Multiple sequence alignment - TraesCS3B01G014300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G014300 chr3B 100.000 3233 0 0 1 3233 6116551 6119783 0.000000e+00 5971.0
1 TraesCS3B01G014300 chr3B 92.828 1464 73 13 2 1454 5803993 5802551 0.000000e+00 2093.0
2 TraesCS3B01G014300 chr3B 80.682 704 98 22 1564 2242 6126859 6127549 2.220000e-141 512.0
3 TraesCS3B01G014300 chr3B 89.848 197 20 0 1092 1288 6126335 6126531 1.490000e-63 254.0
4 TraesCS3B01G014300 chr3B 89.024 164 18 0 1092 1255 6144900 6145063 1.520000e-48 204.0
5 TraesCS3B01G014300 chr3B 74.695 328 64 18 775 1094 6125979 6126295 9.410000e-26 128.0
6 TraesCS3B01G014300 chr3B 82.270 141 23 2 954 1094 6144722 6144860 1.580000e-23 121.0
7 TraesCS3B01G014300 chr3D 91.967 2552 142 32 2 2493 392917 390369 0.000000e+00 3518.0
8 TraesCS3B01G014300 chr3D 82.429 700 99 18 1577 2254 357092 356395 9.990000e-165 590.0
9 TraesCS3B01G014300 chr3D 86.235 247 30 3 1092 1338 357470 357228 6.880000e-67 265.0
10 TraesCS3B01G014300 chr3D 81.492 362 32 13 2829 3165 377978 377627 6.880000e-67 265.0
11 TraesCS3B01G014300 chr3D 82.566 304 37 8 2491 2793 390308 390020 1.490000e-63 254.0
12 TraesCS3B01G014300 chr3A 89.788 1459 87 29 5 1452 9109274 9110681 0.000000e+00 1812.0
13 TraesCS3B01G014300 chr3A 92.802 1042 62 9 29 1059 9127992 9129031 0.000000e+00 1496.0
14 TraesCS3B01G014300 chr3A 87.860 1112 66 18 1451 2493 9111355 9112466 0.000000e+00 1242.0
15 TraesCS3B01G014300 chr3A 81.241 725 100 21 1565 2256 9185920 9186641 1.310000e-153 553.0
16 TraesCS3B01G014300 chr3A 86.622 299 17 3 1277 1570 9129098 9129378 3.130000e-80 309.0
17 TraesCS3B01G014300 chr3A 90.909 198 16 2 1577 1773 711203432 711203628 6.880000e-67 265.0
18 TraesCS3B01G014300 chr3A 80.268 299 37 11 2784 3062 9132060 9132356 4.230000e-49 206.0
19 TraesCS3B01G014300 chr3A 94.915 59 3 0 1098 1156 9129043 9129101 3.430000e-15 93.5
20 TraesCS3B01G014300 chr3A 83.696 92 9 2 3074 3165 9138464 9138549 7.430000e-12 82.4
21 TraesCS3B01G014300 chr5A 82.535 355 53 5 1881 2226 693673782 693673428 1.460000e-78 303.0
22 TraesCS3B01G014300 chr5A 90.500 200 19 0 1577 1776 693674498 693674299 6.880000e-67 265.0
23 TraesCS3B01G014300 chr4D 81.408 355 57 5 1881 2226 508431694 508431340 6.830000e-72 281.0
24 TraesCS3B01G014300 chr4D 91.000 200 18 0 1577 1776 508432411 508432212 1.480000e-68 270.0
25 TraesCS3B01G014300 chr4B 88.312 231 24 2 1577 1807 659520586 659520813 1.140000e-69 274.0
26 TraesCS3B01G014300 chr4B 81.006 358 56 6 1881 2226 659521368 659521725 1.140000e-69 274.0
27 TraesCS3B01G014300 chr4B 88.571 175 20 0 1113 1287 659520314 659520488 2.530000e-51 213.0
28 TraesCS3B01G014300 chr1D 89.831 118 8 3 1175 1290 300326527 300326412 7.230000e-32 148.0
29 TraesCS3B01G014300 chr1D 73.043 345 69 15 1881 2225 300718367 300718047 2.050000e-17 100.0
30 TraesCS3B01G014300 chr1D 96.875 32 1 0 1346 1377 219480670 219480701 2.000000e-03 54.7
31 TraesCS3B01G014300 chr1A 89.655 116 8 3 1175 1288 374690360 374690247 9.350000e-31 145.0
32 TraesCS3B01G014300 chr1A 78.981 157 33 0 2069 2225 375112499 375112343 1.230000e-19 108.0
33 TraesCS3B01G014300 chr4A 95.122 41 2 0 1340 1380 465800229 465800269 7.490000e-07 65.8
34 TraesCS3B01G014300 chr2D 100.000 35 0 0 1346 1380 612999385 612999419 7.490000e-07 65.8
35 TraesCS3B01G014300 chr2D 87.500 48 5 1 1349 1395 291859336 291859383 2.000000e-03 54.7
36 TraesCS3B01G014300 chr7B 88.000 50 4 2 1346 1394 16715771 16715819 1.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G014300 chr3B 6116551 6119783 3232 False 5971.000000 5971 100.000000 1 3233 1 chr3B.!!$F1 3232
1 TraesCS3B01G014300 chr3B 5802551 5803993 1442 True 2093.000000 2093 92.828000 2 1454 1 chr3B.!!$R1 1452
2 TraesCS3B01G014300 chr3B 6125979 6127549 1570 False 298.000000 512 81.741667 775 2242 3 chr3B.!!$F2 1467
3 TraesCS3B01G014300 chr3D 390020 392917 2897 True 1886.000000 3518 87.266500 2 2793 2 chr3D.!!$R3 2791
4 TraesCS3B01G014300 chr3D 356395 357470 1075 True 427.500000 590 84.332000 1092 2254 2 chr3D.!!$R2 1162
5 TraesCS3B01G014300 chr3A 9109274 9112466 3192 False 1527.000000 1812 88.824000 5 2493 2 chr3A.!!$F4 2488
6 TraesCS3B01G014300 chr3A 9185920 9186641 721 False 553.000000 553 81.241000 1565 2256 1 chr3A.!!$F2 691
7 TraesCS3B01G014300 chr3A 9127992 9132356 4364 False 526.125000 1496 88.651750 29 3062 4 chr3A.!!$F5 3033
8 TraesCS3B01G014300 chr5A 693673428 693674498 1070 True 284.000000 303 86.517500 1577 2226 2 chr5A.!!$R1 649
9 TraesCS3B01G014300 chr4D 508431340 508432411 1071 True 275.500000 281 86.204000 1577 2226 2 chr4D.!!$R1 649
10 TraesCS3B01G014300 chr4B 659520314 659521725 1411 False 253.666667 274 85.963000 1113 2226 3 chr4B.!!$F1 1113

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 595 0.178767 TCATCAATCAGCCGTCCCAG 59.821 55.0 0.0 0.0 0.0 4.45 F
737 745 0.184933 ACAAGCCAGTTTAGCCCACA 59.815 50.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 3983 0.108186 TGCGCAGTCATGTCCCTTAG 60.108 55.0 5.66 0.0 0.0 2.18 R
2373 4543 0.608640 GAAGGATGGACGGACACACT 59.391 55.0 0.00 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 7.392418 CATGTATGATCTCATAGGTCCAACAT 58.608 38.462 0.13 0.00 39.29 2.71
245 249 5.751243 AATCATTAGTACATCGCCAAACC 57.249 39.130 0.00 0.00 0.00 3.27
246 250 4.209307 TCATTAGTACATCGCCAAACCA 57.791 40.909 0.00 0.00 0.00 3.67
264 269 6.588373 CCAAACCATTACAATTTTTCCCTACG 59.412 38.462 0.00 0.00 0.00 3.51
280 285 3.822940 CCTACGGGGCCATTAATTACAA 58.177 45.455 4.39 0.00 0.00 2.41
286 291 4.158764 CGGGGCCATTAATTACAAAGACAA 59.841 41.667 4.39 0.00 0.00 3.18
303 308 8.859090 ACAAAGACAATGATCAACCTTAAATCA 58.141 29.630 0.00 0.00 34.17 2.57
350 358 5.220381 GGCCTAACTAAACAGAGCAAAAAC 58.780 41.667 0.00 0.00 0.00 2.43
421 429 1.993370 ACTATCAGAAGCACGAAACGC 59.007 47.619 0.00 0.00 0.00 4.84
462 470 5.970317 TGATAATCGTACGTGGTCCATAT 57.030 39.130 16.05 4.83 0.00 1.78
495 503 1.230324 AACTTGCCGAAGTCAGAAGC 58.770 50.000 0.00 0.00 41.87 3.86
587 595 0.178767 TCATCAATCAGCCGTCCCAG 59.821 55.000 0.00 0.00 0.00 4.45
604 612 1.566211 CAGTCACTCCTCTGTCCCAT 58.434 55.000 0.00 0.00 0.00 4.00
683 691 6.910995 AGGTAGCGACATGTACATATAGAAC 58.089 40.000 8.32 3.31 0.00 3.01
737 745 0.184933 ACAAGCCAGTTTAGCCCACA 59.815 50.000 0.00 0.00 0.00 4.17
745 753 2.255172 TTTAGCCCACACCGCGTTG 61.255 57.895 4.92 2.75 0.00 4.10
1441 1670 7.082972 AGATTGGAGGGAGTACCACTATAATT 58.917 38.462 0.00 0.00 43.89 1.40
1517 2425 1.362768 TCGAGTGCATGCATTCAGAC 58.637 50.000 33.75 17.70 33.10 3.51
1524 2432 4.024302 AGTGCATGCATTCAGACATATTCG 60.024 41.667 25.64 0.00 0.00 3.34
1571 2517 0.387622 GCCTGTAACGTCGTGCACTA 60.388 55.000 16.19 0.00 0.00 2.74
1575 2690 2.387185 TGTAACGTCGTGCACTACAAG 58.613 47.619 20.10 8.31 0.00 3.16
1596 3109 3.691609 AGTGCAGATAAGGTGCTTAAAGC 59.308 43.478 0.00 0.00 41.78 3.51
1861 3981 0.815095 AGACGACACACACTGACACA 59.185 50.000 0.00 0.00 0.00 3.72
1862 3982 0.921347 GACGACACACACTGACACAC 59.079 55.000 0.00 0.00 0.00 3.82
1863 3983 0.459585 ACGACACACACTGACACACC 60.460 55.000 0.00 0.00 0.00 4.16
1865 3985 1.066454 CGACACACACTGACACACCTA 59.934 52.381 0.00 0.00 0.00 3.08
1868 3988 2.158957 ACACACACTGACACACCTAAGG 60.159 50.000 0.00 0.00 0.00 2.69
1875 3995 2.567169 CTGACACACCTAAGGGACATGA 59.433 50.000 0.00 0.00 36.25 3.07
1887 4025 1.218047 GACATGACTGCGCAGGGTA 59.782 57.895 38.27 24.66 0.00 3.69
1987 4125 2.702788 TACGAGAACGGCGATGGCA 61.703 57.895 16.62 0.00 44.46 4.92
1995 4133 1.031571 ACGGCGATGGCAATGTGAAT 61.032 50.000 16.62 0.00 42.47 2.57
2113 4263 2.946084 ATGCCCACCACCCCATGA 60.946 61.111 0.00 0.00 0.00 3.07
2117 4267 2.362889 CCACCACCCCATGAAGGC 60.363 66.667 0.00 0.00 35.39 4.35
2160 4310 1.006102 CGAGTCCGGCAAGACACTT 60.006 57.895 0.00 0.00 39.34 3.16
2233 4383 3.933332 CTCCCTCGTCCAGTTTCATTAAC 59.067 47.826 0.00 0.00 36.99 2.01
2268 4434 8.094284 GGCCAGATATGCCCATATATATATGA 57.906 38.462 27.37 12.90 43.33 2.15
2299 4465 5.045213 TGAAATGGGTAGTAGCCTGATTTGA 60.045 40.000 18.90 9.09 36.53 2.69
2300 4466 5.450818 AATGGGTAGTAGCCTGATTTGAA 57.549 39.130 18.90 0.00 36.53 2.69
2301 4467 4.487714 TGGGTAGTAGCCTGATTTGAAG 57.512 45.455 18.90 0.00 36.53 3.02
2303 4469 4.162320 TGGGTAGTAGCCTGATTTGAAGAG 59.838 45.833 18.90 0.00 36.53 2.85
2304 4470 4.406003 GGGTAGTAGCCTGATTTGAAGAGA 59.594 45.833 11.29 0.00 31.81 3.10
2340 4510 2.237751 CGTGCGTGCCTATGTAGCC 61.238 63.158 0.00 0.00 0.00 3.93
2366 4536 2.261361 CGTCGCCTGTGATGTCCA 59.739 61.111 0.00 0.00 0.00 4.02
2373 4543 1.608055 CCTGTGATGTCCAGTTGCAA 58.392 50.000 0.00 0.00 0.00 4.08
2470 4670 5.010922 ACATTTGTGGTTGTGCATTAGACAT 59.989 36.000 0.00 0.00 0.00 3.06
2522 4930 3.741476 CAGCTTTGCCGAGTGCCC 61.741 66.667 0.00 0.00 40.16 5.36
2526 4934 2.032528 TTTGCCGAGTGCCCAGAG 59.967 61.111 0.00 0.00 40.16 3.35
2533 4941 1.464734 CGAGTGCCCAGAGAACTCTA 58.535 55.000 3.95 0.00 38.53 2.43
2538 4946 3.584848 AGTGCCCAGAGAACTCTACAAAT 59.415 43.478 3.95 0.00 37.98 2.32
2541 4949 3.869912 GCCCAGAGAACTCTACAAATGCA 60.870 47.826 3.95 0.00 37.98 3.96
2559 4967 3.734463 TGCAGGAAACAACTCGACAATA 58.266 40.909 0.00 0.00 0.00 1.90
2561 4969 4.759693 TGCAGGAAACAACTCGACAATATT 59.240 37.500 0.00 0.00 0.00 1.28
2564 4972 6.088085 GCAGGAAACAACTCGACAATATTTTG 59.912 38.462 0.00 0.00 38.86 2.44
2565 4973 6.088085 CAGGAAACAACTCGACAATATTTTGC 59.912 38.462 0.00 0.00 36.22 3.68
2567 4975 4.078363 ACAACTCGACAATATTTTGCCG 57.922 40.909 0.00 0.00 39.70 5.69
2568 4976 3.749088 ACAACTCGACAATATTTTGCCGA 59.251 39.130 7.05 7.05 43.96 5.54
2572 4980 4.593597 TCGACAATATTTTGCCGAGTTC 57.406 40.909 3.39 0.00 41.81 3.01
2573 4981 4.250464 TCGACAATATTTTGCCGAGTTCT 58.750 39.130 3.39 0.00 41.81 3.01
2574 4982 4.092821 TCGACAATATTTTGCCGAGTTCTG 59.907 41.667 3.39 0.00 41.81 3.02
2575 4983 4.096732 ACAATATTTTGCCGAGTTCTGC 57.903 40.909 0.00 0.00 36.22 4.26
2576 4984 3.505680 ACAATATTTTGCCGAGTTCTGCA 59.494 39.130 0.00 0.00 36.22 4.41
2578 4986 0.598065 ATTTTGCCGAGTTCTGCACC 59.402 50.000 0.00 0.00 35.85 5.01
2579 4987 1.781025 TTTTGCCGAGTTCTGCACCG 61.781 55.000 0.00 0.00 35.85 4.94
2594 5002 2.809601 CCGGGCGAACAAGACTCG 60.810 66.667 0.00 0.00 39.33 4.18
2599 5007 2.668280 GCGAACAAGACTCGGCCAC 61.668 63.158 2.24 0.00 36.80 5.01
2613 5021 1.240256 GGCCACGAACATGTTGGTAA 58.760 50.000 23.46 0.00 30.36 2.85
2618 5026 3.426159 CCACGAACATGTTGGTAATGAGC 60.426 47.826 23.46 2.33 30.36 4.26
2625 5033 7.524717 AACATGTTGGTAATGAGCTACTTTT 57.475 32.000 11.07 0.00 31.22 2.27
2642 5050 4.832248 ACTTTTCCGAGTGCTTATCATCA 58.168 39.130 0.00 0.00 0.00 3.07
2644 5052 4.736126 TTTCCGAGTGCTTATCATCAGA 57.264 40.909 0.00 0.00 0.00 3.27
2651 5059 5.578336 CGAGTGCTTATCATCAGAAAACTCA 59.422 40.000 0.00 0.00 32.89 3.41
2703 5337 3.502191 TGTGTCAACTTGGCAAACTTC 57.498 42.857 0.00 0.00 31.67 3.01
2718 5998 1.486211 ACTTCCACCATAGACGGAGG 58.514 55.000 0.00 0.00 38.09 4.30
2719 5999 0.753262 CTTCCACCATAGACGGAGGG 59.247 60.000 0.00 0.00 37.39 4.30
2720 6000 0.689745 TTCCACCATAGACGGAGGGG 60.690 60.000 0.00 0.00 37.39 4.79
2721 6001 2.140792 CCACCATAGACGGAGGGGG 61.141 68.421 0.00 0.00 40.16 5.40
2722 6002 1.075525 CACCATAGACGGAGGGGGA 60.076 63.158 0.00 0.00 0.00 4.81
2723 6003 1.115930 CACCATAGACGGAGGGGGAG 61.116 65.000 0.00 0.00 0.00 4.30
2724 6004 1.233369 CCATAGACGGAGGGGGAGT 59.767 63.158 0.00 0.00 0.00 3.85
2747 6027 3.122323 ATTAACGGCCGCACCACG 61.122 61.111 28.58 0.00 39.03 4.94
2761 6041 1.263217 CACCACGCCACACTAACTTTC 59.737 52.381 0.00 0.00 0.00 2.62
2765 6045 0.517316 CGCCACACTAACTTTCCTGC 59.483 55.000 0.00 0.00 0.00 4.85
2773 6053 0.321298 TAACTTTCCTGCGTGCTCCC 60.321 55.000 0.00 0.00 0.00 4.30
2794 6401 2.413837 GGCTCGTACTCAACATTGTGT 58.586 47.619 4.86 4.86 38.34 3.72
2796 6403 2.412089 GCTCGTACTCAACATTGTGTCC 59.588 50.000 2.76 0.00 36.44 4.02
2801 6408 0.518636 CTCAACATTGTGTCCGGCTG 59.481 55.000 0.00 0.00 0.00 4.85
2807 6414 0.467290 ATTGTGTCCGGCTGGTTTGT 60.467 50.000 12.43 0.00 36.30 2.83
2808 6415 0.180642 TTGTGTCCGGCTGGTTTGTA 59.819 50.000 12.43 0.00 36.30 2.41
2810 6417 0.034337 GTGTCCGGCTGGTTTGTAGA 59.966 55.000 12.43 0.00 36.30 2.59
2811 6418 0.320374 TGTCCGGCTGGTTTGTAGAG 59.680 55.000 12.43 0.00 36.30 2.43
2824 6431 5.995897 TGGTTTGTAGAGTTTTCCTAGAAGC 59.004 40.000 0.00 0.00 0.00 3.86
2826 6433 6.231951 GTTTGTAGAGTTTTCCTAGAAGCCT 58.768 40.000 0.00 0.00 0.00 4.58
2827 6434 6.435292 TTGTAGAGTTTTCCTAGAAGCCTT 57.565 37.500 0.00 0.00 0.00 4.35
2852 6467 7.924541 TGTAAGGAAACTAGTCAAATATGGGT 58.075 34.615 0.00 0.00 42.68 4.51
2871 6486 0.961019 TCAAAACCATGCAGAGTGGC 59.039 50.000 4.68 0.00 40.49 5.01
2884 6499 2.005971 GAGTGGCGAACTCGGTAAAT 57.994 50.000 0.69 0.00 45.76 1.40
2888 6503 0.743345 GGCGAACTCGGTAAATGCCT 60.743 55.000 0.69 0.00 40.23 4.75
2890 6505 1.467342 GCGAACTCGGTAAATGCCTTT 59.533 47.619 0.69 0.00 40.23 3.11
2892 6507 2.739913 CGAACTCGGTAAATGCCTTTCA 59.260 45.455 0.00 0.00 35.37 2.69
2895 6510 2.488153 ACTCGGTAAATGCCTTTCAAGC 59.512 45.455 0.00 0.00 0.00 4.01
2897 6512 2.227865 TCGGTAAATGCCTTTCAAGCAC 59.772 45.455 0.00 0.00 44.40 4.40
2899 6514 3.317150 GGTAAATGCCTTTCAAGCACAC 58.683 45.455 0.00 0.00 44.40 3.82
2903 6518 2.292103 TGCCTTTCAAGCACACAAAC 57.708 45.000 0.00 0.00 34.69 2.93
2905 6520 2.195922 GCCTTTCAAGCACACAAACAG 58.804 47.619 0.00 0.00 0.00 3.16
2906 6521 2.417243 GCCTTTCAAGCACACAAACAGT 60.417 45.455 0.00 0.00 0.00 3.55
2919 6534 3.069586 CACAAACAGTGTCCTCCTCACTA 59.930 47.826 0.00 0.00 43.14 2.74
2920 6535 3.069729 ACAAACAGTGTCCTCCTCACTAC 59.930 47.826 0.00 0.00 43.14 2.73
2938 6553 4.461781 CACTACCGAGTTTCTTCCTAAGGA 59.538 45.833 0.00 0.00 31.73 3.36
2942 6557 5.489249 ACCGAGTTTCTTCCTAAGGATTTC 58.511 41.667 0.00 0.00 0.00 2.17
2947 6571 6.716284 AGTTTCTTCCTAAGGATTTCTCCAG 58.284 40.000 0.00 0.00 44.79 3.86
2954 6578 5.600484 TCCTAAGGATTTCTCCAGAAGCTAG 59.400 44.000 0.00 0.00 44.79 3.42
2959 6583 0.539051 TTCTCCAGAAGCTAGCAGGC 59.461 55.000 18.83 5.41 0.00 4.85
2967 6591 0.250295 AAGCTAGCAGGCGTTGACAA 60.250 50.000 18.83 0.00 37.29 3.18
2971 6595 1.131126 CTAGCAGGCGTTGACAATTGG 59.869 52.381 10.83 0.00 0.00 3.16
2972 6596 0.823356 AGCAGGCGTTGACAATTGGT 60.823 50.000 10.83 0.00 0.00 3.67
2973 6597 0.878416 GCAGGCGTTGACAATTGGTA 59.122 50.000 10.83 0.00 0.00 3.25
2974 6598 1.472480 GCAGGCGTTGACAATTGGTAT 59.528 47.619 10.83 0.00 0.00 2.73
2975 6599 2.731968 GCAGGCGTTGACAATTGGTATG 60.732 50.000 10.83 1.36 0.00 2.39
2976 6600 1.472480 AGGCGTTGACAATTGGTATGC 59.528 47.619 10.83 10.70 0.00 3.14
2978 6602 2.680841 GGCGTTGACAATTGGTATGCTA 59.319 45.455 10.83 0.00 0.00 3.49
3009 6635 6.748333 ACACTCTGTAAATGGTCAATCATG 57.252 37.500 0.00 0.00 0.00 3.07
3012 6638 7.231317 ACACTCTGTAAATGGTCAATCATGTTT 59.769 33.333 0.00 0.00 0.00 2.83
3024 6650 8.954350 TGGTCAATCATGTTTTGTTTTCAATTT 58.046 25.926 9.78 0.00 39.70 1.82
3041 6667 6.215495 TCAATTTATTTTTCGGACCATCCC 57.785 37.500 0.00 0.00 31.13 3.85
3055 6681 4.505742 GGACCATCCCTCCATAGAAATCAC 60.506 50.000 0.00 0.00 0.00 3.06
3066 6692 9.539825 CCTCCATAGAAATCACTATATATGTGC 57.460 37.037 0.00 0.00 35.58 4.57
3077 6703 8.279970 TCACTATATATGTGCATAATTTGGGC 57.720 34.615 0.00 0.00 35.58 5.36
3078 6704 7.887495 TCACTATATATGTGCATAATTTGGGCA 59.113 33.333 0.00 0.00 35.58 5.36
3079 6705 8.522003 CACTATATATGTGCATAATTTGGGCAA 58.478 33.333 0.00 0.00 39.57 4.52
3080 6706 9.258629 ACTATATATGTGCATAATTTGGGCAAT 57.741 29.630 0.00 0.00 39.57 3.56
3081 6707 9.524106 CTATATATGTGCATAATTTGGGCAATG 57.476 33.333 0.00 0.00 39.57 2.82
3082 6708 4.757019 ATGTGCATAATTTGGGCAATGA 57.243 36.364 0.00 0.00 39.57 2.57
3083 6709 4.548451 TGTGCATAATTTGGGCAATGAA 57.452 36.364 0.00 0.00 39.57 2.57
3084 6710 4.903054 TGTGCATAATTTGGGCAATGAAA 58.097 34.783 0.00 0.00 39.57 2.69
3085 6711 4.936411 TGTGCATAATTTGGGCAATGAAAG 59.064 37.500 0.00 0.00 39.57 2.62
3086 6712 4.333372 GTGCATAATTTGGGCAATGAAAGG 59.667 41.667 0.00 0.00 39.57 3.11
3087 6713 4.224594 TGCATAATTTGGGCAATGAAAGGA 59.775 37.500 0.00 0.00 34.05 3.36
3088 6714 5.104444 TGCATAATTTGGGCAATGAAAGGAT 60.104 36.000 0.00 0.00 34.05 3.24
3089 6715 5.467735 GCATAATTTGGGCAATGAAAGGATC 59.532 40.000 0.00 0.00 0.00 3.36
3090 6716 6.687139 GCATAATTTGGGCAATGAAAGGATCT 60.687 38.462 0.00 0.00 0.00 2.75
3091 6717 5.767277 AATTTGGGCAATGAAAGGATCTT 57.233 34.783 0.00 0.00 0.00 2.40
3092 6718 6.872585 AATTTGGGCAATGAAAGGATCTTA 57.127 33.333 0.00 0.00 0.00 2.10
3093 6719 5.659440 TTTGGGCAATGAAAGGATCTTAC 57.341 39.130 0.00 0.00 0.00 2.34
3094 6720 4.314522 TGGGCAATGAAAGGATCTTACA 57.685 40.909 0.00 0.00 0.00 2.41
3095 6721 4.671831 TGGGCAATGAAAGGATCTTACAA 58.328 39.130 0.00 0.00 0.00 2.41
3096 6722 4.706476 TGGGCAATGAAAGGATCTTACAAG 59.294 41.667 0.00 0.00 0.00 3.16
3097 6723 4.706962 GGGCAATGAAAGGATCTTACAAGT 59.293 41.667 0.00 0.00 0.00 3.16
3098 6724 5.393461 GGGCAATGAAAGGATCTTACAAGTG 60.393 44.000 0.00 0.00 0.00 3.16
3099 6725 5.415701 GGCAATGAAAGGATCTTACAAGTGA 59.584 40.000 0.00 0.00 0.00 3.41
3100 6726 6.096001 GGCAATGAAAGGATCTTACAAGTGAT 59.904 38.462 0.00 0.00 0.00 3.06
3101 6727 6.971184 GCAATGAAAGGATCTTACAAGTGATG 59.029 38.462 0.00 0.00 0.00 3.07
3102 6728 7.478322 CAATGAAAGGATCTTACAAGTGATGG 58.522 38.462 0.00 0.00 0.00 3.51
3103 6729 5.500234 TGAAAGGATCTTACAAGTGATGGG 58.500 41.667 0.00 0.00 0.00 4.00
3104 6730 5.014123 TGAAAGGATCTTACAAGTGATGGGT 59.986 40.000 0.00 0.00 0.00 4.51
3105 6731 5.520748 AAGGATCTTACAAGTGATGGGTT 57.479 39.130 0.00 0.00 0.00 4.11
3106 6732 6.636454 AAGGATCTTACAAGTGATGGGTTA 57.364 37.500 0.00 0.00 0.00 2.85
3107 6733 6.831664 AGGATCTTACAAGTGATGGGTTAT 57.168 37.500 0.00 0.00 0.00 1.89
3108 6734 7.213178 AGGATCTTACAAGTGATGGGTTATT 57.787 36.000 0.00 0.00 0.00 1.40
3109 6735 7.283329 AGGATCTTACAAGTGATGGGTTATTC 58.717 38.462 0.00 0.00 0.00 1.75
3110 6736 7.127955 AGGATCTTACAAGTGATGGGTTATTCT 59.872 37.037 0.00 0.00 0.00 2.40
3111 6737 8.429641 GGATCTTACAAGTGATGGGTTATTCTA 58.570 37.037 0.00 0.00 0.00 2.10
3118 6744 8.458843 ACAAGTGATGGGTTATTCTATTTTTCG 58.541 33.333 0.00 0.00 0.00 3.46
3119 6745 7.568199 AGTGATGGGTTATTCTATTTTTCGG 57.432 36.000 0.00 0.00 0.00 4.30
3120 6746 7.343357 AGTGATGGGTTATTCTATTTTTCGGA 58.657 34.615 0.00 0.00 0.00 4.55
3121 6747 7.832187 AGTGATGGGTTATTCTATTTTTCGGAA 59.168 33.333 0.00 0.00 0.00 4.30
3122 6748 8.463607 GTGATGGGTTATTCTATTTTTCGGAAA 58.536 33.333 0.00 0.00 0.00 3.13
3123 6749 9.026121 TGATGGGTTATTCTATTTTTCGGAAAA 57.974 29.630 11.68 11.68 38.96 2.29
3126 6752 9.026121 TGGGTTATTCTATTTTTCGGAAAATCA 57.974 29.630 17.66 3.71 42.80 2.57
3127 6753 9.516314 GGGTTATTCTATTTTTCGGAAAATCAG 57.484 33.333 17.66 12.98 42.80 2.90
3131 6757 6.509418 TCTATTTTTCGGAAAATCAGTGGG 57.491 37.500 17.66 3.82 42.80 4.61
3132 6758 3.378911 TTTTTCGGAAAATCAGTGGGC 57.621 42.857 15.97 0.00 30.07 5.36
3133 6759 0.878416 TTTCGGAAAATCAGTGGGCG 59.122 50.000 0.00 0.00 0.00 6.13
3134 6760 1.582610 TTCGGAAAATCAGTGGGCGC 61.583 55.000 0.00 0.00 0.00 6.53
3135 6761 2.331893 CGGAAAATCAGTGGGCGCA 61.332 57.895 10.83 0.00 0.00 6.09
3136 6762 1.656818 CGGAAAATCAGTGGGCGCAT 61.657 55.000 10.83 0.00 0.00 4.73
3137 6763 0.179129 GGAAAATCAGTGGGCGCATG 60.179 55.000 10.83 6.79 0.00 4.06
3138 6764 0.179129 GAAAATCAGTGGGCGCATGG 60.179 55.000 10.83 2.25 0.00 3.66
3139 6765 0.899717 AAAATCAGTGGGCGCATGGT 60.900 50.000 10.83 0.00 0.00 3.55
3140 6766 1.597797 AAATCAGTGGGCGCATGGTG 61.598 55.000 10.83 5.58 0.00 4.17
3141 6767 2.482796 AATCAGTGGGCGCATGGTGA 62.483 55.000 10.83 11.01 0.00 4.02
3142 6768 2.274948 ATCAGTGGGCGCATGGTGAT 62.275 55.000 10.83 12.79 0.00 3.06
3143 6769 2.438975 AGTGGGCGCATGGTGATG 60.439 61.111 10.83 0.00 0.00 3.07
3144 6770 3.520862 GTGGGCGCATGGTGATGG 61.521 66.667 10.83 0.00 0.00 3.51
3145 6771 4.045781 TGGGCGCATGGTGATGGT 62.046 61.111 10.83 0.00 0.00 3.55
3146 6772 2.191908 GGGCGCATGGTGATGGTA 59.808 61.111 10.83 0.00 0.00 3.25
3147 6773 1.893808 GGGCGCATGGTGATGGTAG 60.894 63.158 10.83 0.00 0.00 3.18
3148 6774 2.546494 GGCGCATGGTGATGGTAGC 61.546 63.158 10.83 0.00 0.00 3.58
3149 6775 1.524621 GCGCATGGTGATGGTAGCT 60.525 57.895 0.30 0.00 0.00 3.32
3150 6776 1.097547 GCGCATGGTGATGGTAGCTT 61.098 55.000 0.30 0.00 0.00 3.74
3151 6777 0.659427 CGCATGGTGATGGTAGCTTG 59.341 55.000 0.00 0.00 0.00 4.01
3152 6778 1.027357 GCATGGTGATGGTAGCTTGG 58.973 55.000 0.00 0.00 0.00 3.61
3153 6779 1.408683 GCATGGTGATGGTAGCTTGGA 60.409 52.381 0.00 0.00 0.00 3.53
3154 6780 2.750807 GCATGGTGATGGTAGCTTGGAT 60.751 50.000 0.00 0.00 0.00 3.41
3155 6781 3.144506 CATGGTGATGGTAGCTTGGATC 58.855 50.000 0.00 0.00 0.00 3.36
3156 6782 1.138859 TGGTGATGGTAGCTTGGATCG 59.861 52.381 0.00 0.00 0.00 3.69
3157 6783 1.139058 GGTGATGGTAGCTTGGATCGT 59.861 52.381 0.00 0.00 0.00 3.73
3158 6784 2.420129 GGTGATGGTAGCTTGGATCGTT 60.420 50.000 0.00 0.00 0.00 3.85
3159 6785 3.181469 GGTGATGGTAGCTTGGATCGTTA 60.181 47.826 0.00 0.00 0.00 3.18
3160 6786 3.802685 GTGATGGTAGCTTGGATCGTTAC 59.197 47.826 0.00 0.00 0.00 2.50
3161 6787 2.973694 TGGTAGCTTGGATCGTTACC 57.026 50.000 0.00 5.54 38.33 2.85
3162 6788 2.181125 TGGTAGCTTGGATCGTTACCA 58.819 47.619 9.67 9.67 43.17 3.25
3163 6789 2.769663 TGGTAGCTTGGATCGTTACCAT 59.230 45.455 9.67 0.00 41.39 3.55
3164 6790 3.131396 GGTAGCTTGGATCGTTACCATG 58.869 50.000 0.00 0.00 37.92 3.66
3165 6791 3.181469 GGTAGCTTGGATCGTTACCATGA 60.181 47.826 0.00 0.00 37.92 3.07
3166 6792 3.845781 AGCTTGGATCGTTACCATGAT 57.154 42.857 0.00 0.00 37.26 2.45
3167 6793 3.733337 AGCTTGGATCGTTACCATGATC 58.267 45.455 0.00 0.00 42.71 2.92
3168 6794 2.476619 GCTTGGATCGTTACCATGATCG 59.523 50.000 0.00 0.00 43.91 3.69
3169 6795 3.717707 CTTGGATCGTTACCATGATCGT 58.282 45.455 0.00 0.00 43.91 3.73
3170 6796 3.812156 TGGATCGTTACCATGATCGTT 57.188 42.857 0.00 0.00 43.91 3.85
3171 6797 4.922471 TGGATCGTTACCATGATCGTTA 57.078 40.909 0.00 0.00 43.91 3.18
3172 6798 4.613944 TGGATCGTTACCATGATCGTTAC 58.386 43.478 0.00 0.00 43.91 2.50
3173 6799 3.985925 GGATCGTTACCATGATCGTTACC 59.014 47.826 0.00 0.00 43.91 2.85
3174 6800 4.500205 GGATCGTTACCATGATCGTTACCA 60.500 45.833 0.00 0.00 43.91 3.25
3175 6801 4.659111 TCGTTACCATGATCGTTACCAT 57.341 40.909 0.00 0.00 0.00 3.55
3176 6802 4.364860 TCGTTACCATGATCGTTACCATG 58.635 43.478 0.00 0.00 39.72 3.66
3177 6803 4.098196 TCGTTACCATGATCGTTACCATGA 59.902 41.667 0.00 0.00 41.88 3.07
3178 6804 4.988540 CGTTACCATGATCGTTACCATGAT 59.011 41.667 0.00 0.00 41.88 2.45
3179 6805 6.016108 TCGTTACCATGATCGTTACCATGATA 60.016 38.462 0.00 0.00 41.88 2.15
3180 6806 6.308041 CGTTACCATGATCGTTACCATGATAG 59.692 42.308 0.00 0.00 41.88 2.08
3181 6807 5.808366 ACCATGATCGTTACCATGATAGT 57.192 39.130 0.00 0.00 41.88 2.12
3182 6808 6.174720 ACCATGATCGTTACCATGATAGTT 57.825 37.500 0.00 0.00 41.88 2.24
3183 6809 7.297936 ACCATGATCGTTACCATGATAGTTA 57.702 36.000 0.00 0.00 41.88 2.24
3184 6810 7.152645 ACCATGATCGTTACCATGATAGTTAC 58.847 38.462 0.00 0.00 41.88 2.50
3185 6811 6.590292 CCATGATCGTTACCATGATAGTTACC 59.410 42.308 0.00 0.00 41.88 2.85
3186 6812 6.718522 TGATCGTTACCATGATAGTTACCA 57.281 37.500 0.00 0.00 0.00 3.25
3187 6813 7.114866 TGATCGTTACCATGATAGTTACCAA 57.885 36.000 0.00 0.00 0.00 3.67
3188 6814 7.732025 TGATCGTTACCATGATAGTTACCAAT 58.268 34.615 0.00 0.00 0.00 3.16
3189 6815 8.208224 TGATCGTTACCATGATAGTTACCAATT 58.792 33.333 0.00 0.00 0.00 2.32
3190 6816 8.974060 ATCGTTACCATGATAGTTACCAATTT 57.026 30.769 0.00 0.00 0.00 1.82
3191 6817 8.428186 TCGTTACCATGATAGTTACCAATTTC 57.572 34.615 0.00 0.00 0.00 2.17
3192 6818 8.262227 TCGTTACCATGATAGTTACCAATTTCT 58.738 33.333 0.00 0.00 0.00 2.52
3193 6819 8.889717 CGTTACCATGATAGTTACCAATTTCTT 58.110 33.333 0.00 0.00 0.00 2.52
3195 6821 9.747898 TTACCATGATAGTTACCAATTTCTTGT 57.252 29.630 0.00 0.00 0.00 3.16
3196 6822 8.281212 ACCATGATAGTTACCAATTTCTTGTC 57.719 34.615 0.00 0.00 0.00 3.18
3197 6823 7.888021 ACCATGATAGTTACCAATTTCTTGTCA 59.112 33.333 0.00 0.00 0.00 3.58
3198 6824 8.906867 CCATGATAGTTACCAATTTCTTGTCAT 58.093 33.333 0.00 0.00 0.00 3.06
3199 6825 9.941664 CATGATAGTTACCAATTTCTTGTCATC 57.058 33.333 0.00 0.00 0.00 2.92
3200 6826 9.911788 ATGATAGTTACCAATTTCTTGTCATCT 57.088 29.630 0.00 0.00 0.00 2.90
3201 6827 9.166173 TGATAGTTACCAATTTCTTGTCATCTG 57.834 33.333 0.00 0.00 0.00 2.90
3202 6828 6.824305 AGTTACCAATTTCTTGTCATCTGG 57.176 37.500 0.00 0.00 0.00 3.86
3203 6829 6.542821 AGTTACCAATTTCTTGTCATCTGGA 58.457 36.000 0.00 0.00 0.00 3.86
3204 6830 6.656693 AGTTACCAATTTCTTGTCATCTGGAG 59.343 38.462 0.00 0.00 0.00 3.86
3205 6831 5.246981 ACCAATTTCTTGTCATCTGGAGA 57.753 39.130 0.00 0.00 0.00 3.71
3206 6832 5.634118 ACCAATTTCTTGTCATCTGGAGAA 58.366 37.500 0.00 0.00 0.00 2.87
3207 6833 5.709164 ACCAATTTCTTGTCATCTGGAGAAG 59.291 40.000 0.00 0.00 45.70 2.85
3208 6834 5.709164 CCAATTTCTTGTCATCTGGAGAAGT 59.291 40.000 0.00 0.00 44.87 3.01
3209 6835 6.881065 CCAATTTCTTGTCATCTGGAGAAGTA 59.119 38.462 0.00 0.00 44.87 2.24
3210 6836 7.065563 CCAATTTCTTGTCATCTGGAGAAGTAG 59.934 40.741 0.00 0.00 44.87 2.57
3211 6837 6.918067 TTTCTTGTCATCTGGAGAAGTAGA 57.082 37.500 0.00 0.00 44.87 2.59
3212 6838 6.918067 TTCTTGTCATCTGGAGAAGTAGAA 57.082 37.500 0.00 0.00 44.87 2.10
3213 6839 6.522625 TCTTGTCATCTGGAGAAGTAGAAG 57.477 41.667 0.00 0.00 44.87 2.85
3214 6840 6.013379 TCTTGTCATCTGGAGAAGTAGAAGT 58.987 40.000 0.00 0.00 44.87 3.01
3215 6841 7.175797 TCTTGTCATCTGGAGAAGTAGAAGTA 58.824 38.462 0.00 0.00 44.87 2.24
3216 6842 7.670140 TCTTGTCATCTGGAGAAGTAGAAGTAA 59.330 37.037 0.00 0.00 44.87 2.24
3217 6843 7.397892 TGTCATCTGGAGAAGTAGAAGTAAG 57.602 40.000 0.00 0.00 0.00 2.34
3218 6844 7.175797 TGTCATCTGGAGAAGTAGAAGTAAGA 58.824 38.462 0.00 0.00 0.00 2.10
3219 6845 7.836685 TGTCATCTGGAGAAGTAGAAGTAAGAT 59.163 37.037 0.00 0.00 0.00 2.40
3220 6846 8.691797 GTCATCTGGAGAAGTAGAAGTAAGATT 58.308 37.037 0.00 0.00 0.00 2.40
3221 6847 9.922477 TCATCTGGAGAAGTAGAAGTAAGATTA 57.078 33.333 0.00 0.00 0.00 1.75
3223 6849 8.754991 TCTGGAGAAGTAGAAGTAAGATTAGG 57.245 38.462 0.00 0.00 0.00 2.69
3224 6850 7.285858 TCTGGAGAAGTAGAAGTAAGATTAGGC 59.714 40.741 0.00 0.00 0.00 3.93
3225 6851 6.324254 TGGAGAAGTAGAAGTAAGATTAGGCC 59.676 42.308 0.00 0.00 0.00 5.19
3226 6852 6.394025 AGAAGTAGAAGTAAGATTAGGCCG 57.606 41.667 0.00 0.00 0.00 6.13
3227 6853 6.127793 AGAAGTAGAAGTAAGATTAGGCCGA 58.872 40.000 0.00 0.00 0.00 5.54
3228 6854 6.778559 AGAAGTAGAAGTAAGATTAGGCCGAT 59.221 38.462 0.00 0.00 0.00 4.18
3229 6855 6.334102 AGTAGAAGTAAGATTAGGCCGATG 57.666 41.667 0.00 0.00 0.00 3.84
3230 6856 5.834204 AGTAGAAGTAAGATTAGGCCGATGT 59.166 40.000 0.00 0.00 0.00 3.06
3231 6857 7.002879 AGTAGAAGTAAGATTAGGCCGATGTA 58.997 38.462 0.00 0.00 0.00 2.29
3232 6858 6.086785 AGAAGTAAGATTAGGCCGATGTAC 57.913 41.667 0.00 1.35 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.090692 AGATTATTTGCTTTGATTGTTGTATGC 57.909 29.630 0.00 0.00 0.00 3.14
264 269 5.669164 TTGTCTTTGTAATTAATGGCCCC 57.331 39.130 0.00 0.00 0.00 5.80
310 317 7.406104 AGTTAGGCCAATAGATCAACTTTCTT 58.594 34.615 5.01 0.00 0.00 2.52
350 358 3.730662 CGAAAAAGTTGAGGTGTGTGTGG 60.731 47.826 0.00 0.00 0.00 4.17
421 429 7.572523 TTATCAAGATGTTTAGGGCTTCATG 57.427 36.000 0.00 0.00 0.00 3.07
462 470 3.676291 GCAAGTTTTGGCCCTCATTTA 57.324 42.857 0.00 0.00 0.00 1.40
495 503 2.266055 GACAACCAGGAGGCCTCG 59.734 66.667 26.36 15.26 39.06 4.63
604 612 2.285718 CGTCGTCGTTTAAAGTGGCAAA 60.286 45.455 0.00 0.00 0.00 3.68
737 745 1.584175 TGTTAATGTGACAACGCGGT 58.416 45.000 12.47 0.00 0.00 5.68
905 922 2.267006 CAGCGCCCACAGAGACAT 59.733 61.111 2.29 0.00 0.00 3.06
906 923 4.687215 GCAGCGCCCACAGAGACA 62.687 66.667 2.29 0.00 0.00 3.41
949 966 6.764085 TGTGCACTTTGCCGTACTTATATATT 59.236 34.615 19.41 0.00 44.23 1.28
986 1003 4.308526 CCATCGCTGGCTCTTGTT 57.691 55.556 0.00 0.00 35.23 2.83
1501 2405 4.024302 CGAATATGTCTGAATGCATGCACT 60.024 41.667 25.37 13.62 0.00 4.40
1571 2517 2.867109 AGCACCTTATCTGCACTTGT 57.133 45.000 0.00 0.00 37.08 3.16
1575 2690 3.181496 GGCTTTAAGCACCTTATCTGCAC 60.181 47.826 19.10 0.00 44.75 4.57
1861 3981 0.537188 CGCAGTCATGTCCCTTAGGT 59.463 55.000 0.00 0.00 0.00 3.08
1862 3982 0.811616 GCGCAGTCATGTCCCTTAGG 60.812 60.000 0.30 0.00 0.00 2.69
1863 3983 0.108186 TGCGCAGTCATGTCCCTTAG 60.108 55.000 5.66 0.00 0.00 2.18
1865 3985 1.376424 CTGCGCAGTCATGTCCCTT 60.376 57.895 29.24 0.00 0.00 3.95
1868 3988 2.238847 TACCCTGCGCAGTCATGTCC 62.239 60.000 33.75 0.00 0.00 4.02
1875 3995 4.373116 CACGGTACCCTGCGCAGT 62.373 66.667 33.75 21.04 0.00 4.40
1987 4125 3.959293 TGATGTCCAGCTGATTCACATT 58.041 40.909 17.39 3.15 0.00 2.71
1995 4133 1.483827 GACTCCATGATGTCCAGCTGA 59.516 52.381 17.39 0.00 0.00 4.26
2113 4263 2.690778 GCAACGAGAATGGCGCCTT 61.691 57.895 29.70 19.97 0.00 4.35
2160 4310 1.080093 GATGACCTGTTCGGCGACA 60.080 57.895 10.16 10.55 35.61 4.35
2233 4383 2.902523 CATATCTGGCCCATCGATCAG 58.097 52.381 0.00 0.00 0.00 2.90
2238 4388 4.308526 GGCATATCTGGCCCATCG 57.691 61.111 0.00 0.00 45.87 3.84
2268 4434 6.828785 CAGGCTACTACCCATTTCATTAGTTT 59.171 38.462 0.00 0.00 0.00 2.66
2271 4437 6.174720 TCAGGCTACTACCCATTTCATTAG 57.825 41.667 0.00 0.00 0.00 1.73
2280 4446 4.101114 TCTTCAAATCAGGCTACTACCCA 58.899 43.478 0.00 0.00 0.00 4.51
2310 4476 1.595655 ACGCACGCATGTACCACAA 60.596 52.632 0.00 0.00 0.00 3.33
2312 4478 2.474266 CACGCACGCATGTACCAC 59.526 61.111 0.00 0.00 0.00 4.16
2366 4536 0.814010 GGACGGACACACTTGCAACT 60.814 55.000 0.00 0.00 0.00 3.16
2373 4543 0.608640 GAAGGATGGACGGACACACT 59.391 55.000 0.00 0.00 0.00 3.55
2452 4652 9.801873 AAATTTATATGTCTAATGCACAACCAC 57.198 29.630 0.00 0.00 0.00 4.16
2470 4670 6.849085 AATGGGGCGCATATCAAATTTATA 57.151 33.333 17.99 0.00 0.00 0.98
2482 4682 2.195683 CCCAGTAATGGGGCGCAT 59.804 61.111 20.98 11.73 45.34 4.73
2522 4930 4.825422 TCCTGCATTTGTAGAGTTCTCTG 58.175 43.478 12.00 0.00 0.00 3.35
2526 4934 5.689383 TGTTTCCTGCATTTGTAGAGTTC 57.311 39.130 0.00 0.00 0.00 3.01
2533 4941 2.948979 TCGAGTTGTTTCCTGCATTTGT 59.051 40.909 0.00 0.00 0.00 2.83
2538 4946 2.031258 TTGTCGAGTTGTTTCCTGCA 57.969 45.000 0.00 0.00 0.00 4.41
2541 4949 6.149633 GCAAAATATTGTCGAGTTGTTTCCT 58.850 36.000 0.00 0.00 38.85 3.36
2567 4975 3.876589 TTCGCCCGGTGCAGAACTC 62.877 63.158 14.17 0.00 41.33 3.01
2568 4976 3.936203 TTCGCCCGGTGCAGAACT 61.936 61.111 14.17 0.00 41.33 3.01
2569 4977 3.723348 GTTCGCCCGGTGCAGAAC 61.723 66.667 22.59 22.59 42.07 3.01
2570 4978 3.758973 TTGTTCGCCCGGTGCAGAA 62.759 57.895 14.17 13.85 41.33 3.02
2572 4980 3.726517 CTTGTTCGCCCGGTGCAG 61.727 66.667 14.17 7.73 41.33 4.41
2573 4981 4.243008 TCTTGTTCGCCCGGTGCA 62.243 61.111 14.17 0.00 41.33 4.57
2574 4982 3.723348 GTCTTGTTCGCCCGGTGC 61.723 66.667 0.00 2.24 0.00 5.01
2575 4983 2.027625 GAGTCTTGTTCGCCCGGTG 61.028 63.158 0.00 0.00 0.00 4.94
2576 4984 2.342648 GAGTCTTGTTCGCCCGGT 59.657 61.111 0.00 0.00 0.00 5.28
2578 4986 2.809601 CCGAGTCTTGTTCGCCCG 60.810 66.667 0.00 0.00 36.76 6.13
2579 4987 3.119096 GCCGAGTCTTGTTCGCCC 61.119 66.667 0.00 0.00 36.76 6.13
2594 5002 1.240256 TTACCAACATGTTCGTGGCC 58.760 50.000 17.78 0.00 0.00 5.36
2599 5007 4.870426 AGTAGCTCATTACCAACATGTTCG 59.130 41.667 8.48 4.62 0.00 3.95
2605 5013 4.693566 CGGAAAAGTAGCTCATTACCAACA 59.306 41.667 0.00 0.00 0.00 3.33
2607 5015 5.155278 TCGGAAAAGTAGCTCATTACCAA 57.845 39.130 0.00 0.00 0.00 3.67
2608 5016 4.222145 ACTCGGAAAAGTAGCTCATTACCA 59.778 41.667 0.00 0.00 0.00 3.25
2613 5021 2.234908 AGCACTCGGAAAAGTAGCTCAT 59.765 45.455 0.00 0.00 32.08 2.90
2618 5026 6.042777 TGATGATAAGCACTCGGAAAAGTAG 58.957 40.000 0.00 0.00 0.00 2.57
2625 5033 4.736126 TTTCTGATGATAAGCACTCGGA 57.264 40.909 0.00 0.00 0.00 4.55
2642 5050 4.775236 AGTGACTCTTTGCTGAGTTTTCT 58.225 39.130 8.50 5.83 46.11 2.52
2644 5052 4.775236 AGAGTGACTCTTTGCTGAGTTTT 58.225 39.130 9.77 0.00 46.11 2.43
2695 5329 1.737793 CCGTCTATGGTGGAAGTTTGC 59.262 52.381 0.00 0.00 0.00 3.68
2703 5337 2.140792 CCCCCTCCGTCTATGGTGG 61.141 68.421 2.81 2.81 41.41 4.61
2720 6000 2.119029 GCCGTTAATGGGCCACTCC 61.119 63.158 9.28 0.00 44.97 3.85
2721 6001 3.509659 GCCGTTAATGGGCCACTC 58.490 61.111 9.28 0.00 44.97 3.51
2742 6022 1.589803 GAAAGTTAGTGTGGCGTGGT 58.410 50.000 0.00 0.00 0.00 4.16
2747 6027 0.517316 CGCAGGAAAGTTAGTGTGGC 59.483 55.000 0.00 0.00 0.00 5.01
2751 6031 1.461127 GAGCACGCAGGAAAGTTAGTG 59.539 52.381 0.00 0.00 0.00 2.74
2752 6032 1.608283 GGAGCACGCAGGAAAGTTAGT 60.608 52.381 0.00 0.00 0.00 2.24
2753 6033 1.079503 GGAGCACGCAGGAAAGTTAG 58.920 55.000 0.00 0.00 0.00 2.34
2754 6034 0.321298 GGGAGCACGCAGGAAAGTTA 60.321 55.000 0.00 0.00 0.00 2.24
2773 6053 1.390123 CACAATGTTGAGTACGAGCCG 59.610 52.381 0.00 0.00 0.00 5.52
2781 6388 0.108585 AGCCGGACACAATGTTGAGT 59.891 50.000 5.05 0.00 34.69 3.41
2782 6389 0.518636 CAGCCGGACACAATGTTGAG 59.481 55.000 5.05 0.00 0.00 3.02
2794 6401 1.053424 AACTCTACAAACCAGCCGGA 58.947 50.000 5.05 0.00 35.59 5.14
2796 6403 2.225727 GGAAAACTCTACAAACCAGCCG 59.774 50.000 0.00 0.00 0.00 5.52
2801 6408 5.411977 GGCTTCTAGGAAAACTCTACAAACC 59.588 44.000 0.00 0.00 0.00 3.27
2807 6414 7.310485 CCTTACAAGGCTTCTAGGAAAACTCTA 60.310 40.741 11.53 0.00 39.76 2.43
2808 6415 4.984146 ACAAGGCTTCTAGGAAAACTCT 57.016 40.909 0.00 0.00 0.00 3.24
2810 6417 5.309806 TCCTTACAAGGCTTCTAGGAAAACT 59.690 40.000 15.47 0.00 46.06 2.66
2811 6418 5.557866 TCCTTACAAGGCTTCTAGGAAAAC 58.442 41.667 15.47 0.00 46.06 2.43
2826 6433 8.387813 ACCCATATTTGACTAGTTTCCTTACAA 58.612 33.333 0.00 0.00 0.00 2.41
2827 6434 7.924541 ACCCATATTTGACTAGTTTCCTTACA 58.075 34.615 0.00 0.00 0.00 2.41
2833 6448 8.027189 GGTTTTGACCCATATTTGACTAGTTTC 58.973 37.037 0.00 0.00 0.00 2.78
2836 6451 6.548321 TGGTTTTGACCCATATTTGACTAGT 58.452 36.000 0.00 0.00 0.00 2.57
2837 6452 7.483307 CATGGTTTTGACCCATATTTGACTAG 58.517 38.462 0.00 0.00 40.76 2.57
2852 6467 0.961019 GCCACTCTGCATGGTTTTGA 59.039 50.000 6.68 0.00 39.63 2.69
2871 6486 2.739913 TGAAAGGCATTTACCGAGTTCG 59.260 45.455 0.00 0.00 39.44 3.95
2877 6492 2.030363 TGTGCTTGAAAGGCATTTACCG 60.030 45.455 0.00 0.00 41.86 4.02
2884 6499 1.547820 TGTTTGTGTGCTTGAAAGGCA 59.452 42.857 0.00 0.00 37.36 4.75
2899 6514 2.918712 AGTGAGGAGGACACTGTTTG 57.081 50.000 0.00 0.00 45.19 2.93
2903 6518 0.811915 CGGTAGTGAGGAGGACACTG 59.188 60.000 10.24 0.00 46.15 3.66
2905 6520 1.096416 CTCGGTAGTGAGGAGGACAC 58.904 60.000 0.00 0.00 38.38 3.67
2906 6521 0.697079 ACTCGGTAGTGAGGAGGACA 59.303 55.000 0.00 0.00 40.39 4.02
2919 6534 5.248705 AGAAATCCTTAGGAAGAAACTCGGT 59.751 40.000 4.56 0.00 34.34 4.69
2920 6535 5.735766 AGAAATCCTTAGGAAGAAACTCGG 58.264 41.667 4.56 0.00 34.34 4.63
2938 6553 2.421248 GCCTGCTAGCTTCTGGAGAAAT 60.421 50.000 17.23 0.00 33.07 2.17
2942 6557 1.227205 CGCCTGCTAGCTTCTGGAG 60.227 63.158 17.23 10.54 0.00 3.86
2947 6571 0.670546 TGTCAACGCCTGCTAGCTTC 60.671 55.000 17.23 3.90 0.00 3.86
2954 6578 0.878416 TACCAATTGTCAACGCCTGC 59.122 50.000 4.43 0.00 0.00 4.85
2959 6583 4.870426 ACTCTAGCATACCAATTGTCAACG 59.130 41.667 4.43 0.00 0.00 4.10
2967 6591 3.941483 GTGTTGCACTCTAGCATACCAAT 59.059 43.478 0.00 0.00 45.19 3.16
3012 6638 8.718102 TGGTCCGAAAAATAAATTGAAAACAA 57.282 26.923 0.00 0.00 0.00 2.83
3024 6650 2.847449 TGGAGGGATGGTCCGAAAAATA 59.153 45.455 0.00 0.00 37.43 1.40
3032 6658 3.652869 TGATTTCTATGGAGGGATGGTCC 59.347 47.826 0.00 0.00 35.23 4.46
3035 6661 4.989875 AGTGATTTCTATGGAGGGATGG 57.010 45.455 0.00 0.00 0.00 3.51
3055 6681 9.524106 CATTGCCCAAATTATGCACATATATAG 57.476 33.333 0.00 0.00 34.16 1.31
3062 6688 4.548451 TTCATTGCCCAAATTATGCACA 57.452 36.364 0.00 0.00 34.16 4.57
3063 6689 4.333372 CCTTTCATTGCCCAAATTATGCAC 59.667 41.667 0.00 0.00 34.16 4.57
3064 6690 4.224594 TCCTTTCATTGCCCAAATTATGCA 59.775 37.500 0.00 0.00 0.00 3.96
3065 6691 4.768583 TCCTTTCATTGCCCAAATTATGC 58.231 39.130 0.00 0.00 0.00 3.14
3066 6692 6.823497 AGATCCTTTCATTGCCCAAATTATG 58.177 36.000 0.00 0.00 0.00 1.90
3067 6693 7.441903 AAGATCCTTTCATTGCCCAAATTAT 57.558 32.000 0.00 0.00 0.00 1.28
3068 6694 6.872585 AAGATCCTTTCATTGCCCAAATTA 57.127 33.333 0.00 0.00 0.00 1.40
3069 6695 5.767277 AAGATCCTTTCATTGCCCAAATT 57.233 34.783 0.00 0.00 0.00 1.82
3070 6696 5.721000 TGTAAGATCCTTTCATTGCCCAAAT 59.279 36.000 0.00 0.00 0.00 2.32
3071 6697 5.083122 TGTAAGATCCTTTCATTGCCCAAA 58.917 37.500 0.00 0.00 0.00 3.28
3072 6698 4.671831 TGTAAGATCCTTTCATTGCCCAA 58.328 39.130 0.00 0.00 0.00 4.12
3073 6699 4.314522 TGTAAGATCCTTTCATTGCCCA 57.685 40.909 0.00 0.00 0.00 5.36
3074 6700 4.706962 ACTTGTAAGATCCTTTCATTGCCC 59.293 41.667 0.00 0.00 0.00 5.36
3075 6701 5.415701 TCACTTGTAAGATCCTTTCATTGCC 59.584 40.000 0.00 0.00 0.00 4.52
3076 6702 6.500684 TCACTTGTAAGATCCTTTCATTGC 57.499 37.500 0.00 0.00 0.00 3.56
3077 6703 7.415989 CCCATCACTTGTAAGATCCTTTCATTG 60.416 40.741 0.00 0.00 0.00 2.82
3078 6704 6.604795 CCCATCACTTGTAAGATCCTTTCATT 59.395 38.462 0.00 0.00 0.00 2.57
3079 6705 6.125029 CCCATCACTTGTAAGATCCTTTCAT 58.875 40.000 0.00 0.00 0.00 2.57
3080 6706 5.014123 ACCCATCACTTGTAAGATCCTTTCA 59.986 40.000 0.00 0.00 0.00 2.69
3081 6707 5.501156 ACCCATCACTTGTAAGATCCTTTC 58.499 41.667 0.00 0.00 0.00 2.62
3082 6708 5.520748 ACCCATCACTTGTAAGATCCTTT 57.479 39.130 0.00 0.00 0.00 3.11
3083 6709 5.520748 AACCCATCACTTGTAAGATCCTT 57.479 39.130 0.00 0.00 0.00 3.36
3084 6710 6.831664 ATAACCCATCACTTGTAAGATCCT 57.168 37.500 0.00 0.00 0.00 3.24
3085 6711 7.283329 AGAATAACCCATCACTTGTAAGATCC 58.717 38.462 0.00 0.00 0.00 3.36
3092 6718 8.458843 CGAAAAATAGAATAACCCATCACTTGT 58.541 33.333 0.00 0.00 0.00 3.16
3093 6719 7.915397 CCGAAAAATAGAATAACCCATCACTTG 59.085 37.037 0.00 0.00 0.00 3.16
3094 6720 7.832187 TCCGAAAAATAGAATAACCCATCACTT 59.168 33.333 0.00 0.00 0.00 3.16
3095 6721 7.343357 TCCGAAAAATAGAATAACCCATCACT 58.657 34.615 0.00 0.00 0.00 3.41
3096 6722 7.562454 TCCGAAAAATAGAATAACCCATCAC 57.438 36.000 0.00 0.00 0.00 3.06
3097 6723 8.582657 TTTCCGAAAAATAGAATAACCCATCA 57.417 30.769 0.00 0.00 0.00 3.07
3100 6726 9.026121 TGATTTTCCGAAAAATAGAATAACCCA 57.974 29.630 10.27 0.00 43.48 4.51
3101 6727 9.516314 CTGATTTTCCGAAAAATAGAATAACCC 57.484 33.333 10.27 0.00 43.48 4.11
3105 6731 8.682710 CCCACTGATTTTCCGAAAAATAGAATA 58.317 33.333 19.36 0.00 43.48 1.75
3106 6732 7.547227 CCCACTGATTTTCCGAAAAATAGAAT 58.453 34.615 19.36 2.40 43.48 2.40
3107 6733 6.571537 GCCCACTGATTTTCCGAAAAATAGAA 60.572 38.462 19.36 0.00 43.48 2.10
3108 6734 5.105917 GCCCACTGATTTTCCGAAAAATAGA 60.106 40.000 19.36 0.00 43.48 1.98
3109 6735 5.102313 GCCCACTGATTTTCCGAAAAATAG 58.898 41.667 10.27 12.72 43.48 1.73
3110 6736 4.380023 CGCCCACTGATTTTCCGAAAAATA 60.380 41.667 10.27 2.43 43.48 1.40
3111 6737 3.613910 CGCCCACTGATTTTCCGAAAAAT 60.614 43.478 10.27 0.00 45.55 1.82
3112 6738 2.287909 CGCCCACTGATTTTCCGAAAAA 60.288 45.455 10.27 0.00 38.66 1.94
3113 6739 1.268352 CGCCCACTGATTTTCCGAAAA 59.732 47.619 8.71 8.71 34.41 2.29
3114 6740 0.878416 CGCCCACTGATTTTCCGAAA 59.122 50.000 0.00 0.00 0.00 3.46
3115 6741 1.582610 GCGCCCACTGATTTTCCGAA 61.583 55.000 0.00 0.00 0.00 4.30
3116 6742 2.038269 GCGCCCACTGATTTTCCGA 61.038 57.895 0.00 0.00 0.00 4.55
3117 6743 1.656818 ATGCGCCCACTGATTTTCCG 61.657 55.000 4.18 0.00 0.00 4.30
3118 6744 0.179129 CATGCGCCCACTGATTTTCC 60.179 55.000 4.18 0.00 0.00 3.13
3119 6745 0.179129 CCATGCGCCCACTGATTTTC 60.179 55.000 4.18 0.00 0.00 2.29
3120 6746 0.899717 ACCATGCGCCCACTGATTTT 60.900 50.000 4.18 0.00 0.00 1.82
3121 6747 1.304381 ACCATGCGCCCACTGATTT 60.304 52.632 4.18 0.00 0.00 2.17
3122 6748 2.048023 CACCATGCGCCCACTGATT 61.048 57.895 4.18 0.00 0.00 2.57
3123 6749 2.274948 ATCACCATGCGCCCACTGAT 62.275 55.000 4.18 3.29 0.00 2.90
3124 6750 2.970379 ATCACCATGCGCCCACTGA 61.970 57.895 4.18 0.57 0.00 3.41
3125 6751 2.438975 ATCACCATGCGCCCACTG 60.439 61.111 4.18 0.00 0.00 3.66
3126 6752 2.438975 CATCACCATGCGCCCACT 60.439 61.111 4.18 0.00 0.00 4.00
3127 6753 2.884997 TACCATCACCATGCGCCCAC 62.885 60.000 4.18 0.00 0.00 4.61
3128 6754 2.607411 CTACCATCACCATGCGCCCA 62.607 60.000 4.18 0.00 0.00 5.36
3129 6755 1.893808 CTACCATCACCATGCGCCC 60.894 63.158 4.18 0.00 0.00 6.13
3130 6756 2.546494 GCTACCATCACCATGCGCC 61.546 63.158 4.18 0.00 0.00 6.53
3131 6757 1.097547 AAGCTACCATCACCATGCGC 61.098 55.000 0.00 0.00 0.00 6.09
3132 6758 0.659427 CAAGCTACCATCACCATGCG 59.341 55.000 0.00 0.00 0.00 4.73
3133 6759 1.027357 CCAAGCTACCATCACCATGC 58.973 55.000 0.00 0.00 0.00 4.06
3134 6760 2.715749 TCCAAGCTACCATCACCATG 57.284 50.000 0.00 0.00 0.00 3.66
3135 6761 2.224378 CGATCCAAGCTACCATCACCAT 60.224 50.000 0.00 0.00 0.00 3.55
3136 6762 1.138859 CGATCCAAGCTACCATCACCA 59.861 52.381 0.00 0.00 0.00 4.17
3137 6763 1.139058 ACGATCCAAGCTACCATCACC 59.861 52.381 0.00 0.00 0.00 4.02
3138 6764 2.604046 ACGATCCAAGCTACCATCAC 57.396 50.000 0.00 0.00 0.00 3.06
3139 6765 3.181469 GGTAACGATCCAAGCTACCATCA 60.181 47.826 0.00 0.00 32.25 3.07
3140 6766 3.181469 TGGTAACGATCCAAGCTACCATC 60.181 47.826 0.00 0.00 35.95 3.51
3141 6767 2.769663 TGGTAACGATCCAAGCTACCAT 59.230 45.455 0.00 0.00 35.95 3.55
3142 6768 2.181125 TGGTAACGATCCAAGCTACCA 58.819 47.619 0.00 0.00 37.81 3.25
3143 6769 2.973694 TGGTAACGATCCAAGCTACC 57.026 50.000 0.00 0.00 42.51 3.18
3144 6770 4.054780 TCATGGTAACGATCCAAGCTAC 57.945 45.455 0.00 0.00 38.52 3.58
3145 6771 4.558697 CGATCATGGTAACGATCCAAGCTA 60.559 45.833 0.00 0.00 38.52 3.32
3146 6772 3.733337 GATCATGGTAACGATCCAAGCT 58.267 45.455 0.00 0.00 38.52 3.74
3147 6773 2.476619 CGATCATGGTAACGATCCAAGC 59.523 50.000 0.00 0.00 38.52 4.01
3148 6774 3.717707 ACGATCATGGTAACGATCCAAG 58.282 45.455 0.00 0.00 38.52 3.61
3149 6775 3.812156 ACGATCATGGTAACGATCCAA 57.188 42.857 0.00 0.00 38.52 3.53
3150 6776 3.812156 AACGATCATGGTAACGATCCA 57.188 42.857 0.00 0.00 42.51 3.41
3151 6777 3.985925 GGTAACGATCATGGTAACGATCC 59.014 47.826 0.00 0.00 42.51 3.36
3152 6778 4.613944 TGGTAACGATCATGGTAACGATC 58.386 43.478 0.00 0.00 39.22 3.69
3153 6779 4.659111 TGGTAACGATCATGGTAACGAT 57.341 40.909 0.00 0.00 39.22 3.73
3154 6780 4.098196 TCATGGTAACGATCATGGTAACGA 59.902 41.667 0.00 0.00 43.41 3.85
3155 6781 4.364860 TCATGGTAACGATCATGGTAACG 58.635 43.478 0.00 0.00 43.41 3.18
3156 6782 7.152645 ACTATCATGGTAACGATCATGGTAAC 58.847 38.462 0.00 0.00 43.41 2.50
3157 6783 7.297936 ACTATCATGGTAACGATCATGGTAA 57.702 36.000 0.00 0.00 43.41 2.85
3158 6784 6.911250 ACTATCATGGTAACGATCATGGTA 57.089 37.500 0.00 0.00 43.41 3.25
3159 6785 5.808366 ACTATCATGGTAACGATCATGGT 57.192 39.130 0.00 0.00 43.41 3.55
3160 6786 6.590292 GGTAACTATCATGGTAACGATCATGG 59.410 42.308 0.00 0.00 43.41 3.66
3161 6787 7.151976 TGGTAACTATCATGGTAACGATCATG 58.848 38.462 0.00 0.00 40.80 3.07
3162 6788 7.297936 TGGTAACTATCATGGTAACGATCAT 57.702 36.000 0.00 0.00 36.89 2.45
3163 6789 6.718522 TGGTAACTATCATGGTAACGATCA 57.281 37.500 0.00 0.00 36.89 2.92
3164 6790 8.603242 AATTGGTAACTATCATGGTAACGATC 57.397 34.615 0.00 0.00 36.89 3.69
3165 6791 8.974060 AAATTGGTAACTATCATGGTAACGAT 57.026 30.769 0.00 0.00 36.89 3.73
3166 6792 8.262227 AGAAATTGGTAACTATCATGGTAACGA 58.738 33.333 0.00 0.00 36.89 3.85
3167 6793 8.433421 AGAAATTGGTAACTATCATGGTAACG 57.567 34.615 0.00 0.00 36.89 3.18
3169 6795 9.747898 ACAAGAAATTGGTAACTATCATGGTAA 57.252 29.630 0.00 0.00 37.61 2.85
3170 6796 9.391006 GACAAGAAATTGGTAACTATCATGGTA 57.609 33.333 0.00 0.00 37.61 3.25
3171 6797 7.888021 TGACAAGAAATTGGTAACTATCATGGT 59.112 33.333 0.00 0.00 37.61 3.55
3172 6798 8.279970 TGACAAGAAATTGGTAACTATCATGG 57.720 34.615 0.00 0.00 37.61 3.66
3173 6799 9.941664 GATGACAAGAAATTGGTAACTATCATG 57.058 33.333 0.00 0.00 37.61 3.07
3174 6800 9.911788 AGATGACAAGAAATTGGTAACTATCAT 57.088 29.630 0.00 0.00 37.61 2.45
3175 6801 9.166173 CAGATGACAAGAAATTGGTAACTATCA 57.834 33.333 0.00 0.00 37.61 2.15
3176 6802 8.616076 CCAGATGACAAGAAATTGGTAACTATC 58.384 37.037 0.00 0.00 37.61 2.08
3177 6803 8.328758 TCCAGATGACAAGAAATTGGTAACTAT 58.671 33.333 0.00 0.00 37.61 2.12
3178 6804 7.685481 TCCAGATGACAAGAAATTGGTAACTA 58.315 34.615 0.00 0.00 37.61 2.24
3179 6805 6.542821 TCCAGATGACAAGAAATTGGTAACT 58.457 36.000 0.00 0.00 37.61 2.24
3180 6806 6.655003 TCTCCAGATGACAAGAAATTGGTAAC 59.345 38.462 0.00 0.00 0.00 2.50
3181 6807 6.778821 TCTCCAGATGACAAGAAATTGGTAA 58.221 36.000 0.00 0.00 0.00 2.85
3182 6808 6.373005 TCTCCAGATGACAAGAAATTGGTA 57.627 37.500 0.00 0.00 0.00 3.25
3183 6809 5.246981 TCTCCAGATGACAAGAAATTGGT 57.753 39.130 0.00 0.00 0.00 3.67
3184 6810 5.709164 ACTTCTCCAGATGACAAGAAATTGG 59.291 40.000 0.00 0.00 0.00 3.16
3185 6811 6.814506 ACTTCTCCAGATGACAAGAAATTG 57.185 37.500 0.00 0.00 0.00 2.32
3186 6812 7.911651 TCTACTTCTCCAGATGACAAGAAATT 58.088 34.615 0.00 0.00 0.00 1.82
3187 6813 7.487822 TCTACTTCTCCAGATGACAAGAAAT 57.512 36.000 0.00 0.00 0.00 2.17
3188 6814 6.918067 TCTACTTCTCCAGATGACAAGAAA 57.082 37.500 0.00 0.00 0.00 2.52
3189 6815 6.495181 ACTTCTACTTCTCCAGATGACAAGAA 59.505 38.462 0.00 0.00 0.00 2.52
3190 6816 6.013379 ACTTCTACTTCTCCAGATGACAAGA 58.987 40.000 0.00 0.00 0.00 3.02
3191 6817 6.279513 ACTTCTACTTCTCCAGATGACAAG 57.720 41.667 0.00 0.00 0.00 3.16
3192 6818 7.670140 TCTTACTTCTACTTCTCCAGATGACAA 59.330 37.037 0.00 0.00 0.00 3.18
3193 6819 7.175797 TCTTACTTCTACTTCTCCAGATGACA 58.824 38.462 0.00 0.00 0.00 3.58
3194 6820 7.633193 TCTTACTTCTACTTCTCCAGATGAC 57.367 40.000 0.00 0.00 0.00 3.06
3195 6821 8.830915 AATCTTACTTCTACTTCTCCAGATGA 57.169 34.615 0.00 0.00 0.00 2.92
3197 6823 9.362151 CCTAATCTTACTTCTACTTCTCCAGAT 57.638 37.037 0.00 0.00 0.00 2.90
3198 6824 7.285858 GCCTAATCTTACTTCTACTTCTCCAGA 59.714 40.741 0.00 0.00 0.00 3.86
3199 6825 7.430441 GCCTAATCTTACTTCTACTTCTCCAG 58.570 42.308 0.00 0.00 0.00 3.86
3200 6826 6.324254 GGCCTAATCTTACTTCTACTTCTCCA 59.676 42.308 0.00 0.00 0.00 3.86
3201 6827 6.515365 CGGCCTAATCTTACTTCTACTTCTCC 60.515 46.154 0.00 0.00 0.00 3.71
3202 6828 6.262720 TCGGCCTAATCTTACTTCTACTTCTC 59.737 42.308 0.00 0.00 0.00 2.87
3203 6829 6.127793 TCGGCCTAATCTTACTTCTACTTCT 58.872 40.000 0.00 0.00 0.00 2.85
3204 6830 6.388435 TCGGCCTAATCTTACTTCTACTTC 57.612 41.667 0.00 0.00 0.00 3.01
3205 6831 6.324254 ACATCGGCCTAATCTTACTTCTACTT 59.676 38.462 0.00 0.00 0.00 2.24
3206 6832 5.834204 ACATCGGCCTAATCTTACTTCTACT 59.166 40.000 0.00 0.00 0.00 2.57
3207 6833 6.086785 ACATCGGCCTAATCTTACTTCTAC 57.913 41.667 0.00 0.00 0.00 2.59
3208 6834 7.211966 GTACATCGGCCTAATCTTACTTCTA 57.788 40.000 0.00 0.00 0.00 2.10
3209 6835 6.086785 GTACATCGGCCTAATCTTACTTCT 57.913 41.667 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.