 4.26
1544 3300 8.961294 AGTCTTTTCAGAGATTCCAATATGAG 57.039 34.615 0.00 0.00 0.00 2.90
1565 3321 7.564292 ACTCCCTCCGTTCTTAAATATAAGTCT 59.436 37.037 0.00 0.00 39.65 3.24
1567 3323 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
1577 3408 1.482593 CATGCTACTCCCTCCGTTCTT 59.517 52.381 0.00 0.00 0.00 2.52
1579 3410 0.824759 ACATGCTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
1580 3411 2.154567 TACATGCTACTCCCTCCGTT 57.845 50.000 0.00 0.00 0.00 4.44
1584 3415 7.418025 GGGAACATATATACATGCTACTCCCTC 60.418 44.444 11.26 0.00 34.31 4.30
1587 3418 7.425224 AGGGAACATATATACATGCTACTCC 57.575 40.000 0.00 0.00 0.00 3.85
1606 3437 9.729281 ACGACAAGAATTATAAAACTAAGGGAA 57.271 29.630 0.00 0.00 0.00 3.97
1609 3440 8.943002 ACCACGACAAGAATTATAAAACTAAGG 58.057 33.333 0.00 0.00 0.00 2.69
1656 4207 7.518161 TGTACGCAAGAATTAAACTGAATCAG 58.482 34.615 8.98 8.98 43.62 2.90
1718 4269 5.715070 CAAATTAATTTCTTACCACGGCCA 58.285 37.500 10.53 0.00 0.00 5.36
1741 4564 0.249073 ACATGTAGCACTCGATCGGC 60.249 55.000 16.41 11.07 0.00 5.54
1752 4576 3.748048 ACAGTTGACATGACACATGTAGC 59.252 43.478 15.70 9.80 31.52 3.58
1773 4600 7.836479 AAGTAGACAGTTGGATAGGGTATAC 57.164 40.000 0.00 0.00 0.00 1.47
1782 4609 4.019231 GGGGAAGAAAGTAGACAGTTGGAT 60.019 45.833 0.00 0.00 0.00 3.41
1917 5938 2.184167 CACGAAGGCCAAACGGTGT 61.184 57.895 5.01 0.00 0.00 4.16
2116 6137 4.802039 GTGATGGTGTGTACGTATAGTTGG 59.198 45.833 0.00 0.00 0.00 3.77
2123 6147 0.109179 GGCGTGATGGTGTGTACGTA 60.109 55.000 0.00 0.00 38.67 3.57
2130 6154 2.272146 GGGATGGCGTGATGGTGT 59.728 61.111 0.00 0.00 0.00 4.16
2147 6175 1.900585 CTTGTGCGACACATCCCACG 61.901 60.000 12.33 0.00 44.16 4.94
2184 6212 1.065418 ACCTAGCTTGCCCACACATAC 60.065 52.381 0.00 0.00 0.00 2.39
2192 6220 0.678048 CACAAGGACCTAGCTTGCCC 60.678 60.000 0.00 0.00 0.00 5.36
2196 6224 1.059913 AGCACACAAGGACCTAGCTT 58.940 50.000 0.00 0.00 0.00 3.74
2225 6253 2.530701 AGTAGGGCCAATCGAGATAGG 58.469 52.381 6.18 0.00 0.00 2.57
2303 7114 8.751242 AGTAGATTGTTTCCCTAGAAAGAGTAC 58.249 37.037 0.00 0.00 42.60 2.73
2318 7129 8.430431 GGGGCTATAGAAACTAGTAGATTGTTT 58.570 37.037 3.21 0.00 39.17 2.83
2321 7132 7.784470 AGGGGCTATAGAAACTAGTAGATTG 57.216 40.000 3.21 0.00 0.00 2.67
2389 10561 5.357878 CCAGAAATTCGAGAAATGGAATCCA 59.642 40.000 3.67 3.67 38.19 3.41
2392 10564 5.126061 CCACCAGAAATTCGAGAAATGGAAT 59.874 40.000 11.30 0.00 34.48 3.01
2400 10573 1.003118 CACCCCACCAGAAATTCGAGA 59.997 52.381 0.00 0.00 0.00 4.04
2401 10574 1.453155 CACCCCACCAGAAATTCGAG 58.547 55.000 0.00 0.00 0.00 4.04
2407 10580 2.203480 GCTGCACCCCACCAGAAA 60.203 61.111 0.00 0.00 0.00 2.52
2428 10602 2.558359 GCCTATGCACCTTTTGTTCACT 59.442 45.455 0.00 0.00 37.47 3.41
2453 10627 2.092968 GCCATACACATCTTCTCCCACA 60.093 50.000 0.00 0.00 0.00 4.17
2479 10653 6.211384 TCTCAGAGTAACATCACTTCATTCCA 59.789 38.462 0.00 0.00 0.00 3.53
2486 10660 4.160329 TGGGTCTCAGAGTAACATCACTT 58.840 43.478 0.00 0.00 0.00 3.16
2494 10668 2.334977 TGCCTTTGGGTCTCAGAGTAA 58.665 47.619 0.00 0.00 34.45 2.24
2495 10669 2.024176 TGCCTTTGGGTCTCAGAGTA 57.976 50.000 0.00 0.00 34.45 2.59
2497 10671 2.503895 AATGCCTTTGGGTCTCAGAG 57.496 50.000 0.00 0.00 34.45 3.35
2500 10674 4.671831 TGATTAAATGCCTTTGGGTCTCA 58.328 39.130 0.00 0.00 34.45 3.27
2520 10694 4.754114 GCTTATTTGGCCAACAATGTTTGA 59.246 37.500 20.35 0.00 39.21 2.69
2524 10698 4.317488 CAAGCTTATTTGGCCAACAATGT 58.683 39.130 20.35 4.73 39.21 2.71
2560 10734 1.280133 TGCACAAAGAGAGGATGGGAG 59.720 52.381 0.00 0.00 0.00 4.30
2582 10756 6.084326 TGAAATAACAAGCTTTCAGAACCC 57.916 37.500 0.00 0.00 0.00 4.11
2596 10770 4.561500 TCGACCCATCCTTGAAATAACA 57.438 40.909 0.00 0.00 0.00 2.41
2677 10854 3.244981 ACCTTCTCGAAGTAGGTCTCAGT 60.245 47.826 6.89 0.00 37.78 3.41
2679 10856 3.082548 CACCTTCTCGAAGTAGGTCTCA 58.917 50.000 9.21 0.00 40.24 3.27
2705 10882 2.113860 ACCATCACCAATTCTCCACG 57.886 50.000 0.00 0.00 0.00 4.94
2790 10967 7.359264 CCGCTAGTAAATCACTGTACATATTGC 60.359 40.741 0.00 0.00 38.24 3.56
2795 13033 4.369182 GCCGCTAGTAAATCACTGTACAT 58.631 43.478 0.00 0.00 38.24 2.29
2830 13068 8.450578 TTGTTTCAAGTTTCTGTACATCTCAT 57.549 30.769 0.00 0.00 0.00 2.90
2833 13071 8.225603 ACATTGTTTCAAGTTTCTGTACATCT 57.774 30.769 0.00 0.00 0.00 2.90
2871 13109 5.067413 CCATAAAGGAGCTCGTCTAGTACAA 59.933 44.000 9.78 0.00 41.22 2.41
2878 13116 2.694109 GGTACCATAAAGGAGCTCGTCT 59.306 50.000 9.78 0.00 41.22 4.18
2888 13126 7.489113 GCAAATTCATCACAAGGTACCATAAAG 59.511 37.037 15.94 1.06 0.00 1.85
2898 13136 3.641648 ACGTTGCAAATTCATCACAAGG 58.358 40.909 0.00 0.00 33.58 3.61
2925 13163 2.513897 CCGCCCTGGGATTTCGTC 60.514 66.667 19.27 0.00 0.00 4.20
2928 13166 1.101635 GCTAACCGCCCTGGGATTTC 61.102 60.000 19.27 0.00 44.64 2.17
2950 13188 3.384146 TGGGCCAAGCACAACAATATATG 59.616 43.478 2.13 0.00 39.83 1.78
2956 13194 2.795110 GCTGGGCCAAGCACAACAA 61.795 57.895 28.20 0.00 43.23 2.83
3000 13238 2.906354 AGAAACTTATACTGCTGCCCG 58.094 47.619 0.00 0.00 0.00 6.13
3002 13240 4.333926 CCTCAAGAAACTTATACTGCTGCC 59.666 45.833 0.00 0.00 0.00 4.85
3016 13254 4.414182 TCTCCCTAAAACACCCTCAAGAAA 59.586 41.667 0.00 0.00 0.00 2.52
3018 13256 3.593942 TCTCCCTAAAACACCCTCAAGA 58.406 45.455 0.00 0.00 0.00 3.02
3019 13257 4.327680 CTTCTCCCTAAAACACCCTCAAG 58.672 47.826 0.00 0.00 0.00 3.02
3020 13258 3.073946 CCTTCTCCCTAAAACACCCTCAA 59.926 47.826 0.00 0.00 0.00 3.02
3021 13259 2.642807 CCTTCTCCCTAAAACACCCTCA 59.357 50.000 0.00 0.00 0.00 3.86
3022 13260 2.910977 TCCTTCTCCCTAAAACACCCTC 59.089 50.000 0.00 0.00 0.00 4.30
3024 13262 3.801307 TTCCTTCTCCCTAAAACACCC 57.199 47.619 0.00 0.00 0.00 4.61
3025 13263 6.665992 AAATTTCCTTCTCCCTAAAACACC 57.334 37.500 0.00 0.00 0.00 4.16
3028 13266 6.127423 GGGCTAAATTTCCTTCTCCCTAAAAC 60.127 42.308 0.00 0.00 0.00 2.43
3029 13267 5.955959 GGGCTAAATTTCCTTCTCCCTAAAA 59.044 40.000 0.00 0.00 0.00 1.52
3030 13268 5.516044 GGGCTAAATTTCCTTCTCCCTAAA 58.484 41.667 0.00 0.00 0.00 1.85
3031 13269 4.384868 CGGGCTAAATTTCCTTCTCCCTAA 60.385 45.833 0.00 0.00 0.00 2.69
3032 13270 3.135895 CGGGCTAAATTTCCTTCTCCCTA 59.864 47.826 0.00 0.00 0.00 3.53
3034 13272 2.298610 CGGGCTAAATTTCCTTCTCCC 58.701 52.381 0.00 0.00 0.00 4.30
3035 13273 2.943690 GACGGGCTAAATTTCCTTCTCC 59.056 50.000 0.00 0.00 0.00 3.71
3036 13274 2.608090 CGACGGGCTAAATTTCCTTCTC 59.392 50.000 0.00 0.00 0.00 2.87
3038 13276 1.669265 CCGACGGGCTAAATTTCCTTC 59.331 52.381 5.81 0.00 0.00 3.46
3039 13277 1.279846 TCCGACGGGCTAAATTTCCTT 59.720 47.619 15.25 0.00 0.00 3.36
3040 13278 0.906775 TCCGACGGGCTAAATTTCCT 59.093 50.000 15.25 0.00 0.00 3.36
3041 13279 1.602377 CATCCGACGGGCTAAATTTCC 59.398 52.381 15.25 0.00 0.00 3.13
3043 13281 1.021968 GCATCCGACGGGCTAAATTT 58.978 50.000 15.25 0.00 0.00 1.82
3046 13284 0.531974 GATGCATCCGACGGGCTAAA 60.532 55.000 16.23 0.00 0.00 1.85
3047 13285 1.069090 GATGCATCCGACGGGCTAA 59.931 57.895 16.23 0.00 0.00 3.09
3048 13286 2.734591 GATGCATCCGACGGGCTA 59.265 61.111 16.23 0.00 0.00 3.93
3049 13287 4.592192 CGATGCATCCGACGGGCT 62.592 66.667 20.87 0.00 0.00 5.19
3050 13288 4.891727 ACGATGCATCCGACGGGC 62.892 66.667 20.87 11.23 0.00 6.13
3052 13290 1.658717 GAGACGATGCATCCGACGG 60.659 63.158 20.87 7.84 0.00 4.79
3054 13292 0.924090 GTTGAGACGATGCATCCGAC 59.076 55.000 20.87 15.02 0.00 4.79
3056 13294 0.179100 AGGTTGAGACGATGCATCCG 60.179 55.000 20.87 17.15 0.00 4.18
3057 13295 2.101582 AGTAGGTTGAGACGATGCATCC 59.898 50.000 20.87 7.95 0.00 3.51
3059 13297 2.760650 TGAGTAGGTTGAGACGATGCAT 59.239 45.455 0.00 0.00 0.00 3.96
3060 13298 2.167662 TGAGTAGGTTGAGACGATGCA 58.832 47.619 0.00 0.00 0.00 3.96
3062 13300 4.363999 GGATTGAGTAGGTTGAGACGATG 58.636 47.826 0.00 0.00 0.00 3.84
3063 13301 3.066900 CGGATTGAGTAGGTTGAGACGAT 59.933 47.826 0.00 0.00 0.00 3.73
3064 13302 2.422479 CGGATTGAGTAGGTTGAGACGA 59.578 50.000 0.00 0.00 0.00 4.20
3065 13303 2.422479 TCGGATTGAGTAGGTTGAGACG 59.578 50.000 0.00 0.00 0.00 4.18
3066 13304 4.657436 ATCGGATTGAGTAGGTTGAGAC 57.343 45.455 0.00 0.00 0.00 3.36
3067 13305 4.202020 CGAATCGGATTGAGTAGGTTGAGA 60.202 45.833 8.18 0.00 0.00 3.27
3068 13306 4.045104 CGAATCGGATTGAGTAGGTTGAG 58.955 47.826 8.18 0.00 0.00 3.02
3069 13307 3.446161 ACGAATCGGATTGAGTAGGTTGA 59.554 43.478 8.18 0.00 0.00 3.18
3072 13310 3.288964 AGACGAATCGGATTGAGTAGGT 58.711 45.455 8.18 0.00 0.00 3.08
3073 13311 3.992260 AGACGAATCGGATTGAGTAGG 57.008 47.619 8.18 0.00 0.00 3.18
3078 13316 3.819564 ATGGAAGACGAATCGGATTGA 57.180 42.857 8.18 0.00 0.00 2.57
3079 13317 4.882671 AAATGGAAGACGAATCGGATTG 57.117 40.909 8.18 3.58 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.