Multiple sequence alignment - TraesCS3B01G012000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G012000 chr3B 100.000 2381 0 0 1 2381 5405106 5407486 0.000000e+00 4397.0
1 TraesCS3B01G012000 chr3B 87.028 794 69 18 620 1392 3310679 3309899 0.000000e+00 865.0
2 TraesCS3B01G012000 chr3B 91.420 338 24 3 567 901 5373357 5373692 2.160000e-125 459.0
3 TraesCS3B01G012000 chr3B 93.717 191 9 1 1712 1902 3309693 3309506 1.390000e-72 283.0
4 TraesCS3B01G012000 chr3B 85.714 210 20 5 1947 2150 3309509 3309304 1.850000e-51 213.0
5 TraesCS3B01G012000 chr3B 88.462 104 4 4 1 96 5328597 5328700 4.160000e-23 119.0
6 TraesCS3B01G012000 chr3B 89.873 79 5 2 1 76 3402204 3402126 5.420000e-17 99.0
7 TraesCS3B01G012000 chr3D 82.710 1336 118 48 587 1902 1318200 1316958 0.000000e+00 1083.0
8 TraesCS3B01G012000 chr3A 82.561 1187 99 46 710 1879 7653096 7654191 0.000000e+00 946.0
9 TraesCS3B01G012000 chr3A 78.443 501 45 28 1916 2381 7654347 7654819 3.900000e-68 268.0
10 TraesCS3B01G012000 chr3A 82.295 305 35 9 110 408 7650796 7651087 1.830000e-61 246.0
11 TraesCS3B01G012000 chr3A 83.696 92 9 3 39 124 7650679 7650770 5.450000e-12 82.4
12 TraesCS3B01G012000 chr5B 90.323 279 15 6 1626 1902 528388276 528388544 2.910000e-94 355.0
13 TraesCS3B01G012000 chr6B 89.627 241 14 5 1663 1902 682368366 682368596 1.790000e-76 296.0
14 TraesCS3B01G012000 chr7A 81.170 393 40 23 985 1372 653264596 653264959 3.870000e-73 285.0
15 TraesCS3B01G012000 chr7A 84.667 150 12 7 1631 1775 310580531 310580674 3.190000e-29 139.0
16 TraesCS3B01G012000 chr6A 80.662 393 42 20 985 1372 87535135 87534772 8.380000e-70 274.0
17 TraesCS3B01G012000 chr6A 84.667 150 12 6 1631 1775 87534595 87534452 3.190000e-29 139.0
18 TraesCS3B01G012000 chr1D 88.596 228 17 5 1017 1240 46107117 46107339 3.900000e-68 268.0
19 TraesCS3B01G012000 chr5A 87.793 213 20 2 1015 1224 705529283 705529492 6.570000e-61 244.0
20 TraesCS3B01G012000 chr4A 80.547 329 39 15 985 1309 682035508 682035815 1.840000e-56 230.0
21 TraesCS3B01G012000 chr4A 83.784 148 13 6 1631 1773 682036035 682036176 1.920000e-26 130.0
22 TraesCS3B01G012000 chr4A 83.333 150 14 6 1631 1775 101823068 101822925 6.910000e-26 128.0
23 TraesCS3B01G012000 chr7B 84.649 228 26 4 1017 1240 215233773 215233551 3.980000e-53 219.0
24 TraesCS3B01G012000 chr1B 82.743 226 26 9 1016 1240 49096216 49096003 3.120000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G012000 chr3B 5405106 5407486 2380 False 4397.000000 4397 100.000000 1 2381 1 chr3B.!!$F3 2380
1 TraesCS3B01G012000 chr3B 3309304 3310679 1375 True 453.666667 865 88.819667 620 2150 3 chr3B.!!$R2 1530
2 TraesCS3B01G012000 chr3D 1316958 1318200 1242 True 1083.000000 1083 82.710000 587 1902 1 chr3D.!!$R1 1315
3 TraesCS3B01G012000 chr3A 7650679 7654819 4140 False 385.600000 946 81.748750 39 2381 4 chr3A.!!$F1 2342
4 TraesCS3B01G012000 chr6A 87534452 87535135 683 True 206.500000 274 82.664500 985 1775 2 chr6A.!!$R1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 507 0.034896 AACCGCTTCATCCGTTGACT 59.965 50.0 0.0 0.0 32.84 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 3245 0.185175 TGGGCGAGCCATAGAGACTA 59.815 55.0 16.65 0.0 37.98 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.533625 TGATTCGGAAAGGCACCTTG 58.466 50.000 1.91 0.00 36.26 3.61
20 21 0.171231 GATTCGGAAAGGCACCTTGC 59.829 55.000 1.91 0.00 44.08 4.01
21 22 0.251341 ATTCGGAAAGGCACCTTGCT 60.251 50.000 7.36 0.00 44.28 3.91
22 23 0.467290 TTCGGAAAGGCACCTTGCTT 60.467 50.000 7.36 0.00 44.28 3.91
23 24 0.467290 TCGGAAAGGCACCTTGCTTT 60.467 50.000 7.36 0.00 44.88 3.51
24 25 0.318955 CGGAAAGGCACCTTGCTTTG 60.319 55.000 7.36 0.00 42.03 2.77
25 26 0.601046 GGAAAGGCACCTTGCTTTGC 60.601 55.000 7.36 0.00 42.03 3.68
26 27 0.390492 GAAAGGCACCTTGCTTTGCT 59.610 50.000 1.91 0.00 42.03 3.91
27 28 0.832626 AAAGGCACCTTGCTTTGCTT 59.167 45.000 1.91 0.00 42.03 3.91
28 29 0.105408 AAGGCACCTTGCTTTGCTTG 59.895 50.000 0.00 0.00 41.29 4.01
29 30 1.957695 GGCACCTTGCTTTGCTTGC 60.958 57.895 0.00 0.00 44.28 4.01
30 31 1.068585 GCACCTTGCTTTGCTTGCT 59.931 52.632 0.00 0.00 40.96 3.91
31 32 0.531311 GCACCTTGCTTTGCTTGCTT 60.531 50.000 0.00 0.00 40.96 3.91
32 33 1.494824 CACCTTGCTTTGCTTGCTTC 58.505 50.000 0.00 0.00 0.00 3.86
33 34 1.113788 ACCTTGCTTTGCTTGCTTCA 58.886 45.000 0.00 0.00 0.00 3.02
34 35 1.481772 ACCTTGCTTTGCTTGCTTCAA 59.518 42.857 0.00 0.00 0.00 2.69
35 36 1.862827 CCTTGCTTTGCTTGCTTCAAC 59.137 47.619 0.00 0.00 0.00 3.18
36 37 2.542597 CTTGCTTTGCTTGCTTCAACA 58.457 42.857 0.00 0.00 0.00 3.33
37 38 2.669300 TGCTTTGCTTGCTTCAACAA 57.331 40.000 0.00 0.00 0.00 2.83
39 40 1.862827 GCTTTGCTTGCTTCAACAAGG 59.137 47.619 6.42 0.00 45.83 3.61
40 41 2.481795 GCTTTGCTTGCTTCAACAAGGA 60.482 45.455 6.42 0.51 45.83 3.36
41 42 2.869233 TTGCTTGCTTCAACAAGGAC 57.131 45.000 6.42 0.00 46.05 3.85
42 43 0.662619 TGCTTGCTTCAACAAGGACG 59.337 50.000 6.42 0.00 45.83 4.79
43 44 0.944386 GCTTGCTTCAACAAGGACGA 59.056 50.000 6.42 0.00 45.83 4.20
46 47 1.808411 TGCTTCAACAAGGACGATCC 58.192 50.000 0.00 0.00 36.58 3.36
76 77 0.740149 CAACAGGCAACAGCAGTTCA 59.260 50.000 0.00 0.00 35.28 3.18
80 81 0.956633 AGGCAACAGCAGTTCATGTG 59.043 50.000 0.00 0.00 35.28 3.21
81 82 0.670162 GGCAACAGCAGTTCATGTGT 59.330 50.000 0.00 0.00 35.28 3.72
84 90 2.121786 CAACAGCAGTTCATGTGTTGC 58.878 47.619 10.53 9.81 40.57 4.17
97 103 1.339535 TGTGTTGCAACTGACCAGACA 60.340 47.619 28.61 19.47 0.00 3.41
99 105 1.209261 TGTTGCAACTGACCAGACAGA 59.791 47.619 28.61 2.43 40.63 3.41
100 106 1.869767 GTTGCAACTGACCAGACAGAG 59.130 52.381 22.36 0.00 40.63 3.35
101 107 0.250038 TGCAACTGACCAGACAGAGC 60.250 55.000 3.76 7.90 40.63 4.09
102 108 0.250038 GCAACTGACCAGACAGAGCA 60.250 55.000 3.76 0.00 40.63 4.26
103 109 1.610102 GCAACTGACCAGACAGAGCAT 60.610 52.381 3.76 0.00 40.63 3.79
104 110 2.344950 CAACTGACCAGACAGAGCATC 58.655 52.381 3.76 0.00 40.63 3.91
106 112 0.900421 CTGACCAGACAGAGCATCCA 59.100 55.000 0.00 0.00 39.94 3.41
107 113 0.610174 TGACCAGACAGAGCATCCAC 59.390 55.000 0.00 0.00 33.66 4.02
108 114 0.459237 GACCAGACAGAGCATCCACG 60.459 60.000 0.00 0.00 33.66 4.94
137 184 5.237815 TCGAGATGTTACTGAGCAAACAAT 58.762 37.500 5.26 0.00 38.95 2.71
163 210 5.183228 TGACAGACAGATACATAGTCGTCA 58.817 41.667 0.48 0.48 40.18 4.35
170 217 7.553402 AGACAGATACATAGTCGTCAGTTACTT 59.447 37.037 0.00 0.00 37.36 2.24
171 218 8.728337 ACAGATACATAGTCGTCAGTTACTTA 57.272 34.615 0.00 0.00 0.00 2.24
172 219 8.828644 ACAGATACATAGTCGTCAGTTACTTAG 58.171 37.037 0.00 0.00 0.00 2.18
173 220 9.043079 CAGATACATAGTCGTCAGTTACTTAGA 57.957 37.037 0.00 0.00 0.00 2.10
174 221 9.263538 AGATACATAGTCGTCAGTTACTTAGAG 57.736 37.037 0.00 0.00 0.00 2.43
178 225 8.040132 ACATAGTCGTCAGTTACTTAGAGTACT 58.960 37.037 0.00 0.00 28.93 2.73
196 243 3.845781 ACTTGTCATTGGTGTCACTCT 57.154 42.857 2.35 0.00 0.00 3.24
197 244 3.733337 ACTTGTCATTGGTGTCACTCTC 58.267 45.455 2.35 0.00 0.00 3.20
199 246 3.111853 TGTCATTGGTGTCACTCTCAC 57.888 47.619 2.35 0.00 35.36 3.51
241 288 1.067582 GTGATCCATCCGTCCGTCC 59.932 63.158 0.00 0.00 0.00 4.79
251 298 1.951602 TCCGTCCGTCCATGTATACTG 59.048 52.381 4.17 0.32 0.00 2.74
265 312 4.993905 TGTATACTGACATCAACGGACTG 58.006 43.478 4.17 0.00 0.00 3.51
270 317 2.989840 CTGACATCAACGGACTGAAGAC 59.010 50.000 0.00 0.00 0.00 3.01
275 322 0.232303 CAACGGACTGAAGACGCAAC 59.768 55.000 0.00 0.00 0.00 4.17
276 323 0.179094 AACGGACTGAAGACGCAACA 60.179 50.000 0.00 0.00 0.00 3.33
277 324 0.874607 ACGGACTGAAGACGCAACAC 60.875 55.000 0.00 0.00 0.00 3.32
294 341 2.043625 ACGCAAGGGACTACGACAA 58.956 52.632 0.00 0.00 38.49 3.18
298 345 1.203994 GCAAGGGACTACGACAAGCTA 59.796 52.381 0.00 0.00 38.49 3.32
299 346 2.159085 GCAAGGGACTACGACAAGCTAT 60.159 50.000 0.00 0.00 38.49 2.97
302 349 5.739358 GCAAGGGACTACGACAAGCTATATT 60.739 44.000 0.00 0.00 38.49 1.28
311 358 4.034510 ACGACAAGCTATATTTGCTGCTTC 59.965 41.667 0.00 1.81 42.89 3.86
321 368 0.586319 TTGCTGCTTCCGTTTTCTCG 59.414 50.000 0.00 0.00 0.00 4.04
333 380 3.363970 CCGTTTTCTCGGTTCATCAACTG 60.364 47.826 0.00 0.00 44.77 3.16
340 387 6.280855 TCTCGGTTCATCAACTGAAGATAA 57.719 37.500 0.00 0.00 45.54 1.75
341 388 6.878317 TCTCGGTTCATCAACTGAAGATAAT 58.122 36.000 0.00 0.00 45.54 1.28
343 390 8.474831 TCTCGGTTCATCAACTGAAGATAATAA 58.525 33.333 0.00 0.00 45.54 1.40
344 391 9.265901 CTCGGTTCATCAACTGAAGATAATAAT 57.734 33.333 0.00 0.00 45.54 1.28
345 392 9.045223 TCGGTTCATCAACTGAAGATAATAATG 57.955 33.333 0.00 0.00 43.71 1.90
346 393 7.800380 CGGTTCATCAACTGAAGATAATAATGC 59.200 37.037 0.00 0.00 44.44 3.56
347 394 8.623903 GGTTCATCAACTGAAGATAATAATGCA 58.376 33.333 0.00 0.00 44.44 3.96
348 395 9.661187 GTTCATCAACTGAAGATAATAATGCAG 57.339 33.333 0.00 0.00 44.44 4.41
364 417 0.782384 GCAGTGACGTTTGGTAGACG 59.218 55.000 0.00 0.00 45.46 4.18
367 420 2.030893 CAGTGACGTTTGGTAGACGGTA 60.031 50.000 0.00 0.00 44.34 4.02
369 422 2.030805 GTGACGTTTGGTAGACGGTAGT 60.031 50.000 0.00 0.00 44.34 2.73
377 430 4.142609 TGGTAGACGGTAGTACCTGTAG 57.857 50.000 17.29 4.20 35.66 2.74
384 437 6.947464 AGACGGTAGTACCTGTAGTTAACTA 58.053 40.000 17.29 11.38 35.66 2.24
387 440 7.168905 ACGGTAGTACCTGTAGTTAACTAACT 58.831 38.462 16.82 16.92 41.80 2.24
388 441 7.334671 ACGGTAGTACCTGTAGTTAACTAACTC 59.665 40.741 16.82 5.91 39.86 3.01
422 490 2.670401 CTTCAGTTCGGTGAAGCAAC 57.330 50.000 9.26 0.00 45.22 4.17
423 491 1.264288 CTTCAGTTCGGTGAAGCAACC 59.736 52.381 9.26 0.00 45.22 3.77
439 507 0.034896 AACCGCTTCATCCGTTGACT 59.965 50.000 0.00 0.00 32.84 3.41
440 508 0.389948 ACCGCTTCATCCGTTGACTC 60.390 55.000 0.00 0.00 32.84 3.36
441 509 1.084370 CCGCTTCATCCGTTGACTCC 61.084 60.000 0.00 0.00 32.84 3.85
447 528 2.707849 ATCCGTTGACTCCCCGTCG 61.708 63.158 0.00 0.00 45.87 5.12
450 531 3.998672 GTTGACTCCCCGTCGCCA 61.999 66.667 0.00 0.00 45.87 5.69
451 532 3.998672 TTGACTCCCCGTCGCCAC 61.999 66.667 0.00 0.00 45.87 5.01
455 536 2.032071 CTCCCCGTCGCCACTTTT 59.968 61.111 0.00 0.00 0.00 2.27
458 539 2.032071 CCCGTCGCCACTTTTCCT 59.968 61.111 0.00 0.00 0.00 3.36
459 540 2.325082 CCCGTCGCCACTTTTCCTG 61.325 63.158 0.00 0.00 0.00 3.86
463 544 1.149148 GTCGCCACTTTTCCTGTCTC 58.851 55.000 0.00 0.00 0.00 3.36
468 549 2.810852 GCCACTTTTCCTGTCTCTTCTG 59.189 50.000 0.00 0.00 0.00 3.02
473 554 4.759183 ACTTTTCCTGTCTCTTCTGCAATC 59.241 41.667 0.00 0.00 0.00 2.67
476 557 2.008329 CCTGTCTCTTCTGCAATCAGC 58.992 52.381 0.00 0.00 45.96 4.26
485 566 3.211963 GCAATCAGCGCCCGGATT 61.212 61.111 0.73 8.84 36.50 3.01
486 567 2.774799 GCAATCAGCGCCCGGATTT 61.775 57.895 14.60 1.63 34.32 2.17
487 568 1.444119 GCAATCAGCGCCCGGATTTA 61.444 55.000 14.60 0.00 34.32 1.40
488 569 1.238439 CAATCAGCGCCCGGATTTAT 58.762 50.000 14.60 0.00 34.32 1.40
489 570 1.608590 CAATCAGCGCCCGGATTTATT 59.391 47.619 14.60 0.00 34.32 1.40
490 571 1.981256 ATCAGCGCCCGGATTTATTT 58.019 45.000 0.73 0.00 0.00 1.40
491 572 1.757682 TCAGCGCCCGGATTTATTTT 58.242 45.000 0.73 0.00 0.00 1.82
493 574 1.403679 CAGCGCCCGGATTTATTTTCA 59.596 47.619 0.73 0.00 0.00 2.69
494 575 2.096248 AGCGCCCGGATTTATTTTCAA 58.904 42.857 0.73 0.00 0.00 2.69
497 578 3.839293 CGCCCGGATTTATTTTCAACAA 58.161 40.909 0.73 0.00 0.00 2.83
498 579 4.238514 CGCCCGGATTTATTTTCAACAAA 58.761 39.130 0.73 0.00 0.00 2.83
499 580 4.867608 CGCCCGGATTTATTTTCAACAAAT 59.132 37.500 0.73 0.00 0.00 2.32
500 581 5.005299 CGCCCGGATTTATTTTCAACAAATC 59.995 40.000 0.73 0.00 37.75 2.17
508 589 9.487790 GATTTATTTTCAACAAATCCTTGACCA 57.512 29.630 0.00 0.00 36.33 4.02
510 591 9.844257 TTTATTTTCAACAAATCCTTGACCATT 57.156 25.926 0.00 0.00 36.33 3.16
511 592 9.844257 TTATTTTCAACAAATCCTTGACCATTT 57.156 25.926 0.00 0.00 36.33 2.32
512 593 7.551035 TTTTCAACAAATCCTTGACCATTTG 57.449 32.000 3.40 3.40 43.05 2.32
513 594 6.477053 TTCAACAAATCCTTGACCATTTGA 57.523 33.333 10.56 0.00 40.89 2.69
514 595 6.088016 TCAACAAATCCTTGACCATTTGAG 57.912 37.500 10.56 4.19 40.89 3.02
515 596 4.525912 ACAAATCCTTGACCATTTGAGC 57.474 40.909 10.56 0.00 40.89 4.26
516 597 3.259123 ACAAATCCTTGACCATTTGAGCC 59.741 43.478 10.56 0.00 40.89 4.70
517 598 2.149973 ATCCTTGACCATTTGAGCCC 57.850 50.000 0.00 0.00 0.00 5.19
518 599 1.075601 TCCTTGACCATTTGAGCCCT 58.924 50.000 0.00 0.00 0.00 5.19
519 600 2.274542 TCCTTGACCATTTGAGCCCTA 58.725 47.619 0.00 0.00 0.00 3.53
520 601 2.647299 TCCTTGACCATTTGAGCCCTAA 59.353 45.455 0.00 0.00 0.00 2.69
521 602 3.075283 TCCTTGACCATTTGAGCCCTAAA 59.925 43.478 0.00 0.00 0.00 1.85
522 603 3.831911 CCTTGACCATTTGAGCCCTAAAA 59.168 43.478 0.00 0.00 0.00 1.52
523 604 4.082026 CCTTGACCATTTGAGCCCTAAAAG 60.082 45.833 0.00 0.00 0.00 2.27
524 605 4.380843 TGACCATTTGAGCCCTAAAAGA 57.619 40.909 0.00 0.00 0.00 2.52
525 606 4.934356 TGACCATTTGAGCCCTAAAAGAT 58.066 39.130 0.00 0.00 0.00 2.40
526 607 4.706476 TGACCATTTGAGCCCTAAAAGATG 59.294 41.667 0.00 0.00 0.00 2.90
527 608 3.448660 ACCATTTGAGCCCTAAAAGATGC 59.551 43.478 0.00 0.00 0.00 3.91
528 609 3.703052 CCATTTGAGCCCTAAAAGATGCT 59.297 43.478 0.00 0.00 36.62 3.79
529 610 4.441079 CCATTTGAGCCCTAAAAGATGCTG 60.441 45.833 0.00 0.00 33.41 4.41
530 611 3.439857 TTGAGCCCTAAAAGATGCTGT 57.560 42.857 0.00 0.00 33.41 4.40
531 612 2.715046 TGAGCCCTAAAAGATGCTGTG 58.285 47.619 0.00 0.00 33.41 3.66
532 613 1.403323 GAGCCCTAAAAGATGCTGTGC 59.597 52.381 0.00 0.00 33.41 4.57
533 614 1.005215 AGCCCTAAAAGATGCTGTGCT 59.995 47.619 0.00 0.00 31.70 4.40
534 615 1.133790 GCCCTAAAAGATGCTGTGCTG 59.866 52.381 0.00 0.00 0.00 4.41
535 616 2.440409 CCCTAAAAGATGCTGTGCTGT 58.560 47.619 0.00 0.00 0.00 4.40
536 617 2.163010 CCCTAAAAGATGCTGTGCTGTG 59.837 50.000 0.00 0.00 0.00 3.66
537 618 2.163010 CCTAAAAGATGCTGTGCTGTGG 59.837 50.000 0.00 0.00 0.00 4.17
538 619 0.316204 AAAAGATGCTGTGCTGTGGC 59.684 50.000 0.00 0.00 39.26 5.01
557 638 2.350102 GGCAAACTTACCTTCCGTTTCG 60.350 50.000 0.00 0.00 0.00 3.46
558 639 2.545106 GCAAACTTACCTTCCGTTTCGA 59.455 45.455 0.00 0.00 0.00 3.71
559 640 3.187842 GCAAACTTACCTTCCGTTTCGAT 59.812 43.478 0.00 0.00 0.00 3.59
560 641 4.708601 CAAACTTACCTTCCGTTTCGATG 58.291 43.478 0.00 0.00 0.00 3.84
561 642 2.968675 ACTTACCTTCCGTTTCGATGG 58.031 47.619 0.00 0.00 34.11 3.51
575 656 1.273327 TCGATGGATGGATGGATGTCG 59.727 52.381 0.00 0.00 0.00 4.35
578 659 0.394192 TGGATGGATGGATGTCGCTC 59.606 55.000 0.00 0.00 0.00 5.03
581 662 2.141517 GATGGATGGATGTCGCTCTTG 58.858 52.381 0.00 0.00 0.00 3.02
606 687 2.039418 TGTCACTTGTCACCACTAGCT 58.961 47.619 0.00 0.00 0.00 3.32
607 688 3.227614 TGTCACTTGTCACCACTAGCTA 58.772 45.455 0.00 0.00 0.00 3.32
610 691 1.202582 ACTTGTCACCACTAGCTAGCG 59.797 52.381 20.91 11.39 0.00 4.26
611 692 0.108804 TTGTCACCACTAGCTAGCGC 60.109 55.000 20.91 0.00 0.00 5.92
724 2544 3.081804 CACCCGAGCTTAATTGGAAACT 58.918 45.455 0.00 0.00 0.00 2.66
726 2546 2.683362 CCCGAGCTTAATTGGAAACTCC 59.317 50.000 0.00 0.00 36.96 3.85
727 2547 3.343617 CCGAGCTTAATTGGAAACTCCA 58.656 45.455 0.00 0.00 46.61 3.86
744 2564 0.038455 CCAATCACCCCAAACCCGTA 59.962 55.000 0.00 0.00 0.00 4.02
897 2733 2.202743 GCACCACGCTCATCGCTA 60.203 61.111 0.00 0.00 43.23 4.26
898 2734 2.517450 GCACCACGCTCATCGCTAC 61.517 63.158 0.00 0.00 43.23 3.58
899 2735 1.153842 CACCACGCTCATCGCTACA 60.154 57.895 0.00 0.00 43.23 2.74
900 2736 1.139734 ACCACGCTCATCGCTACAG 59.860 57.895 0.00 0.00 43.23 2.74
901 2737 2.233654 CCACGCTCATCGCTACAGC 61.234 63.158 0.00 0.00 43.23 4.40
1004 2849 2.936570 GCGATCGGCTGAAGATGCG 61.937 63.158 18.30 0.00 39.11 4.73
1389 3237 0.614979 TCCTGCACTAGTGACCCTCC 60.615 60.000 27.08 7.97 0.00 4.30
1392 3240 0.614979 TGCACTAGTGACCCTCCCTC 60.615 60.000 27.08 5.76 0.00 4.30
1393 3241 0.324830 GCACTAGTGACCCTCCCTCT 60.325 60.000 27.08 0.00 0.00 3.69
1397 3245 1.850345 CTAGTGACCCTCCCTCTCTCT 59.150 57.143 0.00 0.00 0.00 3.10
1398 3246 1.988539 AGTGACCCTCCCTCTCTCTA 58.011 55.000 0.00 0.00 0.00 2.43
1399 3247 1.850345 AGTGACCCTCCCTCTCTCTAG 59.150 57.143 0.00 0.00 0.00 2.43
1400 3248 1.567175 GTGACCCTCCCTCTCTCTAGT 59.433 57.143 0.00 0.00 0.00 2.57
1401 3249 1.847737 TGACCCTCCCTCTCTCTAGTC 59.152 57.143 0.00 0.00 0.00 2.59
1405 3253 3.050876 ACCCTCCCTCTCTCTAGTCTCTA 60.051 52.174 0.00 0.00 0.00 2.43
1443 3291 4.040952 AGCCCTGTAGATTGATGGATGTAC 59.959 45.833 0.00 0.00 0.00 2.90
1447 3296 6.393990 CCTGTAGATTGATGGATGTACTAGC 58.606 44.000 0.00 0.00 29.74 3.42
1454 3303 1.763968 TGGATGTACTAGCTGCGAGT 58.236 50.000 19.05 19.05 0.00 4.18
1463 3312 1.406898 CTAGCTGCGAGTTCATCAGGA 59.593 52.381 0.00 0.00 0.00 3.86
1464 3313 0.175302 AGCTGCGAGTTCATCAGGAG 59.825 55.000 0.00 0.00 0.00 3.69
1467 3316 1.880340 GCGAGTTCATCAGGAGGCG 60.880 63.158 0.00 0.00 0.00 5.52
1468 3317 1.880340 CGAGTTCATCAGGAGGCGC 60.880 63.158 0.00 0.00 0.00 6.53
1520 3389 5.649831 AGGTCTTGATTTCAATTCAGTAGGC 59.350 40.000 0.00 0.00 35.02 3.93
1557 3432 2.631384 TCTGAGAAGGATTGGTTGGGA 58.369 47.619 0.00 0.00 0.00 4.37
1603 3480 5.771153 TGTTGCTCTGATTGATTTGTTCA 57.229 34.783 0.00 0.00 0.00 3.18
1604 3481 5.522456 TGTTGCTCTGATTGATTTGTTCAC 58.478 37.500 0.00 0.00 32.84 3.18
1623 3500 3.266772 TCACTCATGGAGGCCATAACTTT 59.733 43.478 5.01 0.00 43.15 2.66
1627 3504 5.652452 ACTCATGGAGGCCATAACTTTTAAC 59.348 40.000 5.01 0.00 43.15 2.01
1659 3540 0.034767 CTGAATTCTGGGGCTCTGCA 60.035 55.000 7.05 0.00 0.00 4.41
1673 3559 5.513788 GGGGCTCTGCAAGATCTGATAATAA 60.514 44.000 0.00 0.00 45.62 1.40
1674 3560 6.179040 GGGCTCTGCAAGATCTGATAATAAT 58.821 40.000 0.00 0.00 45.62 1.28
1675 3561 7.334090 GGGCTCTGCAAGATCTGATAATAATA 58.666 38.462 0.00 0.00 45.62 0.98
1676 3562 7.495279 GGGCTCTGCAAGATCTGATAATAATAG 59.505 40.741 0.00 0.00 45.62 1.73
1677 3563 8.256605 GGCTCTGCAAGATCTGATAATAATAGA 58.743 37.037 0.00 0.00 45.62 1.98
1736 3630 5.819379 GGTGCTTTATGAGATGTTGAGATGA 59.181 40.000 0.00 0.00 0.00 2.92
1737 3631 6.485984 GGTGCTTTATGAGATGTTGAGATGAT 59.514 38.462 0.00 0.00 0.00 2.45
1738 3632 7.353497 GTGCTTTATGAGATGTTGAGATGATG 58.647 38.462 0.00 0.00 0.00 3.07
1819 3716 3.005897 CAGCACTGTTGGACACTAGTACT 59.994 47.826 0.00 0.00 0.00 2.73
1823 3720 5.105877 GCACTGTTGGACACTAGTACTATCA 60.106 44.000 2.33 0.00 0.00 2.15
1825 3722 7.197017 CACTGTTGGACACTAGTACTATCATC 58.803 42.308 2.33 1.39 0.00 2.92
1827 3724 7.616150 ACTGTTGGACACTAGTACTATCATCTT 59.384 37.037 2.33 0.00 0.00 2.40
1830 3727 8.900781 GTTGGACACTAGTACTATCATCTTGTA 58.099 37.037 2.33 0.00 0.00 2.41
1831 3728 8.447924 TGGACACTAGTACTATCATCTTGTAC 57.552 38.462 2.33 2.43 36.63 2.90
1832 3729 8.272889 TGGACACTAGTACTATCATCTTGTACT 58.727 37.037 2.33 9.47 44.86 2.73
1840 3737 9.111613 AGTACTATCATCTTGTACTACTGTCAC 57.888 37.037 0.00 0.00 42.28 3.67
1852 3749 2.275134 ACTGTCACACATGGCAATGA 57.725 45.000 8.45 0.12 40.79 2.57
1902 3799 1.609208 CTTGGTCAGTTCTTGGGGTG 58.391 55.000 0.00 0.00 0.00 4.61
1904 3801 1.809133 TGGTCAGTTCTTGGGGTGTA 58.191 50.000 0.00 0.00 0.00 2.90
1905 3802 1.697432 TGGTCAGTTCTTGGGGTGTAG 59.303 52.381 0.00 0.00 0.00 2.74
1909 3806 0.400594 AGTTCTTGGGGTGTAGGTGC 59.599 55.000 0.00 0.00 0.00 5.01
1910 3807 0.608308 GTTCTTGGGGTGTAGGTGCC 60.608 60.000 0.00 0.00 0.00 5.01
1911 3808 1.785353 TTCTTGGGGTGTAGGTGCCC 61.785 60.000 0.00 0.00 44.09 5.36
1914 3811 3.087906 GGGGTGTAGGTGCCCGAT 61.088 66.667 0.00 0.00 45.74 4.18
1922 3938 2.172505 TGTAGGTGCCCGATTCATTCAT 59.827 45.455 0.00 0.00 0.00 2.57
1923 3939 2.442236 AGGTGCCCGATTCATTCATT 57.558 45.000 0.00 0.00 0.00 2.57
1924 3940 2.301346 AGGTGCCCGATTCATTCATTC 58.699 47.619 0.00 0.00 0.00 2.67
1936 3952 9.229784 CCGATTCATTCATTCATAACTGAAAAG 57.770 33.333 0.00 0.00 44.29 2.27
1945 3961 9.958180 TCATTCATAACTGAAAAGTAATCTGGA 57.042 29.630 0.00 0.00 44.29 3.86
1947 3963 8.792830 TTCATAACTGAAAAGTAATCTGGAGG 57.207 34.615 0.00 0.00 38.43 4.30
1948 3964 7.338710 TCATAACTGAAAAGTAATCTGGAGGG 58.661 38.462 0.00 0.00 0.00 4.30
1949 3965 5.584551 AACTGAAAAGTAATCTGGAGGGT 57.415 39.130 0.00 0.00 0.00 4.34
1999 4015 7.886338 AGAACAAGAAAATCAATACTGAACCC 58.114 34.615 0.00 0.00 34.49 4.11
2011 4027 1.274447 ACTGAACCCACGGTTACTAGC 59.726 52.381 0.00 0.00 46.95 3.42
2014 4030 0.036671 AACCCACGGTTACTAGCAGC 60.037 55.000 0.00 0.00 44.94 5.25
2050 4070 0.818040 GCACCACCGGTTCAGTTTCT 60.818 55.000 2.97 0.00 31.02 2.52
2083 4103 6.141844 CACGAATGAATGAATTAATGCAGCTC 59.858 38.462 1.84 2.25 0.00 4.09
2105 4125 3.607775 CGAAATGAATAGGAGCATTGCCG 60.608 47.826 4.70 0.00 35.11 5.69
2108 4128 2.288666 TGAATAGGAGCATTGCCGAAC 58.711 47.619 4.70 0.00 0.00 3.95
2130 4152 4.588528 ACACCACCATCAAAGCAAATTAGT 59.411 37.500 0.00 0.00 0.00 2.24
2153 4175 2.899900 GCCCCATCAAGAAAGAAACCTT 59.100 45.455 0.00 0.00 0.00 3.50
2160 4182 5.494632 TCAAGAAAGAAACCTTTCCGTTC 57.505 39.130 12.64 4.48 46.61 3.95
2165 4187 1.501337 GAAACCTTTCCGTTCGGCGT 61.501 55.000 6.85 0.00 39.32 5.68
2181 4217 1.244019 GCGTCAAGGCCTCAACCAAT 61.244 55.000 5.23 0.00 0.00 3.16
2182 4218 0.804989 CGTCAAGGCCTCAACCAATC 59.195 55.000 5.23 0.00 0.00 2.67
2183 4219 1.177401 GTCAAGGCCTCAACCAATCC 58.823 55.000 5.23 0.00 0.00 3.01
2184 4220 0.776810 TCAAGGCCTCAACCAATCCA 59.223 50.000 5.23 0.00 0.00 3.41
2185 4221 1.146774 TCAAGGCCTCAACCAATCCAA 59.853 47.619 5.23 0.00 0.00 3.53
2186 4222 2.181975 CAAGGCCTCAACCAATCCAAT 58.818 47.619 5.23 0.00 0.00 3.16
2187 4223 2.149973 AGGCCTCAACCAATCCAATC 57.850 50.000 0.00 0.00 0.00 2.67
2204 4240 3.012518 CAATCCTCTCACCATCACCAAC 58.987 50.000 0.00 0.00 0.00 3.77
2209 4245 3.118775 CCTCTCACCATCACCAACGAATA 60.119 47.826 0.00 0.00 0.00 1.75
2210 4246 4.503910 CTCTCACCATCACCAACGAATAA 58.496 43.478 0.00 0.00 0.00 1.40
2216 4252 4.006989 CCATCACCAACGAATAAACCAGA 58.993 43.478 0.00 0.00 0.00 3.86
2229 4265 6.457528 CGAATAAACCAGAAGAAGATGAAGCC 60.458 42.308 0.00 0.00 0.00 4.35
2243 4279 0.463833 GAAGCCGATTACTGTGGGGG 60.464 60.000 0.00 0.00 0.00 5.40
2252 4288 3.775261 TTACTGTGGGGGTTTACACTC 57.225 47.619 0.00 0.00 38.39 3.51
2253 4289 1.513858 ACTGTGGGGGTTTACACTCA 58.486 50.000 0.00 0.00 38.39 3.41
2255 4291 1.420138 CTGTGGGGGTTTACACTCAGT 59.580 52.381 0.00 0.00 38.39 3.41
2257 4293 2.369532 TGTGGGGGTTTACACTCAGTAC 59.630 50.000 0.00 0.00 38.39 2.73
2265 4312 5.127356 GGGTTTACACTCAGTACTATGCTCT 59.873 44.000 0.00 0.00 30.91 4.09
2322 4371 5.701290 AGAAAATGAAAACTCGACCTACAGG 59.299 40.000 0.00 0.00 42.17 4.00
2360 4421 7.491696 ACGTACTCATCAAAGTAAATTAGGAGC 59.508 37.037 0.00 0.00 33.68 4.70
2372 4433 9.620259 AAGTAAATTAGGAGCCTCATTAAGAAG 57.380 33.333 0.00 0.00 0.00 2.85
2375 4436 2.200081 AGGAGCCTCATTAAGAAGCCA 58.800 47.619 0.00 0.00 34.06 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.533625 CAAGGTGCCTTTCCGAATCA 58.466 50.000 0.00 0.00 33.42 2.57
4 5 0.467290 AAAGCAAGGTGCCTTTCCGA 60.467 50.000 0.00 0.00 46.52 4.55
5 6 0.318955 CAAAGCAAGGTGCCTTTCCG 60.319 55.000 0.00 0.00 46.52 4.30
6 7 0.601046 GCAAAGCAAGGTGCCTTTCC 60.601 55.000 0.00 0.00 46.52 3.13
7 8 0.390492 AGCAAAGCAAGGTGCCTTTC 59.610 50.000 0.00 0.00 46.52 2.62
8 9 0.832626 AAGCAAAGCAAGGTGCCTTT 59.167 45.000 0.00 0.00 46.52 3.11
9 10 0.105408 CAAGCAAAGCAAGGTGCCTT 59.895 50.000 0.00 0.00 46.52 4.35
10 11 1.744014 CAAGCAAAGCAAGGTGCCT 59.256 52.632 0.00 0.00 46.52 4.75
11 12 1.957695 GCAAGCAAAGCAAGGTGCC 60.958 57.895 0.00 0.00 46.52 5.01
12 13 0.531311 AAGCAAGCAAAGCAAGGTGC 60.531 50.000 0.00 0.00 45.46 5.01
13 14 1.202440 TGAAGCAAGCAAAGCAAGGTG 60.202 47.619 0.00 0.00 0.00 4.00
14 15 1.113788 TGAAGCAAGCAAAGCAAGGT 58.886 45.000 0.00 0.00 0.00 3.50
15 16 1.862827 GTTGAAGCAAGCAAAGCAAGG 59.137 47.619 0.00 0.00 0.00 3.61
16 17 2.542597 TGTTGAAGCAAGCAAAGCAAG 58.457 42.857 0.00 0.00 0.00 4.01
17 18 2.669300 TGTTGAAGCAAGCAAAGCAA 57.331 40.000 0.00 0.00 0.00 3.91
18 19 2.542597 CTTGTTGAAGCAAGCAAAGCA 58.457 42.857 0.00 0.00 39.26 3.91
19 20 1.862827 CCTTGTTGAAGCAAGCAAAGC 59.137 47.619 1.69 0.00 43.17 3.51
20 21 3.118542 GTCCTTGTTGAAGCAAGCAAAG 58.881 45.455 1.69 0.00 43.17 2.77
21 22 2.479389 CGTCCTTGTTGAAGCAAGCAAA 60.479 45.455 1.69 0.00 43.17 3.68
22 23 1.065401 CGTCCTTGTTGAAGCAAGCAA 59.935 47.619 1.69 0.00 43.17 3.91
23 24 0.662619 CGTCCTTGTTGAAGCAAGCA 59.337 50.000 1.69 0.00 43.17 3.91
24 25 0.944386 TCGTCCTTGTTGAAGCAAGC 59.056 50.000 1.69 0.00 43.17 4.01
25 26 2.160417 GGATCGTCCTTGTTGAAGCAAG 59.840 50.000 0.32 0.32 43.88 4.01
26 27 2.151202 GGATCGTCCTTGTTGAAGCAA 58.849 47.619 0.00 0.00 32.53 3.91
27 28 1.071542 TGGATCGTCCTTGTTGAAGCA 59.928 47.619 5.77 0.00 37.46 3.91
28 29 1.734465 CTGGATCGTCCTTGTTGAAGC 59.266 52.381 5.77 0.00 37.46 3.86
29 30 1.734465 GCTGGATCGTCCTTGTTGAAG 59.266 52.381 5.77 0.00 37.46 3.02
30 31 1.071542 TGCTGGATCGTCCTTGTTGAA 59.928 47.619 5.77 0.00 37.46 2.69
31 32 0.684535 TGCTGGATCGTCCTTGTTGA 59.315 50.000 5.77 0.00 37.46 3.18
32 33 1.081892 CTGCTGGATCGTCCTTGTTG 58.918 55.000 5.77 0.00 37.46 3.33
33 34 0.687354 ACTGCTGGATCGTCCTTGTT 59.313 50.000 5.77 0.00 37.46 2.83
34 35 0.036952 CACTGCTGGATCGTCCTTGT 60.037 55.000 5.77 0.00 37.46 3.16
35 36 0.247460 TCACTGCTGGATCGTCCTTG 59.753 55.000 5.77 1.26 37.46 3.61
36 37 0.976641 TTCACTGCTGGATCGTCCTT 59.023 50.000 5.77 0.00 37.46 3.36
37 38 0.534412 CTTCACTGCTGGATCGTCCT 59.466 55.000 5.77 0.00 37.46 3.85
38 39 1.086634 GCTTCACTGCTGGATCGTCC 61.087 60.000 0.00 0.00 36.96 4.79
39 40 0.390340 TGCTTCACTGCTGGATCGTC 60.390 55.000 0.00 0.00 0.00 4.20
40 41 0.035317 TTGCTTCACTGCTGGATCGT 59.965 50.000 0.00 0.00 0.00 3.73
41 42 0.445436 GTTGCTTCACTGCTGGATCG 59.555 55.000 0.00 0.00 0.00 3.69
42 43 1.467734 CTGTTGCTTCACTGCTGGATC 59.532 52.381 0.00 0.00 0.00 3.36
43 44 1.531423 CTGTTGCTTCACTGCTGGAT 58.469 50.000 0.00 0.00 0.00 3.41
46 47 1.285023 GCCTGTTGCTTCACTGCTG 59.715 57.895 0.00 0.00 36.87 4.41
76 77 1.949525 GTCTGGTCAGTTGCAACACAT 59.050 47.619 30.11 8.22 0.00 3.21
80 81 1.869767 CTCTGTCTGGTCAGTTGCAAC 59.130 52.381 22.17 22.17 36.85 4.17
81 82 1.811558 GCTCTGTCTGGTCAGTTGCAA 60.812 52.381 0.00 0.00 36.70 4.08
84 90 2.344950 GATGCTCTGTCTGGTCAGTTG 58.655 52.381 0.00 0.00 36.85 3.16
102 108 2.242926 ACATCTCGATCATCCGTGGAT 58.757 47.619 0.00 0.00 34.81 3.41
103 109 1.692411 ACATCTCGATCATCCGTGGA 58.308 50.000 0.00 0.00 0.00 4.02
104 110 2.515926 AACATCTCGATCATCCGTGG 57.484 50.000 0.00 0.00 0.00 4.94
106 112 3.883489 TCAGTAACATCTCGATCATCCGT 59.117 43.478 0.00 0.00 0.00 4.69
107 113 4.471373 CTCAGTAACATCTCGATCATCCG 58.529 47.826 0.00 0.00 0.00 4.18
108 114 4.233789 GCTCAGTAACATCTCGATCATCC 58.766 47.826 0.00 0.00 0.00 3.51
137 184 6.346896 ACGACTATGTATCTGTCTGTCAGTA 58.653 40.000 0.00 0.00 43.97 2.74
153 200 8.422973 AGTACTCTAAGTAACTGACGACTATG 57.577 38.462 0.00 0.00 31.62 2.23
155 202 7.875041 ACAAGTACTCTAAGTAACTGACGACTA 59.125 37.037 0.00 0.00 31.62 2.59
157 204 6.896969 ACAAGTACTCTAAGTAACTGACGAC 58.103 40.000 0.00 0.00 31.62 4.34
159 206 6.895898 TGACAAGTACTCTAAGTAACTGACG 58.104 40.000 0.00 0.00 31.62 4.35
163 210 8.088981 CACCAATGACAAGTACTCTAAGTAACT 58.911 37.037 0.00 0.00 31.62 2.24
170 217 5.538813 AGTGACACCAATGACAAGTACTCTA 59.461 40.000 0.84 0.00 32.21 2.43
171 218 4.345257 AGTGACACCAATGACAAGTACTCT 59.655 41.667 0.84 0.00 32.21 3.24
172 219 4.632153 AGTGACACCAATGACAAGTACTC 58.368 43.478 0.84 0.00 32.21 2.59
173 220 4.345257 AGAGTGACACCAATGACAAGTACT 59.655 41.667 0.84 0.00 32.21 2.73
174 221 4.632153 AGAGTGACACCAATGACAAGTAC 58.368 43.478 0.84 0.00 32.21 2.73
178 225 3.466836 GTGAGAGTGACACCAATGACAA 58.533 45.455 0.84 0.00 32.21 3.18
196 243 6.327104 TGACAGGTAAGTAAGTAAAAGGGTGA 59.673 38.462 0.00 0.00 0.00 4.02
197 244 6.527423 TGACAGGTAAGTAAGTAAAAGGGTG 58.473 40.000 0.00 0.00 0.00 4.61
199 246 7.172703 CACTTGACAGGTAAGTAAGTAAAAGGG 59.827 40.741 0.00 0.00 36.29 3.95
200 247 7.929785 TCACTTGACAGGTAAGTAAGTAAAAGG 59.070 37.037 0.00 0.00 36.29 3.11
201 248 8.882415 TCACTTGACAGGTAAGTAAGTAAAAG 57.118 34.615 0.00 0.00 36.29 2.27
202 249 9.485206 GATCACTTGACAGGTAAGTAAGTAAAA 57.515 33.333 0.00 0.00 36.29 1.52
203 250 8.092687 GGATCACTTGACAGGTAAGTAAGTAAA 58.907 37.037 0.00 0.00 36.29 2.01
241 288 5.460091 CAGTCCGTTGATGTCAGTATACATG 59.540 44.000 5.50 0.00 40.17 3.21
251 298 1.986378 CGTCTTCAGTCCGTTGATGTC 59.014 52.381 0.00 0.00 0.00 3.06
275 322 0.319211 TTGTCGTAGTCCCTTGCGTG 60.319 55.000 0.00 0.00 0.00 5.34
276 323 0.038526 CTTGTCGTAGTCCCTTGCGT 60.039 55.000 0.00 0.00 0.00 5.24
277 324 1.352156 GCTTGTCGTAGTCCCTTGCG 61.352 60.000 0.00 0.00 0.00 4.85
278 325 0.037232 AGCTTGTCGTAGTCCCTTGC 60.037 55.000 0.00 0.00 0.00 4.01
279 326 3.802948 ATAGCTTGTCGTAGTCCCTTG 57.197 47.619 0.00 0.00 0.00 3.61
280 327 6.281405 CAAATATAGCTTGTCGTAGTCCCTT 58.719 40.000 0.00 0.00 0.00 3.95
284 331 5.332656 GCAGCAAATATAGCTTGTCGTAGTC 60.333 44.000 0.00 0.00 41.14 2.59
285 332 4.508124 GCAGCAAATATAGCTTGTCGTAGT 59.492 41.667 0.00 0.00 41.14 2.73
294 341 3.199880 ACGGAAGCAGCAAATATAGCT 57.800 42.857 0.00 0.00 44.62 3.32
298 345 4.437390 CGAGAAAACGGAAGCAGCAAATAT 60.437 41.667 0.00 0.00 0.00 1.28
299 346 3.120338 CGAGAAAACGGAAGCAGCAAATA 60.120 43.478 0.00 0.00 0.00 1.40
302 349 0.586319 CGAGAAAACGGAAGCAGCAA 59.414 50.000 0.00 0.00 0.00 3.91
311 358 5.561040 TCAGTTGATGAACCGAGAAAACGG 61.561 45.833 0.00 0.00 45.10 4.44
321 368 8.623903 TGCATTATTATCTTCAGTTGATGAACC 58.376 33.333 2.37 0.00 43.09 3.62
322 369 9.661187 CTGCATTATTATCTTCAGTTGATGAAC 57.339 33.333 2.37 0.00 43.09 3.18
333 380 6.907212 CCAAACGTCACTGCATTATTATCTTC 59.093 38.462 0.00 0.00 0.00 2.87
340 387 4.630069 GTCTACCAAACGTCACTGCATTAT 59.370 41.667 0.00 0.00 0.00 1.28
341 388 3.991773 GTCTACCAAACGTCACTGCATTA 59.008 43.478 0.00 0.00 0.00 1.90
343 390 2.413837 GTCTACCAAACGTCACTGCAT 58.586 47.619 0.00 0.00 0.00 3.96
344 391 1.860676 GTCTACCAAACGTCACTGCA 58.139 50.000 0.00 0.00 0.00 4.41
345 392 0.782384 CGTCTACCAAACGTCACTGC 59.218 55.000 0.00 0.00 35.47 4.40
346 393 1.269413 ACCGTCTACCAAACGTCACTG 60.269 52.381 0.00 0.00 38.44 3.66
347 394 1.035139 ACCGTCTACCAAACGTCACT 58.965 50.000 0.00 0.00 38.44 3.41
348 395 2.030805 ACTACCGTCTACCAAACGTCAC 60.031 50.000 0.00 0.00 38.44 3.67
364 417 8.454894 GTGAGTTAGTTAACTACAGGTACTACC 58.545 40.741 14.96 5.73 45.84 3.18
367 420 6.712547 ACGTGAGTTAGTTAACTACAGGTACT 59.287 38.462 20.00 17.31 45.84 2.73
422 490 1.084370 GGAGTCAACGGATGAAGCGG 61.084 60.000 0.00 0.00 40.50 5.52
423 491 1.084370 GGGAGTCAACGGATGAAGCG 61.084 60.000 0.00 0.00 40.50 4.68
439 507 2.031465 GAAAAGTGGCGACGGGGA 59.969 61.111 0.00 0.00 0.00 4.81
440 508 3.053896 GGAAAAGTGGCGACGGGG 61.054 66.667 0.00 0.00 0.00 5.73
441 509 2.032071 AGGAAAAGTGGCGACGGG 59.968 61.111 0.00 0.00 0.00 5.28
447 528 2.810852 CAGAAGAGACAGGAAAAGTGGC 59.189 50.000 0.00 0.00 0.00 5.01
448 529 2.810852 GCAGAAGAGACAGGAAAAGTGG 59.189 50.000 0.00 0.00 0.00 4.00
450 531 3.845781 TGCAGAAGAGACAGGAAAAGT 57.154 42.857 0.00 0.00 0.00 2.66
451 532 4.758674 TGATTGCAGAAGAGACAGGAAAAG 59.241 41.667 0.00 0.00 0.00 2.27
455 536 2.354503 GCTGATTGCAGAAGAGACAGGA 60.355 50.000 0.00 0.00 45.17 3.86
458 539 1.718396 CGCTGATTGCAGAAGAGACA 58.282 50.000 0.00 0.00 45.17 3.41
459 540 0.373024 GCGCTGATTGCAGAAGAGAC 59.627 55.000 0.00 0.00 45.17 3.36
463 544 2.796651 GGGCGCTGATTGCAGAAG 59.203 61.111 7.64 0.00 45.17 2.85
468 549 1.444119 TAAATCCGGGCGCTGATTGC 61.444 55.000 18.71 0.00 31.79 3.56
473 554 1.403679 TGAAAATAAATCCGGGCGCTG 59.596 47.619 7.64 0.00 0.00 5.18
476 557 3.495670 TGTTGAAAATAAATCCGGGCG 57.504 42.857 0.00 0.00 0.00 6.13
484 565 9.844257 AATGGTCAAGGATTTGTTGAAAATAAA 57.156 25.926 0.00 0.00 41.15 1.40
485 566 9.844257 AAATGGTCAAGGATTTGTTGAAAATAA 57.156 25.926 0.00 0.00 35.71 1.40
486 567 9.270640 CAAATGGTCAAGGATTTGTTGAAAATA 57.729 29.630 0.00 0.00 35.71 1.40
487 568 7.992033 TCAAATGGTCAAGGATTTGTTGAAAAT 59.008 29.630 0.00 0.00 39.54 1.82
488 569 7.334090 TCAAATGGTCAAGGATTTGTTGAAAA 58.666 30.769 0.00 0.00 39.54 2.29
489 570 6.882656 TCAAATGGTCAAGGATTTGTTGAAA 58.117 32.000 0.00 0.00 39.54 2.69
490 571 6.477053 TCAAATGGTCAAGGATTTGTTGAA 57.523 33.333 0.00 0.00 39.54 2.69
491 572 5.509501 GCTCAAATGGTCAAGGATTTGTTGA 60.510 40.000 0.00 0.00 39.54 3.18
493 574 4.262592 GGCTCAAATGGTCAAGGATTTGTT 60.263 41.667 0.00 0.00 39.54 2.83
494 575 3.259123 GGCTCAAATGGTCAAGGATTTGT 59.741 43.478 0.00 0.00 39.54 2.83
497 578 2.043526 AGGGCTCAAATGGTCAAGGATT 59.956 45.455 0.00 0.00 0.00 3.01
498 579 1.642762 AGGGCTCAAATGGTCAAGGAT 59.357 47.619 0.00 0.00 0.00 3.24
499 580 1.075601 AGGGCTCAAATGGTCAAGGA 58.924 50.000 0.00 0.00 0.00 3.36
500 581 2.806945 TAGGGCTCAAATGGTCAAGG 57.193 50.000 0.00 0.00 0.00 3.61
501 582 4.766891 TCTTTTAGGGCTCAAATGGTCAAG 59.233 41.667 0.00 0.00 0.00 3.02
502 583 4.735369 TCTTTTAGGGCTCAAATGGTCAA 58.265 39.130 0.00 0.00 0.00 3.18
503 584 4.380843 TCTTTTAGGGCTCAAATGGTCA 57.619 40.909 0.00 0.00 0.00 4.02
504 585 4.440663 GCATCTTTTAGGGCTCAAATGGTC 60.441 45.833 0.00 0.00 0.00 4.02
505 586 3.448660 GCATCTTTTAGGGCTCAAATGGT 59.551 43.478 0.00 0.00 0.00 3.55
506 587 3.703052 AGCATCTTTTAGGGCTCAAATGG 59.297 43.478 0.00 0.00 28.71 3.16
507 588 4.159135 ACAGCATCTTTTAGGGCTCAAATG 59.841 41.667 0.00 0.00 33.60 2.32
508 589 4.159135 CACAGCATCTTTTAGGGCTCAAAT 59.841 41.667 0.00 0.00 33.60 2.32
509 590 3.507233 CACAGCATCTTTTAGGGCTCAAA 59.493 43.478 0.00 0.00 33.60 2.69
510 591 3.084039 CACAGCATCTTTTAGGGCTCAA 58.916 45.455 0.00 0.00 33.60 3.02
511 592 2.715046 CACAGCATCTTTTAGGGCTCA 58.285 47.619 0.00 0.00 33.60 4.26
512 593 1.403323 GCACAGCATCTTTTAGGGCTC 59.597 52.381 0.00 0.00 33.60 4.70
513 594 1.005215 AGCACAGCATCTTTTAGGGCT 59.995 47.619 0.00 0.00 36.99 5.19
514 595 1.133790 CAGCACAGCATCTTTTAGGGC 59.866 52.381 0.00 0.00 0.00 5.19
515 596 2.163010 CACAGCACAGCATCTTTTAGGG 59.837 50.000 0.00 0.00 0.00 3.53
516 597 2.163010 CCACAGCACAGCATCTTTTAGG 59.837 50.000 0.00 0.00 0.00 2.69
517 598 2.415090 GCCACAGCACAGCATCTTTTAG 60.415 50.000 0.00 0.00 39.53 1.85
518 599 1.541147 GCCACAGCACAGCATCTTTTA 59.459 47.619 0.00 0.00 39.53 1.52
519 600 0.316204 GCCACAGCACAGCATCTTTT 59.684 50.000 0.00 0.00 39.53 2.27
520 601 0.824595 TGCCACAGCACAGCATCTTT 60.825 50.000 0.00 0.00 46.52 2.52
521 602 1.228337 TGCCACAGCACAGCATCTT 60.228 52.632 0.00 0.00 46.52 2.40
522 603 2.433004 TGCCACAGCACAGCATCT 59.567 55.556 0.00 0.00 46.52 2.90
531 612 1.269723 GGAAGGTAAGTTTGCCACAGC 59.730 52.381 1.86 0.00 35.15 4.40
532 613 1.535462 CGGAAGGTAAGTTTGCCACAG 59.465 52.381 1.86 0.00 35.15 3.66
533 614 1.134037 ACGGAAGGTAAGTTTGCCACA 60.134 47.619 1.86 0.00 35.15 4.17
534 615 1.601166 ACGGAAGGTAAGTTTGCCAC 58.399 50.000 1.86 0.00 35.15 5.01
535 616 2.351706 AACGGAAGGTAAGTTTGCCA 57.648 45.000 1.86 0.00 35.15 4.92
536 617 2.350102 CGAAACGGAAGGTAAGTTTGCC 60.350 50.000 0.00 0.00 38.09 4.52
537 618 2.545106 TCGAAACGGAAGGTAAGTTTGC 59.455 45.455 0.00 0.00 38.09 3.68
538 619 4.378046 CCATCGAAACGGAAGGTAAGTTTG 60.378 45.833 0.00 0.00 38.09 2.93
539 620 3.749609 CCATCGAAACGGAAGGTAAGTTT 59.250 43.478 0.00 0.00 40.32 2.66
540 621 3.007182 TCCATCGAAACGGAAGGTAAGTT 59.993 43.478 0.00 0.00 0.00 2.66
541 622 2.564062 TCCATCGAAACGGAAGGTAAGT 59.436 45.455 0.00 0.00 0.00 2.24
545 626 1.406887 CCATCCATCGAAACGGAAGGT 60.407 52.381 12.58 0.00 35.78 3.50
557 638 1.002888 AGCGACATCCATCCATCCATC 59.997 52.381 0.00 0.00 0.00 3.51
558 639 1.002888 GAGCGACATCCATCCATCCAT 59.997 52.381 0.00 0.00 0.00 3.41
559 640 0.394192 GAGCGACATCCATCCATCCA 59.606 55.000 0.00 0.00 0.00 3.41
560 641 0.683973 AGAGCGACATCCATCCATCC 59.316 55.000 0.00 0.00 0.00 3.51
561 642 2.141517 CAAGAGCGACATCCATCCATC 58.858 52.381 0.00 0.00 0.00 3.51
575 656 4.025647 GTGACAAGTGACAAGTACAAGAGC 60.026 45.833 0.00 0.00 0.00 4.09
578 659 4.034048 GTGGTGACAAGTGACAAGTACAAG 59.966 45.833 0.00 0.00 46.06 3.16
581 662 3.793559 AGTGGTGACAAGTGACAAGTAC 58.206 45.455 0.00 0.00 46.06 2.73
610 691 0.250770 AAAGACGAGACCTTTGGGGC 60.251 55.000 0.00 0.00 42.21 5.80
611 692 1.071699 TGAAAGACGAGACCTTTGGGG 59.928 52.381 0.00 0.00 41.89 4.96
691 812 2.232298 CTCGGGTGAGGTTGAGAGGC 62.232 65.000 0.00 0.00 38.65 4.70
693 814 1.216710 GCTCGGGTGAGGTTGAGAG 59.783 63.158 0.00 0.00 42.79 3.20
724 2544 1.075836 CGGGTTTGGGGTGATTGGA 59.924 57.895 0.00 0.00 0.00 3.53
726 2546 1.459450 CTACGGGTTTGGGGTGATTG 58.541 55.000 0.00 0.00 0.00 2.67
727 2547 0.323087 GCTACGGGTTTGGGGTGATT 60.323 55.000 0.00 0.00 0.00 2.57
744 2564 3.781307 TGACGCCCGCCATTAGCT 61.781 61.111 0.00 0.00 40.39 3.32
947 2789 3.799755 CTTCCTTTTCGGCGGGCG 61.800 66.667 18.68 18.68 0.00 6.13
948 2790 1.313091 AATCTTCCTTTTCGGCGGGC 61.313 55.000 7.21 0.00 0.00 6.13
949 2791 0.733150 GAATCTTCCTTTTCGGCGGG 59.267 55.000 7.21 0.00 0.00 6.13
960 2802 2.556257 GCTTCTTCCTCGGAATCTTCC 58.444 52.381 0.00 0.00 44.05 3.46
1215 3063 4.974438 TGCTCCCACGGGAAGGGT 62.974 66.667 6.23 0.00 46.82 4.34
1389 3237 4.579869 GAGCCATAGAGACTAGAGAGAGG 58.420 52.174 0.00 0.00 0.00 3.69
1392 3240 2.742053 GCGAGCCATAGAGACTAGAGAG 59.258 54.545 0.00 0.00 0.00 3.20
1393 3241 2.551287 GGCGAGCCATAGAGACTAGAGA 60.551 54.545 9.58 0.00 35.81 3.10
1397 3245 0.185175 TGGGCGAGCCATAGAGACTA 59.815 55.000 16.65 0.00 37.98 2.59
1398 3246 1.075970 TGGGCGAGCCATAGAGACT 60.076 57.895 16.65 0.00 37.98 3.24
1399 3247 1.068250 GTGGGCGAGCCATAGAGAC 59.932 63.158 16.65 0.00 37.98 3.36
1400 3248 2.134287 GGTGGGCGAGCCATAGAGA 61.134 63.158 16.65 0.00 37.98 3.10
1401 3249 2.423446 GGTGGGCGAGCCATAGAG 59.577 66.667 16.65 0.00 37.98 2.43
1417 3265 1.202855 CCATCAATCTACAGGGCTGGG 60.203 57.143 0.00 0.00 34.19 4.45
1443 3291 1.406898 TCCTGATGAACTCGCAGCTAG 59.593 52.381 0.00 0.00 0.00 3.42
1447 3296 0.809241 GCCTCCTGATGAACTCGCAG 60.809 60.000 0.00 0.00 0.00 5.18
1454 3303 1.219124 GACAGCGCCTCCTGATGAA 59.781 57.895 2.29 0.00 36.67 2.57
1463 3312 3.576118 ACATATAGATTCAGACAGCGCCT 59.424 43.478 2.29 0.00 0.00 5.52
1464 3313 3.919216 ACATATAGATTCAGACAGCGCC 58.081 45.455 2.29 0.00 0.00 6.53
1520 3389 9.270640 CCTTCTCAGATTGTTCCTTCATATTAG 57.729 37.037 0.00 0.00 0.00 1.73
1530 3401 4.593956 ACCAATCCTTCTCAGATTGTTCC 58.406 43.478 11.38 0.00 45.99 3.62
1557 3432 1.637553 ACAGGATGCAGAAAGGTGGAT 59.362 47.619 0.00 0.00 42.53 3.41
1603 3480 4.322057 AAAAGTTATGGCCTCCATGAGT 57.678 40.909 3.32 0.74 44.84 3.41
1604 3481 5.888161 AGTTAAAAGTTATGGCCTCCATGAG 59.112 40.000 3.32 0.00 44.84 2.90
1623 3500 7.219917 CAGAATTCAGTTGCAACGAAAAGTTAA 59.780 33.333 27.82 15.15 42.02 2.01
1627 3504 4.442073 CCAGAATTCAGTTGCAACGAAAAG 59.558 41.667 27.82 20.19 0.00 2.27
1673 3559 6.212388 CCCAAATGGCAGTACTCTATCTCTAT 59.788 42.308 0.00 0.00 0.00 1.98
1674 3560 5.540337 CCCAAATGGCAGTACTCTATCTCTA 59.460 44.000 0.00 0.00 0.00 2.43
1675 3561 4.346418 CCCAAATGGCAGTACTCTATCTCT 59.654 45.833 0.00 0.00 0.00 3.10
1676 3562 4.101741 ACCCAAATGGCAGTACTCTATCTC 59.898 45.833 0.00 0.00 37.83 2.75
1677 3563 4.040755 ACCCAAATGGCAGTACTCTATCT 58.959 43.478 0.00 0.00 37.83 1.98
1689 3575 2.722094 TCATACACAGACCCAAATGGC 58.278 47.619 0.00 0.00 37.83 4.40
1736 3630 1.108776 GCATGTTCCAGACCATGCAT 58.891 50.000 21.09 0.00 46.71 3.96
1737 3631 2.570365 GCATGTTCCAGACCATGCA 58.430 52.632 21.09 0.00 46.71 3.96
1787 3681 1.027357 AACAGTGCTGCCAAGACTTG 58.973 50.000 8.31 8.31 0.00 3.16
1790 3684 0.819259 TCCAACAGTGCTGCCAAGAC 60.819 55.000 0.00 0.00 0.00 3.01
1819 3716 7.696992 TGTGTGACAGTAGTACAAGATGATA 57.303 36.000 2.52 0.00 0.00 2.15
1823 3720 5.724328 CCATGTGTGACAGTAGTACAAGAT 58.276 41.667 2.52 0.00 0.00 2.40
1825 3722 3.679980 GCCATGTGTGACAGTAGTACAAG 59.320 47.826 2.52 0.00 0.00 3.16
1827 3724 2.630580 TGCCATGTGTGACAGTAGTACA 59.369 45.455 2.52 0.00 0.00 2.90
1830 3727 2.928801 TTGCCATGTGTGACAGTAGT 57.071 45.000 0.00 0.00 0.00 2.73
1831 3728 3.125829 GTCATTGCCATGTGTGACAGTAG 59.874 47.826 10.34 0.00 40.41 2.57
1832 3729 3.073678 GTCATTGCCATGTGTGACAGTA 58.926 45.455 10.34 0.00 40.41 2.74
1840 3737 2.036217 ACTGTTTGGTCATTGCCATGTG 59.964 45.455 0.00 0.00 38.48 3.21
1852 3749 2.945668 GTGCTCTGAAAGACTGTTTGGT 59.054 45.455 0.00 0.00 38.67 3.67
1909 3806 6.866010 TCAGTTATGAATGAATGAATCGGG 57.134 37.500 0.00 0.00 30.61 5.14
1910 3807 9.229784 CTTTTCAGTTATGAATGAATGAATCGG 57.770 33.333 0.96 0.00 44.75 4.18
1911 3808 9.778993 ACTTTTCAGTTATGAATGAATGAATCG 57.221 29.630 0.96 0.00 44.75 3.34
1922 3938 7.829211 CCCTCCAGATTACTTTTCAGTTATGAA 59.171 37.037 0.00 0.00 43.72 2.57
1923 3939 7.037586 ACCCTCCAGATTACTTTTCAGTTATGA 60.038 37.037 0.00 0.00 34.06 2.15
1924 3940 7.112779 ACCCTCCAGATTACTTTTCAGTTATG 58.887 38.462 0.00 0.00 34.06 1.90
1936 3952 7.229907 TGTTTTTGTTAAGACCCTCCAGATTAC 59.770 37.037 0.00 0.00 0.00 1.89
1938 3954 6.133356 TGTTTTTGTTAAGACCCTCCAGATT 58.867 36.000 0.00 0.00 0.00 2.40
1943 3959 6.636705 ACTTTTGTTTTTGTTAAGACCCTCC 58.363 36.000 0.00 0.00 0.00 4.30
1945 3961 8.809066 AGTTACTTTTGTTTTTGTTAAGACCCT 58.191 29.630 0.00 0.00 0.00 4.34
1946 3962 8.865978 CAGTTACTTTTGTTTTTGTTAAGACCC 58.134 33.333 0.00 0.00 0.00 4.46
1947 3963 9.628746 TCAGTTACTTTTGTTTTTGTTAAGACC 57.371 29.630 0.00 0.00 0.00 3.85
1978 3994 6.086222 CGTGGGTTCAGTATTGATTTTCTTG 58.914 40.000 0.00 0.00 32.27 3.02
1999 4015 0.246635 AGGTGCTGCTAGTAACCGTG 59.753 55.000 0.00 0.00 37.78 4.94
2011 4027 1.931841 CGATCTGATTCACAGGTGCTG 59.068 52.381 0.00 0.00 45.76 4.41
2014 4030 1.662629 GTGCGATCTGATTCACAGGTG 59.337 52.381 14.85 0.00 45.76 4.00
2061 4081 6.432936 TCGAGCTGCATTAATTCATTCATTC 58.567 36.000 1.02 0.00 0.00 2.67
2062 4082 6.381481 TCGAGCTGCATTAATTCATTCATT 57.619 33.333 1.02 0.00 0.00 2.57
2083 4103 3.607775 CGGCAATGCTCCTATTCATTTCG 60.608 47.826 4.82 0.00 31.15 3.46
2105 4125 3.451141 TTTGCTTTGATGGTGGTGTTC 57.549 42.857 0.00 0.00 0.00 3.18
2108 4128 5.138125 ACTAATTTGCTTTGATGGTGGTG 57.862 39.130 0.00 0.00 0.00 4.17
2130 4152 2.632512 GGTTTCTTTCTTGATGGGGCAA 59.367 45.455 0.00 0.00 0.00 4.52
2165 4187 0.776810 TGGATTGGTTGAGGCCTTGA 59.223 50.000 6.77 0.00 0.00 3.02
2181 4217 1.839994 GGTGATGGTGAGAGGATTGGA 59.160 52.381 0.00 0.00 0.00 3.53
2182 4218 1.561076 TGGTGATGGTGAGAGGATTGG 59.439 52.381 0.00 0.00 0.00 3.16
2183 4219 3.012518 GTTGGTGATGGTGAGAGGATTG 58.987 50.000 0.00 0.00 0.00 2.67
2184 4220 2.355108 CGTTGGTGATGGTGAGAGGATT 60.355 50.000 0.00 0.00 0.00 3.01
2185 4221 1.208052 CGTTGGTGATGGTGAGAGGAT 59.792 52.381 0.00 0.00 0.00 3.24
2186 4222 0.608130 CGTTGGTGATGGTGAGAGGA 59.392 55.000 0.00 0.00 0.00 3.71
2187 4223 0.608130 TCGTTGGTGATGGTGAGAGG 59.392 55.000 0.00 0.00 0.00 3.69
2204 4240 6.457528 GGCTTCATCTTCTTCTGGTTTATTCG 60.458 42.308 0.00 0.00 0.00 3.34
2209 4245 3.077359 CGGCTTCATCTTCTTCTGGTTT 58.923 45.455 0.00 0.00 0.00 3.27
2210 4246 2.303022 TCGGCTTCATCTTCTTCTGGTT 59.697 45.455 0.00 0.00 0.00 3.67
2216 4252 4.872691 CACAGTAATCGGCTTCATCTTCTT 59.127 41.667 0.00 0.00 0.00 2.52
2229 4265 3.004862 GTGTAAACCCCCACAGTAATCG 58.995 50.000 0.00 0.00 0.00 3.34
2243 4279 7.486551 CAGAAGAGCATAGTACTGAGTGTAAAC 59.513 40.741 5.39 0.00 32.25 2.01
2252 4288 5.826601 TCTGACAGAAGAGCATAGTACTG 57.173 43.478 5.39 0.00 0.00 2.74
2253 4289 6.842437 TTTCTGACAGAAGAGCATAGTACT 57.158 37.500 17.06 0.00 35.37 2.73
2279 4326 7.920160 TTTTCTTCTTTCAATTGCTTTGGTT 57.080 28.000 0.00 0.00 35.92 3.67
2280 4327 7.769970 TCATTTTCTTCTTTCAATTGCTTTGGT 59.230 29.630 0.00 0.00 35.92 3.67
2281 4328 8.145316 TCATTTTCTTCTTTCAATTGCTTTGG 57.855 30.769 0.00 0.00 35.92 3.28
2282 4329 9.991388 TTTCATTTTCTTCTTTCAATTGCTTTG 57.009 25.926 0.00 0.00 36.61 2.77
2285 4332 9.387257 AGTTTTCATTTTCTTCTTTCAATTGCT 57.613 25.926 0.00 0.00 0.00 3.91
2286 4333 9.642312 GAGTTTTCATTTTCTTCTTTCAATTGC 57.358 29.630 0.00 0.00 0.00 3.56
2287 4334 9.839589 CGAGTTTTCATTTTCTTCTTTCAATTG 57.160 29.630 0.00 0.00 0.00 2.32
2296 4345 7.186021 TGTAGGTCGAGTTTTCATTTTCTTC 57.814 36.000 0.00 0.00 0.00 2.87
2299 4348 5.928153 CCTGTAGGTCGAGTTTTCATTTTC 58.072 41.667 0.00 0.00 0.00 2.29
2322 4371 6.174451 TGATGAGTACGTACTGTTCAGTAC 57.826 41.667 31.91 24.61 40.73 2.73
2327 4376 8.511465 TTTACTTTGATGAGTACGTACTGTTC 57.489 34.615 31.91 24.87 36.50 3.18
2328 4377 9.485206 AATTTACTTTGATGAGTACGTACTGTT 57.515 29.630 31.91 18.45 36.50 3.16
2360 4421 2.425143 TGGCTGGCTTCTTAATGAGG 57.575 50.000 2.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.