Multiple sequence alignment - TraesCS3B01G014800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G014800 chr3B 100.000 4026 0 0 1 4026 6238645 6242670 0.000000e+00 7435.0
1 TraesCS3B01G014800 chr3B 82.038 785 120 14 2284 3066 6639142 6638377 0.000000e+00 649.0
2 TraesCS3B01G014800 chr3B 100.000 45 0 0 2282 2326 6240884 6240928 2.580000e-12 84.2
3 TraesCS3B01G014800 chr3B 100.000 45 0 0 2240 2284 6240926 6240970 2.580000e-12 84.2
4 TraesCS3B01G014800 chrUn 100.000 2034 0 0 1 2034 319253170 319251137 0.000000e+00 3757.0
5 TraesCS3B01G014800 chrUn 100.000 2034 0 0 1 2034 331253995 331256028 0.000000e+00 3757.0
6 TraesCS3B01G014800 chrUn 100.000 500 0 0 3527 4026 470664255 470664754 0.000000e+00 924.0
7 TraesCS3B01G014800 chrUn 84.597 409 63 0 2284 2692 293072797 293073205 1.350000e-109 407.0
8 TraesCS3B01G014800 chr3D 95.183 1723 69 8 1 1712 3977771 3979490 0.000000e+00 2710.0
9 TraesCS3B01G014800 chr3D 95.525 961 43 0 2282 3242 3980111 3981071 0.000000e+00 1537.0
10 TraesCS3B01G014800 chr3D 94.249 539 29 2 1748 2284 3979617 3980155 0.000000e+00 822.0
11 TraesCS3B01G014800 chr3D 91.078 269 23 1 3246 3513 106313457 106313189 2.960000e-96 363.0
12 TraesCS3B01G014800 chr3D 89.338 272 28 1 3242 3513 607669439 607669709 1.390000e-89 340.0
13 TraesCS3B01G014800 chr3D 88.768 276 29 2 3242 3515 438301716 438301991 1.790000e-88 337.0
14 TraesCS3B01G014800 chr3D 88.686 274 29 1 3242 3513 535196797 535197070 2.320000e-87 333.0
15 TraesCS3B01G014800 chr3D 96.748 123 4 0 1923 2045 3979493 3979615 5.270000e-49 206.0
16 TraesCS3B01G014800 chr3D 74.394 289 52 16 1215 1493 591550163 591550439 1.980000e-18 104.0
17 TraesCS3B01G014800 chr6A 85.468 523 54 9 3505 4025 286238202 286237700 3.560000e-145 525.0
18 TraesCS3B01G014800 chr7B 86.463 458 49 10 3579 4025 666853034 666852579 1.300000e-134 490.0
19 TraesCS3B01G014800 chr7B 83.047 407 39 15 3579 3974 666892473 666892086 3.850000e-90 342.0
20 TraesCS3B01G014800 chr7B 91.057 123 10 1 3600 3722 13051958 13052079 8.950000e-37 165.0
21 TraesCS3B01G014800 chr2D 91.544 272 21 2 3242 3513 44372339 44372608 1.370000e-99 374.0
22 TraesCS3B01G014800 chr4D 90.244 287 23 4 3242 3523 500586716 500586430 1.770000e-98 370.0
23 TraesCS3B01G014800 chr4D 80.247 162 29 3 1354 1513 499405397 499405237 7.070000e-23 119.0
24 TraesCS3B01G014800 chr5D 88.693 283 26 4 3242 3519 59202021 59201740 1.390000e-89 340.0
25 TraesCS3B01G014800 chr5D 81.119 286 43 8 1218 1493 414124612 414124328 6.770000e-53 219.0
26 TraesCS3B01G014800 chr1D 88.448 277 31 1 3238 3513 268123019 268123295 2.320000e-87 333.0
27 TraesCS3B01G014800 chr1D 82.237 152 18 6 1351 1493 71032588 71032739 5.460000e-24 122.0
28 TraesCS3B01G014800 chr6B 88.278 273 31 1 3242 3513 45504769 45504497 3.880000e-85 326.0
29 TraesCS3B01G014800 chr2B 89.691 194 19 1 3511 3704 310495376 310495184 3.110000e-61 246.0
30 TraesCS3B01G014800 chr2B 79.191 173 20 8 1335 1493 551450711 551450881 5.500000e-19 106.0
31 TraesCS3B01G014800 chr4A 76.821 302 42 17 1218 1496 424362515 424362219 1.170000e-30 145.0
32 TraesCS3B01G014800 chr7A 78.409 176 24 9 1335 1496 222386102 222385927 7.120000e-18 102.0
33 TraesCS3B01G014800 chr7A 76.970 165 30 7 1335 1493 13624962 13625124 1.990000e-13 87.9
34 TraesCS3B01G014800 chr7D 78.882 161 25 7 1335 1493 575482078 575482231 2.560000e-17 100.0
35 TraesCS3B01G014800 chr2A 92.308 39 1 2 1211 1248 671947091 671947128 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G014800 chr3B 6238645 6242670 4025 False 2534.466667 7435 100.00000 1 4026 3 chr3B.!!$F1 4025
1 TraesCS3B01G014800 chr3B 6638377 6639142 765 True 649.000000 649 82.03800 2284 3066 1 chr3B.!!$R1 782
2 TraesCS3B01G014800 chrUn 319251137 319253170 2033 True 3757.000000 3757 100.00000 1 2034 1 chrUn.!!$R1 2033
3 TraesCS3B01G014800 chrUn 331253995 331256028 2033 False 3757.000000 3757 100.00000 1 2034 1 chrUn.!!$F2 2033
4 TraesCS3B01G014800 chr3D 3977771 3981071 3300 False 1318.750000 2710 95.42625 1 3242 4 chr3D.!!$F5 3241
5 TraesCS3B01G014800 chr6A 286237700 286238202 502 True 525.000000 525 85.46800 3505 4025 1 chr6A.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2203 7.813148 GGCGCTCTTGTTATTATGTCTTATCTA 59.187 37.037 7.64 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3795 3900 0.035056 GTTGGTAGGCTGGTGCATCT 60.035 55.0 0.0 0.0 41.91 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2098 2203 7.813148 GGCGCTCTTGTTATTATGTCTTATCTA 59.187 37.037 7.64 0.00 0.00 1.98
2134 2239 3.156157 CCTGAGCTTTCTCTGGCTG 57.844 57.895 5.50 0.00 46.71 4.85
2138 2243 2.753446 GCTTTCTCTGGCTGGCCC 60.753 66.667 9.28 0.00 34.56 5.80
2167 2272 3.559597 CCACCATGGCCATTGTTTTCATT 60.560 43.478 19.47 0.00 0.00 2.57
2168 2273 3.437395 CACCATGGCCATTGTTTTCATTG 59.563 43.478 19.47 4.18 0.00 2.82
2203 2308 6.649973 ACATCAAGCTCAATCATCATACTAGC 59.350 38.462 0.00 0.00 0.00 3.42
2229 2334 7.470147 CGATAGCTATGGAAAAGTTACTCCAGA 60.470 40.741 11.94 6.85 44.82 3.86
2287 2392 0.385751 TGGAGCTTCGGATCATCGAC 59.614 55.000 0.00 0.00 39.01 4.20
2294 2399 1.949465 TCGGATCATCGACGAGAAGA 58.051 50.000 3.01 1.71 33.92 2.87
2295 2400 1.598132 TCGGATCATCGACGAGAAGAC 59.402 52.381 3.01 0.00 33.92 3.01
2297 2402 1.676529 GGATCATCGACGAGAAGACCA 59.323 52.381 3.01 0.00 28.50 4.02
2308 2413 2.611518 GAGAAGACCATCAAGACACCG 58.388 52.381 0.00 0.00 0.00 4.94
2309 2414 2.231478 GAGAAGACCATCAAGACACCGA 59.769 50.000 0.00 0.00 0.00 4.69
2319 2424 0.108615 AAGACACCGATGGAGCTTCG 60.109 55.000 0.00 0.00 36.38 3.79
2334 2439 1.139058 GCTTCGGATCATAGTGGTGGT 59.861 52.381 0.00 0.00 0.00 4.16
2524 2629 3.181445 TGCTCCAAAAGACCTTGCTTCTA 60.181 43.478 0.00 0.00 0.00 2.10
2566 2671 1.003112 ATTGGCCGCGGAGTTGTTA 60.003 52.632 33.48 6.13 0.00 2.41
2644 2749 2.202703 CTTAACCTCGACCGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
2682 2787 4.853196 CACCAACATCTACAAAATGAAGCG 59.147 41.667 0.00 0.00 0.00 4.68
2717 2822 3.961408 ACTCACTATTGCCCTAGGTGTAG 59.039 47.826 8.29 6.71 0.00 2.74
2737 2842 4.790718 AGTGGTGGTAGTTCCTCTTTTT 57.209 40.909 0.00 0.00 37.07 1.94
2776 2881 1.332195 TGGATGTATCTGGGCTCTCG 58.668 55.000 0.00 0.00 0.00 4.04
2882 2987 3.531934 CGTGGCAGAAGCAACAAGCAA 62.532 52.381 0.00 0.00 45.39 3.91
2913 3018 2.327343 GCAGCAAGGACGATGTGCA 61.327 57.895 0.00 0.00 40.83 4.57
2935 3040 3.895232 TCCTCAGGTATGCTCAAGTTC 57.105 47.619 0.00 0.00 0.00 3.01
2962 3067 3.060272 CAGATGTTTTACTGATAGCGGCG 60.060 47.826 0.51 0.51 36.38 6.46
3017 3122 0.804989 CCGGCTTGATCTCCAACAAC 59.195 55.000 0.00 0.00 0.00 3.32
3084 3189 7.180051 TGCTAGTATAGTCCTAGTACTCCCTAC 59.820 44.444 0.00 0.00 41.93 3.18
3136 3241 9.060347 CACCATATATACATCCCAATTATGAGC 57.940 37.037 0.00 0.00 0.00 4.26
3138 3243 9.803507 CCATATATACATCCCAATTATGAGCAT 57.196 33.333 0.00 0.00 0.00 3.79
3147 3252 4.697352 CCCAATTATGAGCATGGTAGCTAC 59.303 45.833 15.88 15.88 46.75 3.58
3208 3313 6.391227 AATCTAAGTGTCTTGTTGGGTTTG 57.609 37.500 0.00 0.00 0.00 2.93
3229 3334 9.607285 GGTTTGTTGTATCTTTTGTACTATGTG 57.393 33.333 0.00 0.00 0.00 3.21
3243 3348 8.712285 TTGTACTATGTGTTAGCTTTATCACC 57.288 34.615 0.00 0.00 0.00 4.02
3244 3349 7.842982 TGTACTATGTGTTAGCTTTATCACCA 58.157 34.615 0.00 0.00 0.00 4.17
3245 3350 7.979537 TGTACTATGTGTTAGCTTTATCACCAG 59.020 37.037 0.00 0.40 0.00 4.00
3246 3351 5.817816 ACTATGTGTTAGCTTTATCACCAGC 59.182 40.000 0.00 0.00 36.16 4.85
3247 3352 4.014569 TGTGTTAGCTTTATCACCAGCA 57.985 40.909 0.00 0.00 38.61 4.41
3248 3353 3.751175 TGTGTTAGCTTTATCACCAGCAC 59.249 43.478 0.00 0.00 38.61 4.40
3249 3354 4.003648 GTGTTAGCTTTATCACCAGCACT 58.996 43.478 0.00 0.00 38.61 4.40
3250 3355 5.175859 GTGTTAGCTTTATCACCAGCACTA 58.824 41.667 0.00 0.00 38.61 2.74
3251 3356 5.642063 GTGTTAGCTTTATCACCAGCACTAA 59.358 40.000 0.00 0.00 38.61 2.24
3252 3357 6.148811 GTGTTAGCTTTATCACCAGCACTAAA 59.851 38.462 0.00 0.00 38.61 1.85
3253 3358 6.371548 TGTTAGCTTTATCACCAGCACTAAAG 59.628 38.462 0.00 0.00 38.61 1.85
3254 3359 4.265073 AGCTTTATCACCAGCACTAAAGG 58.735 43.478 0.00 0.00 38.61 3.11
3255 3360 3.378427 GCTTTATCACCAGCACTAAAGGG 59.622 47.826 0.00 0.00 35.95 3.95
3256 3361 4.589908 CTTTATCACCAGCACTAAAGGGT 58.410 43.478 0.00 0.00 30.89 4.34
3260 3365 4.743018 CAGCACTAAAGGGTGGGG 57.257 61.111 0.00 0.00 37.65 4.96
3261 3366 2.074967 CAGCACTAAAGGGTGGGGA 58.925 57.895 0.00 0.00 37.65 4.81
3262 3367 0.322546 CAGCACTAAAGGGTGGGGAC 60.323 60.000 0.00 0.00 37.65 4.46
3263 3368 0.475828 AGCACTAAAGGGTGGGGACT 60.476 55.000 0.00 0.00 37.65 3.85
3264 3369 1.203389 AGCACTAAAGGGTGGGGACTA 60.203 52.381 0.00 0.00 37.65 2.59
3265 3370 1.065636 GCACTAAAGGGTGGGGACTAC 60.066 57.143 0.00 0.00 37.65 2.73
3266 3371 2.262637 CACTAAAGGGTGGGGACTACA 58.737 52.381 0.00 0.00 33.95 2.74
3267 3372 2.236395 CACTAAAGGGTGGGGACTACAG 59.764 54.545 0.00 0.00 33.95 2.74
3268 3373 1.838077 CTAAAGGGTGGGGACTACAGG 59.162 57.143 0.00 0.00 0.00 4.00
3269 3374 0.104090 AAAGGGTGGGGACTACAGGT 60.104 55.000 0.00 0.00 0.00 4.00
3270 3375 0.546988 AAGGGTGGGGACTACAGGTC 60.547 60.000 0.00 0.00 43.79 3.85
3291 3396 3.470645 CCCCCTTTAGTATCGGTTCTG 57.529 52.381 0.00 0.00 0.00 3.02
3292 3397 2.484947 CCCCCTTTAGTATCGGTTCTGC 60.485 54.545 0.00 0.00 0.00 4.26
3293 3398 2.169769 CCCCTTTAGTATCGGTTCTGCA 59.830 50.000 0.00 0.00 0.00 4.41
3294 3399 3.195661 CCCTTTAGTATCGGTTCTGCAC 58.804 50.000 0.00 0.00 0.00 4.57
3295 3400 2.858344 CCTTTAGTATCGGTTCTGCACG 59.142 50.000 0.00 0.00 0.00 5.34
3296 3401 3.428452 CCTTTAGTATCGGTTCTGCACGA 60.428 47.826 0.00 0.00 43.85 4.35
3297 3402 3.853831 TTAGTATCGGTTCTGCACGAA 57.146 42.857 1.01 0.00 42.88 3.85
3303 3408 4.072088 GTTCTGCACGAACCGCCG 62.072 66.667 14.47 0.00 45.00 6.46
3307 3412 4.666397 TGCACGAACCGCCGCTAA 62.666 61.111 0.00 0.00 31.41 3.09
3308 3413 3.416382 GCACGAACCGCCGCTAAA 61.416 61.111 0.00 0.00 0.00 1.85
3309 3414 2.957052 GCACGAACCGCCGCTAAAA 61.957 57.895 0.00 0.00 0.00 1.52
3310 3415 1.131826 CACGAACCGCCGCTAAAAG 59.868 57.895 0.00 0.00 0.00 2.27
3311 3416 2.030958 ACGAACCGCCGCTAAAAGG 61.031 57.895 0.00 0.00 0.00 3.11
3318 3423 3.274067 CCGCTAAAAGGCCACCAC 58.726 61.111 5.01 0.00 0.00 4.16
3319 3424 2.686816 CCGCTAAAAGGCCACCACG 61.687 63.158 5.01 0.03 0.00 4.94
3320 3425 1.964373 CGCTAAAAGGCCACCACGT 60.964 57.895 5.01 0.00 0.00 4.49
3321 3426 1.579429 GCTAAAAGGCCACCACGTG 59.421 57.895 9.08 9.08 0.00 4.49
3359 3464 1.437573 GCGGGAAGCCCTTTAATGC 59.562 57.895 0.38 0.00 42.67 3.56
3360 3465 2.016393 GCGGGAAGCCCTTTAATGCC 62.016 60.000 0.38 0.00 42.67 4.40
3361 3466 1.724582 CGGGAAGCCCTTTAATGCCG 61.725 60.000 0.38 0.00 42.67 5.69
3362 3467 1.437573 GGAAGCCCTTTAATGCCGC 59.562 57.895 0.00 0.00 0.00 6.53
3363 3468 1.037579 GGAAGCCCTTTAATGCCGCT 61.038 55.000 0.00 0.00 0.00 5.52
3364 3469 0.817654 GAAGCCCTTTAATGCCGCTT 59.182 50.000 11.36 11.36 42.25 4.68
3365 3470 0.532115 AAGCCCTTTAATGCCGCTTG 59.468 50.000 10.96 0.00 38.32 4.01
3366 3471 1.141665 GCCCTTTAATGCCGCTTGG 59.858 57.895 0.00 0.00 0.00 3.61
3367 3472 1.604147 GCCCTTTAATGCCGCTTGGT 61.604 55.000 0.00 0.00 34.16 3.67
3368 3473 1.757682 CCCTTTAATGCCGCTTGGTA 58.242 50.000 0.00 0.00 34.16 3.25
3369 3474 2.096248 CCCTTTAATGCCGCTTGGTAA 58.904 47.619 0.00 0.00 34.16 2.85
3370 3475 2.159296 CCCTTTAATGCCGCTTGGTAAC 60.159 50.000 0.00 0.00 34.16 2.50
3385 3490 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
3386 3491 4.001618 GGTAACACCAACCGGTACTAAA 57.998 45.455 8.00 0.00 46.94 1.85
3387 3492 4.384940 GGTAACACCAACCGGTACTAAAA 58.615 43.478 8.00 0.00 46.94 1.52
3388 3493 4.819088 GGTAACACCAACCGGTACTAAAAA 59.181 41.667 8.00 0.00 46.94 1.94
3407 3512 4.871871 AAAAATTGGGAGGTTTTGGGTT 57.128 36.364 0.00 0.00 0.00 4.11
3408 3513 4.431416 AAAATTGGGAGGTTTTGGGTTC 57.569 40.909 0.00 0.00 0.00 3.62
3409 3514 2.785357 ATTGGGAGGTTTTGGGTTCA 57.215 45.000 0.00 0.00 0.00 3.18
3410 3515 2.785357 TTGGGAGGTTTTGGGTTCAT 57.215 45.000 0.00 0.00 0.00 2.57
3411 3516 2.008242 TGGGAGGTTTTGGGTTCATG 57.992 50.000 0.00 0.00 0.00 3.07
3412 3517 1.501170 TGGGAGGTTTTGGGTTCATGA 59.499 47.619 0.00 0.00 0.00 3.07
3413 3518 2.111613 TGGGAGGTTTTGGGTTCATGAT 59.888 45.455 0.00 0.00 0.00 2.45
3414 3519 3.173151 GGGAGGTTTTGGGTTCATGATT 58.827 45.455 0.00 0.00 0.00 2.57
3415 3520 3.582647 GGGAGGTTTTGGGTTCATGATTT 59.417 43.478 0.00 0.00 0.00 2.17
3416 3521 4.322725 GGGAGGTTTTGGGTTCATGATTTC 60.323 45.833 0.00 0.00 0.00 2.17
3417 3522 4.528206 GGAGGTTTTGGGTTCATGATTTCT 59.472 41.667 0.00 0.00 0.00 2.52
3418 3523 5.012046 GGAGGTTTTGGGTTCATGATTTCTT 59.988 40.000 0.00 0.00 0.00 2.52
3419 3524 6.464322 GGAGGTTTTGGGTTCATGATTTCTTT 60.464 38.462 0.00 0.00 0.00 2.52
3420 3525 6.899089 AGGTTTTGGGTTCATGATTTCTTTT 58.101 32.000 0.00 0.00 0.00 2.27
3421 3526 7.345691 AGGTTTTGGGTTCATGATTTCTTTTT 58.654 30.769 0.00 0.00 0.00 1.94
3422 3527 7.498900 AGGTTTTGGGTTCATGATTTCTTTTTC 59.501 33.333 0.00 0.00 0.00 2.29
3423 3528 7.255104 GGTTTTGGGTTCATGATTTCTTTTTCC 60.255 37.037 0.00 0.00 0.00 3.13
3424 3529 6.745794 TTGGGTTCATGATTTCTTTTTCCT 57.254 33.333 0.00 0.00 0.00 3.36
3425 3530 6.745794 TGGGTTCATGATTTCTTTTTCCTT 57.254 33.333 0.00 0.00 0.00 3.36
3426 3531 7.135591 TGGGTTCATGATTTCTTTTTCCTTT 57.864 32.000 0.00 0.00 0.00 3.11
3427 3532 8.256356 TGGGTTCATGATTTCTTTTTCCTTTA 57.744 30.769 0.00 0.00 0.00 1.85
3428 3533 8.709308 TGGGTTCATGATTTCTTTTTCCTTTAA 58.291 29.630 0.00 0.00 0.00 1.52
3429 3534 9.725019 GGGTTCATGATTTCTTTTTCCTTTAAT 57.275 29.630 0.00 0.00 0.00 1.40
3478 3583 9.956797 TTTTCGTTTGCTAGTATTTTACGATAC 57.043 29.630 0.00 0.00 36.58 2.24
3479 3584 8.915871 TTCGTTTGCTAGTATTTTACGATACT 57.084 30.769 0.00 0.00 43.40 2.12
3481 3586 9.438291 TCGTTTGCTAGTATTTTACGATACTAC 57.562 33.333 0.00 0.00 41.70 2.73
3482 3587 9.225201 CGTTTGCTAGTATTTTACGATACTACA 57.775 33.333 0.00 0.00 41.70 2.74
3540 3645 1.915952 TAGACACACACACACACACG 58.084 50.000 0.00 0.00 0.00 4.49
3541 3646 0.245266 AGACACACACACACACACGA 59.755 50.000 0.00 0.00 0.00 4.35
3596 3701 0.175760 TTCTACGCTCTGGTCATGCC 59.824 55.000 0.00 0.00 37.90 4.40
3627 3732 2.419021 CCTCGGGCGAAACCAACTAATA 60.419 50.000 0.00 0.00 42.05 0.98
3653 3758 5.427857 TTCCACCTCCTAGTAATATCCCA 57.572 43.478 0.00 0.00 0.00 4.37
3712 3817 2.683465 ATGCACCAATCCTCCGCCT 61.683 57.895 0.00 0.00 0.00 5.52
3724 3829 3.861797 CCGCCTCGCCCCTACAAT 61.862 66.667 0.00 0.00 0.00 2.71
3764 3869 7.342026 ACATCCTGGTAAATTCCCTTGTAAATC 59.658 37.037 0.00 0.00 0.00 2.17
3803 3908 1.136305 TCGTTACTGGCTAGATGCACC 59.864 52.381 3.17 0.00 45.15 5.01
3812 3917 1.123077 CTAGATGCACCAGCCTACCA 58.877 55.000 0.00 0.00 41.13 3.25
3814 3919 0.035056 AGATGCACCAGCCTACCAAC 60.035 55.000 0.00 0.00 41.13 3.77
3815 3920 1.000896 ATGCACCAGCCTACCAACC 60.001 57.895 0.00 0.00 41.13 3.77
3816 3921 2.361230 GCACCAGCCTACCAACCC 60.361 66.667 0.00 0.00 33.58 4.11
3817 3922 3.166434 CACCAGCCTACCAACCCA 58.834 61.111 0.00 0.00 0.00 4.51
3818 3923 1.303317 CACCAGCCTACCAACCCAC 60.303 63.158 0.00 0.00 0.00 4.61
3819 3924 2.355115 CCAGCCTACCAACCCACC 59.645 66.667 0.00 0.00 0.00 4.61
3820 3925 2.355115 CAGCCTACCAACCCACCC 59.645 66.667 0.00 0.00 0.00 4.61
3821 3926 2.939353 AGCCTACCAACCCACCCC 60.939 66.667 0.00 0.00 0.00 4.95
3822 3927 4.419921 GCCTACCAACCCACCCCG 62.420 72.222 0.00 0.00 0.00 5.73
3823 3928 2.931649 CCTACCAACCCACCCCGT 60.932 66.667 0.00 0.00 0.00 5.28
3824 3929 1.613035 CCTACCAACCCACCCCGTA 60.613 63.158 0.00 0.00 0.00 4.02
3825 3930 1.598517 CTACCAACCCACCCCGTAC 59.401 63.158 0.00 0.00 0.00 3.67
3826 3931 0.906282 CTACCAACCCACCCCGTACT 60.906 60.000 0.00 0.00 0.00 2.73
3827 3932 0.411452 TACCAACCCACCCCGTACTA 59.589 55.000 0.00 0.00 0.00 1.82
3828 3933 0.906282 ACCAACCCACCCCGTACTAG 60.906 60.000 0.00 0.00 0.00 2.57
3829 3934 1.219935 CAACCCACCCCGTACTAGC 59.780 63.158 0.00 0.00 0.00 3.42
3830 3935 1.079804 AACCCACCCCGTACTAGCT 59.920 57.895 0.00 0.00 0.00 3.32
3831 3936 0.336048 AACCCACCCCGTACTAGCTA 59.664 55.000 0.00 0.00 0.00 3.32
3832 3937 0.396278 ACCCACCCCGTACTAGCTAC 60.396 60.000 0.00 0.00 0.00 3.58
3833 3938 0.106318 CCCACCCCGTACTAGCTACT 60.106 60.000 0.00 0.00 0.00 2.57
3837 3942 0.942962 CCCCGTACTAGCTACTCACG 59.057 60.000 9.12 9.12 0.00 4.35
3844 3949 4.375807 CGTACTAGCTACTCACGAATACCG 60.376 50.000 10.14 0.00 45.44 4.02
3861 3966 8.570096 CGAATACCGTCTAGTAAAATTCATCA 57.430 34.615 0.00 0.00 0.00 3.07
3908 4015 9.801873 AATTTGTTAATGTTGCATACATAGACC 57.198 29.630 12.78 5.20 46.75 3.85
3911 4018 6.478673 TGTTAATGTTGCATACATAGACCTCG 59.521 38.462 12.78 0.00 46.75 4.63
3915 4022 1.341209 TGCATACATAGACCTCGCCAG 59.659 52.381 0.00 0.00 0.00 4.85
3916 4023 1.613925 GCATACATAGACCTCGCCAGA 59.386 52.381 0.00 0.00 0.00 3.86
3921 4028 0.325296 ATAGACCTCGCCAGACCCAA 60.325 55.000 0.00 0.00 0.00 4.12
3923 4030 1.201429 AGACCTCGCCAGACCCAATT 61.201 55.000 0.00 0.00 0.00 2.32
3928 4035 1.482593 CTCGCCAGACCCAATTCTAGT 59.517 52.381 0.00 0.00 0.00 2.57
3930 4037 2.009774 CGCCAGACCCAATTCTAGTTG 58.990 52.381 0.00 0.00 0.00 3.16
3935 4042 5.070001 CCAGACCCAATTCTAGTTGTTCAA 58.930 41.667 0.00 0.00 0.00 2.69
3936 4043 5.048713 CCAGACCCAATTCTAGTTGTTCAAC 60.049 44.000 7.50 7.50 0.00 3.18
3940 4047 7.444487 AGACCCAATTCTAGTTGTTCAACTAAC 59.556 37.037 20.81 5.26 35.10 2.34
3965 4072 8.088365 ACTTTCATAGTAAAATCCCTTGCAAAC 58.912 33.333 0.00 0.00 34.56 2.93
3969 4076 5.806654 AGTAAAATCCCTTGCAAACACAT 57.193 34.783 0.00 0.00 0.00 3.21
3997 4104 8.947055 ATGAAATAAAAATGGTTACCAGATGC 57.053 30.769 10.74 0.00 36.75 3.91
4013 4120 2.972713 AGATGCATGTACGAGGGGTAAT 59.027 45.455 2.46 0.00 31.61 1.89
4025 4132 5.152934 ACGAGGGGTAATACTAATGTGGAT 58.847 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2052 2157 3.323243 CCTGTGTCTACGAAATTCCGTT 58.677 45.455 0.00 0.00 43.20 4.44
2063 2168 0.038159 ACAAGAGCGCCTGTGTCTAC 60.038 55.000 2.29 0.00 0.00 2.59
2098 2203 6.058183 GCTCAGGTTGATGTCCAGTAATAAT 58.942 40.000 0.00 0.00 0.00 1.28
2117 2222 1.025647 GCCAGCCAGAGAAAGCTCAG 61.026 60.000 0.00 0.00 43.81 3.35
2149 2254 3.936453 CTCCAATGAAAACAATGGCCATG 59.064 43.478 21.63 15.80 32.87 3.66
2167 2272 1.086696 GCTTGATGTAAAGCGCTCCA 58.913 50.000 12.06 8.79 42.86 3.86
2168 2273 3.905900 GCTTGATGTAAAGCGCTCC 57.094 52.632 12.06 1.97 42.86 4.70
2201 2306 6.739008 GGAGTAACTTTTCCATAGCTATCGCT 60.739 42.308 2.34 0.00 40.49 4.93
2203 2308 6.513180 TGGAGTAACTTTTCCATAGCTATCG 58.487 40.000 2.34 0.00 38.53 2.92
2210 2315 8.826765 AGAAGATTCTGGAGTAACTTTTCCATA 58.173 33.333 0.00 0.00 42.32 2.74
2220 2325 7.481642 GTCGATGTTAGAAGATTCTGGAGTAA 58.518 38.462 5.34 0.00 38.19 2.24
2229 2334 6.438259 TCTTCTCGTCGATGTTAGAAGATT 57.562 37.500 24.37 0.00 45.50 2.40
2281 2386 2.851805 TGATGGTCTTCTCGTCGATG 57.148 50.000 0.00 0.00 0.00 3.84
2282 2387 3.017442 TCTTGATGGTCTTCTCGTCGAT 58.983 45.455 0.00 0.00 0.00 3.59
2287 2392 2.611518 GGTGTCTTGATGGTCTTCTCG 58.388 52.381 0.00 0.00 0.00 4.04
2297 2402 1.198713 AGCTCCATCGGTGTCTTGAT 58.801 50.000 0.00 0.00 0.00 2.57
2308 2413 3.583806 CACTATGATCCGAAGCTCCATC 58.416 50.000 0.00 0.00 0.00 3.51
2309 2414 2.301296 CCACTATGATCCGAAGCTCCAT 59.699 50.000 0.00 0.00 0.00 3.41
2319 2424 3.914426 AAGTCACCACCACTATGATCC 57.086 47.619 0.00 0.00 0.00 3.36
2334 2439 1.909302 CTAGGAGAGCCCCAAAAGTCA 59.091 52.381 0.00 0.00 34.66 3.41
2524 2629 1.533469 GCACCGTCACCAGTAGGAGT 61.533 60.000 0.00 0.00 38.69 3.85
2566 2671 2.600769 AGAACCACGTCCTCGCCT 60.601 61.111 0.00 0.00 41.18 5.52
2621 2726 0.179134 CGGTCGAGGTTAAGGCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
2682 2787 4.744795 ATAGTGAGTCCCTTCATGTGTC 57.255 45.455 0.00 0.00 0.00 3.67
2717 2822 3.004419 GCAAAAAGAGGAACTACCACCAC 59.996 47.826 0.00 0.00 41.55 4.16
2737 2842 1.541379 TGGAGCTCACTAAGTACGCA 58.459 50.000 17.19 0.00 0.00 5.24
2776 2881 1.200483 CCATGATCGTCGTGCAGTAC 58.800 55.000 0.00 0.00 32.19 2.73
2889 2994 2.460662 ATCGTCCTTGCTGCTGCTGT 62.461 55.000 17.00 0.00 40.48 4.40
2913 3018 4.472833 AGAACTTGAGCATACCTGAGGAAT 59.527 41.667 4.99 0.00 0.00 3.01
2935 3040 4.274459 GCTATCAGTAAAACATCTGCCCAG 59.726 45.833 0.00 0.00 0.00 4.45
2977 3082 5.479306 CGGACATCAACCATATACCTTAGG 58.521 45.833 0.00 0.00 0.00 2.69
3017 3122 6.709397 TCGACATAGTCTACCAACTATAGTGG 59.291 42.308 6.06 12.20 39.82 4.00
3078 3183 6.614694 ACAACATACATACACAAGTAGGGA 57.385 37.500 0.00 0.00 36.37 4.20
3111 3216 8.780977 TGCTCATAATTGGGATGTATATATGGT 58.219 33.333 0.00 0.00 0.00 3.55
3125 3230 4.697352 GGTAGCTACCATGCTCATAATTGG 59.303 45.833 33.64 0.00 45.73 3.16
3126 3231 4.389992 CGGTAGCTACCATGCTCATAATTG 59.610 45.833 35.98 15.60 46.80 2.32
3127 3232 4.283467 TCGGTAGCTACCATGCTCATAATT 59.717 41.667 35.98 0.00 46.80 1.40
3133 3238 1.409427 ACTTCGGTAGCTACCATGCTC 59.591 52.381 35.98 13.52 46.80 4.26
3136 3241 5.416947 ACTTTTACTTCGGTAGCTACCATG 58.583 41.667 35.98 26.90 46.80 3.66
3138 3243 5.476599 TGTACTTTTACTTCGGTAGCTACCA 59.523 40.000 35.98 22.96 46.80 3.25
3208 3313 9.968743 GCTAACACATAGTACAAAAGATACAAC 57.031 33.333 0.00 0.00 33.87 3.32
3229 3334 6.183360 CCTTTAGTGCTGGTGATAAAGCTAAC 60.183 42.308 0.00 0.00 40.21 2.34
3242 3347 1.000896 CCCCACCCTTTAGTGCTGG 60.001 63.158 0.00 0.00 36.38 4.85
3243 3348 0.322546 GTCCCCACCCTTTAGTGCTG 60.323 60.000 0.00 0.00 36.38 4.41
3244 3349 0.475828 AGTCCCCACCCTTTAGTGCT 60.476 55.000 0.00 0.00 36.38 4.40
3245 3350 1.065636 GTAGTCCCCACCCTTTAGTGC 60.066 57.143 0.00 0.00 36.38 4.40
3246 3351 2.236395 CTGTAGTCCCCACCCTTTAGTG 59.764 54.545 0.00 0.00 37.51 2.74
3247 3352 2.547990 CTGTAGTCCCCACCCTTTAGT 58.452 52.381 0.00 0.00 0.00 2.24
3248 3353 1.838077 CCTGTAGTCCCCACCCTTTAG 59.162 57.143 0.00 0.00 0.00 1.85
3249 3354 1.152701 ACCTGTAGTCCCCACCCTTTA 59.847 52.381 0.00 0.00 0.00 1.85
3250 3355 0.104090 ACCTGTAGTCCCCACCCTTT 60.104 55.000 0.00 0.00 0.00 3.11
3251 3356 0.546988 GACCTGTAGTCCCCACCCTT 60.547 60.000 0.00 0.00 39.84 3.95
3252 3357 1.080538 GACCTGTAGTCCCCACCCT 59.919 63.158 0.00 0.00 39.84 4.34
3253 3358 3.723245 GACCTGTAGTCCCCACCC 58.277 66.667 0.00 0.00 39.84 4.61
3271 3376 2.484947 GCAGAACCGATACTAAAGGGGG 60.485 54.545 0.00 0.00 0.00 5.40
3272 3377 2.169769 TGCAGAACCGATACTAAAGGGG 59.830 50.000 0.00 0.00 0.00 4.79
3273 3378 3.195661 GTGCAGAACCGATACTAAAGGG 58.804 50.000 0.00 0.00 0.00 3.95
3274 3379 2.858344 CGTGCAGAACCGATACTAAAGG 59.142 50.000 0.00 0.00 0.00 3.11
3275 3380 3.766151 TCGTGCAGAACCGATACTAAAG 58.234 45.455 0.00 0.00 0.00 1.85
3276 3381 3.853831 TCGTGCAGAACCGATACTAAA 57.146 42.857 0.00 0.00 0.00 1.85
3277 3382 3.853831 TTCGTGCAGAACCGATACTAA 57.146 42.857 0.00 0.00 33.14 2.24
3290 3395 4.666397 TTAGCGGCGGTTCGTGCA 62.666 61.111 19.60 0.00 34.12 4.57
3291 3396 2.827959 CTTTTAGCGGCGGTTCGTGC 62.828 60.000 19.60 0.00 0.00 5.34
3292 3397 1.131826 CTTTTAGCGGCGGTTCGTG 59.868 57.895 19.60 1.99 0.00 4.35
3293 3398 2.030958 CCTTTTAGCGGCGGTTCGT 61.031 57.895 19.60 0.00 0.00 3.85
3294 3399 2.782615 CCTTTTAGCGGCGGTTCG 59.217 61.111 19.60 3.23 0.00 3.95
3295 3400 2.483745 GCCTTTTAGCGGCGGTTC 59.516 61.111 19.60 0.00 37.87 3.62
3300 3405 2.675075 TGGTGGCCTTTTAGCGGC 60.675 61.111 3.32 0.00 46.83 6.53
3301 3406 2.686816 CGTGGTGGCCTTTTAGCGG 61.687 63.158 3.32 0.00 0.00 5.52
3302 3407 1.964373 ACGTGGTGGCCTTTTAGCG 60.964 57.895 3.32 3.85 0.00 4.26
3303 3408 1.579429 CACGTGGTGGCCTTTTAGC 59.421 57.895 7.95 0.00 0.00 3.09
3343 3448 2.016393 GCGGCATTAAAGGGCTTCCC 62.016 60.000 0.00 0.00 45.90 3.97
3344 3449 1.037579 AGCGGCATTAAAGGGCTTCC 61.038 55.000 1.45 0.00 0.00 3.46
3345 3450 0.817654 AAGCGGCATTAAAGGGCTTC 59.182 50.000 1.45 0.00 39.58 3.86
3346 3451 0.532115 CAAGCGGCATTAAAGGGCTT 59.468 50.000 1.45 0.00 44.13 4.35
3347 3452 1.322538 CCAAGCGGCATTAAAGGGCT 61.323 55.000 1.45 0.00 35.01 5.19
3348 3453 1.141665 CCAAGCGGCATTAAAGGGC 59.858 57.895 1.45 0.00 0.00 5.19
3349 3454 1.757682 TACCAAGCGGCATTAAAGGG 58.242 50.000 1.45 0.00 34.57 3.95
3350 3455 2.490115 TGTTACCAAGCGGCATTAAAGG 59.510 45.455 1.45 0.00 34.57 3.11
3351 3456 3.498082 GTGTTACCAAGCGGCATTAAAG 58.502 45.455 1.45 0.00 34.57 1.85
3352 3457 2.229302 GGTGTTACCAAGCGGCATTAAA 59.771 45.455 1.45 0.00 38.42 1.52
3353 3458 1.813786 GGTGTTACCAAGCGGCATTAA 59.186 47.619 1.45 0.00 38.42 1.40
3354 3459 1.455248 GGTGTTACCAAGCGGCATTA 58.545 50.000 1.45 0.00 38.42 1.90
3355 3460 2.263153 GGTGTTACCAAGCGGCATT 58.737 52.632 1.45 0.00 38.42 3.56
3356 3461 3.996614 GGTGTTACCAAGCGGCAT 58.003 55.556 1.45 0.00 38.42 4.40
3386 3491 4.228438 TGAACCCAAAACCTCCCAATTTTT 59.772 37.500 0.00 0.00 0.00 1.94
3387 3492 3.783082 TGAACCCAAAACCTCCCAATTTT 59.217 39.130 0.00 0.00 0.00 1.82
3388 3493 3.388913 TGAACCCAAAACCTCCCAATTT 58.611 40.909 0.00 0.00 0.00 1.82
3389 3494 3.053359 TGAACCCAAAACCTCCCAATT 57.947 42.857 0.00 0.00 0.00 2.32
3390 3495 2.785357 TGAACCCAAAACCTCCCAAT 57.215 45.000 0.00 0.00 0.00 3.16
3391 3496 2.091055 TCATGAACCCAAAACCTCCCAA 60.091 45.455 0.00 0.00 0.00 4.12
3392 3497 1.501170 TCATGAACCCAAAACCTCCCA 59.499 47.619 0.00 0.00 0.00 4.37
3393 3498 2.302587 TCATGAACCCAAAACCTCCC 57.697 50.000 0.00 0.00 0.00 4.30
3394 3499 4.528206 AGAAATCATGAACCCAAAACCTCC 59.472 41.667 0.00 0.00 0.00 4.30
3395 3500 5.728637 AGAAATCATGAACCCAAAACCTC 57.271 39.130 0.00 0.00 0.00 3.85
3396 3501 6.499106 AAAGAAATCATGAACCCAAAACCT 57.501 33.333 0.00 0.00 0.00 3.50
3397 3502 7.255104 GGAAAAAGAAATCATGAACCCAAAACC 60.255 37.037 0.00 0.00 0.00 3.27
3398 3503 7.498900 AGGAAAAAGAAATCATGAACCCAAAAC 59.501 33.333 0.00 0.00 0.00 2.43
3399 3504 7.572814 AGGAAAAAGAAATCATGAACCCAAAA 58.427 30.769 0.00 0.00 0.00 2.44
3400 3505 7.135591 AGGAAAAAGAAATCATGAACCCAAA 57.864 32.000 0.00 0.00 0.00 3.28
3401 3506 6.745794 AGGAAAAAGAAATCATGAACCCAA 57.254 33.333 0.00 0.00 0.00 4.12
3402 3507 6.745794 AAGGAAAAAGAAATCATGAACCCA 57.254 33.333 0.00 0.00 0.00 4.51
3403 3508 9.725019 ATTAAAGGAAAAAGAAATCATGAACCC 57.275 29.630 0.00 0.00 0.00 4.11
3452 3557 9.956797 GTATCGTAAAATACTAGCAAACGAAAA 57.043 29.630 0.00 0.00 40.71 2.29
3453 3558 9.357652 AGTATCGTAAAATACTAGCAAACGAAA 57.642 29.630 0.00 0.00 39.99 3.46
3454 3559 8.915871 AGTATCGTAAAATACTAGCAAACGAA 57.084 30.769 0.00 0.00 39.99 3.85
3455 3560 9.438291 GTAGTATCGTAAAATACTAGCAAACGA 57.562 33.333 4.45 0.00 42.51 3.85
3456 3561 9.225201 TGTAGTATCGTAAAATACTAGCAAACG 57.775 33.333 4.45 0.00 42.51 3.60
3523 3628 1.005032 CATCGTGTGTGTGTGTGTGTC 60.005 52.381 0.00 0.00 0.00 3.67
3525 3630 0.304401 CCATCGTGTGTGTGTGTGTG 59.696 55.000 0.00 0.00 0.00 3.82
3527 3632 1.279539 GCCATCGTGTGTGTGTGTG 59.720 57.895 0.00 0.00 0.00 3.82
3529 3634 2.550772 CGCCATCGTGTGTGTGTG 59.449 61.111 0.00 0.00 0.00 3.82
3533 3638 0.179225 GTTTAGCGCCATCGTGTGTG 60.179 55.000 2.29 0.00 38.14 3.82
3535 3640 0.095245 CAGTTTAGCGCCATCGTGTG 59.905 55.000 2.29 0.00 38.14 3.82
3613 3718 6.150474 AGGTGGAATGTTATTAGTTGGTTTCG 59.850 38.462 0.00 0.00 0.00 3.46
3627 3732 6.272558 GGGATATTACTAGGAGGTGGAATGTT 59.727 42.308 0.00 0.00 0.00 2.71
3669 3774 7.650890 TGCATCTAGTAACGGATTTAATACGA 58.349 34.615 17.08 0.00 39.52 3.43
3670 3775 7.862741 TGCATCTAGTAACGGATTTAATACG 57.137 36.000 8.15 8.15 43.82 3.06
3672 3777 7.875554 TGCATGCATCTAGTAACGGATTTAATA 59.124 33.333 18.46 0.00 0.00 0.98
3681 3786 2.549926 TGGTGCATGCATCTAGTAACG 58.450 47.619 30.00 0.00 0.00 3.18
3712 3817 3.646162 AGATGAATACATTGTAGGGGCGA 59.354 43.478 2.53 0.00 36.82 5.54
3722 3827 8.497910 ACCAGGATGTAGTAGATGAATACATT 57.502 34.615 0.00 0.00 39.58 2.71
3724 3829 9.429109 TTTACCAGGATGTAGTAGATGAATACA 57.571 33.333 0.00 0.00 34.17 2.29
3782 3887 2.418197 GGTGCATCTAGCCAGTAACGAA 60.418 50.000 0.00 0.00 44.83 3.85
3794 3899 1.209504 GTTGGTAGGCTGGTGCATCTA 59.790 52.381 0.00 0.00 41.91 1.98
3795 3900 0.035056 GTTGGTAGGCTGGTGCATCT 60.035 55.000 0.00 0.00 41.91 2.90
3803 3908 2.355115 GGGTGGGTTGGTAGGCTG 59.645 66.667 0.00 0.00 0.00 4.85
3812 3917 0.336048 TAGCTAGTACGGGGTGGGTT 59.664 55.000 0.00 0.00 0.00 4.11
3814 3919 0.106318 AGTAGCTAGTACGGGGTGGG 60.106 60.000 0.00 0.00 36.66 4.61
3815 3920 1.316651 GAGTAGCTAGTACGGGGTGG 58.683 60.000 0.00 0.00 36.66 4.61
3816 3921 1.674962 GTGAGTAGCTAGTACGGGGTG 59.325 57.143 0.00 0.00 36.66 4.61
3817 3922 1.745141 CGTGAGTAGCTAGTACGGGGT 60.745 57.143 16.40 0.00 36.66 4.95
3818 3923 0.942962 CGTGAGTAGCTAGTACGGGG 59.057 60.000 16.40 0.00 36.66 5.73
3819 3924 1.945387 TCGTGAGTAGCTAGTACGGG 58.055 55.000 20.53 6.46 36.66 5.28
3820 3925 4.084118 GGTATTCGTGAGTAGCTAGTACGG 60.084 50.000 20.53 7.79 36.66 4.02
3821 3926 4.375807 CGGTATTCGTGAGTAGCTAGTACG 60.376 50.000 17.37 17.37 36.66 3.67
3822 3927 5.016275 CGGTATTCGTGAGTAGCTAGTAC 57.984 47.826 0.00 0.26 0.00 2.73
3892 3997 2.483013 GGCGAGGTCTATGTATGCAACA 60.483 50.000 0.00 0.00 43.86 3.33
3893 3998 2.135933 GGCGAGGTCTATGTATGCAAC 58.864 52.381 0.00 0.00 0.00 4.17
3894 3999 1.760029 TGGCGAGGTCTATGTATGCAA 59.240 47.619 0.00 0.00 0.00 4.08
3895 4000 1.341209 CTGGCGAGGTCTATGTATGCA 59.659 52.381 0.00 0.00 0.00 3.96
3896 4001 1.613925 TCTGGCGAGGTCTATGTATGC 59.386 52.381 0.00 0.00 0.00 3.14
3897 4002 2.029828 GGTCTGGCGAGGTCTATGTATG 60.030 54.545 0.00 0.00 0.00 2.39
3898 4003 2.240279 GGTCTGGCGAGGTCTATGTAT 58.760 52.381 0.00 0.00 0.00 2.29
3899 4004 1.688772 GGTCTGGCGAGGTCTATGTA 58.311 55.000 0.00 0.00 0.00 2.29
3900 4005 1.043673 GGGTCTGGCGAGGTCTATGT 61.044 60.000 0.00 0.00 0.00 2.29
3901 4006 1.043116 TGGGTCTGGCGAGGTCTATG 61.043 60.000 0.00 0.00 0.00 2.23
3902 4007 0.325296 TTGGGTCTGGCGAGGTCTAT 60.325 55.000 0.00 0.00 0.00 1.98
3908 4015 1.482593 ACTAGAATTGGGTCTGGCGAG 59.517 52.381 0.00 0.00 29.55 5.03
3911 4018 3.073274 ACAACTAGAATTGGGTCTGGC 57.927 47.619 0.00 0.00 33.63 4.85
3935 4042 8.957466 GCAAGGGATTTTACTATGAAAGTTAGT 58.043 33.333 0.00 0.00 39.80 2.24
3936 4043 8.956426 TGCAAGGGATTTTACTATGAAAGTTAG 58.044 33.333 0.00 0.00 39.80 2.34
3940 4047 8.087750 TGTTTGCAAGGGATTTTACTATGAAAG 58.912 33.333 0.00 0.00 0.00 2.62
3955 4062 8.545229 TTATTTCATTAATGTGTTTGCAAGGG 57.455 30.769 14.97 0.00 0.00 3.95
3992 4099 2.082140 TACCCCTCGTACATGCATCT 57.918 50.000 0.00 0.00 0.00 2.90
3997 4104 6.866770 CACATTAGTATTACCCCTCGTACATG 59.133 42.308 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.