Multiple sequence alignment - TraesCS3B01G014500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G014500 chr3B 100.000 2621 0 0 1 2621 6179705 6177085 0.000000e+00 4841.0
1 TraesCS3B01G014500 chr3B 96.596 705 18 3 1921 2621 8791256 8790554 0.000000e+00 1164.0
2 TraesCS3B01G014500 chr3D 92.704 1302 68 12 558 1845 327881 329169 0.000000e+00 1853.0
3 TraesCS3B01G014500 chr3A 89.260 1378 110 20 544 1919 9281579 9280238 0.000000e+00 1690.0
4 TraesCS3B01G014500 chr3A 96.333 709 22 2 1917 2621 66352252 66351544 0.000000e+00 1162.0
5 TraesCS3B01G014500 chr3A 91.751 497 31 3 1148 1641 9276070 9275581 0.000000e+00 682.0
6 TraesCS3B01G014500 chr3A 85.965 285 23 9 1636 1919 9274459 9274191 3.300000e-74 289.0
7 TraesCS3B01G014500 chr3A 86.730 211 16 5 1635 1845 9280010 9279812 9.440000e-55 224.0
8 TraesCS3B01G014500 chr3A 82.090 201 27 7 591 787 9281798 9281603 2.090000e-36 163.0
9 TraesCS3B01G014500 chr4B 97.432 701 18 0 1921 2621 660132142 660131442 0.000000e+00 1195.0
10 TraesCS3B01G014500 chr7B 97.147 701 19 1 1921 2621 741904455 741903756 0.000000e+00 1182.0
11 TraesCS3B01G014500 chr2B 96.728 703 21 1 1921 2621 73114672 73113970 0.000000e+00 1170.0
12 TraesCS3B01G014500 chr2B 96.586 703 22 1 1921 2621 207620354 207621056 0.000000e+00 1164.0
13 TraesCS3B01G014500 chr2A 96.586 703 22 1 1921 2621 762717295 762717997 0.000000e+00 1164.0
14 TraesCS3B01G014500 chrUn 96.454 705 21 2 1921 2621 53744969 53744265 0.000000e+00 1160.0
15 TraesCS3B01G014500 chr6B 95.700 721 25 5 1907 2621 478462157 478462877 0.000000e+00 1155.0
16 TraesCS3B01G014500 chr6A 89.535 86 7 2 362 445 166509841 166509926 9.920000e-20 108.0
17 TraesCS3B01G014500 chr6A 91.304 69 6 0 362 430 127193533 127193465 7.720000e-16 95.3
18 TraesCS3B01G014500 chr7A 94.444 36 2 0 195 230 624959228 624959193 3.640000e-04 56.5
19 TraesCS3B01G014500 chr1D 100.000 28 0 0 199 226 234743717 234743744 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G014500 chr3B 6177085 6179705 2620 True 4841.0 4841 100.0000 1 2621 1 chr3B.!!$R1 2620
1 TraesCS3B01G014500 chr3B 8790554 8791256 702 True 1164.0 1164 96.5960 1921 2621 1 chr3B.!!$R2 700
2 TraesCS3B01G014500 chr3D 327881 329169 1288 False 1853.0 1853 92.7040 558 1845 1 chr3D.!!$F1 1287
3 TraesCS3B01G014500 chr3A 66351544 66352252 708 True 1162.0 1162 96.3330 1917 2621 1 chr3A.!!$R1 704
4 TraesCS3B01G014500 chr3A 9274191 9281798 7607 True 609.6 1690 87.1592 544 1919 5 chr3A.!!$R2 1375
5 TraesCS3B01G014500 chr4B 660131442 660132142 700 True 1195.0 1195 97.4320 1921 2621 1 chr4B.!!$R1 700
6 TraesCS3B01G014500 chr7B 741903756 741904455 699 True 1182.0 1182 97.1470 1921 2621 1 chr7B.!!$R1 700
7 TraesCS3B01G014500 chr2B 73113970 73114672 702 True 1170.0 1170 96.7280 1921 2621 1 chr2B.!!$R1 700
8 TraesCS3B01G014500 chr2B 207620354 207621056 702 False 1164.0 1164 96.5860 1921 2621 1 chr2B.!!$F1 700
9 TraesCS3B01G014500 chr2A 762717295 762717997 702 False 1164.0 1164 96.5860 1921 2621 1 chr2A.!!$F1 700
10 TraesCS3B01G014500 chrUn 53744265 53744969 704 True 1160.0 1160 96.4540 1921 2621 1 chrUn.!!$R1 700
11 TraesCS3B01G014500 chr6B 478462157 478462877 720 False 1155.0 1155 95.7000 1907 2621 1 chr6B.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 516 0.034476 GCTAGGGCGTTGGTATACCC 59.966 60.0 19.42 2.45 43.17 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2405 0.390124 ACGCACGGGTGTTCTTCTAA 59.61 50.0 0.0 0.0 32.83 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.656646 ATCAGACCGTGCGCTCAA 59.343 55.556 9.73 0.00 0.00 3.02
18 19 1.005037 ATCAGACCGTGCGCTCAAA 60.005 52.632 9.73 0.00 0.00 2.69
19 20 1.016130 ATCAGACCGTGCGCTCAAAG 61.016 55.000 9.73 0.00 0.00 2.77
20 21 1.664649 CAGACCGTGCGCTCAAAGA 60.665 57.895 9.73 0.00 0.00 2.52
22 23 1.204312 GACCGTGCGCTCAAAGAAC 59.796 57.895 9.73 0.00 0.00 3.01
27 28 0.095417 GTGCGCTCAAAGAACCGATC 59.905 55.000 9.73 0.00 0.00 3.69
28 29 1.019278 TGCGCTCAAAGAACCGATCC 61.019 55.000 9.73 0.00 0.00 3.36
29 30 1.706287 GCGCTCAAAGAACCGATCCC 61.706 60.000 0.00 0.00 0.00 3.85
30 31 0.391130 CGCTCAAAGAACCGATCCCA 60.391 55.000 0.00 0.00 0.00 4.37
32 33 1.740025 GCTCAAAGAACCGATCCCAAG 59.260 52.381 0.00 0.00 0.00 3.61
34 35 3.265791 CTCAAAGAACCGATCCCAAGAG 58.734 50.000 0.00 0.00 0.00 2.85
35 36 2.903784 TCAAAGAACCGATCCCAAGAGA 59.096 45.455 0.00 0.00 0.00 3.10
37 38 0.818296 AGAACCGATCCCAAGAGACG 59.182 55.000 0.00 0.00 0.00 4.18
38 39 0.531200 GAACCGATCCCAAGAGACGT 59.469 55.000 0.00 0.00 0.00 4.34
39 40 0.974383 AACCGATCCCAAGAGACGTT 59.026 50.000 0.00 0.00 0.00 3.99
40 41 0.246635 ACCGATCCCAAGAGACGTTG 59.753 55.000 0.00 0.00 0.00 4.10
41 42 0.460284 CCGATCCCAAGAGACGTTGG 60.460 60.000 0.00 0.00 45.88 3.77
43 44 0.250513 GATCCCAAGAGACGTTGGCT 59.749 55.000 0.00 0.00 45.08 4.75
44 45 0.250513 ATCCCAAGAGACGTTGGCTC 59.749 55.000 0.00 0.00 45.08 4.70
45 46 1.376037 CCCAAGAGACGTTGGCTCC 60.376 63.158 0.00 0.00 45.08 4.70
46 47 1.371183 CCAAGAGACGTTGGCTCCA 59.629 57.895 0.00 0.00 40.70 3.86
48 49 1.207089 CCAAGAGACGTTGGCTCCATA 59.793 52.381 0.00 0.00 40.70 2.74
49 50 2.158900 CCAAGAGACGTTGGCTCCATAT 60.159 50.000 0.00 0.00 40.70 1.78
50 51 3.126831 CAAGAGACGTTGGCTCCATATC 58.873 50.000 0.00 0.00 32.82 1.63
51 52 2.388735 AGAGACGTTGGCTCCATATCA 58.611 47.619 0.00 0.00 32.82 2.15
52 53 2.968574 AGAGACGTTGGCTCCATATCAT 59.031 45.455 0.00 0.00 32.82 2.45
53 54 3.389329 AGAGACGTTGGCTCCATATCATT 59.611 43.478 0.00 0.00 32.82 2.57
54 55 4.130118 GAGACGTTGGCTCCATATCATTT 58.870 43.478 0.00 0.00 0.00 2.32
56 57 3.214328 ACGTTGGCTCCATATCATTTCC 58.786 45.455 0.00 0.00 0.00 3.13
57 58 3.213506 CGTTGGCTCCATATCATTTCCA 58.786 45.455 0.00 0.00 0.00 3.53
59 60 4.097741 CGTTGGCTCCATATCATTTCCAAA 59.902 41.667 0.00 0.00 34.39 3.28
61 62 6.405538 GTTGGCTCCATATCATTTCCAAAAA 58.594 36.000 0.00 0.00 34.39 1.94
62 63 5.976458 TGGCTCCATATCATTTCCAAAAAC 58.024 37.500 0.00 0.00 0.00 2.43
63 64 5.721000 TGGCTCCATATCATTTCCAAAAACT 59.279 36.000 0.00 0.00 0.00 2.66
65 66 7.398618 TGGCTCCATATCATTTCCAAAAACTAA 59.601 33.333 0.00 0.00 0.00 2.24
66 67 8.257306 GGCTCCATATCATTTCCAAAAACTAAA 58.743 33.333 0.00 0.00 0.00 1.85
74 75 8.990163 TCATTTCCAAAAACTAAACTAGAGGT 57.010 30.769 0.00 0.00 0.00 3.85
90 91 8.431910 AACTAGAGGTAAAAACATCTAGGTGA 57.568 34.615 23.36 0.00 45.65 4.02
91 92 8.532819 AACTAGAGGTAAAAACATCTAGGTGAG 58.467 37.037 23.36 8.18 45.65 3.51
92 93 5.735766 AGAGGTAAAAACATCTAGGTGAGC 58.264 41.667 10.76 0.00 0.00 4.26
93 94 4.504858 AGGTAAAAACATCTAGGTGAGCG 58.495 43.478 10.76 0.00 0.00 5.03
95 96 4.567159 GGTAAAAACATCTAGGTGAGCGAG 59.433 45.833 10.76 0.00 0.00 5.03
96 97 3.963428 AAAACATCTAGGTGAGCGAGT 57.037 42.857 10.76 0.00 0.00 4.18
98 99 1.107114 ACATCTAGGTGAGCGAGTGG 58.893 55.000 10.76 0.00 0.00 4.00
99 100 1.341089 ACATCTAGGTGAGCGAGTGGA 60.341 52.381 10.76 0.00 0.00 4.02
101 102 1.919240 TCTAGGTGAGCGAGTGGAAA 58.081 50.000 0.00 0.00 0.00 3.13
103 104 0.895530 TAGGTGAGCGAGTGGAAAGG 59.104 55.000 0.00 0.00 0.00 3.11
104 105 0.832135 AGGTGAGCGAGTGGAAAGGA 60.832 55.000 0.00 0.00 0.00 3.36
105 106 0.034896 GGTGAGCGAGTGGAAAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
107 108 2.427506 GTGAGCGAGTGGAAAGGAAAT 58.572 47.619 0.00 0.00 0.00 2.17
109 110 4.000988 GTGAGCGAGTGGAAAGGAAATTA 58.999 43.478 0.00 0.00 0.00 1.40
111 112 4.254492 GAGCGAGTGGAAAGGAAATTACT 58.746 43.478 0.00 0.00 0.00 2.24
112 113 5.046878 TGAGCGAGTGGAAAGGAAATTACTA 60.047 40.000 0.00 0.00 0.00 1.82
113 114 5.420409 AGCGAGTGGAAAGGAAATTACTAG 58.580 41.667 0.00 0.00 0.00 2.57
114 115 4.571176 GCGAGTGGAAAGGAAATTACTAGG 59.429 45.833 0.00 0.00 0.00 3.02
115 116 5.731591 CGAGTGGAAAGGAAATTACTAGGT 58.268 41.667 0.00 0.00 0.00 3.08
116 117 5.581085 CGAGTGGAAAGGAAATTACTAGGTG 59.419 44.000 0.00 0.00 0.00 4.00
117 118 5.254115 AGTGGAAAGGAAATTACTAGGTGC 58.746 41.667 0.00 0.00 0.00 5.01
118 119 5.007682 GTGGAAAGGAAATTACTAGGTGCA 58.992 41.667 0.00 0.00 0.00 4.57
119 120 5.007682 TGGAAAGGAAATTACTAGGTGCAC 58.992 41.667 8.80 8.80 0.00 4.57
120 121 5.222048 TGGAAAGGAAATTACTAGGTGCACT 60.222 40.000 17.98 5.41 0.00 4.40
121 122 6.013206 TGGAAAGGAAATTACTAGGTGCACTA 60.013 38.462 17.98 6.34 0.00 2.74
122 123 6.315642 GGAAAGGAAATTACTAGGTGCACTAC 59.684 42.308 17.98 0.06 0.00 2.73
125 126 6.958767 AGGAAATTACTAGGTGCACTACATT 58.041 36.000 17.98 4.35 0.00 2.71
126 127 7.402862 AGGAAATTACTAGGTGCACTACATTT 58.597 34.615 17.98 12.07 0.00 2.32
127 128 7.888546 AGGAAATTACTAGGTGCACTACATTTT 59.111 33.333 17.98 8.36 0.00 1.82
131 132 7.548196 TTACTAGGTGCACTACATTTTATGC 57.452 36.000 17.98 0.00 38.59 3.14
132 133 5.745227 ACTAGGTGCACTACATTTTATGCT 58.255 37.500 17.98 2.93 38.90 3.79
133 134 4.970662 AGGTGCACTACATTTTATGCTG 57.029 40.909 17.98 0.00 38.90 4.41
134 135 4.335416 AGGTGCACTACATTTTATGCTGT 58.665 39.130 17.98 0.00 38.90 4.40
135 136 4.156556 AGGTGCACTACATTTTATGCTGTG 59.843 41.667 17.98 0.00 38.90 3.66
140 141 5.097529 CACTACATTTTATGCTGTGCAAGG 58.902 41.667 0.00 0.00 43.62 3.61
141 142 5.009631 ACTACATTTTATGCTGTGCAAGGA 58.990 37.500 0.00 0.00 43.62 3.36
143 144 5.410355 ACATTTTATGCTGTGCAAGGAAT 57.590 34.783 0.00 0.00 43.62 3.01
144 145 6.528537 ACATTTTATGCTGTGCAAGGAATA 57.471 33.333 0.00 0.00 43.62 1.75
145 146 6.934056 ACATTTTATGCTGTGCAAGGAATAA 58.066 32.000 0.00 0.00 43.62 1.40
146 147 6.813152 ACATTTTATGCTGTGCAAGGAATAAC 59.187 34.615 0.00 0.00 43.62 1.89
147 148 4.981806 TTATGCTGTGCAAGGAATAACC 57.018 40.909 0.00 0.00 43.62 2.85
149 150 2.591923 TGCTGTGCAAGGAATAACCAA 58.408 42.857 0.00 0.00 35.63 3.67
150 151 3.164268 TGCTGTGCAAGGAATAACCAAT 58.836 40.909 0.00 0.00 35.63 3.16
151 152 3.193267 TGCTGTGCAAGGAATAACCAATC 59.807 43.478 0.00 0.00 35.63 2.67
152 153 3.193267 GCTGTGCAAGGAATAACCAATCA 59.807 43.478 0.00 0.00 42.04 2.57
154 155 4.661222 TGTGCAAGGAATAACCAATCAGA 58.339 39.130 0.00 0.00 42.04 3.27
155 156 4.701651 TGTGCAAGGAATAACCAATCAGAG 59.298 41.667 0.00 0.00 42.04 3.35
156 157 3.696051 TGCAAGGAATAACCAATCAGAGC 59.304 43.478 0.00 0.00 42.04 4.09
159 160 5.336690 GCAAGGAATAACCAATCAGAGCAAA 60.337 40.000 0.00 0.00 42.04 3.68
160 161 6.690530 CAAGGAATAACCAATCAGAGCAAAA 58.309 36.000 0.00 0.00 42.04 2.44
161 162 6.272822 AGGAATAACCAATCAGAGCAAAAC 57.727 37.500 0.00 0.00 42.04 2.43
162 163 5.185828 AGGAATAACCAATCAGAGCAAAACC 59.814 40.000 0.00 0.00 42.04 3.27
164 165 2.270352 ACCAATCAGAGCAAAACCGA 57.730 45.000 0.00 0.00 0.00 4.69
167 168 3.573967 ACCAATCAGAGCAAAACCGAATT 59.426 39.130 0.00 0.00 0.00 2.17
169 170 4.549458 CAATCAGAGCAAAACCGAATTGT 58.451 39.130 0.00 0.00 0.00 2.71
170 171 5.335583 CCAATCAGAGCAAAACCGAATTGTA 60.336 40.000 0.00 0.00 0.00 2.41
171 172 4.742438 TCAGAGCAAAACCGAATTGTAC 57.258 40.909 0.00 0.00 0.00 2.90
172 173 4.130857 TCAGAGCAAAACCGAATTGTACA 58.869 39.130 0.00 0.00 0.00 2.90
176 177 5.473504 AGAGCAAAACCGAATTGTACAGATT 59.526 36.000 0.00 0.00 0.00 2.40
177 178 5.460646 AGCAAAACCGAATTGTACAGATTG 58.539 37.500 0.00 0.00 0.00 2.67
179 180 5.563867 GCAAAACCGAATTGTACAGATTGGA 60.564 40.000 18.42 0.00 0.00 3.53
183 184 3.517602 CGAATTGTACAGATTGGACCGA 58.482 45.455 0.00 0.00 27.33 4.69
184 185 3.551890 CGAATTGTACAGATTGGACCGAG 59.448 47.826 0.00 0.00 27.33 4.63
185 186 3.543680 ATTGTACAGATTGGACCGAGG 57.456 47.619 0.00 0.00 27.33 4.63
186 187 1.191535 TGTACAGATTGGACCGAGGG 58.808 55.000 0.00 0.00 27.33 4.30
187 188 0.464452 GTACAGATTGGACCGAGGGG 59.536 60.000 0.00 0.00 40.11 4.79
188 189 1.335132 TACAGATTGGACCGAGGGGC 61.335 60.000 0.00 0.00 36.48 5.80
190 191 3.467226 GATTGGACCGAGGGGCGA 61.467 66.667 0.00 0.00 44.57 5.54
191 192 2.768344 ATTGGACCGAGGGGCGAT 60.768 61.111 0.00 0.00 44.57 4.58
192 193 2.325393 GATTGGACCGAGGGGCGATT 62.325 60.000 0.00 0.00 44.57 3.34
193 194 2.608970 ATTGGACCGAGGGGCGATTG 62.609 60.000 0.00 0.00 44.57 2.67
194 195 3.782443 GGACCGAGGGGCGATTGT 61.782 66.667 0.00 0.00 44.57 2.71
195 196 2.267961 GACCGAGGGGCGATTGTT 59.732 61.111 0.00 0.00 44.57 2.83
197 198 2.240162 GACCGAGGGGCGATTGTTCT 62.240 60.000 0.00 0.00 44.57 3.01
199 200 0.676782 CCGAGGGGCGATTGTTCTTT 60.677 55.000 0.00 0.00 44.57 2.52
200 201 0.447801 CGAGGGGCGATTGTTCTTTG 59.552 55.000 0.00 0.00 44.57 2.77
202 203 1.886542 GAGGGGCGATTGTTCTTTGTT 59.113 47.619 0.00 0.00 0.00 2.83
205 206 3.133901 AGGGGCGATTGTTCTTTGTTTTT 59.866 39.130 0.00 0.00 0.00 1.94
206 207 3.247411 GGGGCGATTGTTCTTTGTTTTTG 59.753 43.478 0.00 0.00 0.00 2.44
207 208 4.116238 GGGCGATTGTTCTTTGTTTTTGA 58.884 39.130 0.00 0.00 0.00 2.69
208 209 4.209080 GGGCGATTGTTCTTTGTTTTTGAG 59.791 41.667 0.00 0.00 0.00 3.02
209 210 5.040635 GGCGATTGTTCTTTGTTTTTGAGA 58.959 37.500 0.00 0.00 0.00 3.27
210 211 5.691754 GGCGATTGTTCTTTGTTTTTGAGAT 59.308 36.000 0.00 0.00 0.00 2.75
211 212 6.861055 GGCGATTGTTCTTTGTTTTTGAGATA 59.139 34.615 0.00 0.00 0.00 1.98
212 213 7.061094 GGCGATTGTTCTTTGTTTTTGAGATAG 59.939 37.037 0.00 0.00 0.00 2.08
213 214 7.409767 GCGATTGTTCTTTGTTTTTGAGATAGC 60.410 37.037 0.00 0.00 0.00 2.97
215 216 9.122613 GATTGTTCTTTGTTTTTGAGATAGCTC 57.877 33.333 0.00 0.00 41.67 4.09
226 227 4.254402 TGAGATAGCTCATCACTCATGC 57.746 45.455 6.59 0.00 45.88 4.06
229 230 1.402787 TAGCTCATCACTCATGCCGA 58.597 50.000 0.00 0.00 31.70 5.54
232 233 2.008543 GCTCATCACTCATGCCGAACA 61.009 52.381 0.00 0.00 31.70 3.18
233 234 1.931841 CTCATCACTCATGCCGAACAG 59.068 52.381 0.00 0.00 31.70 3.16
234 235 1.012086 CATCACTCATGCCGAACAGG 58.988 55.000 0.00 0.00 44.97 4.00
235 236 0.904649 ATCACTCATGCCGAACAGGA 59.095 50.000 0.00 0.00 45.00 3.86
236 237 0.904649 TCACTCATGCCGAACAGGAT 59.095 50.000 0.00 0.00 45.00 3.24
237 238 1.278985 TCACTCATGCCGAACAGGATT 59.721 47.619 0.00 0.00 45.00 3.01
238 239 2.499693 TCACTCATGCCGAACAGGATTA 59.500 45.455 0.00 0.00 45.00 1.75
239 240 2.868583 CACTCATGCCGAACAGGATTAG 59.131 50.000 0.00 0.00 45.00 1.73
240 241 2.501723 ACTCATGCCGAACAGGATTAGT 59.498 45.455 0.00 0.00 45.00 2.24
241 242 3.055094 ACTCATGCCGAACAGGATTAGTT 60.055 43.478 0.00 0.00 45.00 2.24
242 243 3.941483 CTCATGCCGAACAGGATTAGTTT 59.059 43.478 0.00 0.00 45.00 2.66
243 244 4.331968 TCATGCCGAACAGGATTAGTTTT 58.668 39.130 0.00 0.00 45.00 2.43
244 245 5.492895 TCATGCCGAACAGGATTAGTTTTA 58.507 37.500 0.00 0.00 45.00 1.52
245 246 6.119536 TCATGCCGAACAGGATTAGTTTTAT 58.880 36.000 0.00 0.00 45.00 1.40
246 247 6.601613 TCATGCCGAACAGGATTAGTTTTATT 59.398 34.615 0.00 0.00 45.00 1.40
247 248 6.827586 TGCCGAACAGGATTAGTTTTATTT 57.172 33.333 0.00 0.00 45.00 1.40
248 249 7.925043 TGCCGAACAGGATTAGTTTTATTTA 57.075 32.000 0.00 0.00 45.00 1.40
249 250 7.981142 TGCCGAACAGGATTAGTTTTATTTAG 58.019 34.615 0.00 0.00 45.00 1.85
250 251 7.825270 TGCCGAACAGGATTAGTTTTATTTAGA 59.175 33.333 0.00 0.00 45.00 2.10
251 252 8.837389 GCCGAACAGGATTAGTTTTATTTAGAT 58.163 33.333 0.00 0.00 45.00 1.98
262 263 6.546395 AGTTTTATTTAGATCAACTGCTGCG 58.454 36.000 0.00 0.00 0.00 5.18
263 264 4.536364 TTATTTAGATCAACTGCTGCGC 57.464 40.909 0.00 0.00 0.00 6.09
264 265 2.099141 TTTAGATCAACTGCTGCGCT 57.901 45.000 9.73 0.00 0.00 5.92
265 266 1.362768 TTAGATCAACTGCTGCGCTG 58.637 50.000 9.73 10.04 0.00 5.18
266 267 0.247460 TAGATCAACTGCTGCGCTGT 59.753 50.000 16.05 7.12 42.21 4.40
267 268 1.018226 AGATCAACTGCTGCGCTGTC 61.018 55.000 16.05 8.72 39.66 3.51
268 269 1.004080 ATCAACTGCTGCGCTGTCT 60.004 52.632 16.05 0.00 39.66 3.41
269 270 1.018226 ATCAACTGCTGCGCTGTCTC 61.018 55.000 16.05 0.00 39.66 3.36
270 271 1.957695 CAACTGCTGCGCTGTCTCA 60.958 57.895 16.05 4.66 39.66 3.27
271 272 1.667191 AACTGCTGCGCTGTCTCAG 60.667 57.895 16.05 15.65 39.66 3.35
272 273 2.092319 AACTGCTGCGCTGTCTCAGA 62.092 55.000 21.14 0.00 39.66 3.27
273 274 1.806351 CTGCTGCGCTGTCTCAGAG 60.806 63.158 16.05 0.00 34.50 3.35
274 275 2.210341 CTGCTGCGCTGTCTCAGAGA 62.210 60.000 16.05 0.00 33.20 3.10
275 276 1.516821 GCTGCGCTGTCTCAGAGAG 60.517 63.158 16.05 0.00 33.20 3.20
276 277 1.932011 GCTGCGCTGTCTCAGAGAGA 61.932 60.000 16.05 0.00 36.22 3.10
277 278 0.740149 CTGCGCTGTCTCAGAGAGAT 59.260 55.000 9.73 0.00 40.98 2.75
278 279 0.455005 TGCGCTGTCTCAGAGAGATG 59.545 55.000 9.73 0.00 40.98 2.90
279 280 0.248990 GCGCTGTCTCAGAGAGATGG 60.249 60.000 2.17 0.00 40.98 3.51
280 281 1.387539 CGCTGTCTCAGAGAGATGGA 58.612 55.000 2.17 0.00 40.98 3.41
281 282 1.747924 CGCTGTCTCAGAGAGATGGAA 59.252 52.381 2.17 0.00 40.98 3.53
282 283 2.361757 CGCTGTCTCAGAGAGATGGAAT 59.638 50.000 2.17 0.00 40.98 3.01
283 284 3.567585 CGCTGTCTCAGAGAGATGGAATA 59.432 47.826 2.17 0.00 40.98 1.75
284 285 4.037327 CGCTGTCTCAGAGAGATGGAATAA 59.963 45.833 2.17 0.00 40.98 1.40
285 286 5.451103 CGCTGTCTCAGAGAGATGGAATAAA 60.451 44.000 2.17 0.00 40.98 1.40
286 287 6.344500 GCTGTCTCAGAGAGATGGAATAAAA 58.656 40.000 2.17 0.00 40.98 1.52
287 288 6.820656 GCTGTCTCAGAGAGATGGAATAAAAA 59.179 38.462 2.17 0.00 40.98 1.94
288 289 7.498570 GCTGTCTCAGAGAGATGGAATAAAAAT 59.501 37.037 2.17 0.00 40.98 1.82
289 290 9.393512 CTGTCTCAGAGAGATGGAATAAAAATT 57.606 33.333 0.00 0.00 40.98 1.82
290 291 9.388506 TGTCTCAGAGAGATGGAATAAAAATTC 57.611 33.333 0.00 0.00 40.98 2.17
291 292 8.835439 GTCTCAGAGAGATGGAATAAAAATTCC 58.165 37.037 0.00 9.71 40.98 3.01
301 302 5.576447 GAATAAAAATTCCAAGGCGAGGA 57.424 39.130 0.00 0.00 0.00 3.71
302 303 5.582550 GAATAAAAATTCCAAGGCGAGGAG 58.417 41.667 1.40 0.00 36.33 3.69
303 304 2.879103 AAAATTCCAAGGCGAGGAGA 57.121 45.000 1.40 0.00 36.33 3.71
304 305 2.409948 AAATTCCAAGGCGAGGAGAG 57.590 50.000 1.40 0.00 36.33 3.20
305 306 1.573108 AATTCCAAGGCGAGGAGAGA 58.427 50.000 1.40 0.00 36.33 3.10
306 307 0.827368 ATTCCAAGGCGAGGAGAGAC 59.173 55.000 1.40 0.00 36.33 3.36
307 308 0.251832 TTCCAAGGCGAGGAGAGACT 60.252 55.000 1.40 0.00 36.33 3.24
308 309 0.251832 TCCAAGGCGAGGAGAGACTT 60.252 55.000 0.00 0.00 0.00 3.01
309 310 0.174617 CCAAGGCGAGGAGAGACTTC 59.825 60.000 0.00 0.00 0.00 3.01
310 311 1.181786 CAAGGCGAGGAGAGACTTCT 58.818 55.000 0.00 0.00 36.01 2.85
311 312 1.135141 CAAGGCGAGGAGAGACTTCTG 60.135 57.143 0.00 0.00 32.53 3.02
312 313 0.329931 AGGCGAGGAGAGACTTCTGA 59.670 55.000 0.00 0.00 32.53 3.27
313 314 0.738389 GGCGAGGAGAGACTTCTGAG 59.262 60.000 0.00 0.00 32.53 3.35
314 315 1.459450 GCGAGGAGAGACTTCTGAGT 58.541 55.000 0.00 0.00 39.32 3.41
315 316 1.132262 GCGAGGAGAGACTTCTGAGTG 59.868 57.143 0.00 0.00 35.88 3.51
316 317 1.742831 CGAGGAGAGACTTCTGAGTGG 59.257 57.143 0.00 0.00 35.88 4.00
317 318 1.476488 GAGGAGAGACTTCTGAGTGGC 59.524 57.143 0.00 0.00 35.88 5.01
318 319 1.077005 AGGAGAGACTTCTGAGTGGCT 59.923 52.381 0.00 0.00 35.88 4.75
319 320 2.310349 AGGAGAGACTTCTGAGTGGCTA 59.690 50.000 0.00 0.00 35.88 3.93
320 321 2.687935 GGAGAGACTTCTGAGTGGCTAG 59.312 54.545 0.00 0.00 35.88 3.42
321 322 2.099098 GAGAGACTTCTGAGTGGCTAGC 59.901 54.545 6.04 6.04 35.88 3.42
322 323 2.099405 GAGACTTCTGAGTGGCTAGCT 58.901 52.381 15.72 0.00 35.88 3.32
323 324 3.053991 AGAGACTTCTGAGTGGCTAGCTA 60.054 47.826 15.72 5.44 35.88 3.32
324 325 3.287222 AGACTTCTGAGTGGCTAGCTAG 58.713 50.000 16.84 16.84 35.88 3.42
325 326 2.223711 GACTTCTGAGTGGCTAGCTAGC 60.224 54.545 33.40 33.40 41.56 3.42
326 327 4.496756 GACTTCTGAGTGGCTAGCTAGCT 61.497 52.174 37.42 23.16 41.80 3.32
327 328 5.943695 GACTTCTGAGTGGCTAGCTAGCTT 61.944 50.000 37.42 25.70 41.80 3.74
328 329 7.671620 GACTTCTGAGTGGCTAGCTAGCTTC 62.672 52.000 37.42 30.42 41.80 3.86
337 338 4.385358 GCTAGCTAGCTTCTCTGTTCTT 57.615 45.455 33.71 0.00 45.62 2.52
338 339 5.508200 GCTAGCTAGCTTCTCTGTTCTTA 57.492 43.478 33.71 0.00 45.62 2.10
339 340 5.897050 GCTAGCTAGCTTCTCTGTTCTTAA 58.103 41.667 33.71 0.00 45.62 1.85
340 341 6.512297 GCTAGCTAGCTTCTCTGTTCTTAAT 58.488 40.000 33.71 0.00 45.62 1.40
341 342 7.653647 GCTAGCTAGCTTCTCTGTTCTTAATA 58.346 38.462 33.71 0.00 45.62 0.98
342 343 7.807907 GCTAGCTAGCTTCTCTGTTCTTAATAG 59.192 40.741 33.71 9.04 45.62 1.73
343 344 7.049799 AGCTAGCTTCTCTGTTCTTAATAGG 57.950 40.000 12.68 0.00 0.00 2.57
344 345 5.694458 GCTAGCTTCTCTGTTCTTAATAGGC 59.306 44.000 7.70 0.00 0.00 3.93
345 346 5.948742 AGCTTCTCTGTTCTTAATAGGCT 57.051 39.130 0.00 0.00 0.00 4.58
346 347 5.669477 AGCTTCTCTGTTCTTAATAGGCTG 58.331 41.667 0.00 0.00 0.00 4.85
347 348 4.813697 GCTTCTCTGTTCTTAATAGGCTGG 59.186 45.833 0.00 0.00 0.00 4.85
348 349 5.359194 TTCTCTGTTCTTAATAGGCTGGG 57.641 43.478 0.00 0.00 0.00 4.45
349 350 3.134804 TCTCTGTTCTTAATAGGCTGGGC 59.865 47.826 0.00 0.00 0.00 5.36
361 362 3.699894 CTGGGCCAGCAGAGTCGT 61.700 66.667 22.68 0.00 0.00 4.34
362 363 2.283604 TGGGCCAGCAGAGTCGTA 60.284 61.111 0.00 0.00 0.00 3.43
363 364 1.680522 CTGGGCCAGCAGAGTCGTAT 61.681 60.000 22.68 0.00 0.00 3.06
364 365 1.227380 GGGCCAGCAGAGTCGTATG 60.227 63.158 4.39 0.00 0.00 2.39
365 366 1.227380 GGCCAGCAGAGTCGTATGG 60.227 63.158 0.00 6.27 0.00 2.74
366 367 1.227380 GCCAGCAGAGTCGTATGGG 60.227 63.158 11.12 0.90 0.00 4.00
367 368 1.227380 CCAGCAGAGTCGTATGGGC 60.227 63.158 3.39 0.00 0.00 5.36
368 369 1.227380 CAGCAGAGTCGTATGGGCC 60.227 63.158 0.00 0.00 0.00 5.80
369 370 2.109181 GCAGAGTCGTATGGGCCC 59.891 66.667 17.59 17.59 0.00 5.80
370 371 2.822399 CAGAGTCGTATGGGCCCC 59.178 66.667 22.27 2.06 0.00 5.80
371 372 1.762460 CAGAGTCGTATGGGCCCCT 60.762 63.158 22.27 13.22 0.00 4.79
372 373 1.762460 AGAGTCGTATGGGCCCCTG 60.762 63.158 22.27 6.29 0.00 4.45
373 374 3.462199 GAGTCGTATGGGCCCCTGC 62.462 68.421 22.27 12.95 0.00 4.85
374 375 3.480133 GTCGTATGGGCCCCTGCT 61.480 66.667 22.27 3.63 37.74 4.24
375 376 3.161450 TCGTATGGGCCCCTGCTC 61.161 66.667 22.27 4.34 38.98 4.26
390 391 3.897856 CTCAGGATGGGCCCTAGG 58.102 66.667 25.70 0.06 37.37 3.02
391 392 2.448542 TCAGGATGGGCCCTAGGC 60.449 66.667 25.70 9.30 41.53 3.93
401 402 4.514577 CCCTAGGCGGTCGCACTG 62.515 72.222 17.21 5.83 44.11 3.66
410 411 3.857854 GTCGCACTGCTCGCCATG 61.858 66.667 0.00 0.00 0.00 3.66
437 438 4.809496 CGGCCCTGCTGCTGGATT 62.809 66.667 25.04 0.00 33.86 3.01
438 439 2.597340 GGCCCTGCTGCTGGATTA 59.403 61.111 25.04 0.00 0.00 1.75
439 440 1.527844 GGCCCTGCTGCTGGATTAG 60.528 63.158 25.04 10.57 0.00 1.73
440 441 1.225704 GCCCTGCTGCTGGATTAGT 59.774 57.895 25.04 0.00 0.00 2.24
441 442 0.394899 GCCCTGCTGCTGGATTAGTT 60.395 55.000 25.04 0.00 0.00 2.24
442 443 1.386533 CCCTGCTGCTGGATTAGTTG 58.613 55.000 25.04 4.45 0.00 3.16
443 444 1.386533 CCTGCTGCTGGATTAGTTGG 58.613 55.000 19.63 0.00 0.00 3.77
444 445 1.065199 CCTGCTGCTGGATTAGTTGGA 60.065 52.381 19.63 0.00 0.00 3.53
445 446 2.286872 CTGCTGCTGGATTAGTTGGAG 58.713 52.381 0.00 0.00 0.00 3.86
446 447 1.065199 TGCTGCTGGATTAGTTGGAGG 60.065 52.381 0.00 0.00 0.00 4.30
447 448 1.210478 GCTGCTGGATTAGTTGGAGGA 59.790 52.381 0.00 0.00 0.00 3.71
448 449 2.356125 GCTGCTGGATTAGTTGGAGGAA 60.356 50.000 0.00 0.00 0.00 3.36
449 450 3.539604 CTGCTGGATTAGTTGGAGGAAG 58.460 50.000 0.00 0.00 0.00 3.46
450 451 2.293170 GCTGGATTAGTTGGAGGAAGC 58.707 52.381 0.00 0.00 0.00 3.86
451 452 2.555199 CTGGATTAGTTGGAGGAAGCG 58.445 52.381 0.00 0.00 0.00 4.68
452 453 2.168521 CTGGATTAGTTGGAGGAAGCGA 59.831 50.000 0.00 0.00 0.00 4.93
453 454 2.168521 TGGATTAGTTGGAGGAAGCGAG 59.831 50.000 0.00 0.00 0.00 5.03
454 455 2.483889 GGATTAGTTGGAGGAAGCGAGG 60.484 54.545 0.00 0.00 0.00 4.63
455 456 0.249398 TTAGTTGGAGGAAGCGAGGC 59.751 55.000 0.00 0.00 0.00 4.70
456 457 0.614979 TAGTTGGAGGAAGCGAGGCT 60.615 55.000 0.00 0.00 42.56 4.58
457 458 0.614979 AGTTGGAGGAAGCGAGGCTA 60.615 55.000 0.00 0.00 38.25 3.93
458 459 0.460459 GTTGGAGGAAGCGAGGCTAC 60.460 60.000 0.00 0.00 38.25 3.58
459 460 0.614979 TTGGAGGAAGCGAGGCTACT 60.615 55.000 0.00 0.00 38.25 2.57
460 461 0.257905 TGGAGGAAGCGAGGCTACTA 59.742 55.000 0.00 0.00 38.25 1.82
461 462 1.341679 TGGAGGAAGCGAGGCTACTAA 60.342 52.381 0.00 0.00 38.25 2.24
462 463 1.755380 GGAGGAAGCGAGGCTACTAAA 59.245 52.381 0.00 0.00 38.25 1.85
463 464 2.167900 GGAGGAAGCGAGGCTACTAAAA 59.832 50.000 0.00 0.00 38.25 1.52
464 465 3.369157 GGAGGAAGCGAGGCTACTAAAAA 60.369 47.826 0.00 0.00 38.25 1.94
484 485 3.328535 AAAAAGCTGGAGGAAGGGAAA 57.671 42.857 0.00 0.00 0.00 3.13
485 486 2.593925 AAAGCTGGAGGAAGGGAAAG 57.406 50.000 0.00 0.00 0.00 2.62
486 487 0.701147 AAGCTGGAGGAAGGGAAAGG 59.299 55.000 0.00 0.00 0.00 3.11
487 488 0.476611 AGCTGGAGGAAGGGAAAGGT 60.477 55.000 0.00 0.00 0.00 3.50
488 489 0.322906 GCTGGAGGAAGGGAAAGGTG 60.323 60.000 0.00 0.00 0.00 4.00
489 490 0.322906 CTGGAGGAAGGGAAAGGTGC 60.323 60.000 0.00 0.00 0.00 5.01
490 491 1.377333 GGAGGAAGGGAAAGGTGCG 60.377 63.158 0.00 0.00 0.00 5.34
491 492 1.677552 GAGGAAGGGAAAGGTGCGA 59.322 57.895 0.00 0.00 0.00 5.10
492 493 0.036306 GAGGAAGGGAAAGGTGCGAA 59.964 55.000 0.00 0.00 0.00 4.70
493 494 0.698818 AGGAAGGGAAAGGTGCGAAT 59.301 50.000 0.00 0.00 0.00 3.34
494 495 0.811281 GGAAGGGAAAGGTGCGAATG 59.189 55.000 0.00 0.00 0.00 2.67
495 496 1.613255 GGAAGGGAAAGGTGCGAATGA 60.613 52.381 0.00 0.00 0.00 2.57
496 497 1.740025 GAAGGGAAAGGTGCGAATGAG 59.260 52.381 0.00 0.00 0.00 2.90
497 498 0.678048 AGGGAAAGGTGCGAATGAGC 60.678 55.000 0.00 0.00 37.71 4.26
498 499 0.678048 GGGAAAGGTGCGAATGAGCT 60.678 55.000 0.00 0.00 38.13 4.09
499 500 1.406887 GGGAAAGGTGCGAATGAGCTA 60.407 52.381 0.00 0.00 38.13 3.32
500 501 1.936547 GGAAAGGTGCGAATGAGCTAG 59.063 52.381 0.00 0.00 38.13 3.42
501 502 1.936547 GAAAGGTGCGAATGAGCTAGG 59.063 52.381 0.00 0.00 38.13 3.02
502 503 0.179000 AAGGTGCGAATGAGCTAGGG 59.821 55.000 0.00 0.00 38.13 3.53
503 504 1.889573 GGTGCGAATGAGCTAGGGC 60.890 63.158 0.00 0.00 38.13 5.19
504 505 2.106938 TGCGAATGAGCTAGGGCG 59.893 61.111 0.00 0.00 44.37 6.13
505 506 2.107141 GCGAATGAGCTAGGGCGT 59.893 61.111 0.00 0.00 44.37 5.68
506 507 1.521681 GCGAATGAGCTAGGGCGTT 60.522 57.895 0.00 0.00 44.37 4.84
507 508 1.766143 GCGAATGAGCTAGGGCGTTG 61.766 60.000 0.00 0.00 44.37 4.10
508 509 1.154205 CGAATGAGCTAGGGCGTTGG 61.154 60.000 0.00 0.00 44.37 3.77
509 510 0.107654 GAATGAGCTAGGGCGTTGGT 60.108 55.000 0.00 0.00 44.37 3.67
510 511 1.138266 GAATGAGCTAGGGCGTTGGTA 59.862 52.381 0.00 0.00 44.37 3.25
511 512 1.424638 ATGAGCTAGGGCGTTGGTAT 58.575 50.000 0.00 0.00 44.37 2.73
512 513 2.076207 TGAGCTAGGGCGTTGGTATA 57.924 50.000 0.00 0.00 44.37 1.47
513 514 1.684983 TGAGCTAGGGCGTTGGTATAC 59.315 52.381 0.00 0.00 44.37 1.47
514 515 1.000618 GAGCTAGGGCGTTGGTATACC 59.999 57.143 15.50 15.50 44.37 2.73
515 516 0.034476 GCTAGGGCGTTGGTATACCC 59.966 60.000 19.42 2.45 43.17 3.69
516 517 1.416243 CTAGGGCGTTGGTATACCCA 58.584 55.000 19.42 5.40 45.45 4.51
517 518 1.975680 CTAGGGCGTTGGTATACCCAT 59.024 52.381 19.42 3.59 44.74 4.00
518 519 0.472471 AGGGCGTTGGTATACCCATG 59.528 55.000 19.42 14.53 44.74 3.66
519 520 0.470766 GGGCGTTGGTATACCCATGA 59.529 55.000 19.42 0.00 44.74 3.07
520 521 1.589803 GGCGTTGGTATACCCATGAC 58.410 55.000 19.42 12.30 44.74 3.06
521 522 1.589803 GCGTTGGTATACCCATGACC 58.410 55.000 19.42 0.00 44.74 4.02
522 523 1.140252 GCGTTGGTATACCCATGACCT 59.860 52.381 19.42 0.00 44.74 3.85
523 524 2.420967 GCGTTGGTATACCCATGACCTT 60.421 50.000 19.42 0.00 44.74 3.50
524 525 3.181463 GCGTTGGTATACCCATGACCTTA 60.181 47.826 19.42 0.00 44.74 2.69
525 526 4.683942 GCGTTGGTATACCCATGACCTTAA 60.684 45.833 19.42 0.50 44.74 1.85
526 527 5.054477 CGTTGGTATACCCATGACCTTAAG 58.946 45.833 19.42 0.00 44.74 1.85
527 528 5.395990 CGTTGGTATACCCATGACCTTAAGT 60.396 44.000 19.42 0.00 44.74 2.24
528 529 6.420638 GTTGGTATACCCATGACCTTAAGTT 58.579 40.000 19.42 0.00 44.74 2.66
529 530 6.645884 TGGTATACCCATGACCTTAAGTTT 57.354 37.500 19.42 0.00 38.72 2.66
530 531 7.034967 TGGTATACCCATGACCTTAAGTTTT 57.965 36.000 19.42 0.00 38.72 2.43
531 532 7.471890 TGGTATACCCATGACCTTAAGTTTTT 58.528 34.615 19.42 0.00 38.72 1.94
532 533 8.613034 TGGTATACCCATGACCTTAAGTTTTTA 58.387 33.333 19.42 0.00 38.72 1.52
533 534 9.465199 GGTATACCCATGACCTTAAGTTTTTAA 57.535 33.333 11.17 0.00 0.00 1.52
542 543 8.439993 TGACCTTAAGTTTTTAATTTTTGGGC 57.560 30.769 0.97 0.00 0.00 5.36
543 544 8.047310 TGACCTTAAGTTTTTAATTTTTGGGCA 58.953 29.630 0.97 0.00 29.42 5.36
544 545 8.809468 ACCTTAAGTTTTTAATTTTTGGGCAA 57.191 26.923 0.97 0.00 0.00 4.52
545 546 9.244292 ACCTTAAGTTTTTAATTTTTGGGCAAA 57.756 25.926 0.97 0.00 0.00 3.68
550 551 9.935241 AAGTTTTTAATTTTTGGGCAAAACAAT 57.065 22.222 7.77 0.03 39.70 2.71
551 552 9.579768 AGTTTTTAATTTTTGGGCAAAACAATC 57.420 25.926 7.77 0.00 39.70 2.67
552 553 9.358872 GTTTTTAATTTTTGGGCAAAACAATCA 57.641 25.926 0.00 0.00 39.70 2.57
556 557 5.914085 TTTTTGGGCAAAACAATCATACG 57.086 34.783 0.00 0.00 39.70 3.06
589 591 9.753674 TCTAAAAGAATAATCAGGAACAATGGT 57.246 29.630 0.00 0.00 0.00 3.55
595 597 7.888021 AGAATAATCAGGAACAATGGTGTACAA 59.112 33.333 0.00 0.00 36.80 2.41
649 651 5.689514 TGCAAATACAAAATCTTGAACCACG 59.310 36.000 0.00 0.00 36.33 4.94
651 653 6.345723 GCAAATACAAAATCTTGAACCACGTG 60.346 38.462 9.08 9.08 36.33 4.49
658 660 2.925724 TCTTGAACCACGTGGAAATGT 58.074 42.857 40.21 15.74 38.94 2.71
664 666 6.243811 TGAACCACGTGGAAATGTAAATAC 57.756 37.500 40.21 15.52 38.94 1.89
670 672 8.794553 ACCACGTGGAAATGTAAATACAAAATA 58.205 29.630 40.21 0.00 37.99 1.40
700 706 1.677942 TTAAAACCCCACGTCCACAC 58.322 50.000 0.00 0.00 0.00 3.82
702 708 1.928714 AAAACCCCACGTCCACACCT 61.929 55.000 0.00 0.00 0.00 4.00
712 718 1.878102 CGTCCACACCTCCCTTCTTTG 60.878 57.143 0.00 0.00 0.00 2.77
717 723 3.435890 CCACACCTCCCTTCTTTGGTAAA 60.436 47.826 0.00 0.00 0.00 2.01
860 866 7.654022 TTTCCATTAATAGAAACCATGGTCC 57.346 36.000 20.07 13.38 36.53 4.46
923 929 6.850752 TTTGGAGGAAACAAACTCTTCTTT 57.149 33.333 0.00 0.00 33.26 2.52
983 989 0.173481 ACATCTCGACCATCACCGTG 59.827 55.000 0.00 0.00 0.00 4.94
1001 1007 4.058124 CCGTGATATCGACAATCAACCAT 58.942 43.478 12.53 0.00 35.23 3.55
1043 1049 2.042843 AATCCTCCTCCTCGCCGT 60.043 61.111 0.00 0.00 0.00 5.68
1117 1123 2.348888 CCCCAGTACGCGACCTTCT 61.349 63.158 15.93 0.00 0.00 2.85
1311 1317 0.992802 GCGAGATGAAGACCAACGTC 59.007 55.000 0.00 0.00 39.50 4.34
1320 1326 2.954753 GACCAACGTCGCCAAGCTG 61.955 63.158 0.00 0.00 0.00 4.24
1321 1327 3.726517 CCAACGTCGCCAAGCTGG 61.727 66.667 0.00 0.00 41.55 4.85
1581 1593 2.415893 GGGCAAGATCAAAACCATGTCG 60.416 50.000 0.00 0.00 0.00 4.35
1587 1599 2.198827 TCAAAACCATGTCGGCTGAT 57.801 45.000 0.00 0.00 39.03 2.90
1695 1708 6.088085 CGTGCACAACTTTGGATTTTATCTTC 59.912 38.462 18.64 0.00 0.00 2.87
1770 1786 8.877864 TTTGTGTTTCCAGTATCCTATGATTT 57.122 30.769 0.00 0.00 32.18 2.17
1771 1787 8.877864 TTGTGTTTCCAGTATCCTATGATTTT 57.122 30.769 0.00 0.00 32.18 1.82
1772 1788 8.877864 TGTGTTTCCAGTATCCTATGATTTTT 57.122 30.769 0.00 0.00 32.18 1.94
1773 1789 8.956426 TGTGTTTCCAGTATCCTATGATTTTTC 58.044 33.333 0.00 0.00 32.18 2.29
1795 1812 6.812879 TCTTAGTGAAGTGAATCGAGTACA 57.187 37.500 0.00 0.00 34.03 2.90
1804 1821 5.254901 AGTGAATCGAGTACAACTAGAGGT 58.745 41.667 0.00 0.00 33.47 3.85
1805 1822 5.711036 AGTGAATCGAGTACAACTAGAGGTT 59.289 40.000 0.00 0.00 33.47 3.50
1889 2375 2.677836 CAAAGGCAATCGATCGAGGAAA 59.322 45.455 23.84 0.00 0.00 3.13
1890 2376 2.691409 AGGCAATCGATCGAGGAAAA 57.309 45.000 23.84 0.00 0.00 2.29
1946 2432 2.593148 ACCCGTGCGTTGCAATGA 60.593 55.556 22.81 4.86 41.47 2.57
2060 4612 4.889409 ACCATCAAATTCTCACACACACTT 59.111 37.500 0.00 0.00 0.00 3.16
2245 6308 7.713750 ACAAGGATTCTTCTCATGCATTAATG 58.286 34.615 11.27 11.27 0.00 1.90
2399 6462 3.064207 TCATCCTAGACAAACGCAACAC 58.936 45.455 0.00 0.00 0.00 3.32
2531 6594 8.081633 CACCAACTGATAAAGAAAGCATGTAAA 58.918 33.333 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.069090 TTCTTTGAGCGCACGGTCT 59.931 52.632 21.13 0.00 42.49 3.85
4 5 1.204312 GTTCTTTGAGCGCACGGTC 59.796 57.895 11.47 14.83 42.37 4.79
5 6 2.251642 GGTTCTTTGAGCGCACGGT 61.252 57.895 11.47 0.00 0.00 4.83
7 8 1.626654 ATCGGTTCTTTGAGCGCACG 61.627 55.000 11.47 0.00 40.11 5.34
8 9 0.095417 GATCGGTTCTTTGAGCGCAC 59.905 55.000 11.47 3.13 40.11 5.34
10 11 1.706287 GGGATCGGTTCTTTGAGCGC 61.706 60.000 0.00 0.00 40.11 5.92
11 12 0.391130 TGGGATCGGTTCTTTGAGCG 60.391 55.000 0.00 0.00 41.53 5.03
13 14 3.055819 TCTCTTGGGATCGGTTCTTTGAG 60.056 47.826 0.00 0.00 0.00 3.02
14 15 2.903784 TCTCTTGGGATCGGTTCTTTGA 59.096 45.455 0.00 0.00 0.00 2.69
16 17 2.353803 CGTCTCTTGGGATCGGTTCTTT 60.354 50.000 0.00 0.00 0.00 2.52
17 18 1.204941 CGTCTCTTGGGATCGGTTCTT 59.795 52.381 0.00 0.00 0.00 2.52
18 19 0.818296 CGTCTCTTGGGATCGGTTCT 59.182 55.000 0.00 0.00 0.00 3.01
19 20 0.531200 ACGTCTCTTGGGATCGGTTC 59.469 55.000 0.00 0.00 0.00 3.62
20 21 0.974383 AACGTCTCTTGGGATCGGTT 59.026 50.000 0.00 0.00 0.00 4.44
22 23 0.460284 CCAACGTCTCTTGGGATCGG 60.460 60.000 0.00 0.00 37.62 4.18
27 28 1.376037 GGAGCCAACGTCTCTTGGG 60.376 63.158 6.16 0.00 41.12 4.12
28 29 0.036010 ATGGAGCCAACGTCTCTTGG 60.036 55.000 0.00 0.00 43.36 3.61
29 30 2.672961 TATGGAGCCAACGTCTCTTG 57.327 50.000 3.12 0.00 0.00 3.02
30 31 2.766263 TGATATGGAGCCAACGTCTCTT 59.234 45.455 3.12 0.00 0.00 2.85
32 33 2.890808 TGATATGGAGCCAACGTCTC 57.109 50.000 0.00 0.00 0.00 3.36
34 35 3.251004 GGAAATGATATGGAGCCAACGTC 59.749 47.826 0.00 0.00 0.00 4.34
35 36 3.214328 GGAAATGATATGGAGCCAACGT 58.786 45.455 0.00 0.00 0.00 3.99
37 38 5.596836 TTTGGAAATGATATGGAGCCAAC 57.403 39.130 0.00 0.00 34.04 3.77
38 39 6.213195 AGTTTTTGGAAATGATATGGAGCCAA 59.787 34.615 0.00 0.00 32.58 4.52
39 40 5.721000 AGTTTTTGGAAATGATATGGAGCCA 59.279 36.000 0.00 0.00 0.00 4.75
40 41 6.225981 AGTTTTTGGAAATGATATGGAGCC 57.774 37.500 0.00 0.00 0.00 4.70
41 42 9.087424 GTTTAGTTTTTGGAAATGATATGGAGC 57.913 33.333 0.00 0.00 0.00 4.70
48 49 9.588096 ACCTCTAGTTTAGTTTTTGGAAATGAT 57.412 29.630 0.00 0.00 0.00 2.45
49 50 8.990163 ACCTCTAGTTTAGTTTTTGGAAATGA 57.010 30.769 0.00 0.00 0.00 2.57
65 66 8.431910 TCACCTAGATGTTTTTACCTCTAGTT 57.568 34.615 13.11 1.37 36.86 2.24
66 67 7.363968 GCTCACCTAGATGTTTTTACCTCTAGT 60.364 40.741 13.11 3.64 36.86 2.57
68 69 6.405508 CGCTCACCTAGATGTTTTTACCTCTA 60.406 42.308 0.00 0.00 0.00 2.43
70 71 4.567159 CGCTCACCTAGATGTTTTTACCTC 59.433 45.833 0.00 0.00 0.00 3.85
71 72 4.222145 TCGCTCACCTAGATGTTTTTACCT 59.778 41.667 0.00 0.00 0.00 3.08
72 73 4.501071 TCGCTCACCTAGATGTTTTTACC 58.499 43.478 0.00 0.00 0.00 2.85
73 74 5.062308 CACTCGCTCACCTAGATGTTTTTAC 59.938 44.000 0.00 0.00 0.00 2.01
74 75 5.168569 CACTCGCTCACCTAGATGTTTTTA 58.831 41.667 0.00 0.00 0.00 1.52
75 76 3.997021 CACTCGCTCACCTAGATGTTTTT 59.003 43.478 0.00 0.00 0.00 1.94
78 79 1.478510 CCACTCGCTCACCTAGATGTT 59.521 52.381 0.00 0.00 0.00 2.71
79 80 1.107114 CCACTCGCTCACCTAGATGT 58.893 55.000 0.00 0.00 0.00 3.06
80 81 1.393603 TCCACTCGCTCACCTAGATG 58.606 55.000 0.00 0.00 0.00 2.90
81 82 2.145397 TTCCACTCGCTCACCTAGAT 57.855 50.000 0.00 0.00 0.00 1.98
82 83 1.819288 CTTTCCACTCGCTCACCTAGA 59.181 52.381 0.00 0.00 0.00 2.43
83 84 1.134965 CCTTTCCACTCGCTCACCTAG 60.135 57.143 0.00 0.00 0.00 3.02
84 85 0.895530 CCTTTCCACTCGCTCACCTA 59.104 55.000 0.00 0.00 0.00 3.08
85 86 0.832135 TCCTTTCCACTCGCTCACCT 60.832 55.000 0.00 0.00 0.00 4.00
86 87 0.034896 TTCCTTTCCACTCGCTCACC 59.965 55.000 0.00 0.00 0.00 4.02
87 88 1.878953 TTTCCTTTCCACTCGCTCAC 58.121 50.000 0.00 0.00 0.00 3.51
88 89 2.859165 ATTTCCTTTCCACTCGCTCA 57.141 45.000 0.00 0.00 0.00 4.26
89 90 4.254492 AGTAATTTCCTTTCCACTCGCTC 58.746 43.478 0.00 0.00 0.00 5.03
90 91 4.287766 AGTAATTTCCTTTCCACTCGCT 57.712 40.909 0.00 0.00 0.00 4.93
91 92 4.571176 CCTAGTAATTTCCTTTCCACTCGC 59.429 45.833 0.00 0.00 0.00 5.03
92 93 5.581085 CACCTAGTAATTTCCTTTCCACTCG 59.419 44.000 0.00 0.00 0.00 4.18
93 94 5.354513 GCACCTAGTAATTTCCTTTCCACTC 59.645 44.000 0.00 0.00 0.00 3.51
95 96 5.007682 TGCACCTAGTAATTTCCTTTCCAC 58.992 41.667 0.00 0.00 0.00 4.02
96 97 5.007682 GTGCACCTAGTAATTTCCTTTCCA 58.992 41.667 5.22 0.00 0.00 3.53
98 99 6.877322 TGTAGTGCACCTAGTAATTTCCTTTC 59.123 38.462 14.63 0.00 0.00 2.62
99 100 6.775708 TGTAGTGCACCTAGTAATTTCCTTT 58.224 36.000 14.63 0.00 0.00 3.11
101 102 6.561519 ATGTAGTGCACCTAGTAATTTCCT 57.438 37.500 14.63 0.00 0.00 3.36
105 106 8.621286 GCATAAAATGTAGTGCACCTAGTAATT 58.379 33.333 14.63 3.97 37.52 1.40
107 108 7.279981 CAGCATAAAATGTAGTGCACCTAGTAA 59.720 37.037 14.63 0.00 39.94 2.24
109 110 5.586243 CAGCATAAAATGTAGTGCACCTAGT 59.414 40.000 14.63 0.00 39.94 2.57
111 112 5.353956 CACAGCATAAAATGTAGTGCACCTA 59.646 40.000 14.63 2.41 39.94 3.08
112 113 4.156556 CACAGCATAAAATGTAGTGCACCT 59.843 41.667 14.63 3.48 39.94 4.00
113 114 4.414852 CACAGCATAAAATGTAGTGCACC 58.585 43.478 14.63 0.00 39.94 5.01
117 118 5.097529 CCTTGCACAGCATAAAATGTAGTG 58.902 41.667 0.00 8.51 38.76 2.74
118 119 5.009631 TCCTTGCACAGCATAAAATGTAGT 58.990 37.500 0.00 0.00 38.76 2.73
119 120 5.565592 TCCTTGCACAGCATAAAATGTAG 57.434 39.130 0.00 0.00 38.76 2.74
120 121 5.973899 TTCCTTGCACAGCATAAAATGTA 57.026 34.783 0.00 0.00 38.76 2.29
121 122 4.870123 TTCCTTGCACAGCATAAAATGT 57.130 36.364 0.00 0.00 38.76 2.71
122 123 6.256321 GGTTATTCCTTGCACAGCATAAAATG 59.744 38.462 0.00 0.00 38.76 2.32
125 126 4.769488 TGGTTATTCCTTGCACAGCATAAA 59.231 37.500 0.00 0.00 38.76 1.40
126 127 4.339748 TGGTTATTCCTTGCACAGCATAA 58.660 39.130 0.00 0.00 38.76 1.90
127 128 3.961849 TGGTTATTCCTTGCACAGCATA 58.038 40.909 0.00 0.00 38.76 3.14
130 131 3.193267 TGATTGGTTATTCCTTGCACAGC 59.807 43.478 0.00 0.00 37.07 4.40
131 132 4.701651 TCTGATTGGTTATTCCTTGCACAG 59.298 41.667 0.00 0.00 37.07 3.66
132 133 4.661222 TCTGATTGGTTATTCCTTGCACA 58.339 39.130 0.00 0.00 37.07 4.57
133 134 4.439289 GCTCTGATTGGTTATTCCTTGCAC 60.439 45.833 0.00 0.00 37.07 4.57
134 135 3.696051 GCTCTGATTGGTTATTCCTTGCA 59.304 43.478 0.00 0.00 37.07 4.08
135 136 3.696051 TGCTCTGATTGGTTATTCCTTGC 59.304 43.478 0.00 0.00 37.07 4.01
136 137 5.902613 TTGCTCTGATTGGTTATTCCTTG 57.097 39.130 0.00 0.00 37.07 3.61
137 138 6.295292 GGTTTTGCTCTGATTGGTTATTCCTT 60.295 38.462 0.00 0.00 37.07 3.36
139 140 5.410924 GGTTTTGCTCTGATTGGTTATTCC 58.589 41.667 0.00 0.00 0.00 3.01
140 141 5.095490 CGGTTTTGCTCTGATTGGTTATTC 58.905 41.667 0.00 0.00 0.00 1.75
141 142 4.764823 TCGGTTTTGCTCTGATTGGTTATT 59.235 37.500 0.00 0.00 0.00 1.40
143 144 3.745799 TCGGTTTTGCTCTGATTGGTTA 58.254 40.909 0.00 0.00 0.00 2.85
144 145 2.582052 TCGGTTTTGCTCTGATTGGTT 58.418 42.857 0.00 0.00 0.00 3.67
145 146 2.270352 TCGGTTTTGCTCTGATTGGT 57.730 45.000 0.00 0.00 0.00 3.67
146 147 3.855689 ATTCGGTTTTGCTCTGATTGG 57.144 42.857 0.00 0.00 0.00 3.16
147 148 4.549458 ACAATTCGGTTTTGCTCTGATTG 58.451 39.130 0.00 0.00 0.00 2.67
149 150 4.759693 TGTACAATTCGGTTTTGCTCTGAT 59.240 37.500 0.00 0.00 0.00 2.90
150 151 4.130857 TGTACAATTCGGTTTTGCTCTGA 58.869 39.130 0.00 0.00 0.00 3.27
151 152 4.213270 TCTGTACAATTCGGTTTTGCTCTG 59.787 41.667 0.00 0.00 0.00 3.35
152 153 4.385825 TCTGTACAATTCGGTTTTGCTCT 58.614 39.130 0.00 0.00 0.00 4.09
154 155 5.460646 CAATCTGTACAATTCGGTTTTGCT 58.539 37.500 0.00 0.00 0.00 3.91
155 156 4.621034 CCAATCTGTACAATTCGGTTTTGC 59.379 41.667 0.00 0.00 0.00 3.68
156 157 5.856455 GTCCAATCTGTACAATTCGGTTTTG 59.144 40.000 0.00 0.00 0.00 2.44
159 160 4.007659 GGTCCAATCTGTACAATTCGGTT 58.992 43.478 0.00 0.00 0.00 4.44
160 161 3.606687 GGTCCAATCTGTACAATTCGGT 58.393 45.455 0.00 0.00 0.00 4.69
161 162 2.607635 CGGTCCAATCTGTACAATTCGG 59.392 50.000 0.00 5.36 0.00 4.30
162 163 3.517602 TCGGTCCAATCTGTACAATTCG 58.482 45.455 0.00 1.27 0.00 3.34
164 165 3.370527 CCCTCGGTCCAATCTGTACAATT 60.371 47.826 0.00 0.00 0.00 2.32
167 168 1.191535 CCCTCGGTCCAATCTGTACA 58.808 55.000 0.00 0.00 0.00 2.90
169 170 1.335132 GCCCCTCGGTCCAATCTGTA 61.335 60.000 0.00 0.00 0.00 2.74
170 171 2.670148 GCCCCTCGGTCCAATCTGT 61.670 63.158 0.00 0.00 0.00 3.41
171 172 2.190578 GCCCCTCGGTCCAATCTG 59.809 66.667 0.00 0.00 0.00 2.90
172 173 3.470888 CGCCCCTCGGTCCAATCT 61.471 66.667 0.00 0.00 33.78 2.40
176 177 3.781307 CAATCGCCCCTCGGTCCA 61.781 66.667 0.00 0.00 39.05 4.02
177 178 3.325201 AACAATCGCCCCTCGGTCC 62.325 63.158 0.00 0.00 39.05 4.46
179 180 1.838073 AAGAACAATCGCCCCTCGGT 61.838 55.000 0.00 0.00 39.05 4.69
183 184 1.995376 AACAAAGAACAATCGCCCCT 58.005 45.000 0.00 0.00 0.00 4.79
184 185 2.812358 AAACAAAGAACAATCGCCCC 57.188 45.000 0.00 0.00 0.00 5.80
185 186 4.116238 TCAAAAACAAAGAACAATCGCCC 58.884 39.130 0.00 0.00 0.00 6.13
186 187 5.040635 TCTCAAAAACAAAGAACAATCGCC 58.959 37.500 0.00 0.00 0.00 5.54
187 188 6.753897 ATCTCAAAAACAAAGAACAATCGC 57.246 33.333 0.00 0.00 0.00 4.58
188 189 7.805071 AGCTATCTCAAAAACAAAGAACAATCG 59.195 33.333 0.00 0.00 0.00 3.34
190 191 8.632679 TGAGCTATCTCAAAAACAAAGAACAAT 58.367 29.630 0.00 0.00 45.69 2.71
191 192 7.995289 TGAGCTATCTCAAAAACAAAGAACAA 58.005 30.769 0.00 0.00 45.69 2.83
192 193 7.566760 TGAGCTATCTCAAAAACAAAGAACA 57.433 32.000 0.00 0.00 45.69 3.18
206 207 3.587923 GGCATGAGTGATGAGCTATCTC 58.412 50.000 0.00 0.00 39.78 2.75
207 208 2.029200 CGGCATGAGTGATGAGCTATCT 60.029 50.000 0.00 0.00 36.71 1.98
208 209 2.029560 TCGGCATGAGTGATGAGCTATC 60.030 50.000 0.00 0.00 33.31 2.08
209 210 1.966354 TCGGCATGAGTGATGAGCTAT 59.034 47.619 0.00 0.00 33.31 2.97
210 211 1.402787 TCGGCATGAGTGATGAGCTA 58.597 50.000 0.00 0.00 33.31 3.32
211 212 0.538584 TTCGGCATGAGTGATGAGCT 59.461 50.000 0.00 0.00 33.31 4.09
212 213 0.654683 GTTCGGCATGAGTGATGAGC 59.345 55.000 0.00 0.00 33.31 4.26
213 214 1.931841 CTGTTCGGCATGAGTGATGAG 59.068 52.381 0.00 0.00 33.31 2.90
215 216 1.012086 CCTGTTCGGCATGAGTGATG 58.988 55.000 0.00 0.00 34.84 3.07
216 217 0.904649 TCCTGTTCGGCATGAGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
217 218 0.904649 ATCCTGTTCGGCATGAGTGA 59.095 50.000 0.00 0.00 0.00 3.41
218 219 1.742761 AATCCTGTTCGGCATGAGTG 58.257 50.000 0.00 0.00 0.00 3.51
220 221 3.185246 ACTAATCCTGTTCGGCATGAG 57.815 47.619 0.00 0.00 0.00 2.90
221 222 3.627395 AACTAATCCTGTTCGGCATGA 57.373 42.857 0.00 0.00 0.00 3.07
222 223 4.701956 AAAACTAATCCTGTTCGGCATG 57.298 40.909 0.00 0.00 0.00 4.06
223 224 7.404671 AAATAAAACTAATCCTGTTCGGCAT 57.595 32.000 0.00 0.00 0.00 4.40
224 225 6.827586 AAATAAAACTAATCCTGTTCGGCA 57.172 33.333 0.00 0.00 0.00 5.69
225 226 8.205131 TCTAAATAAAACTAATCCTGTTCGGC 57.795 34.615 0.00 0.00 0.00 5.54
236 237 8.175069 CGCAGCAGTTGATCTAAATAAAACTAA 58.825 33.333 0.00 0.00 30.20 2.24
237 238 7.684670 CGCAGCAGTTGATCTAAATAAAACTA 58.315 34.615 0.00 0.00 30.20 2.24
238 239 6.546395 CGCAGCAGTTGATCTAAATAAAACT 58.454 36.000 0.00 0.00 0.00 2.66
239 240 6.780944 CGCAGCAGTTGATCTAAATAAAAC 57.219 37.500 0.00 0.00 0.00 2.43
257 258 1.932011 TCTCTCTGAGACAGCGCAGC 61.932 60.000 11.47 0.00 44.32 5.25
258 259 0.740149 ATCTCTCTGAGACAGCGCAG 59.260 55.000 11.47 3.33 41.76 5.18
259 260 0.455005 CATCTCTCTGAGACAGCGCA 59.545 55.000 11.47 0.00 41.76 6.09
260 261 0.248990 CCATCTCTCTGAGACAGCGC 60.249 60.000 2.58 0.00 41.76 5.92
261 262 1.387539 TCCATCTCTCTGAGACAGCG 58.612 55.000 2.58 0.00 41.76 5.18
262 263 5.528043 TTATTCCATCTCTCTGAGACAGC 57.472 43.478 2.58 0.00 41.76 4.40
263 264 8.961294 ATTTTTATTCCATCTCTCTGAGACAG 57.039 34.615 2.58 0.00 41.76 3.51
264 265 9.388506 GAATTTTTATTCCATCTCTCTGAGACA 57.611 33.333 2.58 0.00 41.76 3.41
279 280 5.357032 TCTCCTCGCCTTGGAATTTTTATTC 59.643 40.000 0.00 0.00 32.61 1.75
280 281 5.261216 TCTCCTCGCCTTGGAATTTTTATT 58.739 37.500 0.00 0.00 32.61 1.40
281 282 4.855340 TCTCCTCGCCTTGGAATTTTTAT 58.145 39.130 0.00 0.00 32.61 1.40
282 283 4.019681 TCTCTCCTCGCCTTGGAATTTTTA 60.020 41.667 0.00 0.00 32.61 1.52
283 284 3.084786 CTCTCCTCGCCTTGGAATTTTT 58.915 45.455 0.00 0.00 32.61 1.94
284 285 2.305927 TCTCTCCTCGCCTTGGAATTTT 59.694 45.455 0.00 0.00 32.61 1.82
285 286 1.909302 TCTCTCCTCGCCTTGGAATTT 59.091 47.619 0.00 0.00 32.61 1.82
286 287 1.208293 GTCTCTCCTCGCCTTGGAATT 59.792 52.381 0.00 0.00 32.61 2.17
287 288 0.827368 GTCTCTCCTCGCCTTGGAAT 59.173 55.000 0.00 0.00 32.61 3.01
288 289 0.251832 AGTCTCTCCTCGCCTTGGAA 60.252 55.000 0.00 0.00 32.61 3.53
289 290 0.251832 AAGTCTCTCCTCGCCTTGGA 60.252 55.000 0.00 0.00 0.00 3.53
290 291 0.174617 GAAGTCTCTCCTCGCCTTGG 59.825 60.000 0.00 0.00 0.00 3.61
291 292 1.135141 CAGAAGTCTCTCCTCGCCTTG 60.135 57.143 0.00 0.00 0.00 3.61
292 293 1.181786 CAGAAGTCTCTCCTCGCCTT 58.818 55.000 0.00 0.00 0.00 4.35
293 294 0.329931 TCAGAAGTCTCTCCTCGCCT 59.670 55.000 0.00 0.00 0.00 5.52
294 295 0.738389 CTCAGAAGTCTCTCCTCGCC 59.262 60.000 0.00 0.00 0.00 5.54
295 296 1.132262 CACTCAGAAGTCTCTCCTCGC 59.868 57.143 0.00 0.00 31.71 5.03
296 297 1.742831 CCACTCAGAAGTCTCTCCTCG 59.257 57.143 0.00 0.00 31.71 4.63
297 298 1.476488 GCCACTCAGAAGTCTCTCCTC 59.524 57.143 0.00 0.00 31.71 3.71
298 299 1.077005 AGCCACTCAGAAGTCTCTCCT 59.923 52.381 0.00 0.00 31.71 3.69
299 300 1.555967 AGCCACTCAGAAGTCTCTCC 58.444 55.000 0.00 0.00 31.71 3.71
300 301 2.099098 GCTAGCCACTCAGAAGTCTCTC 59.901 54.545 2.29 0.00 31.71 3.20
301 302 2.099405 GCTAGCCACTCAGAAGTCTCT 58.901 52.381 2.29 0.00 31.71 3.10
302 303 2.099405 AGCTAGCCACTCAGAAGTCTC 58.901 52.381 12.13 0.00 31.71 3.36
303 304 2.230130 AGCTAGCCACTCAGAAGTCT 57.770 50.000 12.13 0.00 31.71 3.24
304 305 2.223711 GCTAGCTAGCCACTCAGAAGTC 60.224 54.545 31.67 2.60 43.39 3.01
305 306 1.754226 GCTAGCTAGCCACTCAGAAGT 59.246 52.381 31.67 0.00 43.39 3.01
306 307 2.507339 GCTAGCTAGCCACTCAGAAG 57.493 55.000 31.67 0.59 43.39 2.85
317 318 8.296713 CCTATTAAGAACAGAGAAGCTAGCTAG 58.703 40.741 19.70 16.84 0.00 3.42
318 319 7.255660 GCCTATTAAGAACAGAGAAGCTAGCTA 60.256 40.741 19.70 0.00 0.00 3.32
319 320 6.462347 GCCTATTAAGAACAGAGAAGCTAGCT 60.462 42.308 12.68 12.68 0.00 3.32
320 321 5.694458 GCCTATTAAGAACAGAGAAGCTAGC 59.306 44.000 6.62 6.62 0.00 3.42
321 322 6.922957 CAGCCTATTAAGAACAGAGAAGCTAG 59.077 42.308 0.00 0.00 0.00 3.42
322 323 6.183360 CCAGCCTATTAAGAACAGAGAAGCTA 60.183 42.308 0.00 0.00 0.00 3.32
323 324 5.396213 CCAGCCTATTAAGAACAGAGAAGCT 60.396 44.000 0.00 0.00 0.00 3.74
324 325 4.813697 CCAGCCTATTAAGAACAGAGAAGC 59.186 45.833 0.00 0.00 0.00 3.86
325 326 5.363939 CCCAGCCTATTAAGAACAGAGAAG 58.636 45.833 0.00 0.00 0.00 2.85
326 327 4.384208 GCCCAGCCTATTAAGAACAGAGAA 60.384 45.833 0.00 0.00 0.00 2.87
327 328 3.134804 GCCCAGCCTATTAAGAACAGAGA 59.865 47.826 0.00 0.00 0.00 3.10
328 329 3.471680 GCCCAGCCTATTAAGAACAGAG 58.528 50.000 0.00 0.00 0.00 3.35
329 330 2.172717 GGCCCAGCCTATTAAGAACAGA 59.827 50.000 0.00 0.00 46.69 3.41
330 331 2.576615 GGCCCAGCCTATTAAGAACAG 58.423 52.381 0.00 0.00 46.69 3.16
331 332 2.729028 GGCCCAGCCTATTAAGAACA 57.271 50.000 0.00 0.00 46.69 3.18
344 345 1.680522 ATACGACTCTGCTGGCCCAG 61.681 60.000 6.32 6.32 34.12 4.45
345 346 1.685765 ATACGACTCTGCTGGCCCA 60.686 57.895 0.00 0.00 0.00 5.36
346 347 1.227380 CATACGACTCTGCTGGCCC 60.227 63.158 0.00 0.00 0.00 5.80
347 348 1.227380 CCATACGACTCTGCTGGCC 60.227 63.158 0.00 0.00 0.00 5.36
348 349 1.227380 CCCATACGACTCTGCTGGC 60.227 63.158 0.00 0.00 0.00 4.85
349 350 1.227380 GCCCATACGACTCTGCTGG 60.227 63.158 0.00 0.00 0.00 4.85
350 351 1.227380 GGCCCATACGACTCTGCTG 60.227 63.158 0.00 0.00 0.00 4.41
351 352 2.435693 GGGCCCATACGACTCTGCT 61.436 63.158 19.95 0.00 0.00 4.24
352 353 2.109181 GGGCCCATACGACTCTGC 59.891 66.667 19.95 0.00 0.00 4.26
353 354 1.762460 AGGGGCCCATACGACTCTG 60.762 63.158 27.72 0.00 0.00 3.35
354 355 1.762460 CAGGGGCCCATACGACTCT 60.762 63.158 27.72 5.45 0.00 3.24
355 356 2.822399 CAGGGGCCCATACGACTC 59.178 66.667 27.72 2.59 0.00 3.36
356 357 3.480133 GCAGGGGCCCATACGACT 61.480 66.667 27.72 7.22 0.00 4.18
357 358 3.462199 GAGCAGGGGCCCATACGAC 62.462 68.421 27.72 7.66 42.56 4.34
358 359 3.161450 GAGCAGGGGCCCATACGA 61.161 66.667 27.72 0.00 42.56 3.43
359 360 3.466791 CTGAGCAGGGGCCCATACG 62.467 68.421 27.72 6.79 42.56 3.06
360 361 2.512896 CTGAGCAGGGGCCCATAC 59.487 66.667 27.72 12.53 42.56 2.39
361 362 2.773918 CCTGAGCAGGGGCCCATA 60.774 66.667 27.72 0.00 44.87 2.74
370 371 1.766625 CTAGGGCCCATCCTGAGCAG 61.767 65.000 27.56 2.31 37.75 4.24
371 372 1.767672 CTAGGGCCCATCCTGAGCA 60.768 63.158 27.56 0.00 37.75 4.26
372 373 2.524204 CCTAGGGCCCATCCTGAGC 61.524 68.421 27.56 0.00 37.75 4.26
373 374 2.524204 GCCTAGGGCCCATCCTGAG 61.524 68.421 27.56 10.54 44.06 3.35
374 375 2.448542 GCCTAGGGCCCATCCTGA 60.449 66.667 27.56 0.00 44.06 3.86
384 385 4.514577 CAGTGCGACCGCCTAGGG 62.515 72.222 11.72 0.14 46.96 3.53
386 387 4.135153 AGCAGTGCGACCGCCTAG 62.135 66.667 10.00 2.66 41.09 3.02
387 388 4.129737 GAGCAGTGCGACCGCCTA 62.130 66.667 10.00 0.00 41.09 3.93
393 394 3.857854 CATGGCGAGCAGTGCGAC 61.858 66.667 10.00 7.36 37.28 5.19
420 421 3.405093 TAATCCAGCAGCAGGGCCG 62.405 63.158 3.59 0.00 0.00 6.13
421 422 1.527844 CTAATCCAGCAGCAGGGCC 60.528 63.158 3.59 0.00 0.00 5.80
422 423 0.394899 AACTAATCCAGCAGCAGGGC 60.395 55.000 3.59 0.00 0.00 5.19
423 424 1.386533 CAACTAATCCAGCAGCAGGG 58.613 55.000 3.59 0.00 0.00 4.45
424 425 1.065199 TCCAACTAATCCAGCAGCAGG 60.065 52.381 0.00 0.00 0.00 4.85
425 426 2.286872 CTCCAACTAATCCAGCAGCAG 58.713 52.381 0.00 0.00 0.00 4.24
426 427 1.065199 CCTCCAACTAATCCAGCAGCA 60.065 52.381 0.00 0.00 0.00 4.41
427 428 1.210478 TCCTCCAACTAATCCAGCAGC 59.790 52.381 0.00 0.00 0.00 5.25
428 429 3.539604 CTTCCTCCAACTAATCCAGCAG 58.460 50.000 0.00 0.00 0.00 4.24
429 430 2.356125 GCTTCCTCCAACTAATCCAGCA 60.356 50.000 0.00 0.00 0.00 4.41
430 431 2.293170 GCTTCCTCCAACTAATCCAGC 58.707 52.381 0.00 0.00 0.00 4.85
431 432 2.168521 TCGCTTCCTCCAACTAATCCAG 59.831 50.000 0.00 0.00 0.00 3.86
432 433 2.168521 CTCGCTTCCTCCAACTAATCCA 59.831 50.000 0.00 0.00 0.00 3.41
433 434 2.483889 CCTCGCTTCCTCCAACTAATCC 60.484 54.545 0.00 0.00 0.00 3.01
434 435 2.827652 CCTCGCTTCCTCCAACTAATC 58.172 52.381 0.00 0.00 0.00 1.75
435 436 1.134371 GCCTCGCTTCCTCCAACTAAT 60.134 52.381 0.00 0.00 0.00 1.73
436 437 0.249398 GCCTCGCTTCCTCCAACTAA 59.751 55.000 0.00 0.00 0.00 2.24
437 438 0.614979 AGCCTCGCTTCCTCCAACTA 60.615 55.000 0.00 0.00 33.89 2.24
438 439 0.614979 TAGCCTCGCTTCCTCCAACT 60.615 55.000 0.00 0.00 40.44 3.16
439 440 0.460459 GTAGCCTCGCTTCCTCCAAC 60.460 60.000 0.00 0.00 40.44 3.77
440 441 0.614979 AGTAGCCTCGCTTCCTCCAA 60.615 55.000 0.00 0.00 40.44 3.53
441 442 0.257905 TAGTAGCCTCGCTTCCTCCA 59.742 55.000 0.00 0.00 40.44 3.86
442 443 1.400737 TTAGTAGCCTCGCTTCCTCC 58.599 55.000 0.00 0.00 40.44 4.30
443 444 3.521947 TTTTAGTAGCCTCGCTTCCTC 57.478 47.619 0.00 0.00 40.44 3.71
444 445 3.975168 TTTTTAGTAGCCTCGCTTCCT 57.025 42.857 0.00 0.00 40.44 3.36
464 465 3.234353 CTTTCCCTTCCTCCAGCTTTTT 58.766 45.455 0.00 0.00 0.00 1.94
465 466 2.491640 CCTTTCCCTTCCTCCAGCTTTT 60.492 50.000 0.00 0.00 0.00 2.27
466 467 1.076187 CCTTTCCCTTCCTCCAGCTTT 59.924 52.381 0.00 0.00 0.00 3.51
467 468 0.701147 CCTTTCCCTTCCTCCAGCTT 59.299 55.000 0.00 0.00 0.00 3.74
468 469 0.476611 ACCTTTCCCTTCCTCCAGCT 60.477 55.000 0.00 0.00 0.00 4.24
469 470 0.322906 CACCTTTCCCTTCCTCCAGC 60.323 60.000 0.00 0.00 0.00 4.85
470 471 0.322906 GCACCTTTCCCTTCCTCCAG 60.323 60.000 0.00 0.00 0.00 3.86
471 472 1.767692 GCACCTTTCCCTTCCTCCA 59.232 57.895 0.00 0.00 0.00 3.86
472 473 1.377333 CGCACCTTTCCCTTCCTCC 60.377 63.158 0.00 0.00 0.00 4.30
473 474 0.036306 TTCGCACCTTTCCCTTCCTC 59.964 55.000 0.00 0.00 0.00 3.71
474 475 0.698818 ATTCGCACCTTTCCCTTCCT 59.301 50.000 0.00 0.00 0.00 3.36
475 476 0.811281 CATTCGCACCTTTCCCTTCC 59.189 55.000 0.00 0.00 0.00 3.46
476 477 1.740025 CTCATTCGCACCTTTCCCTTC 59.260 52.381 0.00 0.00 0.00 3.46
477 478 1.826385 CTCATTCGCACCTTTCCCTT 58.174 50.000 0.00 0.00 0.00 3.95
478 479 0.678048 GCTCATTCGCACCTTTCCCT 60.678 55.000 0.00 0.00 0.00 4.20
479 480 0.678048 AGCTCATTCGCACCTTTCCC 60.678 55.000 0.00 0.00 0.00 3.97
480 481 1.936547 CTAGCTCATTCGCACCTTTCC 59.063 52.381 0.00 0.00 0.00 3.13
481 482 1.936547 CCTAGCTCATTCGCACCTTTC 59.063 52.381 0.00 0.00 0.00 2.62
482 483 1.407437 CCCTAGCTCATTCGCACCTTT 60.407 52.381 0.00 0.00 0.00 3.11
483 484 0.179000 CCCTAGCTCATTCGCACCTT 59.821 55.000 0.00 0.00 0.00 3.50
484 485 1.826024 CCCTAGCTCATTCGCACCT 59.174 57.895 0.00 0.00 0.00 4.00
485 486 1.889573 GCCCTAGCTCATTCGCACC 60.890 63.158 0.00 0.00 35.50 5.01
486 487 2.240500 CGCCCTAGCTCATTCGCAC 61.241 63.158 0.00 0.00 36.60 5.34
487 488 2.106938 CGCCCTAGCTCATTCGCA 59.893 61.111 0.00 0.00 36.60 5.10
488 489 1.521681 AACGCCCTAGCTCATTCGC 60.522 57.895 0.00 0.00 36.60 4.70
489 490 1.154205 CCAACGCCCTAGCTCATTCG 61.154 60.000 0.00 0.00 36.60 3.34
490 491 0.107654 ACCAACGCCCTAGCTCATTC 60.108 55.000 0.00 0.00 36.60 2.67
491 492 1.200519 TACCAACGCCCTAGCTCATT 58.799 50.000 0.00 0.00 36.60 2.57
492 493 1.424638 ATACCAACGCCCTAGCTCAT 58.575 50.000 0.00 0.00 36.60 2.90
493 494 1.684983 GTATACCAACGCCCTAGCTCA 59.315 52.381 0.00 0.00 36.60 4.26
494 495 1.000618 GGTATACCAACGCCCTAGCTC 59.999 57.143 17.44 0.00 34.33 4.09
495 496 1.046204 GGTATACCAACGCCCTAGCT 58.954 55.000 17.44 0.00 34.33 3.32
496 497 0.034476 GGGTATACCAACGCCCTAGC 59.966 60.000 23.33 0.00 39.85 3.42
507 508 7.949690 AAAAACTTAAGGTCATGGGTATACC 57.050 36.000 13.99 13.99 40.81 2.73
516 517 9.062524 GCCCAAAAATTAAAAACTTAAGGTCAT 57.937 29.630 7.53 0.00 0.00 3.06
517 518 8.047310 TGCCCAAAAATTAAAAACTTAAGGTCA 58.953 29.630 7.53 0.00 0.00 4.02
518 519 8.439993 TGCCCAAAAATTAAAAACTTAAGGTC 57.560 30.769 7.53 0.00 0.00 3.85
519 520 8.809468 TTGCCCAAAAATTAAAAACTTAAGGT 57.191 26.923 7.53 0.00 0.00 3.50
524 525 9.935241 ATTGTTTTGCCCAAAAATTAAAAACTT 57.065 22.222 7.67 0.00 41.37 2.66
525 526 9.579768 GATTGTTTTGCCCAAAAATTAAAAACT 57.420 25.926 7.67 0.00 41.37 2.66
526 527 9.358872 TGATTGTTTTGCCCAAAAATTAAAAAC 57.641 25.926 7.67 0.00 41.37 2.43
530 531 8.499162 CGTATGATTGTTTTGCCCAAAAATTAA 58.501 29.630 7.67 5.11 41.37 1.40
531 532 7.872993 TCGTATGATTGTTTTGCCCAAAAATTA 59.127 29.630 7.67 0.00 41.37 1.40
532 533 6.708054 TCGTATGATTGTTTTGCCCAAAAATT 59.292 30.769 7.67 0.00 41.37 1.82
533 534 6.226787 TCGTATGATTGTTTTGCCCAAAAAT 58.773 32.000 7.67 0.00 41.37 1.82
534 535 5.601662 TCGTATGATTGTTTTGCCCAAAAA 58.398 33.333 7.67 0.00 41.37 1.94
535 536 5.201713 TCGTATGATTGTTTTGCCCAAAA 57.798 34.783 2.26 2.26 37.90 2.44
536 537 4.855715 TCGTATGATTGTTTTGCCCAAA 57.144 36.364 0.00 0.00 0.00 3.28
537 538 4.855715 TTCGTATGATTGTTTTGCCCAA 57.144 36.364 0.00 0.00 0.00 4.12
538 539 4.855715 TTTCGTATGATTGTTTTGCCCA 57.144 36.364 0.00 0.00 0.00 5.36
539 540 6.720012 ATTTTTCGTATGATTGTTTTGCCC 57.280 33.333 0.00 0.00 0.00 5.36
540 541 8.017587 AGAATTTTTCGTATGATTGTTTTGCC 57.982 30.769 0.00 0.00 34.02 4.52
570 571 7.624360 TGTACACCATTGTTCCTGATTATTC 57.376 36.000 0.00 0.00 37.15 1.75
620 622 8.992073 GGTTCAAGATTTTGTATTTGCATTTCT 58.008 29.630 0.00 0.00 35.73 2.52
664 666 8.705134 GGGGTTTTAAACGAGTTCAATATTTTG 58.295 33.333 1.52 0.00 0.00 2.44
670 672 4.261280 CGTGGGGTTTTAAACGAGTTCAAT 60.261 41.667 1.52 0.00 38.27 2.57
678 680 1.002576 GTGGACGTGGGGTTTTAAACG 60.003 52.381 0.00 0.00 41.64 3.60
680 682 2.022934 GTGTGGACGTGGGGTTTTAAA 58.977 47.619 0.00 0.00 0.00 1.52
688 690 4.016706 GGGAGGTGTGGACGTGGG 62.017 72.222 0.00 0.00 0.00 4.61
700 706 4.114015 AGGTTTTACCAAAGAAGGGAGG 57.886 45.455 0.00 0.00 41.95 4.30
717 723 8.872845 CGTCCTTTACGTGTTTATTTATAGGTT 58.127 33.333 0.00 0.00 46.72 3.50
756 762 1.521681 GTGGCCACTCCGCATCTAC 60.522 63.158 29.12 0.00 44.77 2.59
763 769 1.016627 CACATATTGTGGCCACTCCG 58.983 55.000 34.75 20.57 44.27 4.63
813 819 1.356059 GGAGGGAAGGCCTCTCTTTTT 59.644 52.381 17.08 0.00 33.73 1.94
814 820 0.995803 GGAGGGAAGGCCTCTCTTTT 59.004 55.000 17.08 0.00 33.73 2.27
832 838 9.367160 ACCATGGTTTCTATTAATGGAAATAGG 57.633 33.333 24.36 22.72 40.23 2.57
834 840 9.362151 GGACCATGGTTTCTATTAATGGAAATA 57.638 33.333 24.36 18.15 40.23 1.40
860 866 3.765026 CCATTGGTTTCGGGTAATTTCG 58.235 45.455 0.00 0.00 0.00 3.46
923 929 5.337169 GCTGGGGTTATTGCTATTTTTGTCA 60.337 40.000 0.00 0.00 0.00 3.58
983 989 5.391310 GCCATCATGGTTGATTGTCGATATC 60.391 44.000 5.31 0.00 40.70 1.63
1001 1007 0.400213 AAGGACTTTGGACGCCATCA 59.600 50.000 0.00 0.00 31.53 3.07
1230 1236 1.078143 GAGGATGGTCCGCTGCTTT 60.078 57.895 0.00 0.00 42.75 3.51
1311 1317 2.110967 CATGGTCTCCAGCTTGGCG 61.111 63.158 0.00 0.00 36.75 5.69
1321 1327 1.731720 GTGTTGGAGAGCATGGTCTC 58.268 55.000 36.10 36.10 42.11 3.36
1497 1503 3.081409 GGGCCGAGTAGCTTGGGA 61.081 66.667 0.00 0.00 35.62 4.37
1617 1629 5.814705 CCACCTTACTCAATTCTCAGATCAC 59.185 44.000 0.00 0.00 0.00 3.06
1695 1708 3.220110 AGATGTATGAAGCCTTGGCATG 58.780 45.455 14.54 0.00 0.00 4.06
1727 1743 7.426929 ACACAAAATTAGTACAGCAGAAGAG 57.573 36.000 0.00 0.00 0.00 2.85
1728 1744 7.801716 AACACAAAATTAGTACAGCAGAAGA 57.198 32.000 0.00 0.00 0.00 2.87
1731 1747 6.544197 TGGAAACACAAAATTAGTACAGCAGA 59.456 34.615 0.00 0.00 33.40 4.26
1732 1748 6.734137 TGGAAACACAAAATTAGTACAGCAG 58.266 36.000 0.00 0.00 33.40 4.24
1733 1749 6.320164 ACTGGAAACACAAAATTAGTACAGCA 59.680 34.615 0.00 0.00 35.60 4.41
1734 1750 6.735130 ACTGGAAACACAAAATTAGTACAGC 58.265 36.000 0.00 0.00 35.60 4.40
1770 1786 7.654568 TGTACTCGATTCACTTCACTAAGAAA 58.345 34.615 0.00 0.00 35.40 2.52
1771 1787 7.210718 TGTACTCGATTCACTTCACTAAGAA 57.789 36.000 0.00 0.00 36.50 2.52
1772 1788 6.812879 TGTACTCGATTCACTTCACTAAGA 57.187 37.500 0.00 0.00 36.50 2.10
1773 1789 7.085116 AGTTGTACTCGATTCACTTCACTAAG 58.915 38.462 0.00 0.00 38.77 2.18
1795 1812 0.404426 GCCCCAACCAACCTCTAGTT 59.596 55.000 0.00 0.00 40.16 2.24
1817 1834 3.360340 GCACACTGCACAGGAGGC 61.360 66.667 2.21 0.00 44.26 4.70
1919 2405 0.390124 ACGCACGGGTGTTCTTCTAA 59.610 50.000 0.00 0.00 32.83 2.10
2060 4612 0.855855 TGAGGAGGAGGGAGGGAGAA 60.856 60.000 0.00 0.00 0.00 2.87
2245 6308 5.576384 TGTCTTCAGTGCAAAACATTTGTTC 59.424 36.000 4.90 0.00 37.25 3.18
2360 6423 6.845908 AGGATGATATATGTTGGCTCTGTTT 58.154 36.000 0.00 0.00 0.00 2.83
2531 6594 5.418676 CAAGTTGGCCCGATATCAATTTTT 58.581 37.500 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.