Multiple sequence alignment - TraesCS3B01G015300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G015300 chr3B 100.000 3730 0 0 458 4187 6381577 6377848 0.000000e+00 6889.0
1 TraesCS3B01G015300 chr3B 94.342 2775 119 21 487 3228 6310250 6307481 0.000000e+00 4220.0
2 TraesCS3B01G015300 chr3B 94.147 803 27 9 3399 4187 6307225 6306429 0.000000e+00 1205.0
3 TraesCS3B01G015300 chr3B 100.000 257 0 0 1 257 6382034 6381778 3.790000e-130 475.0
4 TraesCS3B01G015300 chr3B 99.556 225 1 0 1 225 778101882 778102106 1.080000e-110 411.0
5 TraesCS3B01G015300 chr3B 100.000 31 0 0 458 488 5697728 5697698 1.630000e-04 58.4
6 TraesCS3B01G015300 chrUn 94.342 2775 119 21 487 3228 242439088 242441857 0.000000e+00 4220.0
7 TraesCS3B01G015300 chrUn 94.342 2775 119 21 487 3228 242452123 242454892 0.000000e+00 4220.0
8 TraesCS3B01G015300 chrUn 94.147 803 27 9 3399 4187 242442113 242442909 0.000000e+00 1205.0
9 TraesCS3B01G015300 chrUn 94.147 803 27 9 3399 4187 242455148 242455944 0.000000e+00 1205.0
10 TraesCS3B01G015300 chr3D 92.891 2757 160 19 510 3237 4069021 4066272 0.000000e+00 3973.0
11 TraesCS3B01G015300 chr3D 91.564 972 44 18 3232 4186 4066232 4065282 0.000000e+00 1306.0
12 TraesCS3B01G015300 chr3A 92.310 2770 175 25 487 3237 9607340 9604590 0.000000e+00 3901.0
13 TraesCS3B01G015300 chr3A 90.862 974 53 14 3232 4186 9604549 9603593 0.000000e+00 1273.0
14 TraesCS3B01G015300 chr3A 94.040 151 8 1 1674 1823 9618804 9618654 1.170000e-55 228.0
15 TraesCS3B01G015300 chr2B 82.333 2032 353 6 1155 3183 173464294 173466322 0.000000e+00 1759.0
16 TraesCS3B01G015300 chr2A 82.362 2024 344 12 1164 3183 124378509 124380523 0.000000e+00 1748.0
17 TraesCS3B01G015300 chr2D 82.034 2026 348 11 1161 3183 120551217 120553229 0.000000e+00 1711.0
18 TraesCS3B01G015300 chr5A 100.000 225 0 0 1 225 697608055 697608279 2.330000e-112 416.0
19 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 13291278 13291502 5.040000e-109 405.0
20 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 14842955 14842731 5.040000e-109 405.0
21 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 15974491 15974715 5.040000e-109 405.0
22 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 16824214 16823990 5.040000e-109 405.0
23 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 522397308 522397532 5.040000e-109 405.0
24 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 549240424 549240648 5.040000e-109 405.0
25 TraesCS3B01G015300 chr1A 99.111 225 2 0 1 225 549829376 549829152 5.040000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G015300 chr3B 6377848 6382034 4186 True 3682.0 6889 100.0000 1 4187 2 chr3B.!!$R3 4186
1 TraesCS3B01G015300 chr3B 6306429 6310250 3821 True 2712.5 4220 94.2445 487 4187 2 chr3B.!!$R2 3700
2 TraesCS3B01G015300 chrUn 242439088 242442909 3821 False 2712.5 4220 94.2445 487 4187 2 chrUn.!!$F1 3700
3 TraesCS3B01G015300 chrUn 242452123 242455944 3821 False 2712.5 4220 94.2445 487 4187 2 chrUn.!!$F2 3700
4 TraesCS3B01G015300 chr3D 4065282 4069021 3739 True 2639.5 3973 92.2275 510 4186 2 chr3D.!!$R1 3676
5 TraesCS3B01G015300 chr3A 9603593 9607340 3747 True 2587.0 3901 91.5860 487 4186 2 chr3A.!!$R2 3699
6 TraesCS3B01G015300 chr2B 173464294 173466322 2028 False 1759.0 1759 82.3330 1155 3183 1 chr2B.!!$F1 2028
7 TraesCS3B01G015300 chr2A 124378509 124380523 2014 False 1748.0 1748 82.3620 1164 3183 1 chr2A.!!$F1 2019
8 TraesCS3B01G015300 chr2D 120551217 120553229 2012 False 1711.0 1711 82.0340 1161 3183 1 chr2D.!!$F1 2022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.032952 AAAGCAACGCTCGTAGGTCA 59.967 50.0 0.0 0.0 38.25 4.02 F
85 86 0.032952 AGCAACGCTCGTAGGTCAAA 59.967 50.0 0.0 0.0 30.62 2.69 F
117 118 0.035317 GTGCTCATCCCACACACAGA 59.965 55.0 0.0 0.0 34.43 3.41 F
118 119 0.035317 TGCTCATCCCACACACAGAC 59.965 55.0 0.0 0.0 0.00 3.51 F
119 120 0.035317 GCTCATCCCACACACAGACA 59.965 55.0 0.0 0.0 0.00 3.41 F
208 209 0.036388 TTCGGACCTTGGATGAGCAC 60.036 55.0 0.0 0.0 0.00 4.40 F
1794 1841 0.037975 GCCATGCCAAACAGGTGAAG 60.038 55.0 0.0 0.0 40.61 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1562 0.179018 ACACCTGCAACTCAACTCCC 60.179 55.000 0.00 0.00 0.00 4.30 R
1778 1825 2.233271 CAGACTTCACCTGTTTGGCAT 58.767 47.619 0.00 0.00 40.22 4.40 R
1794 1841 2.783135 TGAAGGAAGTTCCATGCAGAC 58.217 47.619 23.87 7.21 39.61 3.51 R
1847 1894 9.577110 CATGAATAACTGCATTGAAACAATAGT 57.423 29.630 0.00 0.00 0.00 2.12 R
2268 2315 8.651588 GCATATATCAGACTGCTGTAATTGTAC 58.348 37.037 0.00 0.00 42.84 2.90 R
2533 2580 2.290641 TGTCTGCGAAAATACCCCACAT 60.291 45.455 0.00 0.00 0.00 3.21 R
3317 3416 1.043816 ATATCTGTGAGGGCAGACCG 58.956 55.000 0.00 0.00 46.72 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.636454 TTGTATCCCTTATTTGACAGTCCT 57.364 37.500 0.00 0.00 0.00 3.85
24 25 5.989477 TGTATCCCTTATTTGACAGTCCTG 58.011 41.667 0.00 0.00 0.00 3.86
25 26 5.724370 TGTATCCCTTATTTGACAGTCCTGA 59.276 40.000 0.40 0.00 0.00 3.86
26 27 5.779241 ATCCCTTATTTGACAGTCCTGAA 57.221 39.130 0.40 0.00 0.00 3.02
27 28 5.576563 TCCCTTATTTGACAGTCCTGAAA 57.423 39.130 0.40 0.00 0.00 2.69
28 29 5.560724 TCCCTTATTTGACAGTCCTGAAAG 58.439 41.667 0.40 0.00 0.00 2.62
44 45 3.935828 CTGAAAGGTTACTAAGAGCAGGC 59.064 47.826 0.00 0.00 0.00 4.85
45 46 3.271729 GAAAGGTTACTAAGAGCAGGCC 58.728 50.000 0.00 0.00 0.00 5.19
46 47 1.952621 AGGTTACTAAGAGCAGGCCA 58.047 50.000 5.01 0.00 0.00 5.36
47 48 2.266279 AGGTTACTAAGAGCAGGCCAA 58.734 47.619 5.01 0.00 0.00 4.52
48 49 2.846827 AGGTTACTAAGAGCAGGCCAAT 59.153 45.455 5.01 0.00 0.00 3.16
49 50 3.118223 AGGTTACTAAGAGCAGGCCAATC 60.118 47.826 5.01 0.00 0.00 2.67
50 51 2.866762 GTTACTAAGAGCAGGCCAATCG 59.133 50.000 5.01 0.00 0.00 3.34
51 52 0.905357 ACTAAGAGCAGGCCAATCGT 59.095 50.000 5.01 0.02 0.00 3.73
52 53 1.279271 ACTAAGAGCAGGCCAATCGTT 59.721 47.619 5.01 0.00 0.00 3.85
53 54 1.667724 CTAAGAGCAGGCCAATCGTTG 59.332 52.381 5.01 0.00 0.00 4.10
54 55 0.036732 AAGAGCAGGCCAATCGTTGA 59.963 50.000 5.01 0.00 0.00 3.18
55 56 0.254178 AGAGCAGGCCAATCGTTGAT 59.746 50.000 5.01 0.00 0.00 2.57
56 57 0.379669 GAGCAGGCCAATCGTTGATG 59.620 55.000 5.01 0.00 0.00 3.07
57 58 1.033746 AGCAGGCCAATCGTTGATGG 61.034 55.000 5.01 0.00 0.00 3.51
58 59 1.315257 GCAGGCCAATCGTTGATGGT 61.315 55.000 5.01 0.00 0.00 3.55
59 60 1.176527 CAGGCCAATCGTTGATGGTT 58.823 50.000 5.01 0.00 0.00 3.67
60 61 2.364632 CAGGCCAATCGTTGATGGTTA 58.635 47.619 5.01 0.00 0.00 2.85
61 62 2.097466 CAGGCCAATCGTTGATGGTTAC 59.903 50.000 5.01 0.00 0.00 2.50
62 63 1.063469 GGCCAATCGTTGATGGTTACG 59.937 52.381 0.00 0.00 39.03 3.18
68 69 3.799137 TCGTTGATGGTTACGAAAAGC 57.201 42.857 0.00 0.00 43.08 3.51
69 70 3.132160 TCGTTGATGGTTACGAAAAGCA 58.868 40.909 9.00 9.00 43.08 3.91
70 71 3.560481 TCGTTGATGGTTACGAAAAGCAA 59.440 39.130 10.27 0.00 43.08 3.91
71 72 3.662186 CGTTGATGGTTACGAAAAGCAAC 59.338 43.478 10.27 8.75 40.03 4.17
72 73 3.529634 TGATGGTTACGAAAAGCAACG 57.470 42.857 10.27 0.00 0.00 4.10
73 74 2.239201 GATGGTTACGAAAAGCAACGC 58.761 47.619 10.27 0.00 0.00 4.84
74 75 1.301423 TGGTTACGAAAAGCAACGCT 58.699 45.000 5.01 0.00 42.56 5.07
75 76 1.262151 TGGTTACGAAAAGCAACGCTC 59.738 47.619 5.01 0.00 38.25 5.03
76 77 1.577221 GTTACGAAAAGCAACGCTCG 58.423 50.000 0.00 0.00 38.25 5.03
77 78 1.071041 GTTACGAAAAGCAACGCTCGT 60.071 47.619 6.90 6.90 38.25 4.18
78 79 2.049077 TACGAAAAGCAACGCTCGTA 57.951 45.000 5.25 5.25 38.25 3.43
79 80 0.782384 ACGAAAAGCAACGCTCGTAG 59.218 50.000 0.00 0.00 38.25 3.51
80 81 0.093026 CGAAAAGCAACGCTCGTAGG 59.907 55.000 0.00 0.00 38.25 3.18
81 82 1.145803 GAAAAGCAACGCTCGTAGGT 58.854 50.000 0.00 0.00 38.25 3.08
82 83 1.126296 GAAAAGCAACGCTCGTAGGTC 59.874 52.381 0.00 0.00 38.25 3.85
83 84 0.032952 AAAGCAACGCTCGTAGGTCA 59.967 50.000 0.00 0.00 38.25 4.02
84 85 0.032952 AAGCAACGCTCGTAGGTCAA 59.967 50.000 0.00 0.00 38.25 3.18
85 86 0.032952 AGCAACGCTCGTAGGTCAAA 59.967 50.000 0.00 0.00 30.62 2.69
86 87 1.076332 GCAACGCTCGTAGGTCAAAT 58.924 50.000 0.00 0.00 0.00 2.32
87 88 1.463444 GCAACGCTCGTAGGTCAAATT 59.537 47.619 0.00 0.00 0.00 1.82
88 89 2.474032 GCAACGCTCGTAGGTCAAATTC 60.474 50.000 0.00 0.00 0.00 2.17
89 90 2.005971 ACGCTCGTAGGTCAAATTCC 57.994 50.000 0.00 0.00 0.00 3.01
90 91 1.549170 ACGCTCGTAGGTCAAATTCCT 59.451 47.619 0.00 0.00 38.91 3.36
91 92 2.194271 CGCTCGTAGGTCAAATTCCTC 58.806 52.381 0.00 0.00 36.60 3.71
92 93 2.159226 CGCTCGTAGGTCAAATTCCTCT 60.159 50.000 0.00 0.00 36.60 3.69
93 94 3.676324 CGCTCGTAGGTCAAATTCCTCTT 60.676 47.826 0.00 0.00 36.60 2.85
94 95 3.619038 GCTCGTAGGTCAAATTCCTCTTG 59.381 47.826 0.00 0.00 36.60 3.02
95 96 4.822026 CTCGTAGGTCAAATTCCTCTTGT 58.178 43.478 0.00 0.00 36.60 3.16
96 97 5.223449 TCGTAGGTCAAATTCCTCTTGTT 57.777 39.130 0.00 0.00 36.60 2.83
97 98 5.617252 TCGTAGGTCAAATTCCTCTTGTTT 58.383 37.500 0.00 0.00 36.60 2.83
98 99 5.468746 TCGTAGGTCAAATTCCTCTTGTTTG 59.531 40.000 0.00 0.00 36.60 2.93
99 100 5.238650 CGTAGGTCAAATTCCTCTTGTTTGT 59.761 40.000 0.00 0.00 36.60 2.83
100 101 5.520376 AGGTCAAATTCCTCTTGTTTGTG 57.480 39.130 0.00 0.00 35.09 3.33
101 102 4.051237 GGTCAAATTCCTCTTGTTTGTGC 58.949 43.478 0.00 0.00 35.09 4.57
102 103 4.202151 GGTCAAATTCCTCTTGTTTGTGCT 60.202 41.667 0.00 0.00 35.09 4.40
103 104 4.978580 GTCAAATTCCTCTTGTTTGTGCTC 59.021 41.667 0.00 0.00 35.09 4.26
104 105 4.644234 TCAAATTCCTCTTGTTTGTGCTCA 59.356 37.500 0.00 0.00 35.09 4.26
105 106 5.302568 TCAAATTCCTCTTGTTTGTGCTCAT 59.697 36.000 0.00 0.00 35.09 2.90
106 107 5.382618 AATTCCTCTTGTTTGTGCTCATC 57.617 39.130 0.00 0.00 0.00 2.92
107 108 2.783135 TCCTCTTGTTTGTGCTCATCC 58.217 47.619 0.00 0.00 0.00 3.51
108 109 1.815003 CCTCTTGTTTGTGCTCATCCC 59.185 52.381 0.00 0.00 0.00 3.85
109 110 2.507484 CTCTTGTTTGTGCTCATCCCA 58.493 47.619 0.00 0.00 0.00 4.37
110 111 2.227388 CTCTTGTTTGTGCTCATCCCAC 59.773 50.000 0.00 0.00 0.00 4.61
111 112 1.955778 CTTGTTTGTGCTCATCCCACA 59.044 47.619 0.00 0.00 41.11 4.17
112 113 1.317613 TGTTTGTGCTCATCCCACAC 58.682 50.000 0.00 0.00 42.39 3.82
113 114 1.317613 GTTTGTGCTCATCCCACACA 58.682 50.000 0.00 0.00 42.39 3.72
114 115 1.001378 GTTTGTGCTCATCCCACACAC 60.001 52.381 0.00 0.00 43.57 3.82
115 116 0.182299 TTGTGCTCATCCCACACACA 59.818 50.000 0.00 0.00 43.57 3.72
116 117 0.250424 TGTGCTCATCCCACACACAG 60.250 55.000 0.00 0.00 39.29 3.66
117 118 0.035317 GTGCTCATCCCACACACAGA 59.965 55.000 0.00 0.00 34.43 3.41
118 119 0.035317 TGCTCATCCCACACACAGAC 59.965 55.000 0.00 0.00 0.00 3.51
119 120 0.035317 GCTCATCCCACACACAGACA 59.965 55.000 0.00 0.00 0.00 3.41
120 121 1.800805 CTCATCCCACACACAGACAC 58.199 55.000 0.00 0.00 0.00 3.67
121 122 0.396435 TCATCCCACACACAGACACC 59.604 55.000 0.00 0.00 0.00 4.16
122 123 0.108396 CATCCCACACACAGACACCA 59.892 55.000 0.00 0.00 0.00 4.17
123 124 0.108585 ATCCCACACACAGACACCAC 59.891 55.000 0.00 0.00 0.00 4.16
124 125 1.525995 CCCACACACAGACACCACC 60.526 63.158 0.00 0.00 0.00 4.61
125 126 1.525995 CCACACACAGACACCACCC 60.526 63.158 0.00 0.00 0.00 4.61
126 127 1.525995 CACACACAGACACCACCCC 60.526 63.158 0.00 0.00 0.00 4.95
127 128 1.998438 ACACACAGACACCACCCCA 60.998 57.895 0.00 0.00 0.00 4.96
128 129 1.525995 CACACAGACACCACCCCAC 60.526 63.158 0.00 0.00 0.00 4.61
129 130 1.998438 ACACAGACACCACCCCACA 60.998 57.895 0.00 0.00 0.00 4.17
130 131 1.227943 CACAGACACCACCCCACAG 60.228 63.158 0.00 0.00 0.00 3.66
131 132 2.281761 CAGACACCACCCCACAGC 60.282 66.667 0.00 0.00 0.00 4.40
132 133 2.448542 AGACACCACCCCACAGCT 60.449 61.111 0.00 0.00 0.00 4.24
133 134 2.281761 GACACCACCCCACAGCTG 60.282 66.667 13.48 13.48 0.00 4.24
134 135 3.096495 ACACCACCCCACAGCTGT 61.096 61.111 15.25 15.25 0.00 4.40
135 136 1.764571 GACACCACCCCACAGCTGTA 61.765 60.000 21.20 0.00 0.00 2.74
136 137 1.349542 ACACCACCCCACAGCTGTAA 61.350 55.000 21.20 0.00 0.00 2.41
137 138 0.179004 CACCACCCCACAGCTGTAAA 60.179 55.000 21.20 0.00 0.00 2.01
138 139 0.553819 ACCACCCCACAGCTGTAAAA 59.446 50.000 21.20 0.00 0.00 1.52
139 140 1.247567 CCACCCCACAGCTGTAAAAG 58.752 55.000 21.20 11.20 0.00 2.27
140 141 1.478654 CCACCCCACAGCTGTAAAAGT 60.479 52.381 21.20 11.87 0.00 2.66
141 142 2.306847 CACCCCACAGCTGTAAAAGTT 58.693 47.619 21.20 0.00 0.00 2.66
142 143 2.293399 CACCCCACAGCTGTAAAAGTTC 59.707 50.000 21.20 0.00 0.00 3.01
143 144 2.092103 ACCCCACAGCTGTAAAAGTTCA 60.092 45.455 21.20 0.00 0.00 3.18
144 145 3.157087 CCCCACAGCTGTAAAAGTTCAT 58.843 45.455 21.20 0.00 0.00 2.57
145 146 3.191371 CCCCACAGCTGTAAAAGTTCATC 59.809 47.826 21.20 0.00 0.00 2.92
146 147 3.820467 CCCACAGCTGTAAAAGTTCATCA 59.180 43.478 21.20 0.00 0.00 3.07
147 148 4.278170 CCCACAGCTGTAAAAGTTCATCAA 59.722 41.667 21.20 0.00 0.00 2.57
148 149 5.215160 CCACAGCTGTAAAAGTTCATCAAC 58.785 41.667 21.20 0.00 0.00 3.18
149 150 5.009010 CCACAGCTGTAAAAGTTCATCAACT 59.991 40.000 21.20 0.00 45.43 3.16
150 151 6.204688 CCACAGCTGTAAAAGTTCATCAACTA 59.795 38.462 21.20 0.00 42.45 2.24
151 152 7.255104 CCACAGCTGTAAAAGTTCATCAACTAA 60.255 37.037 21.20 0.00 42.45 2.24
152 153 8.292448 CACAGCTGTAAAAGTTCATCAACTAAT 58.708 33.333 21.20 0.00 42.45 1.73
153 154 8.292448 ACAGCTGTAAAAGTTCATCAACTAATG 58.708 33.333 20.16 0.00 42.45 1.90
154 155 7.752239 CAGCTGTAAAAGTTCATCAACTAATGG 59.248 37.037 5.25 0.00 42.45 3.16
155 156 6.528072 GCTGTAAAAGTTCATCAACTAATGGC 59.472 38.462 0.00 0.00 42.45 4.40
156 157 6.919721 TGTAAAAGTTCATCAACTAATGGCC 58.080 36.000 0.00 0.00 42.45 5.36
157 158 6.719370 TGTAAAAGTTCATCAACTAATGGCCT 59.281 34.615 3.32 0.00 42.45 5.19
158 159 6.670695 AAAAGTTCATCAACTAATGGCCTT 57.329 33.333 3.32 0.00 42.45 4.35
159 160 7.775053 AAAAGTTCATCAACTAATGGCCTTA 57.225 32.000 3.32 0.00 42.45 2.69
160 161 7.396540 AAAGTTCATCAACTAATGGCCTTAG 57.603 36.000 16.08 16.08 42.45 2.18
161 162 5.440610 AGTTCATCAACTAATGGCCTTAGG 58.559 41.667 19.68 0.00 41.39 2.69
162 163 5.044846 AGTTCATCAACTAATGGCCTTAGGT 60.045 40.000 19.68 13.87 41.39 3.08
163 164 6.157994 AGTTCATCAACTAATGGCCTTAGGTA 59.842 38.462 19.68 9.57 41.39 3.08
164 165 5.925509 TCATCAACTAATGGCCTTAGGTAC 58.074 41.667 19.68 0.00 41.07 3.34
165 166 5.427157 TCATCAACTAATGGCCTTAGGTACA 59.573 40.000 19.68 0.00 41.07 2.90
166 167 5.093849 TCAACTAATGGCCTTAGGTACAC 57.906 43.478 19.68 0.00 41.07 2.90
167 168 4.532916 TCAACTAATGGCCTTAGGTACACA 59.467 41.667 19.68 0.00 41.07 3.72
168 169 5.190925 TCAACTAATGGCCTTAGGTACACAT 59.809 40.000 19.68 0.00 41.07 3.21
169 170 5.291905 ACTAATGGCCTTAGGTACACATC 57.708 43.478 19.68 0.00 41.07 3.06
170 171 2.910688 ATGGCCTTAGGTACACATCG 57.089 50.000 3.32 0.00 0.00 3.84
171 172 1.855295 TGGCCTTAGGTACACATCGA 58.145 50.000 3.32 0.00 0.00 3.59
172 173 2.394632 TGGCCTTAGGTACACATCGAT 58.605 47.619 3.32 0.00 0.00 3.59
173 174 2.102420 TGGCCTTAGGTACACATCGATG 59.898 50.000 23.68 23.68 0.00 3.84
174 175 2.102588 GGCCTTAGGTACACATCGATGT 59.897 50.000 25.18 25.18 42.84 3.06
175 176 3.381949 GCCTTAGGTACACATCGATGTC 58.618 50.000 27.79 16.63 39.39 3.06
176 177 3.629058 CCTTAGGTACACATCGATGTCG 58.371 50.000 27.79 22.95 39.39 4.35
177 178 3.066342 CCTTAGGTACACATCGATGTCGT 59.934 47.826 27.79 26.59 39.39 4.34
178 179 4.439700 CCTTAGGTACACATCGATGTCGTT 60.440 45.833 27.79 16.87 39.39 3.85
179 180 2.876091 AGGTACACATCGATGTCGTTG 58.124 47.619 27.79 18.59 42.75 4.10
180 181 1.323534 GGTACACATCGATGTCGTTGC 59.676 52.381 27.79 20.59 41.31 4.17
181 182 1.323534 GTACACATCGATGTCGTTGCC 59.676 52.381 27.79 15.14 41.31 4.52
182 183 1.344837 CACATCGATGTCGTTGCCG 59.655 57.895 27.79 11.44 41.31 5.69
183 184 1.809619 ACATCGATGTCGTTGCCGG 60.810 57.895 25.18 0.00 41.31 6.13
184 185 2.202878 ATCGATGTCGTTGCCGGG 60.203 61.111 2.18 0.00 40.80 5.73
185 186 3.014085 ATCGATGTCGTTGCCGGGT 62.014 57.895 2.18 0.00 40.80 5.28
186 187 2.515996 ATCGATGTCGTTGCCGGGTT 62.516 55.000 2.18 0.00 40.80 4.11
187 188 2.867472 GATGTCGTTGCCGGGTTG 59.133 61.111 2.18 0.00 33.95 3.77
188 189 3.322706 GATGTCGTTGCCGGGTTGC 62.323 63.158 2.18 0.00 33.95 4.17
189 190 3.842925 ATGTCGTTGCCGGGTTGCT 62.843 57.895 2.18 0.00 33.95 3.91
190 191 3.284449 GTCGTTGCCGGGTTGCTT 61.284 61.111 2.18 0.00 33.95 3.91
191 192 2.975799 TCGTTGCCGGGTTGCTTC 60.976 61.111 2.18 0.00 33.95 3.86
192 193 4.383602 CGTTGCCGGGTTGCTTCG 62.384 66.667 2.18 0.00 0.00 3.79
198 199 2.032071 CGGGTTGCTTCGGACCTT 59.968 61.111 0.00 0.00 36.18 3.50
199 200 2.325082 CGGGTTGCTTCGGACCTTG 61.325 63.158 0.00 0.00 36.18 3.61
200 201 1.971695 GGGTTGCTTCGGACCTTGG 60.972 63.158 0.00 0.00 36.18 3.61
201 202 1.072505 GGTTGCTTCGGACCTTGGA 59.927 57.895 0.00 0.00 33.08 3.53
202 203 0.322546 GGTTGCTTCGGACCTTGGAT 60.323 55.000 0.00 0.00 33.08 3.41
203 204 0.804989 GTTGCTTCGGACCTTGGATG 59.195 55.000 0.00 0.00 0.00 3.51
204 205 0.690192 TTGCTTCGGACCTTGGATGA 59.310 50.000 0.00 0.00 0.00 2.92
205 206 0.250234 TGCTTCGGACCTTGGATGAG 59.750 55.000 0.00 0.00 0.00 2.90
206 207 1.092345 GCTTCGGACCTTGGATGAGC 61.092 60.000 0.00 0.00 0.00 4.26
207 208 0.250234 CTTCGGACCTTGGATGAGCA 59.750 55.000 0.00 0.00 0.00 4.26
208 209 0.036388 TTCGGACCTTGGATGAGCAC 60.036 55.000 0.00 0.00 0.00 4.40
209 210 0.904865 TCGGACCTTGGATGAGCACT 60.905 55.000 0.00 0.00 0.00 4.40
210 211 0.742281 CGGACCTTGGATGAGCACTG 60.742 60.000 0.00 0.00 0.00 3.66
211 212 0.393537 GGACCTTGGATGAGCACTGG 60.394 60.000 0.00 0.00 0.00 4.00
212 213 1.001641 ACCTTGGATGAGCACTGGC 60.002 57.895 0.00 0.00 41.61 4.85
213 214 1.001764 CCTTGGATGAGCACTGGCA 60.002 57.895 0.00 0.00 44.61 4.92
214 215 0.395311 CCTTGGATGAGCACTGGCAT 60.395 55.000 0.00 0.00 44.61 4.40
215 216 1.022735 CTTGGATGAGCACTGGCATC 58.977 55.000 0.00 0.00 44.61 3.91
216 217 0.328926 TTGGATGAGCACTGGCATCA 59.671 50.000 0.00 0.00 44.61 3.07
217 218 0.549469 TGGATGAGCACTGGCATCAT 59.451 50.000 1.09 1.09 44.61 2.45
218 219 1.770061 TGGATGAGCACTGGCATCATA 59.230 47.619 1.50 0.00 44.61 2.15
219 220 2.173143 TGGATGAGCACTGGCATCATAA 59.827 45.455 1.50 0.00 44.61 1.90
220 221 3.181437 TGGATGAGCACTGGCATCATAAT 60.181 43.478 1.50 0.00 44.61 1.28
221 222 3.190744 GGATGAGCACTGGCATCATAATG 59.809 47.826 1.50 0.00 44.61 1.90
222 223 3.564053 TGAGCACTGGCATCATAATGA 57.436 42.857 0.00 0.00 44.61 2.57
223 224 3.888583 TGAGCACTGGCATCATAATGAA 58.111 40.909 0.00 0.00 44.61 2.57
224 225 3.628942 TGAGCACTGGCATCATAATGAAC 59.371 43.478 0.00 0.00 44.61 3.18
225 226 3.623703 AGCACTGGCATCATAATGAACA 58.376 40.909 0.00 0.00 44.61 3.18
226 227 4.212716 AGCACTGGCATCATAATGAACAT 58.787 39.130 0.00 0.00 44.61 2.71
227 228 5.379187 AGCACTGGCATCATAATGAACATA 58.621 37.500 0.00 0.00 44.61 2.29
228 229 5.829391 AGCACTGGCATCATAATGAACATAA 59.171 36.000 0.00 0.00 44.61 1.90
229 230 6.016527 AGCACTGGCATCATAATGAACATAAG 60.017 38.462 0.00 0.00 44.61 1.73
230 231 6.675026 CACTGGCATCATAATGAACATAAGG 58.325 40.000 0.00 0.00 34.61 2.69
231 232 5.771666 ACTGGCATCATAATGAACATAAGGG 59.228 40.000 0.00 0.00 34.61 3.95
232 233 4.523943 TGGCATCATAATGAACATAAGGGC 59.476 41.667 0.00 0.00 34.61 5.19
233 234 4.379813 GGCATCATAATGAACATAAGGGCG 60.380 45.833 0.00 0.00 34.61 6.13
234 235 4.455533 GCATCATAATGAACATAAGGGCGA 59.544 41.667 0.00 0.00 34.61 5.54
235 236 5.048782 GCATCATAATGAACATAAGGGCGAA 60.049 40.000 0.00 0.00 34.61 4.70
236 237 6.349611 GCATCATAATGAACATAAGGGCGAAT 60.350 38.462 0.00 0.00 34.61 3.34
237 238 7.596494 CATCATAATGAACATAAGGGCGAATT 58.404 34.615 0.00 0.00 34.61 2.17
238 239 7.202016 TCATAATGAACATAAGGGCGAATTC 57.798 36.000 0.00 0.00 0.00 2.17
239 240 4.552166 AATGAACATAAGGGCGAATTCG 57.448 40.909 23.34 23.34 43.27 3.34
474 475 2.554272 GGTAATTATGCGGCCGCG 59.446 61.111 41.73 12.29 45.51 6.46
475 476 1.957186 GGTAATTATGCGGCCGCGA 60.957 57.895 41.73 30.90 45.51 5.87
476 477 1.500512 GGTAATTATGCGGCCGCGAA 61.501 55.000 41.73 36.25 45.51 4.70
477 478 0.515564 GTAATTATGCGGCCGCGAAT 59.484 50.000 41.73 36.69 45.51 3.34
478 479 1.069500 GTAATTATGCGGCCGCGAATT 60.069 47.619 40.73 40.73 45.51 2.17
479 480 0.040425 AATTATGCGGCCGCGAATTC 60.040 50.000 37.50 20.38 45.51 2.17
480 481 2.170260 ATTATGCGGCCGCGAATTCG 62.170 55.000 41.73 23.34 45.51 3.34
500 501 8.843885 AATTCGCCCTTAATTTATCTAGTACC 57.156 34.615 0.00 0.00 0.00 3.34
561 562 3.855689 TCTTTCTGCTTTGCTTATGCC 57.144 42.857 0.00 0.00 38.71 4.40
592 593 2.697751 CCTGGCTAGTCAGTCATTAGCT 59.302 50.000 22.41 0.00 39.70 3.32
706 725 0.108615 CCACTGGCTCTACTTGACCG 60.109 60.000 0.00 0.00 0.00 4.79
803 844 3.200593 GGATGACGGCTGCAGCAG 61.201 66.667 37.63 35.30 44.36 4.24
813 854 0.040603 GCTGCAGCAGTGACTGTTTC 60.041 55.000 33.36 3.04 39.96 2.78
888 929 1.544825 TTCTTGGGCTGTCCTCTCCG 61.545 60.000 0.00 0.00 36.20 4.63
890 931 2.232298 CTTGGGCTGTCCTCTCCGTC 62.232 65.000 0.00 0.00 36.20 4.79
1011 1055 4.865761 TCGTCTATGCGCCGTGCC 62.866 66.667 4.18 0.00 45.60 5.01
1043 1087 3.890674 GCGTCGAGCCCTTTTGAT 58.109 55.556 0.00 0.00 40.81 2.57
1049 1093 1.002366 CGAGCCCTTTTGATCAGACG 58.998 55.000 0.00 0.00 0.00 4.18
1129 1176 0.900647 CGAGGAGGAACCCAGTCAGT 60.901 60.000 0.00 0.00 40.05 3.41
1152 1199 3.474600 CTCTGTTGGCAATGAGGATAGG 58.525 50.000 19.06 1.40 0.00 2.57
1154 1201 1.284491 TGTTGGCAATGAGGATAGGCA 59.716 47.619 1.92 0.00 34.56 4.75
1207 1254 2.990479 GGACATCGAGCTGGGGTT 59.010 61.111 0.00 0.00 0.00 4.11
1317 1364 2.088104 TGCCACGGAGGATTAGAGAT 57.912 50.000 0.00 0.00 41.22 2.75
1385 1432 1.675552 CCGGAGTTGTTTGAGTTGGT 58.324 50.000 0.00 0.00 0.00 3.67
1515 1562 1.738099 CGTCGAGGCCAAGAAGGTG 60.738 63.158 5.01 0.00 40.61 4.00
1794 1841 0.037975 GCCATGCCAAACAGGTGAAG 60.038 55.000 0.00 0.00 40.61 3.02
1847 1894 0.771127 AGAGGCTACCCTTGCAACAA 59.229 50.000 0.00 0.00 43.12 2.83
2268 2315 6.497437 TCATCATAATTTTGTTCCAGATGCG 58.503 36.000 0.00 0.00 33.51 4.73
2589 2636 3.066342 GCTACGTTCCTGATACTGTGCTA 59.934 47.826 0.00 0.00 0.00 3.49
2742 2789 3.128242 GCCATGATGACAAACTTCCTGAG 59.872 47.826 0.00 0.00 0.00 3.35
2782 2829 1.067762 TATGATTGGGGAGGGGCTGG 61.068 60.000 0.00 0.00 0.00 4.85
2814 2861 3.003897 GGATCCTGTACACGTCTCTGATC 59.996 52.174 3.84 0.00 0.00 2.92
2994 3041 2.107950 TGATGAACAAGGGGCTTACG 57.892 50.000 0.00 0.00 0.00 3.18
3045 3092 6.765989 TCATAGTTGGATACTTCAAAATCGGG 59.234 38.462 0.00 0.00 38.33 5.14
3144 3191 2.119029 GGGCCTTGGTAACGATGGC 61.119 63.158 0.84 2.55 42.56 4.40
3145 3192 3.509659 GCCTTGGTAACGATGGCC 58.490 61.111 0.00 0.00 37.81 5.36
3215 3262 4.357996 GTTATCACAGAGCTACGGTAACC 58.642 47.826 0.00 0.00 0.00 2.85
3255 3351 0.472471 TCTGTTCCCTTTGCTTCCGT 59.528 50.000 0.00 0.00 0.00 4.69
3262 3361 0.318120 CCTTTGCTTCCGTTGCCATT 59.682 50.000 0.00 0.00 0.00 3.16
3296 3395 5.075900 AGGGAGGGAAAGAAATAGGTCAAAA 59.924 40.000 0.00 0.00 0.00 2.44
3314 3413 6.866347 GTCAAAATTTTCACTTTGACGATGG 58.134 36.000 10.81 0.00 46.67 3.51
3315 3414 6.695278 GTCAAAATTTTCACTTTGACGATGGA 59.305 34.615 10.81 0.00 46.67 3.41
3316 3415 6.917477 TCAAAATTTTCACTTTGACGATGGAG 59.083 34.615 0.00 0.00 36.79 3.86
3317 3416 3.896648 TTTTCACTTTGACGATGGAGC 57.103 42.857 0.00 0.00 0.00 4.70
3318 3417 1.428448 TTCACTTTGACGATGGAGCG 58.572 50.000 0.00 0.00 37.29 5.03
3319 3418 0.389817 TCACTTTGACGATGGAGCGG 60.390 55.000 0.00 0.00 35.12 5.52
3320 3419 0.670546 CACTTTGACGATGGAGCGGT 60.671 55.000 0.00 0.00 35.12 5.68
3321 3420 0.389948 ACTTTGACGATGGAGCGGTC 60.390 55.000 5.93 5.93 35.12 4.79
3322 3421 0.108615 CTTTGACGATGGAGCGGTCT 60.109 55.000 15.18 0.00 35.12 3.85
3323 3422 0.389817 TTTGACGATGGAGCGGTCTG 60.390 55.000 15.18 4.99 35.12 3.51
3324 3423 2.583593 GACGATGGAGCGGTCTGC 60.584 66.667 15.18 0.00 46.98 4.26
3333 3432 3.695606 GCGGTCTGCCCTCACAGA 61.696 66.667 0.00 0.00 44.32 3.41
3349 3448 6.226787 CCTCACAGATATTCAATACCTGGAC 58.773 44.000 3.67 0.00 0.00 4.02
3404 3587 5.300286 GGCTCATGCAAATAATCAAGTAGGT 59.700 40.000 0.00 0.00 41.91 3.08
3602 3786 5.659079 CCTCAAGTTAGATGAAGAGGTAGGT 59.341 44.000 0.00 0.00 38.23 3.08
3638 3822 9.489084 TCGCATGCTAGATATTGTAAAAATACT 57.511 29.630 17.13 0.00 0.00 2.12
3686 3882 6.885735 TTTAGTTTTGCTCTGCTTTTGTTC 57.114 33.333 0.00 0.00 0.00 3.18
3803 3999 0.108585 TTCTGCTGCCGAAAAGTCCT 59.891 50.000 3.93 0.00 0.00 3.85
3980 4178 2.606551 GCTTTTTGGCTCAGCAGACTTC 60.607 50.000 0.00 0.00 33.45 3.01
4010 4208 3.887621 AGCTCTTTAACTGCGGATACA 57.112 42.857 0.00 0.00 0.00 2.29
4015 4213 5.121768 GCTCTTTAACTGCGGATACAGAAAA 59.878 40.000 0.00 0.00 40.25 2.29
4024 4222 6.823689 ACTGCGGATACAGAAAATTCAGTTAT 59.176 34.615 0.00 0.00 40.25 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.214615 TCAGGACTGTCAAATAAGGGATACAA 59.785 38.462 10.38 0.00 39.74 2.41
1 2 5.724370 TCAGGACTGTCAAATAAGGGATACA 59.276 40.000 10.38 0.00 39.74 2.29
2 3 6.235231 TCAGGACTGTCAAATAAGGGATAC 57.765 41.667 10.38 0.00 0.00 2.24
4 5 5.779241 TTCAGGACTGTCAAATAAGGGAT 57.221 39.130 10.38 0.00 0.00 3.85
5 6 5.514834 CCTTTCAGGACTGTCAAATAAGGGA 60.515 44.000 10.38 0.00 37.67 4.20
6 7 4.702131 CCTTTCAGGACTGTCAAATAAGGG 59.298 45.833 10.38 4.52 37.67 3.95
8 9 6.884280 AACCTTTCAGGACTGTCAAATAAG 57.116 37.500 10.38 7.40 37.67 1.73
9 10 7.514721 AGTAACCTTTCAGGACTGTCAAATAA 58.485 34.615 10.38 0.00 37.67 1.40
10 11 7.074653 AGTAACCTTTCAGGACTGTCAAATA 57.925 36.000 10.38 0.00 37.67 1.40
11 12 5.941788 AGTAACCTTTCAGGACTGTCAAAT 58.058 37.500 10.38 0.00 37.67 2.32
12 13 5.367945 AGTAACCTTTCAGGACTGTCAAA 57.632 39.130 10.38 1.17 37.67 2.69
13 14 6.325545 TCTTAGTAACCTTTCAGGACTGTCAA 59.674 38.462 10.38 0.00 37.67 3.18
14 15 5.836898 TCTTAGTAACCTTTCAGGACTGTCA 59.163 40.000 10.38 0.00 37.67 3.58
15 16 6.342338 TCTTAGTAACCTTTCAGGACTGTC 57.658 41.667 0.00 0.00 37.67 3.51
16 17 5.279556 GCTCTTAGTAACCTTTCAGGACTGT 60.280 44.000 0.00 0.00 37.67 3.55
17 18 5.172205 GCTCTTAGTAACCTTTCAGGACTG 58.828 45.833 0.00 0.00 37.67 3.51
18 19 4.838986 TGCTCTTAGTAACCTTTCAGGACT 59.161 41.667 0.00 0.00 37.67 3.85
19 20 5.148651 TGCTCTTAGTAACCTTTCAGGAC 57.851 43.478 0.00 0.00 37.67 3.85
20 21 4.223032 CCTGCTCTTAGTAACCTTTCAGGA 59.777 45.833 0.00 0.00 40.58 3.86
21 22 4.508662 CCTGCTCTTAGTAACCTTTCAGG 58.491 47.826 0.00 0.00 42.49 3.86
22 23 3.935828 GCCTGCTCTTAGTAACCTTTCAG 59.064 47.826 0.00 0.00 0.00 3.02
23 24 3.307480 GGCCTGCTCTTAGTAACCTTTCA 60.307 47.826 0.00 0.00 0.00 2.69
24 25 3.271729 GGCCTGCTCTTAGTAACCTTTC 58.728 50.000 0.00 0.00 0.00 2.62
25 26 2.642807 TGGCCTGCTCTTAGTAACCTTT 59.357 45.455 3.32 0.00 0.00 3.11
26 27 2.266279 TGGCCTGCTCTTAGTAACCTT 58.734 47.619 3.32 0.00 0.00 3.50
27 28 1.952621 TGGCCTGCTCTTAGTAACCT 58.047 50.000 3.32 0.00 0.00 3.50
28 29 2.781681 TTGGCCTGCTCTTAGTAACC 57.218 50.000 3.32 0.00 0.00 2.85
29 30 2.866762 CGATTGGCCTGCTCTTAGTAAC 59.133 50.000 3.32 0.00 0.00 2.50
30 31 2.500098 ACGATTGGCCTGCTCTTAGTAA 59.500 45.455 3.32 0.00 0.00 2.24
31 32 2.108168 ACGATTGGCCTGCTCTTAGTA 58.892 47.619 3.32 0.00 0.00 1.82
32 33 0.905357 ACGATTGGCCTGCTCTTAGT 59.095 50.000 3.32 0.00 0.00 2.24
33 34 1.667724 CAACGATTGGCCTGCTCTTAG 59.332 52.381 3.32 0.00 0.00 2.18
34 35 1.277842 TCAACGATTGGCCTGCTCTTA 59.722 47.619 3.32 0.00 0.00 2.10
35 36 0.036732 TCAACGATTGGCCTGCTCTT 59.963 50.000 3.32 0.00 0.00 2.85
36 37 0.254178 ATCAACGATTGGCCTGCTCT 59.746 50.000 3.32 0.00 0.00 4.09
37 38 0.379669 CATCAACGATTGGCCTGCTC 59.620 55.000 3.32 0.00 0.00 4.26
38 39 1.033746 CCATCAACGATTGGCCTGCT 61.034 55.000 3.32 0.00 0.00 4.24
39 40 1.315257 ACCATCAACGATTGGCCTGC 61.315 55.000 3.32 0.00 0.00 4.85
40 41 1.176527 AACCATCAACGATTGGCCTG 58.823 50.000 3.32 0.00 0.00 4.85
41 42 2.365582 GTAACCATCAACGATTGGCCT 58.634 47.619 3.32 0.00 0.00 5.19
42 43 1.063469 CGTAACCATCAACGATTGGCC 59.937 52.381 0.00 0.00 41.55 5.36
43 44 2.004017 TCGTAACCATCAACGATTGGC 58.996 47.619 0.00 0.00 42.74 4.52
44 45 4.671880 TTTCGTAACCATCAACGATTGG 57.328 40.909 0.00 0.00 46.44 3.16
45 46 4.553429 GCTTTTCGTAACCATCAACGATTG 59.447 41.667 0.00 0.00 46.44 2.67
46 47 4.214545 TGCTTTTCGTAACCATCAACGATT 59.785 37.500 0.00 0.00 46.44 3.34
47 48 3.749088 TGCTTTTCGTAACCATCAACGAT 59.251 39.130 0.00 0.00 46.44 3.73
48 49 3.132160 TGCTTTTCGTAACCATCAACGA 58.868 40.909 0.00 0.00 45.64 3.85
49 50 3.529634 TGCTTTTCGTAACCATCAACG 57.470 42.857 0.00 0.00 40.40 4.10
50 51 3.662186 CGTTGCTTTTCGTAACCATCAAC 59.338 43.478 0.00 0.00 35.12 3.18
51 52 3.850374 GCGTTGCTTTTCGTAACCATCAA 60.850 43.478 0.00 0.00 35.12 2.57
52 53 2.350007 GCGTTGCTTTTCGTAACCATCA 60.350 45.455 0.00 0.00 35.12 3.07
53 54 2.095919 AGCGTTGCTTTTCGTAACCATC 60.096 45.455 0.00 0.00 33.89 3.51
54 55 1.877443 AGCGTTGCTTTTCGTAACCAT 59.123 42.857 0.00 0.00 33.89 3.55
55 56 1.262151 GAGCGTTGCTTTTCGTAACCA 59.738 47.619 0.00 0.00 39.88 3.67
56 57 1.720547 CGAGCGTTGCTTTTCGTAACC 60.721 52.381 0.00 0.00 39.88 2.85
57 58 1.071041 ACGAGCGTTGCTTTTCGTAAC 60.071 47.619 3.23 0.00 39.88 2.50
58 59 1.210870 ACGAGCGTTGCTTTTCGTAA 58.789 45.000 3.23 0.00 39.88 3.18
59 60 1.980844 CTACGAGCGTTGCTTTTCGTA 59.019 47.619 0.00 10.12 39.88 3.43
60 61 0.782384 CTACGAGCGTTGCTTTTCGT 59.218 50.000 0.00 9.07 39.88 3.85
61 62 0.093026 CCTACGAGCGTTGCTTTTCG 59.907 55.000 0.00 0.00 39.88 3.46
62 63 1.126296 GACCTACGAGCGTTGCTTTTC 59.874 52.381 0.00 0.00 39.88 2.29
63 64 1.145803 GACCTACGAGCGTTGCTTTT 58.854 50.000 0.00 0.00 39.88 2.27
64 65 0.032952 TGACCTACGAGCGTTGCTTT 59.967 50.000 0.00 0.00 39.88 3.51
65 66 0.032952 TTGACCTACGAGCGTTGCTT 59.967 50.000 0.00 0.00 39.88 3.91
66 67 0.032952 TTTGACCTACGAGCGTTGCT 59.967 50.000 0.00 0.00 43.88 3.91
67 68 1.076332 ATTTGACCTACGAGCGTTGC 58.924 50.000 0.00 0.00 0.00 4.17
68 69 2.093783 GGAATTTGACCTACGAGCGTTG 59.906 50.000 0.00 0.00 0.00 4.10
69 70 2.028385 AGGAATTTGACCTACGAGCGTT 60.028 45.455 0.00 0.00 35.84 4.84
70 71 1.549170 AGGAATTTGACCTACGAGCGT 59.451 47.619 0.00 0.00 35.84 5.07
71 72 2.159226 AGAGGAATTTGACCTACGAGCG 60.159 50.000 0.00 0.00 37.93 5.03
72 73 3.528597 AGAGGAATTTGACCTACGAGC 57.471 47.619 0.00 0.00 37.93 5.03
73 74 4.822026 ACAAGAGGAATTTGACCTACGAG 58.178 43.478 0.00 0.00 37.93 4.18
74 75 4.884668 ACAAGAGGAATTTGACCTACGA 57.115 40.909 0.00 0.00 37.93 3.43
75 76 5.238650 ACAAACAAGAGGAATTTGACCTACG 59.761 40.000 3.13 0.00 37.93 3.51
76 77 6.438763 CACAAACAAGAGGAATTTGACCTAC 58.561 40.000 3.13 0.00 37.93 3.18
77 78 5.009610 GCACAAACAAGAGGAATTTGACCTA 59.990 40.000 3.13 0.00 37.93 3.08
78 79 4.202151 GCACAAACAAGAGGAATTTGACCT 60.202 41.667 3.13 0.00 40.80 3.85
79 80 4.051237 GCACAAACAAGAGGAATTTGACC 58.949 43.478 3.13 0.00 36.91 4.02
80 81 4.936891 AGCACAAACAAGAGGAATTTGAC 58.063 39.130 3.13 0.00 36.91 3.18
81 82 4.644234 TGAGCACAAACAAGAGGAATTTGA 59.356 37.500 3.13 0.00 36.91 2.69
82 83 4.935702 TGAGCACAAACAAGAGGAATTTG 58.064 39.130 0.00 0.00 38.89 2.32
83 84 5.279156 GGATGAGCACAAACAAGAGGAATTT 60.279 40.000 0.00 0.00 0.00 1.82
84 85 4.219288 GGATGAGCACAAACAAGAGGAATT 59.781 41.667 0.00 0.00 0.00 2.17
85 86 3.760684 GGATGAGCACAAACAAGAGGAAT 59.239 43.478 0.00 0.00 0.00 3.01
86 87 3.149196 GGATGAGCACAAACAAGAGGAA 58.851 45.455 0.00 0.00 0.00 3.36
87 88 2.553028 GGGATGAGCACAAACAAGAGGA 60.553 50.000 0.00 0.00 0.00 3.71
88 89 1.815003 GGGATGAGCACAAACAAGAGG 59.185 52.381 0.00 0.00 0.00 3.69
89 90 2.227388 GTGGGATGAGCACAAACAAGAG 59.773 50.000 0.00 0.00 0.00 2.85
90 91 2.229792 GTGGGATGAGCACAAACAAGA 58.770 47.619 0.00 0.00 0.00 3.02
91 92 1.955778 TGTGGGATGAGCACAAACAAG 59.044 47.619 0.00 0.00 0.00 3.16
92 93 1.680735 GTGTGGGATGAGCACAAACAA 59.319 47.619 0.00 0.00 38.09 2.83
93 94 1.317613 GTGTGGGATGAGCACAAACA 58.682 50.000 0.00 0.00 38.09 2.83
94 95 1.001378 GTGTGTGGGATGAGCACAAAC 60.001 52.381 0.00 0.00 43.51 2.93
95 96 1.317613 GTGTGTGGGATGAGCACAAA 58.682 50.000 0.00 0.00 43.51 2.83
96 97 0.182299 TGTGTGTGGGATGAGCACAA 59.818 50.000 0.00 0.00 43.51 3.33
97 98 0.250424 CTGTGTGTGGGATGAGCACA 60.250 55.000 0.00 0.00 40.32 4.57
98 99 0.035317 TCTGTGTGTGGGATGAGCAC 59.965 55.000 0.00 0.00 0.00 4.40
99 100 0.035317 GTCTGTGTGTGGGATGAGCA 59.965 55.000 0.00 0.00 0.00 4.26
100 101 0.035317 TGTCTGTGTGTGGGATGAGC 59.965 55.000 0.00 0.00 0.00 4.26
101 102 1.609061 GGTGTCTGTGTGTGGGATGAG 60.609 57.143 0.00 0.00 0.00 2.90
102 103 0.396435 GGTGTCTGTGTGTGGGATGA 59.604 55.000 0.00 0.00 0.00 2.92
103 104 0.108396 TGGTGTCTGTGTGTGGGATG 59.892 55.000 0.00 0.00 0.00 3.51
104 105 0.108585 GTGGTGTCTGTGTGTGGGAT 59.891 55.000 0.00 0.00 0.00 3.85
105 106 1.524961 GTGGTGTCTGTGTGTGGGA 59.475 57.895 0.00 0.00 0.00 4.37
106 107 1.525995 GGTGGTGTCTGTGTGTGGG 60.526 63.158 0.00 0.00 0.00 4.61
107 108 1.525995 GGGTGGTGTCTGTGTGTGG 60.526 63.158 0.00 0.00 0.00 4.17
108 109 1.525995 GGGGTGGTGTCTGTGTGTG 60.526 63.158 0.00 0.00 0.00 3.82
109 110 1.998438 TGGGGTGGTGTCTGTGTGT 60.998 57.895 0.00 0.00 0.00 3.72
110 111 1.525995 GTGGGGTGGTGTCTGTGTG 60.526 63.158 0.00 0.00 0.00 3.82
111 112 1.983119 CTGTGGGGTGGTGTCTGTGT 61.983 60.000 0.00 0.00 0.00 3.72
112 113 1.227943 CTGTGGGGTGGTGTCTGTG 60.228 63.158 0.00 0.00 0.00 3.66
113 114 3.120086 GCTGTGGGGTGGTGTCTGT 62.120 63.158 0.00 0.00 0.00 3.41
114 115 2.281761 GCTGTGGGGTGGTGTCTG 60.282 66.667 0.00 0.00 0.00 3.51
115 116 2.448542 AGCTGTGGGGTGGTGTCT 60.449 61.111 0.00 0.00 0.00 3.41
116 117 1.764571 TACAGCTGTGGGGTGGTGTC 61.765 60.000 29.57 0.00 46.60 3.67
117 118 1.349542 TTACAGCTGTGGGGTGGTGT 61.350 55.000 29.57 0.97 46.60 4.16
118 119 0.179004 TTTACAGCTGTGGGGTGGTG 60.179 55.000 29.57 0.00 46.60 4.17
119 120 0.553819 TTTTACAGCTGTGGGGTGGT 59.446 50.000 29.57 1.61 46.60 4.16
120 121 1.247567 CTTTTACAGCTGTGGGGTGG 58.752 55.000 29.57 10.31 46.60 4.61
122 123 2.092103 TGAACTTTTACAGCTGTGGGGT 60.092 45.455 29.57 17.99 0.00 4.95
123 124 2.582052 TGAACTTTTACAGCTGTGGGG 58.418 47.619 29.57 17.38 0.00 4.96
124 125 3.820467 TGATGAACTTTTACAGCTGTGGG 59.180 43.478 29.57 17.06 0.00 4.61
125 126 5.009010 AGTTGATGAACTTTTACAGCTGTGG 59.991 40.000 29.57 17.39 39.56 4.17
126 127 6.064846 AGTTGATGAACTTTTACAGCTGTG 57.935 37.500 29.57 14.82 39.56 3.66
127 128 7.801716 TTAGTTGATGAACTTTTACAGCTGT 57.198 32.000 25.12 25.12 39.56 4.40
128 129 7.752239 CCATTAGTTGATGAACTTTTACAGCTG 59.248 37.037 13.48 13.48 39.56 4.24
129 130 7.575720 GCCATTAGTTGATGAACTTTTACAGCT 60.576 37.037 1.98 0.00 39.56 4.24
130 131 6.528072 GCCATTAGTTGATGAACTTTTACAGC 59.472 38.462 1.98 0.00 39.56 4.40
131 132 7.029563 GGCCATTAGTTGATGAACTTTTACAG 58.970 38.462 1.98 0.00 39.56 2.74
132 133 6.719370 AGGCCATTAGTTGATGAACTTTTACA 59.281 34.615 5.01 0.00 39.56 2.41
133 134 7.158099 AGGCCATTAGTTGATGAACTTTTAC 57.842 36.000 5.01 0.00 39.56 2.01
134 135 7.775053 AAGGCCATTAGTTGATGAACTTTTA 57.225 32.000 5.01 0.00 39.56 1.52
135 136 6.670695 AAGGCCATTAGTTGATGAACTTTT 57.329 33.333 5.01 0.00 39.56 2.27
136 137 6.378280 CCTAAGGCCATTAGTTGATGAACTTT 59.622 38.462 5.01 0.00 39.56 2.66
137 138 5.888161 CCTAAGGCCATTAGTTGATGAACTT 59.112 40.000 5.01 0.00 39.56 2.66
138 139 5.044846 ACCTAAGGCCATTAGTTGATGAACT 60.045 40.000 5.01 2.35 44.90 3.01
139 140 5.193679 ACCTAAGGCCATTAGTTGATGAAC 58.806 41.667 5.01 0.00 39.50 3.18
140 141 5.450818 ACCTAAGGCCATTAGTTGATGAA 57.549 39.130 5.01 0.00 39.50 2.57
141 142 5.427157 TGTACCTAAGGCCATTAGTTGATGA 59.573 40.000 5.01 0.00 39.50 2.92
142 143 5.527582 GTGTACCTAAGGCCATTAGTTGATG 59.472 44.000 5.01 0.32 39.50 3.07
143 144 5.190925 TGTGTACCTAAGGCCATTAGTTGAT 59.809 40.000 5.01 0.00 39.50 2.57
144 145 4.532916 TGTGTACCTAAGGCCATTAGTTGA 59.467 41.667 5.01 0.00 39.50 3.18
145 146 4.839121 TGTGTACCTAAGGCCATTAGTTG 58.161 43.478 5.01 1.66 39.50 3.16
146 147 5.681639 GATGTGTACCTAAGGCCATTAGTT 58.318 41.667 5.01 1.38 39.50 2.24
147 148 4.202223 CGATGTGTACCTAAGGCCATTAGT 60.202 45.833 5.01 0.00 39.50 2.24
148 149 4.038763 TCGATGTGTACCTAAGGCCATTAG 59.961 45.833 5.01 10.08 40.63 1.73
149 150 3.962063 TCGATGTGTACCTAAGGCCATTA 59.038 43.478 5.01 0.00 0.00 1.90
150 151 2.769663 TCGATGTGTACCTAAGGCCATT 59.230 45.455 5.01 0.00 0.00 3.16
151 152 2.394632 TCGATGTGTACCTAAGGCCAT 58.605 47.619 5.01 0.00 0.00 4.40
152 153 1.855295 TCGATGTGTACCTAAGGCCA 58.145 50.000 5.01 0.00 0.00 5.36
153 154 2.102588 ACATCGATGTGTACCTAAGGCC 59.897 50.000 29.49 0.00 40.03 5.19
154 155 3.381949 GACATCGATGTGTACCTAAGGC 58.618 50.000 34.48 12.76 41.95 4.35
155 156 3.066342 ACGACATCGATGTGTACCTAAGG 59.934 47.826 34.48 13.70 41.95 2.69
156 157 4.288670 ACGACATCGATGTGTACCTAAG 57.711 45.455 34.48 16.16 41.95 2.18
157 158 4.417506 CAACGACATCGATGTGTACCTAA 58.582 43.478 34.48 0.00 41.95 2.69
158 159 3.732774 GCAACGACATCGATGTGTACCTA 60.733 47.826 34.48 0.00 42.86 3.08
159 160 2.876091 CAACGACATCGATGTGTACCT 58.124 47.619 34.48 14.74 41.95 3.08
160 161 1.323534 GCAACGACATCGATGTGTACC 59.676 52.381 34.48 18.85 42.86 3.34
161 162 1.323534 GGCAACGACATCGATGTGTAC 59.676 52.381 34.48 23.09 42.86 2.90
162 163 1.635844 GGCAACGACATCGATGTGTA 58.364 50.000 34.48 0.00 42.86 2.90
163 164 2.456000 GGCAACGACATCGATGTGT 58.544 52.632 34.48 26.34 42.86 3.72
176 177 4.038080 CCGAAGCAACCCGGCAAC 62.038 66.667 0.00 0.00 39.22 4.17
177 178 4.257654 TCCGAAGCAACCCGGCAA 62.258 61.111 0.00 0.00 44.96 4.52
180 181 3.546714 AAGGTCCGAAGCAACCCGG 62.547 63.158 0.00 0.00 46.57 5.73
181 182 2.032071 AAGGTCCGAAGCAACCCG 59.968 61.111 0.00 0.00 36.11 5.28
182 183 1.971695 CCAAGGTCCGAAGCAACCC 60.972 63.158 0.00 0.00 36.11 4.11
183 184 0.322546 ATCCAAGGTCCGAAGCAACC 60.323 55.000 0.00 0.00 35.69 3.77
184 185 0.804989 CATCCAAGGTCCGAAGCAAC 59.195 55.000 0.00 0.00 0.00 4.17
185 186 0.690192 TCATCCAAGGTCCGAAGCAA 59.310 50.000 0.00 0.00 0.00 3.91
186 187 0.250234 CTCATCCAAGGTCCGAAGCA 59.750 55.000 0.00 0.00 0.00 3.91
187 188 1.092345 GCTCATCCAAGGTCCGAAGC 61.092 60.000 0.00 0.00 0.00 3.86
188 189 0.250234 TGCTCATCCAAGGTCCGAAG 59.750 55.000 0.00 0.00 0.00 3.79
189 190 0.036388 GTGCTCATCCAAGGTCCGAA 60.036 55.000 0.00 0.00 0.00 4.30
190 191 0.904865 AGTGCTCATCCAAGGTCCGA 60.905 55.000 0.00 0.00 0.00 4.55
191 192 0.742281 CAGTGCTCATCCAAGGTCCG 60.742 60.000 0.00 0.00 0.00 4.79
192 193 0.393537 CCAGTGCTCATCCAAGGTCC 60.394 60.000 0.00 0.00 0.00 4.46
193 194 1.028868 GCCAGTGCTCATCCAAGGTC 61.029 60.000 0.00 0.00 33.53 3.85
194 195 1.001641 GCCAGTGCTCATCCAAGGT 60.002 57.895 0.00 0.00 33.53 3.50
195 196 0.395311 ATGCCAGTGCTCATCCAAGG 60.395 55.000 0.00 0.00 38.71 3.61
196 197 1.022735 GATGCCAGTGCTCATCCAAG 58.977 55.000 10.71 0.00 38.71 3.61
197 198 0.328926 TGATGCCAGTGCTCATCCAA 59.671 50.000 16.21 2.16 38.57 3.53
198 199 0.549469 ATGATGCCAGTGCTCATCCA 59.451 50.000 16.21 8.55 38.57 3.41
199 200 2.556144 TATGATGCCAGTGCTCATCC 57.444 50.000 16.21 4.67 38.57 3.51
200 201 4.070009 TCATTATGATGCCAGTGCTCATC 58.930 43.478 13.53 13.53 36.96 2.92
201 202 4.094830 TCATTATGATGCCAGTGCTCAT 57.905 40.909 0.00 6.39 38.26 2.90
202 203 3.564053 TCATTATGATGCCAGTGCTCA 57.436 42.857 0.00 0.00 38.71 4.26
203 204 3.628942 TGTTCATTATGATGCCAGTGCTC 59.371 43.478 0.00 0.00 38.71 4.26
204 205 3.623703 TGTTCATTATGATGCCAGTGCT 58.376 40.909 0.00 0.00 38.71 4.40
205 206 4.579454 ATGTTCATTATGATGCCAGTGC 57.421 40.909 0.00 0.00 33.14 4.40
206 207 6.294342 CCCTTATGTTCATTATGATGCCAGTG 60.294 42.308 0.00 0.00 33.14 3.66
207 208 5.771666 CCCTTATGTTCATTATGATGCCAGT 59.228 40.000 0.00 0.00 33.14 4.00
208 209 5.336213 GCCCTTATGTTCATTATGATGCCAG 60.336 44.000 0.00 0.00 33.14 4.85
209 210 4.523943 GCCCTTATGTTCATTATGATGCCA 59.476 41.667 0.00 0.00 33.14 4.92
210 211 4.379813 CGCCCTTATGTTCATTATGATGCC 60.380 45.833 0.00 0.00 33.14 4.40
211 212 4.455533 TCGCCCTTATGTTCATTATGATGC 59.544 41.667 0.00 0.00 33.14 3.91
212 213 6.558771 TTCGCCCTTATGTTCATTATGATG 57.441 37.500 0.00 0.00 34.46 3.07
213 214 7.361201 CGAATTCGCCCTTATGTTCATTATGAT 60.361 37.037 15.93 0.00 0.00 2.45
214 215 6.073276 CGAATTCGCCCTTATGTTCATTATGA 60.073 38.462 15.93 0.00 0.00 2.15
215 216 6.079763 CGAATTCGCCCTTATGTTCATTATG 58.920 40.000 15.93 0.00 0.00 1.90
216 217 6.241207 CGAATTCGCCCTTATGTTCATTAT 57.759 37.500 15.93 0.00 0.00 1.28
217 218 5.666969 CGAATTCGCCCTTATGTTCATTA 57.333 39.130 15.93 0.00 0.00 1.90
218 219 4.552166 CGAATTCGCCCTTATGTTCATT 57.448 40.909 15.93 0.00 0.00 2.57
457 458 1.500512 TTCGCGGCCGCATAATTACC 61.501 55.000 45.26 16.94 42.06 2.85
458 459 0.515564 ATTCGCGGCCGCATAATTAC 59.484 50.000 45.26 17.70 42.06 1.89
459 460 1.195900 GAATTCGCGGCCGCATAATTA 59.804 47.619 39.06 24.93 42.06 1.40
460 461 0.040425 GAATTCGCGGCCGCATAATT 60.040 50.000 39.41 39.41 42.06 1.40
461 462 1.574428 GAATTCGCGGCCGCATAAT 59.426 52.632 45.26 37.56 42.06 1.28
462 463 2.876879 CGAATTCGCGGCCGCATAA 61.877 57.895 45.26 37.16 42.06 1.90
463 464 3.334751 CGAATTCGCGGCCGCATA 61.335 61.111 45.26 33.42 42.06 3.14
473 474 7.653767 ACTAGATAAATTAAGGGCGAATTCG 57.346 36.000 23.34 23.34 43.27 3.34
474 475 8.933807 GGTACTAGATAAATTAAGGGCGAATTC 58.066 37.037 0.00 0.00 0.00 2.17
475 476 8.657712 AGGTACTAGATAAATTAAGGGCGAATT 58.342 33.333 0.00 0.00 36.02 2.17
476 477 8.203681 AGGTACTAGATAAATTAAGGGCGAAT 57.796 34.615 0.00 0.00 36.02 3.34
477 478 7.522725 CGAGGTACTAGATAAATTAAGGGCGAA 60.523 40.741 0.00 0.00 41.55 4.70
478 479 6.072286 CGAGGTACTAGATAAATTAAGGGCGA 60.072 42.308 0.00 0.00 41.55 5.54
479 480 6.091437 CGAGGTACTAGATAAATTAAGGGCG 58.909 44.000 0.00 0.00 41.55 6.13
480 481 5.868258 GCGAGGTACTAGATAAATTAAGGGC 59.132 44.000 0.00 0.00 41.55 5.19
481 482 6.396450 GGCGAGGTACTAGATAAATTAAGGG 58.604 44.000 0.00 0.00 41.55 3.95
482 483 6.091437 CGGCGAGGTACTAGATAAATTAAGG 58.909 44.000 0.00 0.00 41.55 2.69
483 484 6.581542 CACGGCGAGGTACTAGATAAATTAAG 59.418 42.308 16.62 0.00 41.55 1.85
484 485 6.039717 ACACGGCGAGGTACTAGATAAATTAA 59.960 38.462 16.62 0.00 41.55 1.40
485 486 5.532406 ACACGGCGAGGTACTAGATAAATTA 59.468 40.000 16.62 0.00 41.55 1.40
486 487 4.340381 ACACGGCGAGGTACTAGATAAATT 59.660 41.667 16.62 0.00 41.55 1.82
487 488 3.887716 ACACGGCGAGGTACTAGATAAAT 59.112 43.478 16.62 0.00 41.55 1.40
488 489 3.282021 ACACGGCGAGGTACTAGATAAA 58.718 45.455 16.62 0.00 41.55 1.40
489 490 2.923121 ACACGGCGAGGTACTAGATAA 58.077 47.619 16.62 0.00 41.55 1.75
490 491 2.615447 CAACACGGCGAGGTACTAGATA 59.385 50.000 16.62 0.00 41.55 1.98
491 492 1.404391 CAACACGGCGAGGTACTAGAT 59.596 52.381 16.62 0.00 41.55 1.98
492 493 0.806868 CAACACGGCGAGGTACTAGA 59.193 55.000 16.62 0.00 41.55 2.43
493 494 0.801067 GCAACACGGCGAGGTACTAG 60.801 60.000 16.62 0.00 41.55 2.57
494 495 1.213537 GCAACACGGCGAGGTACTA 59.786 57.895 16.62 0.00 41.55 1.82
496 497 0.179119 ATAGCAACACGGCGAGGTAC 60.179 55.000 16.62 0.00 39.27 3.34
500 501 1.004610 CATTGATAGCAACACGGCGAG 60.005 52.381 16.62 8.85 36.72 5.03
592 593 1.209504 CCCCCGAGATAAACAGCTCAA 59.790 52.381 0.00 0.00 0.00 3.02
658 673 3.877508 AGAACAAGCAGTCTGGTGTTTAC 59.122 43.478 5.07 2.63 0.00 2.01
666 681 1.458827 GAAGCGAGAACAAGCAGTCTG 59.541 52.381 0.00 0.00 35.48 3.51
793 834 1.450531 AAACAGTCACTGCTGCAGCC 61.451 55.000 34.64 19.29 39.96 4.85
803 844 6.541111 AGAAACGATAAAGGAAACAGTCAC 57.459 37.500 0.00 0.00 0.00 3.67
813 854 5.371115 TTTCCTGCAAGAAACGATAAAGG 57.629 39.130 6.38 0.00 34.07 3.11
888 929 2.941720 CAGGCTTCCTTAATCAGCTGAC 59.058 50.000 20.97 2.26 33.76 3.51
890 931 2.295885 CCAGGCTTCCTTAATCAGCTG 58.704 52.381 7.63 7.63 33.76 4.24
963 1007 0.691413 CCCCTCCTCCTCCTTACACC 60.691 65.000 0.00 0.00 0.00 4.16
1049 1093 4.554036 GATCCAGCAGGGGCCGAC 62.554 72.222 0.00 0.00 42.56 4.79
1129 1176 0.401356 TCCTCATTGCCAACAGAGCA 59.599 50.000 3.79 0.00 38.81 4.26
1152 1199 1.134694 GGGATGAAAACGCTCGTGC 59.865 57.895 0.00 0.00 0.00 5.34
1154 1201 1.005394 ACGGGATGAAAACGCTCGT 60.005 52.632 0.00 0.00 0.00 4.18
1207 1254 2.224137 CGAAGCTGATCTTCCTGGCATA 60.224 50.000 0.00 0.00 46.60 3.14
1228 1275 0.618458 TACAGCCTGACACAATCCCC 59.382 55.000 0.00 0.00 0.00 4.81
1233 1280 0.322456 GCCCATACAGCCTGACACAA 60.322 55.000 0.00 0.00 0.00 3.33
1317 1364 1.191489 TCTGAATCAGGCACCGGACA 61.191 55.000 9.46 0.00 31.51 4.02
1515 1562 0.179018 ACACCTGCAACTCAACTCCC 60.179 55.000 0.00 0.00 0.00 4.30
1548 1595 2.629656 CCCCTCAACCAAGCGCTTG 61.630 63.158 37.33 37.33 40.13 4.01
1778 1825 2.233271 CAGACTTCACCTGTTTGGCAT 58.767 47.619 0.00 0.00 40.22 4.40
1794 1841 2.783135 TGAAGGAAGTTCCATGCAGAC 58.217 47.619 23.87 7.21 39.61 3.51
1847 1894 9.577110 CATGAATAACTGCATTGAAACAATAGT 57.423 29.630 0.00 0.00 0.00 2.12
2268 2315 8.651588 GCATATATCAGACTGCTGTAATTGTAC 58.348 37.037 0.00 0.00 42.84 2.90
2533 2580 2.290641 TGTCTGCGAAAATACCCCACAT 60.291 45.455 0.00 0.00 0.00 3.21
2589 2636 7.229306 ACAAAACCATCGATGATAATGCTGTAT 59.771 33.333 26.86 3.76 0.00 2.29
2595 2642 7.043854 GCTTTCACAAAACCATCGATGATAATG 60.044 37.037 26.86 19.80 0.00 1.90
2601 2648 4.164822 AGCTTTCACAAAACCATCGATG 57.835 40.909 18.76 18.76 0.00 3.84
2994 3041 9.287373 AGATCTGTATAAGTTACTACTGTAGGC 57.713 37.037 18.38 8.57 34.01 3.93
3144 3191 4.951715 TCCTGAGAATCACCAAAATCATGG 59.048 41.667 0.00 0.00 42.56 3.66
3145 3192 6.376299 TCTTCCTGAGAATCACCAAAATCATG 59.624 38.462 0.00 0.00 42.56 3.07
3215 3262 2.862541 TGGAATGGTTCTGTTGACCAG 58.137 47.619 2.22 0.00 42.97 4.00
3228 3275 2.167075 GCAAAGGGAACAGATGGAATGG 59.833 50.000 0.00 0.00 0.00 3.16
3229 3276 3.094572 AGCAAAGGGAACAGATGGAATG 58.905 45.455 0.00 0.00 0.00 2.67
3230 3277 3.463048 AGCAAAGGGAACAGATGGAAT 57.537 42.857 0.00 0.00 0.00 3.01
3255 3351 3.191078 CCCTTGTTCAAACAATGGCAA 57.809 42.857 14.36 0.00 46.71 4.52
3262 3361 3.053245 TCTTTCCCTCCCTTGTTCAAACA 60.053 43.478 0.00 0.00 37.08 2.83
3296 3395 3.120199 CGCTCCATCGTCAAAGTGAAAAT 60.120 43.478 0.00 0.00 0.00 1.82
3309 3408 4.899239 GGGCAGACCGCTCCATCG 62.899 72.222 0.00 0.00 41.91 3.84
3315 3414 3.699894 CTGTGAGGGCAGACCGCT 61.700 66.667 0.00 0.00 46.96 5.52
3316 3415 1.676678 TATCTGTGAGGGCAGACCGC 61.677 60.000 0.00 0.00 46.72 5.68
3317 3416 1.043816 ATATCTGTGAGGGCAGACCG 58.956 55.000 0.00 0.00 46.72 4.79
3318 3417 2.435805 TGAATATCTGTGAGGGCAGACC 59.564 50.000 0.00 0.00 46.72 3.85
3319 3418 3.827008 TGAATATCTGTGAGGGCAGAC 57.173 47.619 0.00 0.00 46.72 3.51
3321 3420 4.999950 GGTATTGAATATCTGTGAGGGCAG 59.000 45.833 0.00 0.00 37.81 4.85
3322 3421 4.660303 AGGTATTGAATATCTGTGAGGGCA 59.340 41.667 0.00 0.00 0.00 5.36
3323 3422 4.999950 CAGGTATTGAATATCTGTGAGGGC 59.000 45.833 15.60 0.00 38.80 5.19
3324 3423 5.307976 TCCAGGTATTGAATATCTGTGAGGG 59.692 44.000 20.59 8.20 41.39 4.30
3325 3424 6.226787 GTCCAGGTATTGAATATCTGTGAGG 58.773 44.000 20.59 8.51 41.39 3.86
3326 3425 5.923114 CGTCCAGGTATTGAATATCTGTGAG 59.077 44.000 20.59 8.71 41.39 3.51
3327 3426 5.221441 CCGTCCAGGTATTGAATATCTGTGA 60.221 44.000 20.59 15.22 41.39 3.58
3328 3427 4.991056 CCGTCCAGGTATTGAATATCTGTG 59.009 45.833 20.59 13.56 41.39 3.66
3329 3428 5.215252 CCGTCCAGGTATTGAATATCTGT 57.785 43.478 20.59 0.00 41.39 3.41
3349 3448 8.573885 TCTAACCTGTAATTATCTATCACACCG 58.426 37.037 0.00 0.00 0.00 4.94
3431 3614 7.762615 AGATAAATCCAACTCAAAATGTGCATG 59.237 33.333 0.00 0.00 0.00 4.06
3602 3786 8.823818 CAATATCTAGCATGCGATGAATTGATA 58.176 33.333 22.60 15.83 0.00 2.15
3686 3882 7.327761 GGCAGCTTACATCATGCATATTTTAAG 59.672 37.037 0.00 5.98 40.46 1.85
3907 4104 6.211184 TGCACCCTGAAATCATTTCACTTTAT 59.789 34.615 8.85 0.00 44.21 1.40
3980 4178 5.403766 CGCAGTTAAAGAGCTATATGACTGG 59.596 44.000 15.34 6.23 35.15 4.00
3988 4186 5.302059 TCTGTATCCGCAGTTAAAGAGCTAT 59.698 40.000 0.00 0.00 37.70 2.97
4010 4208 6.655078 ACCTGCACAATAACTGAATTTTCT 57.345 33.333 0.00 0.00 0.00 2.52
4015 4213 5.769662 TCTGAAACCTGCACAATAACTGAAT 59.230 36.000 0.00 0.00 0.00 2.57
4024 4222 3.286353 TCACATTCTGAAACCTGCACAA 58.714 40.909 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.