Multiple sequence alignment - TraesCS3B01G011300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G011300 chr3B 100.000 3852 0 0 1 3852 5168041 5171892 0.000000e+00 7114
1 TraesCS3B01G011300 chr3B 98.076 3014 27 14 856 3852 3667462 3664463 0.000000e+00 5216
2 TraesCS3B01G011300 chr3B 89.003 1164 73 16 1024 2146 3407257 3408406 0.000000e+00 1389
3 TraesCS3B01G011300 chr3B 90.249 523 29 14 946 1450 5323689 5323171 0.000000e+00 664
4 TraesCS3B01G011300 chr3B 96.684 392 11 2 1 390 809182657 809182266 0.000000e+00 651
5 TraesCS3B01G011300 chr3B 90.566 212 19 1 1935 2146 5322654 5322444 2.930000e-71 279
6 TraesCS3B01G011300 chr3B 83.404 235 23 14 2444 2669 3408609 3408836 1.810000e-48 204
7 TraesCS3B01G011300 chr3B 89.404 151 12 3 2523 2673 5322165 5322019 1.830000e-43 187
8 TraesCS3B01G011300 chr3B 84.091 132 15 5 2543 2673 3625833 3625959 5.230000e-24 122
9 TraesCS3B01G011300 chr3A 86.518 1973 120 58 1935 3852 7475902 7474021 0.000000e+00 2036
10 TraesCS3B01G011300 chr3A 92.368 511 30 7 987 1489 7476901 7476392 0.000000e+00 719
11 TraesCS3B01G011300 chr3D 88.960 1096 91 19 1935 3011 1639663 1638579 0.000000e+00 1327
12 TraesCS3B01G011300 chr3D 87.511 1169 76 15 1065 2190 1337587 1338728 0.000000e+00 1286
13 TraesCS3B01G011300 chr3D 97.638 381 8 1 1065 1444 1640593 1640213 0.000000e+00 652
14 TraesCS3B01G011300 chr3D 83.482 672 64 11 1488 2140 1591414 1592057 1.990000e-162 582
15 TraesCS3B01G011300 chr3D 84.141 454 64 6 1935 2386 546541256 546541703 2.130000e-117 433
16 TraesCS3B01G011300 chr3D 83.830 235 26 10 2444 2673 1339082 1339309 3.010000e-51 213
17 TraesCS3B01G011300 chr4A 97.361 379 10 0 1058 1436 732517271 732516893 0.000000e+00 645
18 TraesCS3B01G011300 chr4A 95.116 389 14 5 2 390 663145680 663145297 3.290000e-170 608
19 TraesCS3B01G011300 chr4B 95.887 389 11 4 1 388 633150413 633150029 3.270000e-175 625
20 TraesCS3B01G011300 chr7D 96.774 372 12 0 1065 1436 7302268 7301897 4.230000e-174 621
21 TraesCS3B01G011300 chr7D 93.333 90 6 0 2526 2615 7300734 7300645 2.410000e-27 134
22 TraesCS3B01G011300 chr7B 95.385 390 12 5 1 389 741878743 741878359 1.970000e-172 616
23 TraesCS3B01G011300 chr7A 96.505 372 13 0 1065 1436 8262588 8262217 1.970000e-172 616
24 TraesCS3B01G011300 chr5B 95.373 389 14 3 2 389 36079089 36079474 1.970000e-172 616
25 TraesCS3B01G011300 chr5B 95.396 391 11 7 1 388 344537484 344537098 1.970000e-172 616
26 TraesCS3B01G011300 chr5B 95.141 391 15 4 1 389 583184826 583185214 7.070000e-172 614
27 TraesCS3B01G011300 chr1B 94.872 390 14 4 1 388 374867397 374867782 4.260000e-169 604
28 TraesCS3B01G011300 chr6B 94.207 397 14 7 1 394 670020045 670019655 7.120000e-167 597
29 TraesCS3B01G011300 chr6B 83.921 454 65 5 1935 2386 94240319 94239872 9.890000e-116 427
30 TraesCS3B01G011300 chr6B 93.333 90 6 0 2526 2615 265677438 265677349 2.410000e-27 134
31 TraesCS3B01G011300 chr2B 84.802 454 61 5 1935 2386 727307601 727308048 2.110000e-122 449
32 TraesCS3B01G011300 chr2D 83.921 454 65 5 1935 2386 56853232 56853679 9.890000e-116 427
33 TraesCS3B01G011300 chr2D 83.196 363 54 5 1935 2296 547752679 547752323 3.710000e-85 326


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G011300 chr3B 5168041 5171892 3851 False 7114.000000 7114 100.0000 1 3852 1 chr3B.!!$F2 3851
1 TraesCS3B01G011300 chr3B 3664463 3667462 2999 True 5216.000000 5216 98.0760 856 3852 1 chr3B.!!$R1 2996
2 TraesCS3B01G011300 chr3B 3407257 3408836 1579 False 796.500000 1389 86.2035 1024 2669 2 chr3B.!!$F3 1645
3 TraesCS3B01G011300 chr3B 5322019 5323689 1670 True 376.666667 664 90.0730 946 2673 3 chr3B.!!$R3 1727
4 TraesCS3B01G011300 chr3A 7474021 7476901 2880 True 1377.500000 2036 89.4430 987 3852 2 chr3A.!!$R1 2865
5 TraesCS3B01G011300 chr3D 1638579 1640593 2014 True 989.500000 1327 93.2990 1065 3011 2 chr3D.!!$R1 1946
6 TraesCS3B01G011300 chr3D 1337587 1339309 1722 False 749.500000 1286 85.6705 1065 2673 2 chr3D.!!$F3 1608
7 TraesCS3B01G011300 chr3D 1591414 1592057 643 False 582.000000 582 83.4820 1488 2140 1 chr3D.!!$F1 652
8 TraesCS3B01G011300 chr7D 7300645 7302268 1623 True 377.500000 621 95.0535 1065 2615 2 chr7D.!!$R1 1550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 915 0.033796 CCACTTCCAGGCCATGACAT 60.034 55.0 5.01 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3806 4985 3.774702 GGAAGAACGTCGTGCGCC 61.775 66.667 4.18 0.0 46.11 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.416747 CTCATTTGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
21 22 2.414481 CTCATTTGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
22 23 2.146342 CATTTGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
23 24 3.006430 TCATTTGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
24 25 3.462483 TTTGAGCTCGGTGAACAGTAA 57.538 42.857 9.64 0.00 0.00 2.24
25 26 3.462483 TTGAGCTCGGTGAACAGTAAA 57.538 42.857 9.64 0.00 0.00 2.01
26 27 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
27 28 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
28 29 3.994392 TGAGCTCGGTGAACAGTAAAATC 59.006 43.478 9.64 0.00 0.00 2.17
29 30 2.993899 AGCTCGGTGAACAGTAAAATCG 59.006 45.455 0.00 0.00 0.00 3.34
30 31 2.991190 GCTCGGTGAACAGTAAAATCGA 59.009 45.455 0.00 0.00 0.00 3.59
31 32 3.430895 GCTCGGTGAACAGTAAAATCGAA 59.569 43.478 0.00 0.00 0.00 3.71
32 33 4.084223 GCTCGGTGAACAGTAAAATCGAAA 60.084 41.667 0.00 0.00 0.00 3.46
33 34 5.559417 GCTCGGTGAACAGTAAAATCGAAAA 60.559 40.000 0.00 0.00 0.00 2.29
34 35 6.360844 TCGGTGAACAGTAAAATCGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
89 90 9.874205 AAAAATTCTCAGAGAAACATTGACAAA 57.126 25.926 17.00 0.00 37.82 2.83
90 91 9.874205 AAAATTCTCAGAGAAACATTGACAAAA 57.126 25.926 17.00 0.00 37.82 2.44
91 92 9.525409 AAATTCTCAGAGAAACATTGACAAAAG 57.475 29.630 17.00 0.00 37.82 2.27
92 93 7.630242 TTCTCAGAGAAACATTGACAAAAGT 57.370 32.000 10.68 0.00 29.99 2.66
93 94 7.630242 TCTCAGAGAAACATTGACAAAAGTT 57.370 32.000 0.00 0.00 0.00 2.66
94 95 7.697691 TCTCAGAGAAACATTGACAAAAGTTC 58.302 34.615 0.00 5.33 0.00 3.01
95 96 7.554118 TCTCAGAGAAACATTGACAAAAGTTCT 59.446 33.333 0.00 9.17 0.00 3.01
96 97 8.731275 TCAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
97 98 9.173021 TCAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
98 99 9.443283 CAGAGAAACATTGACAAAAGTTCTAAG 57.557 33.333 9.09 3.77 0.00 2.18
99 100 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
100 101 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
101 102 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
102 103 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
103 104 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
104 105 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
105 106 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
106 107 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
107 108 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
108 109 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
109 110 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
110 111 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
111 112 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
112 113 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
113 114 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
114 115 6.572519 AGTTCTAAGTGCTTGCAAAAATTCA 58.427 32.000 0.00 0.00 0.00 2.57
115 116 7.212274 AGTTCTAAGTGCTTGCAAAAATTCAT 58.788 30.769 0.00 0.00 0.00 2.57
116 117 7.383300 AGTTCTAAGTGCTTGCAAAAATTCATC 59.617 33.333 0.00 0.00 0.00 2.92
117 118 6.747125 TCTAAGTGCTTGCAAAAATTCATCA 58.253 32.000 0.00 0.00 0.00 3.07
118 119 7.380536 TCTAAGTGCTTGCAAAAATTCATCAT 58.619 30.769 0.00 0.00 0.00 2.45
119 120 5.856126 AGTGCTTGCAAAAATTCATCATG 57.144 34.783 0.00 0.00 0.00 3.07
120 121 5.543714 AGTGCTTGCAAAAATTCATCATGA 58.456 33.333 0.00 0.00 0.00 3.07
121 122 5.992829 AGTGCTTGCAAAAATTCATCATGAA 59.007 32.000 1.59 1.59 41.09 2.57
122 123 6.483974 AGTGCTTGCAAAAATTCATCATGAAA 59.516 30.769 3.63 0.00 40.12 2.69
123 124 7.174253 AGTGCTTGCAAAAATTCATCATGAAAT 59.826 29.630 3.63 0.00 40.12 2.17
124 125 7.480542 GTGCTTGCAAAAATTCATCATGAAATC 59.519 33.333 3.63 0.00 40.12 2.17
125 126 7.173390 TGCTTGCAAAAATTCATCATGAAATCA 59.827 29.630 3.63 0.00 40.12 2.57
126 127 7.480542 GCTTGCAAAAATTCATCATGAAATCAC 59.519 33.333 3.63 0.00 40.12 3.06
127 128 7.964604 TGCAAAAATTCATCATGAAATCACA 57.035 28.000 3.63 0.00 40.12 3.58
128 129 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
129 130 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
130 131 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
131 132 9.982291 CAAAAATTCATCATGAAATCACATTCC 57.018 29.630 3.63 0.00 40.12 3.01
132 133 9.953565 AAAAATTCATCATGAAATCACATTCCT 57.046 25.926 3.63 0.00 40.12 3.36
138 139 9.511272 TCATCATGAAATCACATTCCTATAAGG 57.489 33.333 0.00 0.00 36.46 2.69
139 140 7.750229 TCATGAAATCACATTCCTATAAGGC 57.250 36.000 0.00 0.00 34.61 4.35
140 141 6.427853 TCATGAAATCACATTCCTATAAGGCG 59.572 38.462 0.00 0.00 34.61 5.52
141 142 5.680619 TGAAATCACATTCCTATAAGGCGT 58.319 37.500 0.00 0.00 34.61 5.68
142 143 5.527214 TGAAATCACATTCCTATAAGGCGTG 59.473 40.000 0.00 0.00 34.61 5.34
143 144 3.469008 TCACATTCCTATAAGGCGTGG 57.531 47.619 8.95 0.00 34.61 4.94
144 145 1.873591 CACATTCCTATAAGGCGTGGC 59.126 52.381 0.00 0.00 34.61 5.01
145 146 1.488812 ACATTCCTATAAGGCGTGGCA 59.511 47.619 0.00 0.00 34.61 4.92
146 147 2.092646 ACATTCCTATAAGGCGTGGCAA 60.093 45.455 0.00 0.00 34.61 4.52
147 148 2.791347 TTCCTATAAGGCGTGGCAAA 57.209 45.000 0.00 0.00 34.61 3.68
148 149 2.791347 TCCTATAAGGCGTGGCAAAA 57.209 45.000 0.00 0.00 34.61 2.44
149 150 3.074675 TCCTATAAGGCGTGGCAAAAA 57.925 42.857 0.00 0.00 34.61 1.94
172 173 6.622833 AAAACAAATTCAGCCTCCAAAATG 57.377 33.333 0.00 0.00 0.00 2.32
173 174 3.667360 ACAAATTCAGCCTCCAAAATGC 58.333 40.909 0.00 0.00 0.00 3.56
174 175 3.325716 ACAAATTCAGCCTCCAAAATGCT 59.674 39.130 0.00 0.00 35.25 3.79
175 176 4.202388 ACAAATTCAGCCTCCAAAATGCTT 60.202 37.500 0.00 0.00 31.77 3.91
176 177 4.628963 AATTCAGCCTCCAAAATGCTTT 57.371 36.364 0.00 0.00 31.77 3.51
177 178 4.628963 ATTCAGCCTCCAAAATGCTTTT 57.371 36.364 0.00 0.00 31.77 2.27
195 196 6.804677 TGCTTTTGAAAGTAGCATTTTCAGA 58.195 32.000 0.45 4.38 43.22 3.27
196 197 6.919662 TGCTTTTGAAAGTAGCATTTTCAGAG 59.080 34.615 0.45 11.39 43.22 3.35
197 198 6.920210 GCTTTTGAAAGTAGCATTTTCAGAGT 59.080 34.615 5.47 0.00 43.22 3.24
198 199 8.076178 GCTTTTGAAAGTAGCATTTTCAGAGTA 58.924 33.333 5.47 0.00 43.22 2.59
199 200 9.387123 CTTTTGAAAGTAGCATTTTCAGAGTAC 57.613 33.333 9.30 0.00 43.22 2.73
200 201 7.435068 TTGAAAGTAGCATTTTCAGAGTACC 57.565 36.000 9.30 0.00 43.22 3.34
201 202 5.637810 TGAAAGTAGCATTTTCAGAGTACCG 59.362 40.000 6.29 0.00 39.05 4.02
202 203 5.401531 AAGTAGCATTTTCAGAGTACCGA 57.598 39.130 0.00 0.00 0.00 4.69
203 204 5.599999 AGTAGCATTTTCAGAGTACCGAT 57.400 39.130 0.00 0.00 0.00 4.18
204 205 5.978814 AGTAGCATTTTCAGAGTACCGATT 58.021 37.500 0.00 0.00 0.00 3.34
205 206 6.407202 AGTAGCATTTTCAGAGTACCGATTT 58.593 36.000 0.00 0.00 0.00 2.17
206 207 6.879458 AGTAGCATTTTCAGAGTACCGATTTT 59.121 34.615 0.00 0.00 0.00 1.82
207 208 5.942872 AGCATTTTCAGAGTACCGATTTTG 58.057 37.500 0.00 0.00 0.00 2.44
208 209 5.473504 AGCATTTTCAGAGTACCGATTTTGT 59.526 36.000 0.00 0.00 0.00 2.83
209 210 6.016276 AGCATTTTCAGAGTACCGATTTTGTT 60.016 34.615 0.00 0.00 0.00 2.83
210 211 6.640907 GCATTTTCAGAGTACCGATTTTGTTT 59.359 34.615 0.00 0.00 0.00 2.83
211 212 7.169140 GCATTTTCAGAGTACCGATTTTGTTTT 59.831 33.333 0.00 0.00 0.00 2.43
212 213 9.030301 CATTTTCAGAGTACCGATTTTGTTTTT 57.970 29.630 0.00 0.00 0.00 1.94
232 233 2.264005 TTTTTGCCACGCCTTCTAGA 57.736 45.000 0.00 0.00 0.00 2.43
233 234 2.264005 TTTTGCCACGCCTTCTAGAA 57.736 45.000 4.81 4.81 0.00 2.10
234 235 2.264005 TTTGCCACGCCTTCTAGAAA 57.736 45.000 6.63 0.00 0.00 2.52
235 236 2.489938 TTGCCACGCCTTCTAGAAAT 57.510 45.000 6.63 0.00 0.00 2.17
236 237 1.737838 TGCCACGCCTTCTAGAAATG 58.262 50.000 6.63 2.12 0.00 2.32
237 238 1.003118 TGCCACGCCTTCTAGAAATGT 59.997 47.619 6.63 2.59 0.00 2.71
238 239 1.398390 GCCACGCCTTCTAGAAATGTG 59.602 52.381 17.92 17.92 0.00 3.21
239 240 2.935238 GCCACGCCTTCTAGAAATGTGA 60.935 50.000 23.01 0.00 0.00 3.58
240 241 3.535561 CCACGCCTTCTAGAAATGTGAT 58.464 45.455 23.01 7.98 0.00 3.06
241 242 3.941483 CCACGCCTTCTAGAAATGTGATT 59.059 43.478 23.01 3.88 0.00 2.57
242 243 4.396166 CCACGCCTTCTAGAAATGTGATTT 59.604 41.667 23.01 3.35 34.64 2.17
243 244 5.447818 CCACGCCTTCTAGAAATGTGATTTC 60.448 44.000 23.01 0.00 46.90 2.17
259 260 9.689976 AATGTGATTTCATGACGAATTTTTACA 57.310 25.926 0.00 0.00 32.32 2.41
260 261 9.689976 ATGTGATTTCATGACGAATTTTTACAA 57.310 25.926 0.00 0.00 32.32 2.41
261 262 9.179552 TGTGATTTCATGACGAATTTTTACAAG 57.820 29.630 0.00 0.00 32.32 3.16
262 263 8.155923 GTGATTTCATGACGAATTTTTACAAGC 58.844 33.333 0.00 0.00 32.32 4.01
263 264 7.864882 TGATTTCATGACGAATTTTTACAAGCA 59.135 29.630 0.00 0.00 32.32 3.91
264 265 6.984740 TTCATGACGAATTTTTACAAGCAC 57.015 33.333 0.00 0.00 0.00 4.40
265 266 6.312399 TCATGACGAATTTTTACAAGCACT 57.688 33.333 0.00 0.00 0.00 4.40
266 267 6.734137 TCATGACGAATTTTTACAAGCACTT 58.266 32.000 0.00 0.00 0.00 3.16
267 268 7.866729 TCATGACGAATTTTTACAAGCACTTA 58.133 30.769 0.00 0.00 0.00 2.24
268 269 8.346300 TCATGACGAATTTTTACAAGCACTTAA 58.654 29.630 0.00 0.00 0.00 1.85
269 270 8.963130 CATGACGAATTTTTACAAGCACTTAAA 58.037 29.630 0.00 0.00 0.00 1.52
270 271 8.912787 TGACGAATTTTTACAAGCACTTAAAA 57.087 26.923 0.00 0.00 0.00 1.52
271 272 9.522804 TGACGAATTTTTACAAGCACTTAAAAT 57.477 25.926 0.00 0.00 31.70 1.82
283 284 8.998377 ACAAGCACTTAAAATTTTTGTCAAAGT 58.002 25.926 9.06 9.20 0.00 2.66
284 285 9.824534 CAAGCACTTAAAATTTTTGTCAAAGTT 57.175 25.926 9.06 0.00 0.00 2.66
351 352 4.735662 TTTCGATTTTACTGTTCACCCG 57.264 40.909 0.00 0.00 0.00 5.28
352 353 3.663995 TCGATTTTACTGTTCACCCGA 57.336 42.857 0.00 0.00 0.00 5.14
353 354 3.581755 TCGATTTTACTGTTCACCCGAG 58.418 45.455 0.00 0.00 0.00 4.63
354 355 2.093783 CGATTTTACTGTTCACCCGAGC 59.906 50.000 0.00 0.00 0.00 5.03
355 356 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
356 357 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
357 358 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
358 359 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
359 360 1.557099 ACTGTTCACCCGAGCTCATA 58.443 50.000 15.40 0.00 0.00 2.15
360 361 2.111384 ACTGTTCACCCGAGCTCATAT 58.889 47.619 15.40 0.00 0.00 1.78
361 362 2.159043 ACTGTTCACCCGAGCTCATATG 60.159 50.000 15.40 8.10 0.00 1.78
362 363 2.101415 CTGTTCACCCGAGCTCATATGA 59.899 50.000 15.40 10.42 0.00 2.15
363 364 2.101415 TGTTCACCCGAGCTCATATGAG 59.899 50.000 25.64 25.64 44.75 2.90
372 373 3.207677 CTCATATGAGCTCGGGTGC 57.792 57.895 19.47 0.00 35.13 5.01
373 374 0.390492 CTCATATGAGCTCGGGTGCA 59.610 55.000 19.47 0.00 35.13 4.57
374 375 0.390492 TCATATGAGCTCGGGTGCAG 59.610 55.000 9.64 0.00 34.99 4.41
375 376 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
376 377 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
377 378 0.901827 TATGAGCTCGGGTGCAGAAA 59.098 50.000 9.64 0.00 34.99 2.52
378 379 0.674895 ATGAGCTCGGGTGCAGAAAC 60.675 55.000 9.64 0.00 34.99 2.78
379 380 1.004440 GAGCTCGGGTGCAGAAACT 60.004 57.895 0.00 0.00 34.99 2.66
380 381 1.004440 AGCTCGGGTGCAGAAACTC 60.004 57.895 0.00 0.00 34.99 3.01
381 382 2.035442 GCTCGGGTGCAGAAACTCC 61.035 63.158 0.00 0.00 0.00 3.85
382 383 1.371183 CTCGGGTGCAGAAACTCCA 59.629 57.895 0.00 0.00 0.00 3.86
383 384 0.951040 CTCGGGTGCAGAAACTCCAC 60.951 60.000 0.00 0.00 0.00 4.02
384 385 2.317609 CGGGTGCAGAAACTCCACG 61.318 63.158 0.00 0.00 0.00 4.94
385 386 1.227853 GGGTGCAGAAACTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
386 387 1.228657 GGGTGCAGAAACTCCACGTC 61.229 60.000 0.00 0.00 0.00 4.34
387 388 1.228657 GGTGCAGAAACTCCACGTCC 61.229 60.000 0.00 0.00 0.00 4.79
388 389 1.070786 TGCAGAAACTCCACGTCCC 59.929 57.895 0.00 0.00 0.00 4.46
389 390 1.371558 GCAGAAACTCCACGTCCCT 59.628 57.895 0.00 0.00 0.00 4.20
390 391 0.606604 GCAGAAACTCCACGTCCCTA 59.393 55.000 0.00 0.00 0.00 3.53
391 392 1.001633 GCAGAAACTCCACGTCCCTAA 59.998 52.381 0.00 0.00 0.00 2.69
392 393 2.354805 GCAGAAACTCCACGTCCCTAAT 60.355 50.000 0.00 0.00 0.00 1.73
393 394 3.118884 GCAGAAACTCCACGTCCCTAATA 60.119 47.826 0.00 0.00 0.00 0.98
394 395 4.430908 CAGAAACTCCACGTCCCTAATAC 58.569 47.826 0.00 0.00 0.00 1.89
395 396 4.081862 CAGAAACTCCACGTCCCTAATACA 60.082 45.833 0.00 0.00 0.00 2.29
396 397 4.529377 AGAAACTCCACGTCCCTAATACAA 59.471 41.667 0.00 0.00 0.00 2.41
397 398 5.189145 AGAAACTCCACGTCCCTAATACAAT 59.811 40.000 0.00 0.00 0.00 2.71
398 399 4.667519 ACTCCACGTCCCTAATACAATC 57.332 45.455 0.00 0.00 0.00 2.67
399 400 4.028131 ACTCCACGTCCCTAATACAATCA 58.972 43.478 0.00 0.00 0.00 2.57
400 401 4.468510 ACTCCACGTCCCTAATACAATCAA 59.531 41.667 0.00 0.00 0.00 2.57
401 402 5.046159 ACTCCACGTCCCTAATACAATCAAA 60.046 40.000 0.00 0.00 0.00 2.69
402 403 5.996644 TCCACGTCCCTAATACAATCAAAT 58.003 37.500 0.00 0.00 0.00 2.32
403 404 6.419791 TCCACGTCCCTAATACAATCAAATT 58.580 36.000 0.00 0.00 0.00 1.82
404 405 6.887545 TCCACGTCCCTAATACAATCAAATTT 59.112 34.615 0.00 0.00 0.00 1.82
405 406 7.394923 TCCACGTCCCTAATACAATCAAATTTT 59.605 33.333 0.00 0.00 0.00 1.82
406 407 8.032451 CCACGTCCCTAATACAATCAAATTTTT 58.968 33.333 0.00 0.00 0.00 1.94
409 410 9.730420 CGTCCCTAATACAATCAAATTTTTAGG 57.270 33.333 12.66 12.66 35.87 2.69
437 438 3.673543 TTTTTAGGGGGACAGTGTGTT 57.326 42.857 0.00 0.00 0.00 3.32
438 439 3.673543 TTTTAGGGGGACAGTGTGTTT 57.326 42.857 0.00 0.00 0.00 2.83
439 440 3.673543 TTTAGGGGGACAGTGTGTTTT 57.326 42.857 0.00 0.00 0.00 2.43
440 441 3.673543 TTAGGGGGACAGTGTGTTTTT 57.326 42.857 0.00 0.00 0.00 1.94
441 442 2.067365 AGGGGGACAGTGTGTTTTTC 57.933 50.000 0.00 0.00 0.00 2.29
442 443 1.286553 AGGGGGACAGTGTGTTTTTCA 59.713 47.619 0.00 0.00 0.00 2.69
443 444 2.091333 AGGGGGACAGTGTGTTTTTCAT 60.091 45.455 0.00 0.00 0.00 2.57
444 445 2.035832 GGGGGACAGTGTGTTTTTCATG 59.964 50.000 0.00 0.00 0.00 3.07
445 446 2.955660 GGGGACAGTGTGTTTTTCATGA 59.044 45.455 0.00 0.00 0.00 3.07
446 447 3.383185 GGGGACAGTGTGTTTTTCATGAA 59.617 43.478 3.38 3.38 0.00 2.57
447 448 4.039124 GGGGACAGTGTGTTTTTCATGAAT 59.961 41.667 9.40 0.00 0.00 2.57
448 449 5.242838 GGGGACAGTGTGTTTTTCATGAATA 59.757 40.000 9.40 1.04 0.00 1.75
449 450 6.381801 GGGACAGTGTGTTTTTCATGAATAG 58.618 40.000 9.40 0.00 0.00 1.73
450 451 6.016276 GGGACAGTGTGTTTTTCATGAATAGT 60.016 38.462 9.40 0.00 0.00 2.12
451 452 6.857964 GGACAGTGTGTTTTTCATGAATAGTG 59.142 38.462 9.40 1.88 0.00 2.74
452 453 7.333528 ACAGTGTGTTTTTCATGAATAGTGT 57.666 32.000 9.40 2.52 0.00 3.55
453 454 7.195646 ACAGTGTGTTTTTCATGAATAGTGTG 58.804 34.615 9.40 3.00 0.00 3.82
454 455 7.148086 ACAGTGTGTTTTTCATGAATAGTGTGT 60.148 33.333 9.40 3.59 0.00 3.72
455 456 7.166307 CAGTGTGTTTTTCATGAATAGTGTGTG 59.834 37.037 9.40 0.00 0.00 3.82
456 457 7.066887 AGTGTGTTTTTCATGAATAGTGTGTGA 59.933 33.333 9.40 0.00 0.00 3.58
457 458 7.376866 GTGTGTTTTTCATGAATAGTGTGTGAG 59.623 37.037 9.40 0.00 0.00 3.51
458 459 7.066887 TGTGTTTTTCATGAATAGTGTGTGAGT 59.933 33.333 9.40 0.00 0.00 3.41
459 460 7.376866 GTGTTTTTCATGAATAGTGTGTGAGTG 59.623 37.037 9.40 0.00 0.00 3.51
460 461 6.558771 TTTTCATGAATAGTGTGTGAGTGG 57.441 37.500 9.40 0.00 0.00 4.00
461 462 4.890158 TCATGAATAGTGTGTGAGTGGT 57.110 40.909 0.00 0.00 0.00 4.16
462 463 5.227569 TCATGAATAGTGTGTGAGTGGTT 57.772 39.130 0.00 0.00 0.00 3.67
463 464 6.353404 TCATGAATAGTGTGTGAGTGGTTA 57.647 37.500 0.00 0.00 0.00 2.85
464 465 6.946340 TCATGAATAGTGTGTGAGTGGTTAT 58.054 36.000 0.00 0.00 0.00 1.89
465 466 8.073467 TCATGAATAGTGTGTGAGTGGTTATA 57.927 34.615 0.00 0.00 0.00 0.98
466 467 8.704668 TCATGAATAGTGTGTGAGTGGTTATAT 58.295 33.333 0.00 0.00 0.00 0.86
467 468 9.330063 CATGAATAGTGTGTGAGTGGTTATATT 57.670 33.333 0.00 0.00 0.00 1.28
468 469 8.942338 TGAATAGTGTGTGAGTGGTTATATTC 57.058 34.615 0.00 0.00 0.00 1.75
469 470 8.758829 TGAATAGTGTGTGAGTGGTTATATTCT 58.241 33.333 0.00 0.00 31.53 2.40
470 471 9.601217 GAATAGTGTGTGAGTGGTTATATTCTT 57.399 33.333 0.00 0.00 0.00 2.52
471 472 8.948631 ATAGTGTGTGAGTGGTTATATTCTTG 57.051 34.615 0.00 0.00 0.00 3.02
472 473 6.769512 AGTGTGTGAGTGGTTATATTCTTGT 58.230 36.000 0.00 0.00 0.00 3.16
473 474 7.224297 AGTGTGTGAGTGGTTATATTCTTGTT 58.776 34.615 0.00 0.00 0.00 2.83
474 475 7.173218 AGTGTGTGAGTGGTTATATTCTTGTTG 59.827 37.037 0.00 0.00 0.00 3.33
475 476 6.072728 TGTGTGAGTGGTTATATTCTTGTTGC 60.073 38.462 0.00 0.00 0.00 4.17
476 477 6.000840 TGTGAGTGGTTATATTCTTGTTGCA 58.999 36.000 0.00 0.00 0.00 4.08
477 478 6.658816 TGTGAGTGGTTATATTCTTGTTGCAT 59.341 34.615 0.00 0.00 0.00 3.96
478 479 7.176515 TGTGAGTGGTTATATTCTTGTTGCATT 59.823 33.333 0.00 0.00 0.00 3.56
479 480 8.028938 GTGAGTGGTTATATTCTTGTTGCATTT 58.971 33.333 0.00 0.00 0.00 2.32
480 481 8.028354 TGAGTGGTTATATTCTTGTTGCATTTG 58.972 33.333 0.00 0.00 0.00 2.32
481 482 7.895759 AGTGGTTATATTCTTGTTGCATTTGT 58.104 30.769 0.00 0.00 0.00 2.83
482 483 9.019656 AGTGGTTATATTCTTGTTGCATTTGTA 57.980 29.630 0.00 0.00 0.00 2.41
483 484 9.801873 GTGGTTATATTCTTGTTGCATTTGTAT 57.198 29.630 0.00 0.00 0.00 2.29
490 491 8.757982 ATTCTTGTTGCATTTGTATCTATCCT 57.242 30.769 0.00 0.00 0.00 3.24
491 492 7.558161 TCTTGTTGCATTTGTATCTATCCTG 57.442 36.000 0.00 0.00 0.00 3.86
492 493 5.756195 TGTTGCATTTGTATCTATCCTGC 57.244 39.130 0.00 0.00 0.00 4.85
493 494 5.192176 TGTTGCATTTGTATCTATCCTGCA 58.808 37.500 0.00 0.00 36.45 4.41
494 495 5.066375 TGTTGCATTTGTATCTATCCTGCAC 59.934 40.000 0.00 0.00 37.82 4.57
495 496 4.779696 TGCATTTGTATCTATCCTGCACA 58.220 39.130 0.00 0.00 33.59 4.57
496 497 5.379187 TGCATTTGTATCTATCCTGCACAT 58.621 37.500 0.00 0.00 33.59 3.21
497 498 5.239963 TGCATTTGTATCTATCCTGCACATG 59.760 40.000 0.00 0.00 33.59 3.21
498 499 5.240183 GCATTTGTATCTATCCTGCACATGT 59.760 40.000 0.00 0.00 0.00 3.21
499 500 6.238842 GCATTTGTATCTATCCTGCACATGTT 60.239 38.462 0.00 0.00 0.00 2.71
500 501 6.925610 TTTGTATCTATCCTGCACATGTTC 57.074 37.500 0.00 0.00 0.00 3.18
501 502 4.620982 TGTATCTATCCTGCACATGTTCG 58.379 43.478 0.00 0.00 0.00 3.95
502 503 3.827008 ATCTATCCTGCACATGTTCGT 57.173 42.857 0.00 0.00 0.00 3.85
503 504 3.165058 TCTATCCTGCACATGTTCGTC 57.835 47.619 0.00 0.00 0.00 4.20
504 505 2.760650 TCTATCCTGCACATGTTCGTCT 59.239 45.455 0.00 0.00 0.00 4.18
505 506 2.015736 ATCCTGCACATGTTCGTCTC 57.984 50.000 0.00 0.00 0.00 3.36
506 507 0.969149 TCCTGCACATGTTCGTCTCT 59.031 50.000 0.00 0.00 0.00 3.10
507 508 1.073964 CCTGCACATGTTCGTCTCTG 58.926 55.000 0.00 0.00 0.00 3.35
508 509 1.073964 CTGCACATGTTCGTCTCTGG 58.926 55.000 0.00 0.00 0.00 3.86
509 510 0.950555 TGCACATGTTCGTCTCTGGC 60.951 55.000 0.00 0.00 0.00 4.85
510 511 1.639298 GCACATGTTCGTCTCTGGCC 61.639 60.000 0.00 0.00 0.00 5.36
511 512 1.021390 CACATGTTCGTCTCTGGCCC 61.021 60.000 0.00 0.00 0.00 5.80
512 513 1.811266 CATGTTCGTCTCTGGCCCG 60.811 63.158 0.00 0.00 0.00 6.13
513 514 3.665675 ATGTTCGTCTCTGGCCCGC 62.666 63.158 0.00 0.00 0.00 6.13
518 519 4.785453 GTCTCTGGCCCGCCAAGG 62.785 72.222 10.16 5.64 46.63 3.61
526 527 4.424711 CCCGCCAAGGCAGCCTAA 62.425 66.667 16.56 0.00 42.06 2.69
527 528 3.134127 CCGCCAAGGCAGCCTAAC 61.134 66.667 16.56 6.28 42.06 2.34
528 529 2.359850 CGCCAAGGCAGCCTAACA 60.360 61.111 16.56 0.00 42.06 2.41
529 530 2.401766 CGCCAAGGCAGCCTAACAG 61.402 63.158 16.56 4.92 42.06 3.16
530 531 1.303643 GCCAAGGCAGCCTAACAGT 60.304 57.895 16.56 0.00 41.49 3.55
531 532 1.308783 GCCAAGGCAGCCTAACAGTC 61.309 60.000 16.56 0.00 41.49 3.51
532 533 0.036732 CCAAGGCAGCCTAACAGTCA 59.963 55.000 16.56 0.00 31.13 3.41
533 534 1.446907 CAAGGCAGCCTAACAGTCAG 58.553 55.000 16.56 0.00 31.13 3.51
534 535 0.326264 AAGGCAGCCTAACAGTCAGG 59.674 55.000 16.56 0.00 31.13 3.86
535 536 0.838122 AGGCAGCCTAACAGTCAGGT 60.838 55.000 14.18 0.00 35.45 4.00
536 537 0.391793 GGCAGCCTAACAGTCAGGTC 60.392 60.000 3.29 0.00 35.45 3.85
537 538 0.321671 GCAGCCTAACAGTCAGGTCA 59.678 55.000 0.00 0.00 35.45 4.02
538 539 1.674221 GCAGCCTAACAGTCAGGTCAG 60.674 57.143 0.00 0.00 35.45 3.51
539 540 1.620819 CAGCCTAACAGTCAGGTCAGT 59.379 52.381 0.00 0.00 35.45 3.41
540 541 2.826128 CAGCCTAACAGTCAGGTCAGTA 59.174 50.000 0.00 0.00 35.45 2.74
541 542 3.093057 AGCCTAACAGTCAGGTCAGTAG 58.907 50.000 0.00 0.00 35.45 2.57
542 543 3.090037 GCCTAACAGTCAGGTCAGTAGA 58.910 50.000 0.00 0.00 35.45 2.59
543 544 3.510360 GCCTAACAGTCAGGTCAGTAGAA 59.490 47.826 0.00 0.00 35.45 2.10
544 545 4.021368 GCCTAACAGTCAGGTCAGTAGAAA 60.021 45.833 0.00 0.00 35.45 2.52
545 546 5.715070 CCTAACAGTCAGGTCAGTAGAAAG 58.285 45.833 0.00 0.00 0.00 2.62
546 547 4.608948 AACAGTCAGGTCAGTAGAAAGG 57.391 45.455 0.00 0.00 0.00 3.11
547 548 2.300437 ACAGTCAGGTCAGTAGAAAGGC 59.700 50.000 0.00 0.00 0.00 4.35
548 549 2.564947 CAGTCAGGTCAGTAGAAAGGCT 59.435 50.000 0.00 0.00 0.00 4.58
549 550 2.564947 AGTCAGGTCAGTAGAAAGGCTG 59.435 50.000 0.00 0.00 0.00 4.85
550 551 2.563179 GTCAGGTCAGTAGAAAGGCTGA 59.437 50.000 0.00 0.00 39.17 4.26
554 555 1.276622 TCAGTAGAAAGGCTGACCCC 58.723 55.000 0.00 0.00 36.89 4.95
555 556 0.253327 CAGTAGAAAGGCTGACCCCC 59.747 60.000 0.00 0.00 36.11 5.40
576 577 6.072112 CCCCCAACATTTTTATGATACTCG 57.928 41.667 0.00 0.00 0.00 4.18
577 578 5.592688 CCCCCAACATTTTTATGATACTCGT 59.407 40.000 0.00 0.00 0.00 4.18
578 579 6.459573 CCCCCAACATTTTTATGATACTCGTG 60.460 42.308 0.00 0.00 0.00 4.35
579 580 6.317642 CCCCAACATTTTTATGATACTCGTGA 59.682 38.462 0.00 0.00 0.00 4.35
580 581 7.013274 CCCCAACATTTTTATGATACTCGTGAT 59.987 37.037 0.00 0.00 0.00 3.06
581 582 8.070171 CCCAACATTTTTATGATACTCGTGATC 58.930 37.037 0.00 0.00 0.00 2.92
582 583 8.611757 CCAACATTTTTATGATACTCGTGATCA 58.388 33.333 0.00 0.00 37.70 2.92
593 594 7.621102 TGATACTCGTGATCATTTTTGAATCG 58.379 34.615 0.00 0.00 0.00 3.34
594 595 5.221891 ACTCGTGATCATTTTTGAATCGG 57.778 39.130 0.00 0.00 0.00 4.18
595 596 4.935205 ACTCGTGATCATTTTTGAATCGGA 59.065 37.500 0.00 0.00 0.00 4.55
596 597 5.063944 ACTCGTGATCATTTTTGAATCGGAG 59.936 40.000 0.00 0.00 0.00 4.63
597 598 5.175127 TCGTGATCATTTTTGAATCGGAGA 58.825 37.500 0.00 0.00 45.75 3.71
598 599 5.641636 TCGTGATCATTTTTGAATCGGAGAA 59.358 36.000 0.00 0.00 43.58 2.87
599 600 5.734498 CGTGATCATTTTTGAATCGGAGAAC 59.266 40.000 0.00 0.00 43.58 3.01
600 601 6.611381 GTGATCATTTTTGAATCGGAGAACA 58.389 36.000 0.00 0.00 43.58 3.18
601 602 7.253422 GTGATCATTTTTGAATCGGAGAACAT 58.747 34.615 0.00 0.00 43.58 2.71
602 603 7.756722 GTGATCATTTTTGAATCGGAGAACATT 59.243 33.333 0.00 0.00 43.58 2.71
603 604 8.306038 TGATCATTTTTGAATCGGAGAACATTT 58.694 29.630 0.00 0.00 43.58 2.32
604 605 9.143631 GATCATTTTTGAATCGGAGAACATTTT 57.856 29.630 0.00 0.00 43.58 1.82
605 606 8.885494 TCATTTTTGAATCGGAGAACATTTTT 57.115 26.923 0.00 0.00 43.58 1.94
705 706 7.706281 TTTTTGAAGCAGCGAATATTTTTGA 57.294 28.000 0.00 0.00 0.00 2.69
706 707 7.706281 TTTTGAAGCAGCGAATATTTTTGAA 57.294 28.000 0.00 0.00 0.00 2.69
707 708 7.887996 TTTGAAGCAGCGAATATTTTTGAAT 57.112 28.000 0.00 0.00 0.00 2.57
708 709 7.510428 TTGAAGCAGCGAATATTTTTGAATC 57.490 32.000 0.00 0.00 0.00 2.52
709 710 5.738693 TGAAGCAGCGAATATTTTTGAATCG 59.261 36.000 0.00 0.00 36.64 3.34
710 711 5.484173 AGCAGCGAATATTTTTGAATCGA 57.516 34.783 0.00 0.00 35.65 3.59
711 712 6.064846 AGCAGCGAATATTTTTGAATCGAT 57.935 33.333 0.00 0.00 35.65 3.59
716 717 7.642669 AGCGAATATTTTTGAATCGATGATGT 58.357 30.769 0.00 0.00 35.65 3.06
717 718 8.131100 AGCGAATATTTTTGAATCGATGATGTT 58.869 29.630 0.00 0.00 35.65 2.71
718 719 8.745837 GCGAATATTTTTGAATCGATGATGTTT 58.254 29.630 0.00 0.00 35.65 2.83
747 748 9.823098 TGAAATTTGGAATCAATTATTTTTGCG 57.177 25.926 0.00 0.00 28.85 4.85
750 751 9.824534 AATTTGGAATCAATTATTTTTGCGAAC 57.175 25.926 0.00 0.00 32.28 3.95
751 752 7.953158 TTGGAATCAATTATTTTTGCGAACA 57.047 28.000 0.00 0.00 0.00 3.18
752 753 8.545229 TTGGAATCAATTATTTTTGCGAACAT 57.455 26.923 0.00 0.00 0.00 2.71
753 754 8.545229 TGGAATCAATTATTTTTGCGAACATT 57.455 26.923 0.00 0.00 0.00 2.71
754 755 8.997323 TGGAATCAATTATTTTTGCGAACATTT 58.003 25.926 0.00 0.00 0.00 2.32
755 756 9.824534 GGAATCAATTATTTTTGCGAACATTTT 57.175 25.926 0.00 0.00 0.00 1.82
891 892 2.037847 GGGTGCTGGGCCAAATCT 59.962 61.111 8.04 0.00 0.00 2.40
902 903 2.583472 CCAAATCTGGCCCACTTCC 58.417 57.895 0.00 0.00 35.39 3.46
912 913 1.379044 CCCACTTCCAGGCCATGAC 60.379 63.158 5.01 0.00 0.00 3.06
913 914 1.379916 CCACTTCCAGGCCATGACA 59.620 57.895 5.01 0.00 0.00 3.58
914 915 0.033796 CCACTTCCAGGCCATGACAT 60.034 55.000 5.01 0.00 0.00 3.06
915 916 1.100510 CACTTCCAGGCCATGACATG 58.899 55.000 5.01 8.56 0.00 3.21
916 917 0.994247 ACTTCCAGGCCATGACATGA 59.006 50.000 17.24 0.00 0.00 3.07
917 918 1.567649 ACTTCCAGGCCATGACATGAT 59.432 47.619 17.24 0.00 0.00 2.45
918 919 2.228059 CTTCCAGGCCATGACATGATC 58.772 52.381 17.24 8.23 0.00 2.92
919 920 1.215140 TCCAGGCCATGACATGATCA 58.785 50.000 17.24 0.00 43.13 2.92
920 921 1.134007 TCCAGGCCATGACATGATCAC 60.134 52.381 17.24 4.08 41.24 3.06
921 922 1.315690 CAGGCCATGACATGATCACC 58.684 55.000 17.24 11.81 41.24 4.02
922 923 0.184451 AGGCCATGACATGATCACCC 59.816 55.000 17.24 8.54 41.24 4.61
923 924 0.106569 GGCCATGACATGATCACCCA 60.107 55.000 17.24 0.00 41.24 4.51
924 925 1.027357 GCCATGACATGATCACCCAC 58.973 55.000 17.24 0.00 41.24 4.61
925 926 1.683943 CCATGACATGATCACCCACC 58.316 55.000 17.24 0.00 41.24 4.61
926 927 1.683943 CATGACATGATCACCCACCC 58.316 55.000 10.03 0.00 41.24 4.61
927 928 1.064537 CATGACATGATCACCCACCCA 60.065 52.381 10.03 0.00 41.24 4.51
954 955 2.158726 ACGAGCAAAACCAAACCCTAGA 60.159 45.455 0.00 0.00 0.00 2.43
956 957 2.820197 GAGCAAAACCAAACCCTAGAGG 59.180 50.000 0.00 0.00 43.78 3.69
3445 4607 7.009083 CGTTCAGTGAGCTATGAATATGATAGC 59.991 40.741 14.98 14.98 45.92 2.97
3806 4985 0.322906 GCCTCCCTTCTCCAACCAAG 60.323 60.000 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.224281 ACTGTTCACCGAGCTCAAATGA 60.224 45.455 15.40 10.78 0.00 2.57
3 4 2.550830 ACTGTTCACCGAGCTCAAAT 57.449 45.000 15.40 0.00 0.00 2.32
4 5 3.462483 TTACTGTTCACCGAGCTCAAA 57.538 42.857 15.40 0.00 0.00 2.69
5 6 3.462483 TTTACTGTTCACCGAGCTCAA 57.538 42.857 15.40 0.00 0.00 3.02
6 7 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
7 8 3.060895 CGATTTTACTGTTCACCGAGCTC 59.939 47.826 2.73 2.73 0.00 4.09
8 9 2.993899 CGATTTTACTGTTCACCGAGCT 59.006 45.455 0.00 0.00 0.00 4.09
9 10 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
10 11 5.585500 TTTCGATTTTACTGTTCACCGAG 57.415 39.130 0.00 0.00 0.00 4.63
11 12 5.987777 TTTTCGATTTTACTGTTCACCGA 57.012 34.783 0.00 0.00 0.00 4.69
63 64 9.874205 TTTGTCAATGTTTCTCTGAGAATTTTT 57.126 25.926 19.93 11.02 33.67 1.94
64 65 9.874205 TTTTGTCAATGTTTCTCTGAGAATTTT 57.126 25.926 19.93 11.32 33.67 1.82
65 66 9.525409 CTTTTGTCAATGTTTCTCTGAGAATTT 57.475 29.630 19.93 11.63 33.67 1.82
66 67 8.689972 ACTTTTGTCAATGTTTCTCTGAGAATT 58.310 29.630 19.93 9.54 33.67 2.17
67 68 8.230472 ACTTTTGTCAATGTTTCTCTGAGAAT 57.770 30.769 19.93 3.66 33.67 2.40
68 69 7.630242 ACTTTTGTCAATGTTTCTCTGAGAA 57.370 32.000 15.82 15.82 31.28 2.87
69 70 7.554118 AGAACTTTTGTCAATGTTTCTCTGAGA 59.446 33.333 2.58 2.58 31.96 3.27
70 71 7.701445 AGAACTTTTGTCAATGTTTCTCTGAG 58.299 34.615 0.00 0.00 31.96 3.35
71 72 7.630242 AGAACTTTTGTCAATGTTTCTCTGA 57.370 32.000 6.10 0.00 31.96 3.27
72 73 9.443283 CTTAGAACTTTTGTCAATGTTTCTCTG 57.557 33.333 6.42 0.64 31.96 3.35
73 74 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
74 75 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
75 76 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
76 77 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
77 78 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
78 79 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
79 80 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
80 81 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
81 82 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
82 83 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
83 84 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
84 85 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
85 86 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
86 87 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
87 88 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
88 89 7.548780 TGAATTTTTGCAAGCACTTAGAACTTT 59.451 29.630 0.00 0.00 0.00 2.66
89 90 7.041107 TGAATTTTTGCAAGCACTTAGAACTT 58.959 30.769 0.00 0.00 0.00 2.66
90 91 6.572519 TGAATTTTTGCAAGCACTTAGAACT 58.427 32.000 0.00 0.00 0.00 3.01
91 92 6.826893 TGAATTTTTGCAAGCACTTAGAAC 57.173 33.333 0.00 0.00 0.00 3.01
92 93 7.208777 TGATGAATTTTTGCAAGCACTTAGAA 58.791 30.769 0.00 0.00 0.00 2.10
93 94 6.747125 TGATGAATTTTTGCAAGCACTTAGA 58.253 32.000 0.00 0.00 0.00 2.10
94 95 7.329962 TCATGATGAATTTTTGCAAGCACTTAG 59.670 33.333 0.00 0.00 0.00 2.18
95 96 7.153315 TCATGATGAATTTTTGCAAGCACTTA 58.847 30.769 0.00 0.00 0.00 2.24
96 97 5.992829 TCATGATGAATTTTTGCAAGCACTT 59.007 32.000 0.00 0.00 0.00 3.16
97 98 5.543714 TCATGATGAATTTTTGCAAGCACT 58.456 33.333 0.00 0.00 0.00 4.40
98 99 5.849357 TCATGATGAATTTTTGCAAGCAC 57.151 34.783 0.00 0.00 0.00 4.40
99 100 6.862711 TTTCATGATGAATTTTTGCAAGCA 57.137 29.167 8.90 0.00 36.11 3.91
100 101 7.480542 GTGATTTCATGATGAATTTTTGCAAGC 59.519 33.333 8.90 0.00 36.11 4.01
101 102 8.499967 TGTGATTTCATGATGAATTTTTGCAAG 58.500 29.630 8.90 0.00 36.11 4.01
102 103 8.379457 TGTGATTTCATGATGAATTTTTGCAA 57.621 26.923 8.90 0.00 36.11 4.08
103 104 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
104 105 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
105 106 9.982291 GGAATGTGATTTCATGATGAATTTTTG 57.018 29.630 8.90 0.00 36.11 2.44
106 107 9.953565 AGGAATGTGATTTCATGATGAATTTTT 57.046 25.926 8.90 0.00 36.11 1.94
112 113 9.511272 CCTTATAGGAATGTGATTTCATGATGA 57.489 33.333 0.00 0.00 37.67 2.92
113 114 8.242053 GCCTTATAGGAATGTGATTTCATGATG 58.758 37.037 0.00 0.00 37.67 3.07
114 115 7.120285 CGCCTTATAGGAATGTGATTTCATGAT 59.880 37.037 0.00 0.00 37.67 2.45
115 116 6.427853 CGCCTTATAGGAATGTGATTTCATGA 59.572 38.462 0.00 0.00 37.67 3.07
116 117 6.205464 ACGCCTTATAGGAATGTGATTTCATG 59.795 38.462 0.00 0.00 37.67 3.07
117 118 6.205464 CACGCCTTATAGGAATGTGATTTCAT 59.795 38.462 0.00 0.00 37.67 2.57
118 119 5.527214 CACGCCTTATAGGAATGTGATTTCA 59.473 40.000 0.00 0.00 37.67 2.69
119 120 5.049405 CCACGCCTTATAGGAATGTGATTTC 60.049 44.000 12.05 0.00 37.67 2.17
120 121 4.821805 CCACGCCTTATAGGAATGTGATTT 59.178 41.667 12.05 0.00 37.67 2.17
121 122 4.389374 CCACGCCTTATAGGAATGTGATT 58.611 43.478 12.05 0.00 37.67 2.57
122 123 3.807209 GCCACGCCTTATAGGAATGTGAT 60.807 47.826 12.05 0.00 37.67 3.06
123 124 2.484770 GCCACGCCTTATAGGAATGTGA 60.485 50.000 12.05 0.00 37.67 3.58
124 125 1.873591 GCCACGCCTTATAGGAATGTG 59.126 52.381 0.00 2.20 37.67 3.21
125 126 1.488812 TGCCACGCCTTATAGGAATGT 59.511 47.619 0.00 0.00 37.67 2.71
126 127 2.254546 TGCCACGCCTTATAGGAATG 57.745 50.000 0.00 0.00 37.67 2.67
127 128 3.290948 TTTGCCACGCCTTATAGGAAT 57.709 42.857 0.00 0.00 37.67 3.01
128 129 2.791347 TTTGCCACGCCTTATAGGAA 57.209 45.000 0.00 0.00 37.67 3.36
129 130 2.791347 TTTTGCCACGCCTTATAGGA 57.209 45.000 0.00 0.00 37.67 2.94
148 149 6.459985 GCATTTTGGAGGCTGAATTTGTTTTT 60.460 34.615 0.00 0.00 0.00 1.94
149 150 5.008911 GCATTTTGGAGGCTGAATTTGTTTT 59.991 36.000 0.00 0.00 0.00 2.43
150 151 4.516321 GCATTTTGGAGGCTGAATTTGTTT 59.484 37.500 0.00 0.00 0.00 2.83
151 152 4.067192 GCATTTTGGAGGCTGAATTTGTT 58.933 39.130 0.00 0.00 0.00 2.83
152 153 3.325716 AGCATTTTGGAGGCTGAATTTGT 59.674 39.130 0.00 0.00 36.34 2.83
153 154 3.934068 AGCATTTTGGAGGCTGAATTTG 58.066 40.909 0.00 0.00 36.34 2.32
154 155 4.628963 AAGCATTTTGGAGGCTGAATTT 57.371 36.364 0.00 0.00 38.04 1.82
155 156 4.628963 AAAGCATTTTGGAGGCTGAATT 57.371 36.364 0.00 0.00 31.62 2.17
172 173 6.920210 ACTCTGAAAATGCTACTTTCAAAAGC 59.080 34.615 2.43 0.00 41.10 3.51
173 174 9.387123 GTACTCTGAAAATGCTACTTTCAAAAG 57.613 33.333 0.97 0.97 41.10 2.27
174 175 8.349983 GGTACTCTGAAAATGCTACTTTCAAAA 58.650 33.333 8.91 2.31 41.10 2.44
175 176 7.307751 CGGTACTCTGAAAATGCTACTTTCAAA 60.308 37.037 8.91 0.00 41.10 2.69
176 177 6.147164 CGGTACTCTGAAAATGCTACTTTCAA 59.853 38.462 8.91 2.50 41.10 2.69
177 178 5.637810 CGGTACTCTGAAAATGCTACTTTCA 59.362 40.000 7.77 7.77 39.79 2.69
178 179 5.867716 TCGGTACTCTGAAAATGCTACTTTC 59.132 40.000 0.00 0.00 34.09 2.62
179 180 5.790593 TCGGTACTCTGAAAATGCTACTTT 58.209 37.500 0.00 0.00 0.00 2.66
180 181 5.401531 TCGGTACTCTGAAAATGCTACTT 57.598 39.130 0.00 0.00 0.00 2.24
181 182 5.599999 ATCGGTACTCTGAAAATGCTACT 57.400 39.130 0.00 0.00 32.29 2.57
182 183 6.663944 AAATCGGTACTCTGAAAATGCTAC 57.336 37.500 0.00 0.00 32.29 3.58
183 184 6.653320 ACAAAATCGGTACTCTGAAAATGCTA 59.347 34.615 0.00 0.00 32.29 3.49
184 185 5.473504 ACAAAATCGGTACTCTGAAAATGCT 59.526 36.000 0.00 0.00 32.29 3.79
185 186 5.699839 ACAAAATCGGTACTCTGAAAATGC 58.300 37.500 0.00 0.00 32.29 3.56
186 187 8.574196 AAAACAAAATCGGTACTCTGAAAATG 57.426 30.769 0.00 0.00 32.29 2.32
213 214 2.264005 TCTAGAAGGCGTGGCAAAAA 57.736 45.000 0.00 0.00 0.00 1.94
214 215 2.264005 TTCTAGAAGGCGTGGCAAAA 57.736 45.000 0.00 0.00 0.00 2.44
215 216 2.264005 TTTCTAGAAGGCGTGGCAAA 57.736 45.000 5.12 0.00 0.00 3.68
216 217 2.083774 CATTTCTAGAAGGCGTGGCAA 58.916 47.619 5.12 0.00 0.00 4.52
217 218 1.003118 ACATTTCTAGAAGGCGTGGCA 59.997 47.619 5.12 0.00 0.00 4.92
218 219 1.398390 CACATTTCTAGAAGGCGTGGC 59.602 52.381 17.07 0.00 0.00 5.01
219 220 2.972625 TCACATTTCTAGAAGGCGTGG 58.027 47.619 21.32 7.48 0.00 4.94
220 221 5.122239 TGAAATCACATTTCTAGAAGGCGTG 59.878 40.000 18.08 18.08 46.71 5.34
221 222 5.245531 TGAAATCACATTTCTAGAAGGCGT 58.754 37.500 5.12 1.78 46.71 5.68
222 223 5.801350 TGAAATCACATTTCTAGAAGGCG 57.199 39.130 5.12 1.16 46.71 5.52
223 224 7.192232 GTCATGAAATCACATTTCTAGAAGGC 58.808 38.462 5.12 0.00 46.71 4.35
224 225 7.278646 TCGTCATGAAATCACATTTCTAGAAGG 59.721 37.037 5.12 5.08 46.71 3.46
225 226 8.189709 TCGTCATGAAATCACATTTCTAGAAG 57.810 34.615 5.12 0.00 46.71 2.85
226 227 8.546597 TTCGTCATGAAATCACATTTCTAGAA 57.453 30.769 0.00 0.00 46.71 2.10
227 228 8.722480 ATTCGTCATGAAATCACATTTCTAGA 57.278 30.769 0.00 0.00 46.71 2.43
228 229 9.778993 AAATTCGTCATGAAATCACATTTCTAG 57.221 29.630 0.00 3.72 46.71 2.43
230 231 9.480053 AAAAATTCGTCATGAAATCACATTTCT 57.520 25.926 0.00 0.00 46.71 2.52
233 234 9.689976 TGTAAAAATTCGTCATGAAATCACATT 57.310 25.926 0.00 0.00 40.71 2.71
234 235 9.689976 TTGTAAAAATTCGTCATGAAATCACAT 57.310 25.926 0.00 0.00 40.71 3.21
235 236 9.179552 CTTGTAAAAATTCGTCATGAAATCACA 57.820 29.630 0.00 0.00 40.71 3.58
236 237 8.155923 GCTTGTAAAAATTCGTCATGAAATCAC 58.844 33.333 0.00 0.00 40.71 3.06
237 238 7.864882 TGCTTGTAAAAATTCGTCATGAAATCA 59.135 29.630 0.00 0.00 40.71 2.57
238 239 8.155923 GTGCTTGTAAAAATTCGTCATGAAATC 58.844 33.333 0.00 0.00 40.71 2.17
239 240 7.867403 AGTGCTTGTAAAAATTCGTCATGAAAT 59.133 29.630 0.00 0.00 40.71 2.17
240 241 7.199766 AGTGCTTGTAAAAATTCGTCATGAAA 58.800 30.769 0.00 0.00 40.71 2.69
241 242 6.734137 AGTGCTTGTAAAAATTCGTCATGAA 58.266 32.000 0.00 0.00 41.81 2.57
242 243 6.312399 AGTGCTTGTAAAAATTCGTCATGA 57.688 33.333 0.00 0.00 0.00 3.07
243 244 6.991485 AAGTGCTTGTAAAAATTCGTCATG 57.009 33.333 0.00 0.00 0.00 3.07
244 245 9.522804 TTTTAAGTGCTTGTAAAAATTCGTCAT 57.477 25.926 0.00 0.00 0.00 3.06
245 246 8.912787 TTTTAAGTGCTTGTAAAAATTCGTCA 57.087 26.923 0.00 0.00 0.00 4.35
257 258 8.998377 ACTTTGACAAAAATTTTAAGTGCTTGT 58.002 25.926 12.89 8.12 0.00 3.16
258 259 9.824534 AACTTTGACAAAAATTTTAAGTGCTTG 57.175 25.926 13.93 6.04 0.00 4.01
328 329 5.296283 TCGGGTGAACAGTAAAATCGAAAAA 59.704 36.000 0.00 0.00 0.00 1.94
329 330 4.815308 TCGGGTGAACAGTAAAATCGAAAA 59.185 37.500 0.00 0.00 0.00 2.29
330 331 4.378774 TCGGGTGAACAGTAAAATCGAAA 58.621 39.130 0.00 0.00 0.00 3.46
331 332 3.991773 CTCGGGTGAACAGTAAAATCGAA 59.008 43.478 0.00 0.00 0.00 3.71
332 333 3.581755 CTCGGGTGAACAGTAAAATCGA 58.418 45.455 0.00 0.00 0.00 3.59
333 334 2.093783 GCTCGGGTGAACAGTAAAATCG 59.906 50.000 0.00 0.00 0.00 3.34
334 335 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
335 336 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
336 337 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
337 338 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
338 339 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
339 340 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
340 341 1.557099 TATGAGCTCGGGTGAACAGT 58.443 50.000 9.64 0.00 0.00 3.55
341 342 2.101415 TCATATGAGCTCGGGTGAACAG 59.899 50.000 9.64 0.00 0.00 3.16
342 343 2.101415 CTCATATGAGCTCGGGTGAACA 59.899 50.000 19.47 0.00 35.13 3.18
343 344 2.748605 CTCATATGAGCTCGGGTGAAC 58.251 52.381 19.47 0.00 35.13 3.18
354 355 0.390492 TGCACCCGAGCTCATATGAG 59.610 55.000 25.64 25.64 44.75 2.90
355 356 0.390492 CTGCACCCGAGCTCATATGA 59.610 55.000 15.40 5.07 34.99 2.15
356 357 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
357 358 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
358 359 0.901827 TTTCTGCACCCGAGCTCATA 59.098 50.000 15.40 0.00 34.99 2.15
359 360 0.674895 GTTTCTGCACCCGAGCTCAT 60.675 55.000 15.40 0.00 34.99 2.90
360 361 1.301716 GTTTCTGCACCCGAGCTCA 60.302 57.895 15.40 0.00 34.99 4.26
361 362 1.004440 AGTTTCTGCACCCGAGCTC 60.004 57.895 2.73 2.73 34.99 4.09
362 363 1.004440 GAGTTTCTGCACCCGAGCT 60.004 57.895 0.00 0.00 34.99 4.09
363 364 2.035442 GGAGTTTCTGCACCCGAGC 61.035 63.158 0.00 0.00 0.00 5.03
364 365 0.951040 GTGGAGTTTCTGCACCCGAG 60.951 60.000 9.63 0.00 44.99 4.63
365 366 1.070786 GTGGAGTTTCTGCACCCGA 59.929 57.895 9.63 0.00 44.99 5.14
366 367 3.655481 GTGGAGTTTCTGCACCCG 58.345 61.111 9.63 0.00 44.99 5.28
369 370 1.228657 GGGACGTGGAGTTTCTGCAC 61.229 60.000 10.52 10.52 46.73 4.57
370 371 1.070786 GGGACGTGGAGTTTCTGCA 59.929 57.895 0.00 0.00 0.00 4.41
371 372 0.606604 TAGGGACGTGGAGTTTCTGC 59.393 55.000 0.00 0.00 0.00 4.26
372 373 3.611766 ATTAGGGACGTGGAGTTTCTG 57.388 47.619 0.00 0.00 0.00 3.02
373 374 4.091549 TGTATTAGGGACGTGGAGTTTCT 58.908 43.478 0.00 0.00 0.00 2.52
374 375 4.460948 TGTATTAGGGACGTGGAGTTTC 57.539 45.455 0.00 0.00 0.00 2.78
375 376 4.895668 TTGTATTAGGGACGTGGAGTTT 57.104 40.909 0.00 0.00 0.00 2.66
376 377 4.468510 TGATTGTATTAGGGACGTGGAGTT 59.531 41.667 0.00 0.00 0.00 3.01
377 378 4.028131 TGATTGTATTAGGGACGTGGAGT 58.972 43.478 0.00 0.00 0.00 3.85
378 379 4.665833 TGATTGTATTAGGGACGTGGAG 57.334 45.455 0.00 0.00 0.00 3.86
379 380 5.423704 TTTGATTGTATTAGGGACGTGGA 57.576 39.130 0.00 0.00 0.00 4.02
380 381 6.693315 AATTTGATTGTATTAGGGACGTGG 57.307 37.500 0.00 0.00 0.00 4.94
381 382 8.980143 AAAAATTTGATTGTATTAGGGACGTG 57.020 30.769 0.00 0.00 0.00 4.49
383 384 9.730420 CCTAAAAATTTGATTGTATTAGGGACG 57.270 33.333 12.08 0.00 34.07 4.79
417 418 3.673543 AACACACTGTCCCCCTAAAAA 57.326 42.857 0.00 0.00 0.00 1.94
418 419 3.673543 AAACACACTGTCCCCCTAAAA 57.326 42.857 0.00 0.00 0.00 1.52
419 420 3.673543 AAAACACACTGTCCCCCTAAA 57.326 42.857 0.00 0.00 0.00 1.85
420 421 3.053544 TGAAAAACACACTGTCCCCCTAA 60.054 43.478 0.00 0.00 0.00 2.69
421 422 2.510382 TGAAAAACACACTGTCCCCCTA 59.490 45.455 0.00 0.00 0.00 3.53
422 423 1.286553 TGAAAAACACACTGTCCCCCT 59.713 47.619 0.00 0.00 0.00 4.79
423 424 1.770294 TGAAAAACACACTGTCCCCC 58.230 50.000 0.00 0.00 0.00 5.40
424 425 2.955660 TCATGAAAAACACACTGTCCCC 59.044 45.455 0.00 0.00 0.00 4.81
425 426 4.647424 TTCATGAAAAACACACTGTCCC 57.353 40.909 5.45 0.00 0.00 4.46
426 427 6.857964 CACTATTCATGAAAAACACACTGTCC 59.142 38.462 13.09 0.00 0.00 4.02
427 428 7.376866 CACACTATTCATGAAAAACACACTGTC 59.623 37.037 13.09 0.00 0.00 3.51
428 429 7.148086 ACACACTATTCATGAAAAACACACTGT 60.148 33.333 13.09 4.23 0.00 3.55
429 430 7.166307 CACACACTATTCATGAAAAACACACTG 59.834 37.037 13.09 3.64 0.00 3.66
430 431 7.066887 TCACACACTATTCATGAAAAACACACT 59.933 33.333 13.09 0.00 0.00 3.55
431 432 7.192913 TCACACACTATTCATGAAAAACACAC 58.807 34.615 13.09 0.00 0.00 3.82
432 433 7.066887 ACTCACACACTATTCATGAAAAACACA 59.933 33.333 13.09 0.00 0.00 3.72
433 434 7.376866 CACTCACACACTATTCATGAAAAACAC 59.623 37.037 13.09 0.00 0.00 3.32
434 435 7.416817 CACTCACACACTATTCATGAAAAACA 58.583 34.615 13.09 0.00 0.00 2.83
435 436 6.857964 CCACTCACACACTATTCATGAAAAAC 59.142 38.462 13.09 0.00 0.00 2.43
436 437 6.545666 ACCACTCACACACTATTCATGAAAAA 59.454 34.615 13.09 2.94 0.00 1.94
437 438 6.061441 ACCACTCACACACTATTCATGAAAA 58.939 36.000 13.09 0.00 0.00 2.29
438 439 5.620206 ACCACTCACACACTATTCATGAAA 58.380 37.500 13.09 1.39 0.00 2.69
439 440 5.227569 ACCACTCACACACTATTCATGAA 57.772 39.130 11.26 11.26 0.00 2.57
440 441 4.890158 ACCACTCACACACTATTCATGA 57.110 40.909 0.00 0.00 0.00 3.07
441 442 8.893219 ATATAACCACTCACACACTATTCATG 57.107 34.615 0.00 0.00 0.00 3.07
442 443 9.547753 GAATATAACCACTCACACACTATTCAT 57.452 33.333 0.00 0.00 0.00 2.57
443 444 8.758829 AGAATATAACCACTCACACACTATTCA 58.241 33.333 0.00 0.00 0.00 2.57
444 445 9.601217 AAGAATATAACCACTCACACACTATTC 57.399 33.333 0.00 0.00 0.00 1.75
445 446 9.383519 CAAGAATATAACCACTCACACACTATT 57.616 33.333 0.00 0.00 0.00 1.73
446 447 8.540388 ACAAGAATATAACCACTCACACACTAT 58.460 33.333 0.00 0.00 0.00 2.12
447 448 7.903145 ACAAGAATATAACCACTCACACACTA 58.097 34.615 0.00 0.00 0.00 2.74
448 449 6.769512 ACAAGAATATAACCACTCACACACT 58.230 36.000 0.00 0.00 0.00 3.55
449 450 7.298122 CAACAAGAATATAACCACTCACACAC 58.702 38.462 0.00 0.00 0.00 3.82
450 451 6.072728 GCAACAAGAATATAACCACTCACACA 60.073 38.462 0.00 0.00 0.00 3.72
451 452 6.072728 TGCAACAAGAATATAACCACTCACAC 60.073 38.462 0.00 0.00 0.00 3.82
452 453 6.000840 TGCAACAAGAATATAACCACTCACA 58.999 36.000 0.00 0.00 0.00 3.58
453 454 6.494893 TGCAACAAGAATATAACCACTCAC 57.505 37.500 0.00 0.00 0.00 3.51
454 455 7.701539 AATGCAACAAGAATATAACCACTCA 57.298 32.000 0.00 0.00 0.00 3.41
455 456 8.028938 ACAAATGCAACAAGAATATAACCACTC 58.971 33.333 0.00 0.00 0.00 3.51
456 457 7.895759 ACAAATGCAACAAGAATATAACCACT 58.104 30.769 0.00 0.00 0.00 4.00
457 458 9.801873 ATACAAATGCAACAAGAATATAACCAC 57.198 29.630 0.00 0.00 0.00 4.16
464 465 9.851686 AGGATAGATACAAATGCAACAAGAATA 57.148 29.630 0.00 0.00 0.00 1.75
465 466 8.627403 CAGGATAGATACAAATGCAACAAGAAT 58.373 33.333 0.00 0.00 0.00 2.40
466 467 7.415541 GCAGGATAGATACAAATGCAACAAGAA 60.416 37.037 0.00 0.00 32.58 2.52
467 468 6.038603 GCAGGATAGATACAAATGCAACAAGA 59.961 38.462 0.00 0.00 32.58 3.02
468 469 6.183360 TGCAGGATAGATACAAATGCAACAAG 60.183 38.462 0.00 0.00 39.08 3.16
469 470 5.651576 TGCAGGATAGATACAAATGCAACAA 59.348 36.000 0.00 0.00 39.08 2.83
470 471 5.066375 GTGCAGGATAGATACAAATGCAACA 59.934 40.000 0.00 0.00 43.11 3.33
471 472 5.066375 TGTGCAGGATAGATACAAATGCAAC 59.934 40.000 0.00 0.00 43.11 4.17
472 473 5.192176 TGTGCAGGATAGATACAAATGCAA 58.808 37.500 0.00 0.00 43.11 4.08
473 474 4.779696 TGTGCAGGATAGATACAAATGCA 58.220 39.130 0.00 0.00 39.67 3.96
474 475 5.240183 ACATGTGCAGGATAGATACAAATGC 59.760 40.000 0.00 0.00 30.56 3.56
475 476 6.872628 ACATGTGCAGGATAGATACAAATG 57.127 37.500 0.00 0.00 33.15 2.32
476 477 6.203530 CGAACATGTGCAGGATAGATACAAAT 59.796 38.462 4.29 0.00 0.00 2.32
477 478 5.523552 CGAACATGTGCAGGATAGATACAAA 59.476 40.000 4.29 0.00 0.00 2.83
478 479 5.049828 CGAACATGTGCAGGATAGATACAA 58.950 41.667 4.29 0.00 0.00 2.41
479 480 4.099419 ACGAACATGTGCAGGATAGATACA 59.901 41.667 4.29 0.00 0.00 2.29
480 481 4.621991 ACGAACATGTGCAGGATAGATAC 58.378 43.478 4.29 0.00 0.00 2.24
481 482 4.584743 AGACGAACATGTGCAGGATAGATA 59.415 41.667 4.29 0.00 0.00 1.98
482 483 3.386078 AGACGAACATGTGCAGGATAGAT 59.614 43.478 4.29 0.00 0.00 1.98
483 484 2.760650 AGACGAACATGTGCAGGATAGA 59.239 45.455 4.29 0.00 0.00 1.98
484 485 3.119291 GAGACGAACATGTGCAGGATAG 58.881 50.000 4.29 0.00 0.00 2.08
485 486 2.760650 AGAGACGAACATGTGCAGGATA 59.239 45.455 4.29 0.00 0.00 2.59
486 487 1.552337 AGAGACGAACATGTGCAGGAT 59.448 47.619 4.29 0.00 0.00 3.24
487 488 0.969149 AGAGACGAACATGTGCAGGA 59.031 50.000 4.29 0.00 0.00 3.86
488 489 1.073964 CAGAGACGAACATGTGCAGG 58.926 55.000 4.29 0.00 0.00 4.85
489 490 1.073964 CCAGAGACGAACATGTGCAG 58.926 55.000 4.29 0.00 0.00 4.41
490 491 0.950555 GCCAGAGACGAACATGTGCA 60.951 55.000 4.29 0.00 0.00 4.57
491 492 1.639298 GGCCAGAGACGAACATGTGC 61.639 60.000 0.00 0.00 0.00 4.57
492 493 1.021390 GGGCCAGAGACGAACATGTG 61.021 60.000 4.39 0.00 0.00 3.21
493 494 1.296715 GGGCCAGAGACGAACATGT 59.703 57.895 4.39 0.00 0.00 3.21
494 495 1.811266 CGGGCCAGAGACGAACATG 60.811 63.158 4.39 0.00 0.00 3.21
495 496 2.579201 CGGGCCAGAGACGAACAT 59.421 61.111 4.39 0.00 0.00 2.71
496 497 4.373116 GCGGGCCAGAGACGAACA 62.373 66.667 7.23 0.00 0.00 3.18
509 510 4.424711 TTAGGCTGCCTTGGCGGG 62.425 66.667 28.55 10.62 34.61 6.13
510 511 3.134127 GTTAGGCTGCCTTGGCGG 61.134 66.667 28.55 15.65 34.61 6.13
511 512 2.359850 TGTTAGGCTGCCTTGGCG 60.360 61.111 28.55 3.44 34.61 5.69
512 513 1.303643 ACTGTTAGGCTGCCTTGGC 60.304 57.895 28.55 16.94 34.61 4.52
513 514 0.036732 TGACTGTTAGGCTGCCTTGG 59.963 55.000 28.55 15.96 34.61 3.61
514 515 1.446907 CTGACTGTTAGGCTGCCTTG 58.553 55.000 28.55 16.38 34.61 3.61
515 516 0.326264 CCTGACTGTTAGGCTGCCTT 59.674 55.000 28.55 8.25 34.61 4.35
516 517 0.838122 ACCTGACTGTTAGGCTGCCT 60.838 55.000 26.52 26.52 38.96 4.75
517 518 0.391793 GACCTGACTGTTAGGCTGCC 60.392 60.000 17.67 11.65 38.96 4.85
518 519 0.321671 TGACCTGACTGTTAGGCTGC 59.678 55.000 17.67 8.73 38.96 5.25
519 520 1.620819 ACTGACCTGACTGTTAGGCTG 59.379 52.381 17.67 15.23 38.96 4.85
520 521 2.016905 ACTGACCTGACTGTTAGGCT 57.983 50.000 17.67 6.05 38.96 4.58
521 522 3.090037 TCTACTGACCTGACTGTTAGGC 58.910 50.000 17.67 11.27 38.96 3.93
522 523 5.336849 CCTTTCTACTGACCTGACTGTTAGG 60.337 48.000 16.33 16.33 41.22 2.69
523 524 5.715070 CCTTTCTACTGACCTGACTGTTAG 58.285 45.833 0.00 0.00 0.00 2.34
524 525 4.021368 GCCTTTCTACTGACCTGACTGTTA 60.021 45.833 0.00 0.00 0.00 2.41
525 526 3.244249 GCCTTTCTACTGACCTGACTGTT 60.244 47.826 0.00 0.00 0.00 3.16
526 527 2.300437 GCCTTTCTACTGACCTGACTGT 59.700 50.000 0.00 0.00 0.00 3.55
527 528 2.564947 AGCCTTTCTACTGACCTGACTG 59.435 50.000 0.00 0.00 0.00 3.51
528 529 2.564947 CAGCCTTTCTACTGACCTGACT 59.435 50.000 0.00 0.00 35.90 3.41
529 530 2.563179 TCAGCCTTTCTACTGACCTGAC 59.437 50.000 0.00 0.00 37.99 3.51
530 531 2.889512 TCAGCCTTTCTACTGACCTGA 58.110 47.619 0.00 0.00 37.99 3.86
535 536 1.276622 GGGGTCAGCCTTTCTACTGA 58.723 55.000 0.00 0.00 40.54 3.41
536 537 0.253327 GGGGGTCAGCCTTTCTACTG 59.747 60.000 0.00 0.00 35.15 2.74
537 538 2.698168 GGGGGTCAGCCTTTCTACT 58.302 57.895 0.00 0.00 34.45 2.57
553 554 5.592688 ACGAGTATCATAAAAATGTTGGGGG 59.407 40.000 0.00 0.00 33.17 5.40
554 555 6.317642 TCACGAGTATCATAAAAATGTTGGGG 59.682 38.462 0.00 0.00 33.17 4.96
555 556 7.315247 TCACGAGTATCATAAAAATGTTGGG 57.685 36.000 0.00 0.00 33.17 4.12
556 557 8.611757 TGATCACGAGTATCATAAAAATGTTGG 58.388 33.333 0.00 0.00 33.17 3.77
567 568 8.278408 CGATTCAAAAATGATCACGAGTATCAT 58.722 33.333 0.00 0.00 44.13 2.45
568 569 7.254421 CCGATTCAAAAATGATCACGAGTATCA 60.254 37.037 0.00 0.00 37.73 2.15
569 570 7.042725 TCCGATTCAAAAATGATCACGAGTATC 60.043 37.037 0.00 0.00 0.00 2.24
570 571 6.761242 TCCGATTCAAAAATGATCACGAGTAT 59.239 34.615 0.00 0.00 0.00 2.12
571 572 6.103330 TCCGATTCAAAAATGATCACGAGTA 58.897 36.000 0.00 0.00 0.00 2.59
572 573 4.935205 TCCGATTCAAAAATGATCACGAGT 59.065 37.500 0.00 0.00 0.00 4.18
573 574 5.291858 TCTCCGATTCAAAAATGATCACGAG 59.708 40.000 0.00 0.00 0.00 4.18
574 575 5.175127 TCTCCGATTCAAAAATGATCACGA 58.825 37.500 0.00 0.00 0.00 4.35
575 576 5.469373 TCTCCGATTCAAAAATGATCACG 57.531 39.130 0.00 0.00 0.00 4.35
576 577 6.611381 TGTTCTCCGATTCAAAAATGATCAC 58.389 36.000 0.00 0.00 0.00 3.06
577 578 6.816134 TGTTCTCCGATTCAAAAATGATCA 57.184 33.333 0.00 0.00 0.00 2.92
578 579 8.693542 AAATGTTCTCCGATTCAAAAATGATC 57.306 30.769 0.00 0.00 0.00 2.92
579 580 9.492973 AAAAATGTTCTCCGATTCAAAAATGAT 57.507 25.926 0.00 0.00 0.00 2.45
580 581 8.885494 AAAAATGTTCTCCGATTCAAAAATGA 57.115 26.923 0.00 0.00 0.00 2.57
609 610 6.099557 TGAATTTCAAAATCTGTTCCCAGGTT 59.900 34.615 0.00 0.00 43.99 3.50
610 611 5.602145 TGAATTTCAAAATCTGTTCCCAGGT 59.398 36.000 0.00 0.00 39.31 4.00
611 612 6.100404 TGAATTTCAAAATCTGTTCCCAGG 57.900 37.500 0.00 0.00 39.31 4.45
612 613 9.709495 TTTATGAATTTCAAAATCTGTTCCCAG 57.291 29.630 2.68 0.00 40.25 4.45
681 682 7.706281 TCAAAAATATTCGCTGCTTCAAAAA 57.294 28.000 0.00 0.00 0.00 1.94
682 683 7.706281 TTCAAAAATATTCGCTGCTTCAAAA 57.294 28.000 0.00 0.00 0.00 2.44
683 684 7.201342 CGATTCAAAAATATTCGCTGCTTCAAA 60.201 33.333 0.00 0.00 0.00 2.69
684 685 6.251163 CGATTCAAAAATATTCGCTGCTTCAA 59.749 34.615 0.00 0.00 0.00 2.69
685 686 5.738693 CGATTCAAAAATATTCGCTGCTTCA 59.261 36.000 0.00 0.00 0.00 3.02
686 687 5.965334 TCGATTCAAAAATATTCGCTGCTTC 59.035 36.000 0.00 0.00 0.00 3.86
687 688 5.879237 TCGATTCAAAAATATTCGCTGCTT 58.121 33.333 0.00 0.00 0.00 3.91
688 689 5.484173 TCGATTCAAAAATATTCGCTGCT 57.516 34.783 0.00 0.00 0.00 4.24
689 690 5.909054 TCATCGATTCAAAAATATTCGCTGC 59.091 36.000 0.00 0.00 0.00 5.25
690 691 7.588854 ACATCATCGATTCAAAAATATTCGCTG 59.411 33.333 0.00 0.00 0.00 5.18
691 692 7.642669 ACATCATCGATTCAAAAATATTCGCT 58.357 30.769 0.00 0.00 0.00 4.93
692 693 7.842525 ACATCATCGATTCAAAAATATTCGC 57.157 32.000 0.00 0.00 0.00 4.70
721 722 9.823098 CGCAAAAATAATTGATTCCAAATTTCA 57.177 25.926 0.00 0.00 35.67 2.69
724 725 9.824534 GTTCGCAAAAATAATTGATTCCAAATT 57.175 25.926 0.00 0.00 35.67 1.82
725 726 8.997323 TGTTCGCAAAAATAATTGATTCCAAAT 58.003 25.926 0.00 0.00 35.67 2.32
726 727 8.370493 TGTTCGCAAAAATAATTGATTCCAAA 57.630 26.923 0.00 0.00 35.67 3.28
727 728 7.953158 TGTTCGCAAAAATAATTGATTCCAA 57.047 28.000 0.00 0.00 36.61 3.53
728 729 8.545229 AATGTTCGCAAAAATAATTGATTCCA 57.455 26.923 0.00 0.00 31.84 3.53
729 730 9.824534 AAAATGTTCGCAAAAATAATTGATTCC 57.175 25.926 0.00 0.00 31.84 3.01
902 903 1.315690 GGTGATCATGTCATGGCCTG 58.684 55.000 12.90 0.00 39.48 4.85
912 913 1.696063 GGAATGGGTGGGTGATCATG 58.304 55.000 0.00 0.00 0.00 3.07
913 914 0.557729 GGGAATGGGTGGGTGATCAT 59.442 55.000 0.00 0.00 0.00 2.45
914 915 0.848648 TGGGAATGGGTGGGTGATCA 60.849 55.000 0.00 0.00 0.00 2.92
915 916 0.395724 GTGGGAATGGGTGGGTGATC 60.396 60.000 0.00 0.00 0.00 2.92
916 917 1.697297 GTGGGAATGGGTGGGTGAT 59.303 57.895 0.00 0.00 0.00 3.06
917 918 2.901281 CGTGGGAATGGGTGGGTGA 61.901 63.158 0.00 0.00 0.00 4.02
918 919 2.361104 CGTGGGAATGGGTGGGTG 60.361 66.667 0.00 0.00 0.00 4.61
919 920 2.530661 TCGTGGGAATGGGTGGGT 60.531 61.111 0.00 0.00 0.00 4.51
920 921 2.272146 CTCGTGGGAATGGGTGGG 59.728 66.667 0.00 0.00 0.00 4.61
921 922 2.438434 GCTCGTGGGAATGGGTGG 60.438 66.667 0.00 0.00 0.00 4.61
922 923 0.893270 TTTGCTCGTGGGAATGGGTG 60.893 55.000 0.00 0.00 0.00 4.61
923 924 0.178975 TTTTGCTCGTGGGAATGGGT 60.179 50.000 0.00 0.00 0.00 4.51
924 925 0.243636 GTTTTGCTCGTGGGAATGGG 59.756 55.000 0.00 0.00 0.00 4.00
925 926 0.243636 GGTTTTGCTCGTGGGAATGG 59.756 55.000 0.00 0.00 0.00 3.16
926 927 0.958091 TGGTTTTGCTCGTGGGAATG 59.042 50.000 0.00 0.00 0.00 2.67
927 928 1.698506 TTGGTTTTGCTCGTGGGAAT 58.301 45.000 0.00 0.00 0.00 3.01
956 957 4.202131 GGAGAGGTATTATATAGGTGCCGC 60.202 50.000 1.86 1.86 0.00 6.53
1036 1059 4.393834 GGGTTTGCTCTTCTTCTTCTTCT 58.606 43.478 0.00 0.00 0.00 2.85
3806 4985 3.774702 GGAAGAACGTCGTGCGCC 61.775 66.667 4.18 0.00 46.11 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.