Multiple sequence alignment - TraesCS3B01G009400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G009400 chr3B 100.000 1935 0 0 1 1935 4491736 4489802 0.000000e+00 3574.0
1 TraesCS3B01G009400 chr3B 100.000 237 0 0 2166 2402 4489571 4489335 2.830000e-119 438.0
2 TraesCS3B01G009400 chr3B 73.228 1143 207 64 746 1835 4434350 4433254 8.280000e-85 324.0
3 TraesCS3B01G009400 chr3B 76.119 603 103 22 829 1412 4469446 4468866 6.540000e-71 278.0
4 TraesCS3B01G009400 chr3B 75.458 546 107 19 865 1395 4459553 4459020 8.580000e-60 241.0
5 TraesCS3B01G009400 chr3B 75.870 460 93 11 967 1412 4421659 4421204 4.020000e-53 219.0
6 TraesCS3B01G009400 chr3D 86.806 955 101 10 693 1638 2266814 2265876 0.000000e+00 1042.0
7 TraesCS3B01G009400 chr3D 82.385 738 107 17 693 1415 2272666 2271937 2.620000e-174 621.0
8 TraesCS3B01G009400 chr3D 91.205 307 25 1 1629 1935 2262046 2261742 1.330000e-112 416.0
9 TraesCS3B01G009400 chr3D 73.297 1116 208 54 769 1835 2243575 2242501 6.400000e-86 327.0
10 TraesCS3B01G009400 chr3D 89.354 263 20 6 436 693 2267996 2267737 8.280000e-85 324.0
11 TraesCS3B01G009400 chr3D 88.261 230 15 3 1 219 2274079 2273851 5.090000e-67 265.0
12 TraesCS3B01G009400 chr3D 72.709 1015 179 59 865 1832 2256769 2255806 1.430000e-62 250.0
13 TraesCS3B01G009400 chr3D 76.139 461 90 12 967 1412 2239543 2239088 8.640000e-55 224.0
14 TraesCS3B01G009400 chr3D 74.857 350 60 16 1497 1832 2239019 2238684 1.500000e-27 134.0
15 TraesCS3B01G009400 chr3D 100.000 34 0 0 432 465 2259686 2259653 1.990000e-06 63.9
16 TraesCS3B01G009400 chr3A 90.852 481 39 5 957 1434 1774044 1774522 7.240000e-180 640.0
17 TraesCS3B01G009400 chr3A 82.388 670 96 12 756 1412 1769358 1770018 4.480000e-157 564.0
18 TraesCS3B01G009400 chr3A 85.714 441 41 14 293 728 1773396 1773819 1.690000e-121 446.0
19 TraesCS3B01G009400 chr3A 86.957 230 18 4 1 218 1768483 1768712 5.130000e-62 248.0
20 TraesCS3B01G009400 chr3A 72.687 897 181 41 981 1832 1789568 1790445 8.580000e-60 241.0
21 TraesCS3B01G009400 chr3A 74.957 579 113 17 840 1405 1851829 1852388 1.110000e-58 237.0
22 TraesCS3B01G009400 chr3A 76.139 461 90 12 967 1412 1797397 1797852 8.640000e-55 224.0
23 TraesCS3B01G009400 chr3A 72.565 842 167 41 865 1677 1780276 1781082 1.450000e-52 217.0
24 TraesCS3B01G009400 chr3A 75.265 283 39 17 1483 1752 1797911 1798175 3.270000e-19 106.0
25 TraesCS3B01G009400 chr3A 91.026 78 4 3 301 375 1768809 1768886 4.220000e-18 102.0
26 TraesCS3B01G009400 chr3A 97.436 39 1 0 429 467 1775240 1775278 1.540000e-07 67.6
27 TraesCS3B01G009400 chr3A 81.944 72 13 0 1700 1771 1792170 1792241 7.170000e-06 62.1
28 TraesCS3B01G009400 chr7D 88.350 103 10 2 2297 2398 3891405 3891304 3.240000e-24 122.0
29 TraesCS3B01G009400 chr7D 95.122 41 2 0 2295 2335 629775793 629775833 5.540000e-07 65.8
30 TraesCS3B01G009400 chr2B 100.000 38 0 0 2298 2335 14515996 14515959 1.190000e-08 71.3
31 TraesCS3B01G009400 chr4D 93.617 47 1 2 2287 2331 145530299 145530345 4.280000e-08 69.4
32 TraesCS3B01G009400 chr7A 91.837 49 3 1 2293 2341 198719772 198719725 1.540000e-07 67.6
33 TraesCS3B01G009400 chr4A 91.667 48 3 1 2293 2339 650678206 650678159 5.540000e-07 65.8
34 TraesCS3B01G009400 chr2D 97.368 38 1 0 2298 2335 534134315 534134278 5.540000e-07 65.8
35 TraesCS3B01G009400 chr6D 92.857 42 3 0 2289 2330 78538261 78538302 7.170000e-06 62.1
36 TraesCS3B01G009400 chr1B 94.872 39 2 0 2293 2331 633042396 633042434 7.170000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G009400 chr3B 4489335 4491736 2401 True 2006.000000 3574 100.000000 1 2402 2 chr3B.!!$R5 2401
1 TraesCS3B01G009400 chr3B 4433254 4434350 1096 True 324.000000 324 73.228000 746 1835 1 chr3B.!!$R2 1089
2 TraesCS3B01G009400 chr3B 4468866 4469446 580 True 278.000000 278 76.119000 829 1412 1 chr3B.!!$R4 583
3 TraesCS3B01G009400 chr3B 4459020 4459553 533 True 241.000000 241 75.458000 865 1395 1 chr3B.!!$R3 530
4 TraesCS3B01G009400 chr3D 2255806 2274079 18273 True 425.985714 1042 87.245714 1 1935 7 chr3D.!!$R2 1934
5 TraesCS3B01G009400 chr3D 2238684 2243575 4891 True 228.333333 327 74.764333 769 1835 3 chr3D.!!$R1 1066
6 TraesCS3B01G009400 chr3A 1768483 1775278 6795 False 344.600000 640 89.062167 1 1434 6 chr3A.!!$F3 1433
7 TraesCS3B01G009400 chr3A 1851829 1852388 559 False 237.000000 237 74.957000 840 1405 1 chr3A.!!$F2 565
8 TraesCS3B01G009400 chr3A 1780276 1781082 806 False 217.000000 217 72.565000 865 1677 1 chr3A.!!$F1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.252103 GGATAGCCTACCGGGGATCA 60.252 60.0 6.32 0.0 35.12 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 23907 0.310543 GAATGTCGGCACAAGCACAA 59.689 50.0 0.0 0.0 44.61 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.306296 GGCCCCTGCTACCATTCAA 59.694 57.895 0.00 0.00 37.74 2.69
61 62 0.734889 CAACCCAAATCGCCTAGCTG 59.265 55.000 0.00 0.00 0.00 4.24
78 79 2.382023 CTGGGATAGCCTACCGGGGA 62.382 65.000 6.32 0.00 35.12 4.81
79 80 1.080538 GGGATAGCCTACCGGGGAT 59.919 63.158 6.32 0.00 35.12 3.85
80 81 0.976590 GGGATAGCCTACCGGGGATC 60.977 65.000 6.32 0.00 35.12 3.36
81 82 0.252103 GGATAGCCTACCGGGGATCA 60.252 60.000 6.32 0.00 35.12 2.92
151 164 3.852578 AGGCTTTTTCAAGGAGGAGGATA 59.147 43.478 0.00 0.00 0.00 2.59
190 203 5.548406 AGTTTGCCGTATGAACTAAAGTCT 58.452 37.500 0.00 0.00 32.22 3.24
204 217 5.555017 ACTAAAGTCTGTTCATGCATCTGT 58.445 37.500 0.00 0.00 0.00 3.41
276 354 1.070914 GTTCCTCCATCCCGATTCTCC 59.929 57.143 0.00 0.00 0.00 3.71
288 366 2.389059 CGATTCTCCTCTACACATGCG 58.611 52.381 0.00 0.00 0.00 4.73
289 367 2.223595 CGATTCTCCTCTACACATGCGT 60.224 50.000 0.00 0.00 0.00 5.24
303 5944 2.068519 CATGCGTGTTGTGCTAGAGAA 58.931 47.619 0.00 0.00 0.00 2.87
310 5951 4.569943 GTGTTGTGCTAGAGAAGATCCAA 58.430 43.478 0.00 0.00 0.00 3.53
317 5958 6.372659 TGTGCTAGAGAAGATCCAATCAAAAC 59.627 38.462 0.00 0.00 0.00 2.43
322 5963 9.393512 CTAGAGAAGATCCAATCAAAACTCAAT 57.606 33.333 0.00 0.00 0.00 2.57
333 5974 4.214310 TCAAAACTCAATTCCTCTTGCCA 58.786 39.130 0.00 0.00 0.00 4.92
334 5975 4.648762 TCAAAACTCAATTCCTCTTGCCAA 59.351 37.500 0.00 0.00 0.00 4.52
338 5979 5.813513 ACTCAATTCCTCTTGCCAAAAAT 57.186 34.783 0.00 0.00 0.00 1.82
344 5986 9.820725 TCAATTCCTCTTGCCAAAAATAATATG 57.179 29.630 0.00 0.00 0.00 1.78
353 5995 8.613060 TTGCCAAAAATAATATGCAAAGTCAA 57.387 26.923 0.00 0.00 35.94 3.18
356 5998 9.493206 GCCAAAAATAATATGCAAAGTCAATTG 57.507 29.630 0.00 0.00 0.00 2.32
399 6041 5.633601 GGTGCCATTTACTAAAAGCAAGTTC 59.366 40.000 9.88 1.40 36.09 3.01
434 6076 6.492007 AAATTGAGTATGATCATGATCCGC 57.508 37.500 28.61 19.11 37.02 5.54
471 6412 3.185594 TCAAAGTCAATGCTTCGTAACCG 59.814 43.478 0.00 0.00 0.00 4.44
474 6415 0.609151 TCAATGCTTCGTAACCGGGA 59.391 50.000 6.32 0.00 33.95 5.14
476 6417 1.807742 CAATGCTTCGTAACCGGGAAA 59.192 47.619 6.32 0.00 33.95 3.13
477 6418 2.413310 ATGCTTCGTAACCGGGAAAT 57.587 45.000 6.32 0.00 33.95 2.17
532 6474 1.117150 TGAGCAGTAATCCGGGGTAC 58.883 55.000 0.00 4.33 0.00 3.34
534 6476 1.340568 GAGCAGTAATCCGGGGTACTC 59.659 57.143 13.25 9.51 0.00 2.59
545 6489 3.054948 TCCGGGGTACTCCAAAATTGTAG 60.055 47.826 13.51 0.00 37.22 2.74
550 6494 6.824704 CGGGGTACTCCAAAATTGTAGATTTA 59.175 38.462 13.51 0.00 37.22 1.40
566 6510 8.630278 TGTAGATTTAGTTTATCGTCAAGCTC 57.370 34.615 0.00 0.00 0.00 4.09
578 6522 2.031769 CGTCAAGCTCAATTGTCAAGCA 60.032 45.455 17.12 0.00 38.51 3.91
623 6569 8.791327 TCTTGAGCATTCAACTGATTGTTATA 57.209 30.769 4.13 0.00 38.37 0.98
625 6571 8.791327 TTGAGCATTCAACTGATTGTTATAGA 57.209 30.769 4.13 0.00 38.37 1.98
631 6577 9.764870 CATTCAACTGATTGTTATAGAACTGTG 57.235 33.333 1.39 0.00 37.07 3.66
636 6582 7.671302 ACTGATTGTTATAGAACTGTGTGTCT 58.329 34.615 1.39 0.00 36.45 3.41
664 6610 6.926630 AAAGGGTGTTATCAAGCCATTTTA 57.073 33.333 0.00 0.00 37.67 1.52
669 6615 6.915843 GGGTGTTATCAAGCCATTTTAATACG 59.084 38.462 0.00 0.00 35.21 3.06
671 6617 8.349983 GGTGTTATCAAGCCATTTTAATACGAT 58.650 33.333 0.00 0.00 0.00 3.73
687 6633 9.849166 TTTAATACGATTTCCTTTGATTCCAAC 57.151 29.630 0.00 0.00 30.88 3.77
696 7565 4.821805 TCCTTTGATTCCAACTGTCTGTTC 59.178 41.667 0.00 0.00 36.63 3.18
699 7568 6.405731 CCTTTGATTCCAACTGTCTGTTCAAA 60.406 38.462 6.53 6.53 36.63 2.69
702 7571 4.349663 TTCCAACTGTCTGTTCAAAACG 57.650 40.909 0.00 0.00 36.63 3.60
705 7574 3.425404 CAACTGTCTGTTCAAAACGTGG 58.575 45.455 0.00 0.00 36.63 4.94
712 7581 2.028130 TGTTCAAAACGTGGAGGCAAT 58.972 42.857 0.00 0.00 0.00 3.56
722 7591 3.117888 ACGTGGAGGCAATTAATGGAGAT 60.118 43.478 0.00 0.00 0.00 2.75
724 7593 3.499918 GTGGAGGCAATTAATGGAGATCG 59.500 47.826 0.00 0.00 0.00 3.69
725 7594 3.077359 GGAGGCAATTAATGGAGATCGG 58.923 50.000 0.00 0.00 0.00 4.18
739 7608 3.306364 GGAGATCGGTGAGGGTGAATATG 60.306 52.174 0.00 0.00 0.00 1.78
740 7609 2.634940 AGATCGGTGAGGGTGAATATGG 59.365 50.000 0.00 0.00 0.00 2.74
758 7630 2.958818 TGGTATACTCCTCGAGCCAAT 58.041 47.619 6.99 0.05 32.04 3.16
762 7634 2.981859 TACTCCTCGAGCCAATTTCC 57.018 50.000 6.99 0.00 32.04 3.13
772 7644 4.987912 TCGAGCCAATTTCCATTGTTTTTC 59.012 37.500 0.00 0.00 38.58 2.29
792 7664 9.423061 GTTTTTCAGCCAAATTGTAACATAGAT 57.577 29.630 0.00 0.00 0.00 1.98
819 7691 6.581542 GGTTAACATTAGATAGTCGTCCATCG 59.418 42.308 8.10 0.00 41.41 3.84
913 17671 2.432146 TCATACAGTCACCAGCCATCTC 59.568 50.000 0.00 0.00 0.00 2.75
926 17686 2.159128 AGCCATCTCGTTCACATCTCTG 60.159 50.000 0.00 0.00 0.00 3.35
930 17690 4.297510 CATCTCGTTCACATCTCTGATCC 58.702 47.826 0.00 0.00 0.00 3.36
946 17706 2.114616 GATCCTGAGCCCTTCTCTTGA 58.885 52.381 0.00 0.00 42.38 3.02
948 17708 2.555664 TCCTGAGCCCTTCTCTTGATT 58.444 47.619 0.00 0.00 42.38 2.57
956 17716 6.327365 TGAGCCCTTCTCTTGATTCACATATA 59.673 38.462 0.00 0.00 42.38 0.86
959 17719 9.055689 AGCCCTTCTCTTGATTCACATATATAT 57.944 33.333 0.00 0.00 0.00 0.86
994 17762 0.453449 GCTACACAAAGCTTGCTCGC 60.453 55.000 0.00 0.00 39.50 5.03
1065 17833 3.638627 TCTCCATGCTGATTATGTCGTCT 59.361 43.478 0.00 0.00 0.00 4.18
1067 17835 3.384467 TCCATGCTGATTATGTCGTCTCA 59.616 43.478 0.00 0.00 0.00 3.27
1071 17839 2.748605 CTGATTATGTCGTCTCAGGGC 58.251 52.381 0.00 0.00 33.15 5.19
1119 17891 1.291877 GGACGCTGTGCAGTACCAAG 61.292 60.000 0.00 0.00 0.00 3.61
1140 17912 1.071699 TGCAACGAGGAGGCTAAAACT 59.928 47.619 0.00 0.00 0.00 2.66
1149 17921 3.149981 GGAGGCTAAAACTTTCTGCAGT 58.850 45.455 14.67 0.00 0.00 4.40
1173 17957 1.550130 CCTGCTACAACCCTCGGGAA 61.550 60.000 9.43 0.00 38.96 3.97
1212 17996 0.389037 TCGATGAGTGCACTGCAGAC 60.389 55.000 27.27 16.82 40.08 3.51
1257 18041 1.335810 ACATGCACTTGTGACTGCAAG 59.664 47.619 4.79 0.97 46.18 4.01
1262 18046 0.464036 ACTTGTGACTGCAAGACCGA 59.536 50.000 12.05 0.00 46.34 4.69
1294 18078 4.687215 GCAGCAGCCTCACCGACA 62.687 66.667 0.00 0.00 33.58 4.35
1303 18087 1.935300 GCCTCACCGACAACTACACAG 60.935 57.143 0.00 0.00 0.00 3.66
1320 18104 0.601558 CAGATTGCCAAGCTTGCACT 59.398 50.000 21.43 15.59 38.72 4.40
1321 18105 1.814394 CAGATTGCCAAGCTTGCACTA 59.186 47.619 21.43 11.99 38.72 2.74
1322 18106 2.229543 CAGATTGCCAAGCTTGCACTAA 59.770 45.455 21.43 12.18 38.72 2.24
1335 18119 7.338800 AGCTTGCACTAACAGCATATTTAAT 57.661 32.000 9.84 0.00 42.33 1.40
1342 18126 7.696755 CACTAACAGCATATTTAATCAGTGCA 58.303 34.615 10.77 0.00 38.23 4.57
1344 18128 8.184192 ACTAACAGCATATTTAATCAGTGCAAC 58.816 33.333 10.77 0.00 38.23 4.17
1345 18129 6.513806 ACAGCATATTTAATCAGTGCAACA 57.486 33.333 10.77 0.00 41.43 3.33
1348 18132 5.043248 GCATATTTAATCAGTGCAACACCC 58.957 41.667 0.00 0.00 41.43 4.61
1428 23905 4.592942 AGCATGACTAATGATGGTTGTGT 58.407 39.130 0.00 0.00 38.72 3.72
1429 23906 4.637534 AGCATGACTAATGATGGTTGTGTC 59.362 41.667 0.00 0.00 38.72 3.67
1430 23907 4.637534 GCATGACTAATGATGGTTGTGTCT 59.362 41.667 0.00 0.00 38.72 3.41
1431 23908 5.124457 GCATGACTAATGATGGTTGTGTCTT 59.876 40.000 0.00 0.00 38.72 3.01
1432 23909 6.549061 CATGACTAATGATGGTTGTGTCTTG 58.451 40.000 0.00 0.00 38.72 3.02
1433 23910 5.620206 TGACTAATGATGGTTGTGTCTTGT 58.380 37.500 0.00 0.00 0.00 3.16
1434 23911 5.469760 TGACTAATGATGGTTGTGTCTTGTG 59.530 40.000 0.00 0.00 0.00 3.33
1443 23920 1.009675 GTGTCTTGTGCTTGTGCCG 60.010 57.895 0.00 0.00 38.71 5.69
1449 23926 0.310543 TTGTGCTTGTGCCGACATTC 59.689 50.000 0.00 0.00 38.71 2.67
1451 23928 2.202349 GCTTGTGCCGACATTCGC 60.202 61.111 0.00 0.00 38.82 4.70
1458 23935 1.205568 GCCGACATTCGCGTTTGAA 59.794 52.632 15.88 0.00 38.82 2.69
1459 23936 0.789383 GCCGACATTCGCGTTTGAAG 60.789 55.000 15.88 9.57 38.82 3.02
1460 23937 0.789383 CCGACATTCGCGTTTGAAGC 60.789 55.000 15.88 5.92 38.82 3.86
1468 23945 5.116983 ACATTCGCGTTTGAAGCTTTTTATG 59.883 36.000 15.88 0.00 0.00 1.90
1469 23946 4.217754 TCGCGTTTGAAGCTTTTTATGT 57.782 36.364 5.77 0.00 0.00 2.29
1470 23947 4.602995 TCGCGTTTGAAGCTTTTTATGTT 58.397 34.783 5.77 0.00 0.00 2.71
1471 23948 5.038033 TCGCGTTTGAAGCTTTTTATGTTT 58.962 33.333 5.77 0.00 0.00 2.83
1472 23949 5.517054 TCGCGTTTGAAGCTTTTTATGTTTT 59.483 32.000 5.77 0.00 0.00 2.43
1473 23950 5.833627 CGCGTTTGAAGCTTTTTATGTTTTC 59.166 36.000 0.00 0.00 0.00 2.29
1474 23951 6.507141 CGCGTTTGAAGCTTTTTATGTTTTCA 60.507 34.615 0.00 0.00 0.00 2.69
1475 23952 7.344441 GCGTTTGAAGCTTTTTATGTTTTCAT 58.656 30.769 0.00 0.00 43.60 2.57
1476 23953 7.850492 GCGTTTGAAGCTTTTTATGTTTTCATT 59.150 29.630 0.00 0.00 41.25 2.57
1477 23954 9.146270 CGTTTGAAGCTTTTTATGTTTTCATTG 57.854 29.630 0.00 0.00 41.25 2.82
1519 23996 4.078537 CCATGACCTGGTTTTGTGTGATA 58.921 43.478 0.00 0.00 40.49 2.15
1538 24019 2.196742 AGCATAGGAGGAATGGGTCA 57.803 50.000 0.00 0.00 0.00 4.02
1542 24023 2.887454 TAGGAGGAATGGGTCATGGA 57.113 50.000 0.00 0.00 0.00 3.41
1552 24033 0.465097 GGGTCATGGAGCATCACCTG 60.465 60.000 0.00 0.00 36.25 4.00
1575 24056 3.297830 GCGTTTTAGCCAAGGATTTGT 57.702 42.857 0.00 0.00 32.21 2.83
1581 24062 7.414762 GCGTTTTAGCCAAGGATTTGTATTCTA 60.415 37.037 0.00 0.00 32.21 2.10
1620 24108 5.869649 AATATGGGGAAAAGGGAATTTCG 57.130 39.130 0.00 0.00 39.64 3.46
1625 24113 3.937814 GGGAAAAGGGAATTTCGCAAAT 58.062 40.909 14.96 1.27 46.00 2.32
1633 24121 5.848406 AGGGAATTTCGCAAATTTAACACA 58.152 33.333 14.96 0.00 40.97 3.72
1641 24129 6.746104 TCGCAAATTTAACACAATGTGAAG 57.254 33.333 21.34 0.00 36.96 3.02
1651 24141 4.870363 ACACAATGTGAAGTTATGGTTGC 58.130 39.130 21.34 0.00 36.96 4.17
1654 24144 5.048504 CACAATGTGAAGTTATGGTTGCTCT 60.049 40.000 7.78 0.00 35.23 4.09
1665 24156 2.306847 TGGTTGCTCTTTGTTCCTTCC 58.693 47.619 0.00 0.00 0.00 3.46
1682 24173 1.007964 CCTCCATAGAGCTCGCGTG 60.008 63.158 8.37 4.44 38.96 5.34
1686 24177 1.874019 CATAGAGCTCGCGTGCGTT 60.874 57.895 25.34 19.51 40.74 4.84
1687 24178 1.586564 ATAGAGCTCGCGTGCGTTC 60.587 57.895 25.34 18.71 40.74 3.95
1688 24179 2.266376 ATAGAGCTCGCGTGCGTTCA 62.266 55.000 25.34 13.54 40.74 3.18
1690 24181 3.131661 GAGCTCGCGTGCGTTCATC 62.132 63.158 25.34 14.42 40.74 2.92
1691 24182 3.478394 GCTCGCGTGCGTTCATCA 61.478 61.111 18.06 0.00 40.74 3.07
1696 24191 1.207593 GCGTGCGTTCATCAGCTTT 59.792 52.632 0.00 0.00 0.00 3.51
1710 24205 7.870509 TCATCAGCTTTTATACATCAGCTTT 57.129 32.000 0.00 0.00 40.75 3.51
1713 24208 6.775088 TCAGCTTTTATACATCAGCTTTTCG 58.225 36.000 0.00 0.00 40.75 3.46
1744 24247 2.289274 TGCATTTGTGTGTCGTTGTAGG 59.711 45.455 0.00 0.00 0.00 3.18
1748 24251 3.737032 TTGTGTGTCGTTGTAGGATCA 57.263 42.857 0.00 0.00 0.00 2.92
1755 24258 7.148490 TGTGTGTCGTTGTAGGATCAAATAATG 60.148 37.037 0.00 0.00 0.00 1.90
1762 24265 7.255242 CGTTGTAGGATCAAATAATGCTGGAAT 60.255 37.037 0.00 0.00 0.00 3.01
1767 24270 6.040166 AGGATCAAATAATGCTGGAATGTGAC 59.960 38.462 0.00 0.00 0.00 3.67
1771 24274 1.647545 AATGCTGGAATGTGACGCGG 61.648 55.000 12.47 0.00 0.00 6.46
1772 24275 2.434185 GCTGGAATGTGACGCGGA 60.434 61.111 12.47 0.00 0.00 5.54
1774 24277 1.374125 CTGGAATGTGACGCGGACA 60.374 57.895 12.47 13.73 0.00 4.02
1777 24280 0.802494 GGAATGTGACGCGGACATTT 59.198 50.000 28.56 17.87 42.74 2.32
1779 24282 1.196808 GAATGTGACGCGGACATTTGT 59.803 47.619 28.56 14.87 42.74 2.83
1791 24294 2.906354 GACATTTGTCCTGCCGTCTAT 58.094 47.619 0.00 0.00 39.07 1.98
1797 24300 4.811969 TTGTCCTGCCGTCTATTTTCTA 57.188 40.909 0.00 0.00 0.00 2.10
1810 24313 7.041780 CCGTCTATTTTCTATCATTGTTGAGGG 60.042 40.741 0.00 0.00 34.73 4.30
1811 24314 7.041780 CGTCTATTTTCTATCATTGTTGAGGGG 60.042 40.741 0.00 0.00 34.73 4.79
1823 24326 3.551846 TGTTGAGGGGACTGTTCTTTTC 58.448 45.455 0.00 0.00 44.43 2.29
1826 24329 5.073144 TGTTGAGGGGACTGTTCTTTTCTAT 59.927 40.000 0.00 0.00 44.43 1.98
1827 24330 5.165961 TGAGGGGACTGTTCTTTTCTATG 57.834 43.478 0.00 0.00 44.43 2.23
1828 24331 4.597507 TGAGGGGACTGTTCTTTTCTATGT 59.402 41.667 0.00 0.00 44.43 2.29
1829 24332 5.783360 TGAGGGGACTGTTCTTTTCTATGTA 59.217 40.000 0.00 0.00 44.43 2.29
1832 24335 6.940867 AGGGGACTGTTCTTTTCTATGTAAAC 59.059 38.462 0.00 0.00 41.13 2.01
1833 24336 6.940867 GGGGACTGTTCTTTTCTATGTAAACT 59.059 38.462 0.00 0.00 0.00 2.66
1834 24337 8.098912 GGGGACTGTTCTTTTCTATGTAAACTA 58.901 37.037 0.00 0.00 0.00 2.24
1838 24341 9.555727 ACTGTTCTTTTCTATGTAAACTAGCAA 57.444 29.630 0.00 0.00 0.00 3.91
1840 24343 8.999431 TGTTCTTTTCTATGTAAACTAGCAAGG 58.001 33.333 0.00 0.00 0.00 3.61
1841 24344 9.000486 GTTCTTTTCTATGTAAACTAGCAAGGT 58.000 33.333 0.00 0.00 0.00 3.50
1842 24345 8.547967 TCTTTTCTATGTAAACTAGCAAGGTG 57.452 34.615 0.00 0.00 0.00 4.00
1843 24346 7.606456 TCTTTTCTATGTAAACTAGCAAGGTGG 59.394 37.037 0.00 0.00 0.00 4.61
1855 24358 4.722193 AGGTGGACCTCGCAAATG 57.278 55.556 0.00 0.00 44.77 2.32
1856 24359 1.675641 AGGTGGACCTCGCAAATGC 60.676 57.895 0.00 0.00 44.77 3.56
1871 24374 3.776158 TGCGAGGGCATGCTTTTT 58.224 50.000 18.92 0.26 46.21 1.94
1872 24375 2.954161 TGCGAGGGCATGCTTTTTA 58.046 47.368 18.92 0.00 46.21 1.52
1873 24376 0.810648 TGCGAGGGCATGCTTTTTAG 59.189 50.000 18.92 5.90 46.21 1.85
1874 24377 0.811281 GCGAGGGCATGCTTTTTAGT 59.189 50.000 18.92 0.00 39.62 2.24
1876 24379 1.812571 CGAGGGCATGCTTTTTAGTGT 59.187 47.619 18.92 0.00 0.00 3.55
1877 24380 2.414559 CGAGGGCATGCTTTTTAGTGTG 60.415 50.000 18.92 0.00 0.00 3.82
1878 24381 2.558359 GAGGGCATGCTTTTTAGTGTGT 59.442 45.455 18.92 0.00 0.00 3.72
1880 24383 3.005791 AGGGCATGCTTTTTAGTGTGTTC 59.994 43.478 18.92 0.00 0.00 3.18
1882 24385 2.979813 GCATGCTTTTTAGTGTGTTCCG 59.020 45.455 11.37 0.00 0.00 4.30
1883 24386 2.766970 TGCTTTTTAGTGTGTTCCGC 57.233 45.000 0.00 0.00 0.00 5.54
1884 24387 2.017782 TGCTTTTTAGTGTGTTCCGCA 58.982 42.857 0.00 0.00 0.00 5.69
1893 24396 2.446341 GTGTTCCGCACTCAGCTAC 58.554 57.895 0.00 0.00 44.41 3.58
1894 24397 1.014564 GTGTTCCGCACTCAGCTACC 61.015 60.000 0.00 0.00 44.41 3.18
1896 24399 0.320421 GTTCCGCACTCAGCTACCAA 60.320 55.000 0.00 0.00 42.61 3.67
1897 24400 0.037326 TTCCGCACTCAGCTACCAAG 60.037 55.000 0.00 0.00 42.61 3.61
1899 24402 0.320771 CCGCACTCAGCTACCAAGTT 60.321 55.000 0.00 0.00 42.61 2.66
1902 24405 2.860735 CGCACTCAGCTACCAAGTTATC 59.139 50.000 0.00 0.00 42.61 1.75
1905 24408 4.688021 CACTCAGCTACCAAGTTATCCTC 58.312 47.826 0.00 0.00 0.00 3.71
1906 24409 3.381908 ACTCAGCTACCAAGTTATCCTCG 59.618 47.826 0.00 0.00 0.00 4.63
1907 24410 2.693591 TCAGCTACCAAGTTATCCTCGG 59.306 50.000 0.00 0.00 0.00 4.63
1908 24411 2.431057 CAGCTACCAAGTTATCCTCGGT 59.569 50.000 0.00 0.00 0.00 4.69
1910 24413 2.167900 GCTACCAAGTTATCCTCGGTGT 59.832 50.000 0.00 0.00 0.00 4.16
1911 24414 3.737355 GCTACCAAGTTATCCTCGGTGTC 60.737 52.174 0.00 0.00 0.00 3.67
1912 24415 2.537143 ACCAAGTTATCCTCGGTGTCT 58.463 47.619 0.00 0.00 0.00 3.41
1914 24417 2.496070 CCAAGTTATCCTCGGTGTCTGA 59.504 50.000 0.00 0.00 0.00 3.27
1915 24418 3.133003 CCAAGTTATCCTCGGTGTCTGAT 59.867 47.826 0.00 0.00 0.00 2.90
1916 24419 4.383118 CCAAGTTATCCTCGGTGTCTGATT 60.383 45.833 0.00 0.00 0.00 2.57
1917 24420 4.392921 AGTTATCCTCGGTGTCTGATTG 57.607 45.455 0.00 0.00 0.00 2.67
1918 24421 3.133003 AGTTATCCTCGGTGTCTGATTGG 59.867 47.826 0.00 0.00 0.00 3.16
1920 24423 0.895530 TCCTCGGTGTCTGATTGGAC 59.104 55.000 0.00 0.00 36.81 4.02
1921 24424 0.458543 CCTCGGTGTCTGATTGGACG 60.459 60.000 0.00 0.00 38.91 4.79
1923 24426 0.526211 TCGGTGTCTGATTGGACGAG 59.474 55.000 0.00 0.00 38.91 4.18
1924 24427 0.526211 CGGTGTCTGATTGGACGAGA 59.474 55.000 0.00 0.00 38.91 4.04
1925 24428 1.135139 CGGTGTCTGATTGGACGAGAT 59.865 52.381 0.00 0.00 38.91 2.75
1926 24429 2.544685 GGTGTCTGATTGGACGAGATG 58.455 52.381 0.00 0.00 38.91 2.90
1928 24431 1.827344 TGTCTGATTGGACGAGATGCT 59.173 47.619 0.00 0.00 38.91 3.79
1929 24432 2.200067 GTCTGATTGGACGAGATGCTG 58.800 52.381 0.00 0.00 0.00 4.41
1930 24433 2.102578 TCTGATTGGACGAGATGCTGA 58.897 47.619 0.00 0.00 0.00 4.26
1931 24434 2.100418 TCTGATTGGACGAGATGCTGAG 59.900 50.000 0.00 0.00 0.00 3.35
1934 24437 2.591571 TTGGACGAGATGCTGAGATG 57.408 50.000 0.00 0.00 0.00 2.90
2182 24685 4.753662 ATGGCCTGCTGCTGGTGG 62.754 66.667 23.91 11.27 40.92 4.61
2184 24687 4.437587 GGCCTGCTGCTGGTGGAT 62.438 66.667 23.91 0.00 40.92 3.41
2186 24689 1.077501 GCCTGCTGCTGGTGGATAA 60.078 57.895 23.91 0.00 36.87 1.75
2187 24690 0.466922 GCCTGCTGCTGGTGGATAAT 60.467 55.000 23.91 0.00 36.87 1.28
2189 24692 1.315690 CTGCTGCTGGTGGATAATGG 58.684 55.000 0.00 0.00 0.00 3.16
2191 24694 1.027357 GCTGCTGGTGGATAATGGTG 58.973 55.000 0.00 0.00 0.00 4.17
2192 24695 1.683943 CTGCTGGTGGATAATGGTGG 58.316 55.000 0.00 0.00 0.00 4.61
2193 24696 0.258484 TGCTGGTGGATAATGGTGGG 59.742 55.000 0.00 0.00 0.00 4.61
2194 24697 1.109323 GCTGGTGGATAATGGTGGGC 61.109 60.000 0.00 0.00 0.00 5.36
2195 24698 0.819259 CTGGTGGATAATGGTGGGCG 60.819 60.000 0.00 0.00 0.00 6.13
2196 24699 1.528309 GGTGGATAATGGTGGGCGG 60.528 63.158 0.00 0.00 0.00 6.13
2197 24700 1.529796 GTGGATAATGGTGGGCGGA 59.470 57.895 0.00 0.00 0.00 5.54
2198 24701 0.818040 GTGGATAATGGTGGGCGGAC 60.818 60.000 0.00 0.00 0.00 4.79
2199 24702 1.275421 TGGATAATGGTGGGCGGACA 61.275 55.000 0.00 0.00 0.00 4.02
2200 24703 0.106918 GGATAATGGTGGGCGGACAA 60.107 55.000 0.00 0.00 0.00 3.18
2201 24704 1.308998 GATAATGGTGGGCGGACAAG 58.691 55.000 0.00 0.00 0.00 3.16
2203 24706 1.847798 TAATGGTGGGCGGACAAGCT 61.848 55.000 0.00 0.00 37.29 3.74
2204 24707 3.925630 ATGGTGGGCGGACAAGCTG 62.926 63.158 0.00 0.00 37.29 4.24
2206 24709 4.643387 GTGGGCGGACAAGCTGGT 62.643 66.667 0.00 0.00 37.29 4.00
2207 24710 4.641645 TGGGCGGACAAGCTGGTG 62.642 66.667 0.00 0.00 37.29 4.17
2220 24723 2.827800 GCTGGTGCTAGCATAGATGA 57.172 50.000 26.70 7.75 42.77 2.92
2221 24724 2.686235 GCTGGTGCTAGCATAGATGAG 58.314 52.381 26.70 15.60 42.77 2.90
2222 24725 2.298446 GCTGGTGCTAGCATAGATGAGA 59.702 50.000 26.70 0.00 42.77 3.27
2223 24726 3.055963 GCTGGTGCTAGCATAGATGAGAT 60.056 47.826 26.70 0.00 42.77 2.75
2224 24727 4.746729 CTGGTGCTAGCATAGATGAGATC 58.253 47.826 22.51 3.24 42.77 2.75
2225 24728 4.154942 TGGTGCTAGCATAGATGAGATCA 58.845 43.478 22.51 0.00 42.77 2.92
2226 24729 4.590222 TGGTGCTAGCATAGATGAGATCAA 59.410 41.667 22.51 0.00 42.77 2.57
2227 24730 4.928615 GGTGCTAGCATAGATGAGATCAAC 59.071 45.833 22.51 1.98 42.77 3.18
2228 24731 4.620609 GTGCTAGCATAGATGAGATCAACG 59.379 45.833 22.51 0.00 42.77 4.10
2229 24732 4.520492 TGCTAGCATAGATGAGATCAACGA 59.480 41.667 14.93 0.00 42.77 3.85
2230 24733 5.094812 GCTAGCATAGATGAGATCAACGAG 58.905 45.833 10.63 0.00 42.77 4.18
2231 24734 5.106357 GCTAGCATAGATGAGATCAACGAGA 60.106 44.000 10.63 0.00 42.77 4.04
2232 24735 5.119931 AGCATAGATGAGATCAACGAGAC 57.880 43.478 0.00 0.00 0.00 3.36
2233 24736 4.826733 AGCATAGATGAGATCAACGAGACT 59.173 41.667 0.00 0.00 0.00 3.24
2234 24737 6.000840 AGCATAGATGAGATCAACGAGACTA 58.999 40.000 0.00 0.00 0.00 2.59
2235 24738 6.072728 AGCATAGATGAGATCAACGAGACTAC 60.073 42.308 0.00 0.00 0.00 2.73
2236 24739 4.804608 AGATGAGATCAACGAGACTACG 57.195 45.455 0.00 0.00 39.31 3.51
2237 24740 3.562141 AGATGAGATCAACGAGACTACGG 59.438 47.826 0.00 0.00 37.61 4.02
2238 24741 2.014857 TGAGATCAACGAGACTACGGG 58.985 52.381 0.00 0.00 37.61 5.28
2239 24742 1.334243 GAGATCAACGAGACTACGGGG 59.666 57.143 0.00 0.00 37.61 5.73
2240 24743 0.384669 GATCAACGAGACTACGGGGG 59.615 60.000 0.00 0.00 37.61 5.40
2241 24744 1.673808 ATCAACGAGACTACGGGGGC 61.674 60.000 0.00 0.00 37.61 5.80
2242 24745 2.283388 AACGAGACTACGGGGGCA 60.283 61.111 0.00 0.00 37.61 5.36
2243 24746 1.684734 AACGAGACTACGGGGGCAT 60.685 57.895 0.00 0.00 37.61 4.40
2244 24747 1.956629 AACGAGACTACGGGGGCATG 61.957 60.000 0.00 0.00 37.61 4.06
2245 24748 2.125326 CGAGACTACGGGGGCATGA 61.125 63.158 0.00 0.00 0.00 3.07
2246 24749 1.672854 CGAGACTACGGGGGCATGAA 61.673 60.000 0.00 0.00 0.00 2.57
2247 24750 0.179081 GAGACTACGGGGGCATGAAC 60.179 60.000 0.00 0.00 0.00 3.18
2248 24751 1.520787 GACTACGGGGGCATGAACG 60.521 63.158 0.00 0.00 0.00 3.95
2249 24752 2.203015 CTACGGGGGCATGAACGG 60.203 66.667 0.00 0.00 0.00 4.44
2250 24753 3.004354 TACGGGGGCATGAACGGT 61.004 61.111 0.00 0.00 0.00 4.83
2251 24754 3.318006 TACGGGGGCATGAACGGTG 62.318 63.158 0.00 0.00 0.00 4.94
2255 24758 3.747976 GGGCATGAACGGTGGCAC 61.748 66.667 9.70 9.70 43.28 5.01
2256 24759 2.672996 GGCATGAACGGTGGCACT 60.673 61.111 18.45 0.00 41.35 4.40
2257 24760 1.376683 GGCATGAACGGTGGCACTA 60.377 57.895 18.45 0.00 41.35 2.74
2258 24761 1.369091 GGCATGAACGGTGGCACTAG 61.369 60.000 18.45 14.20 41.35 2.57
2259 24762 1.369091 GCATGAACGGTGGCACTAGG 61.369 60.000 18.45 9.74 0.00 3.02
2260 24763 1.078426 ATGAACGGTGGCACTAGGC 60.078 57.895 18.45 9.16 43.74 3.93
2273 24776 3.578688 GCACTAGGCAAGAAAACAATGG 58.421 45.455 0.00 0.00 43.97 3.16
2274 24777 3.005791 GCACTAGGCAAGAAAACAATGGT 59.994 43.478 0.00 0.00 43.97 3.55
2275 24778 4.217550 GCACTAGGCAAGAAAACAATGGTA 59.782 41.667 0.00 0.00 43.97 3.25
2276 24779 5.278758 GCACTAGGCAAGAAAACAATGGTAA 60.279 40.000 0.00 0.00 43.97 2.85
2277 24780 6.381801 CACTAGGCAAGAAAACAATGGTAAG 58.618 40.000 0.00 0.00 0.00 2.34
2278 24781 4.871933 AGGCAAGAAAACAATGGTAAGG 57.128 40.909 0.00 0.00 0.00 2.69
2279 24782 3.578282 AGGCAAGAAAACAATGGTAAGGG 59.422 43.478 0.00 0.00 0.00 3.95
2280 24783 3.306710 GGCAAGAAAACAATGGTAAGGGG 60.307 47.826 0.00 0.00 0.00 4.79
2281 24784 3.306710 GCAAGAAAACAATGGTAAGGGGG 60.307 47.826 0.00 0.00 0.00 5.40
2282 24785 4.156477 CAAGAAAACAATGGTAAGGGGGA 58.844 43.478 0.00 0.00 0.00 4.81
2283 24786 4.692523 AGAAAACAATGGTAAGGGGGAT 57.307 40.909 0.00 0.00 0.00 3.85
2284 24787 4.352893 AGAAAACAATGGTAAGGGGGATG 58.647 43.478 0.00 0.00 0.00 3.51
2285 24788 2.159179 AACAATGGTAAGGGGGATGC 57.841 50.000 0.00 0.00 0.00 3.91
2286 24789 0.106719 ACAATGGTAAGGGGGATGCG 60.107 55.000 0.00 0.00 0.00 4.73
2287 24790 0.106719 CAATGGTAAGGGGGATGCGT 60.107 55.000 0.00 0.00 0.00 5.24
2288 24791 1.142060 CAATGGTAAGGGGGATGCGTA 59.858 52.381 0.00 0.00 0.00 4.42
2289 24792 1.513858 ATGGTAAGGGGGATGCGTAA 58.486 50.000 0.00 0.00 0.00 3.18
2290 24793 1.513858 TGGTAAGGGGGATGCGTAAT 58.486 50.000 0.00 0.00 0.00 1.89
2291 24794 1.847737 TGGTAAGGGGGATGCGTAATT 59.152 47.619 0.00 0.00 0.00 1.40
2292 24795 3.047115 TGGTAAGGGGGATGCGTAATTA 58.953 45.455 0.00 0.00 0.00 1.40
2293 24796 3.071892 TGGTAAGGGGGATGCGTAATTAG 59.928 47.826 0.00 0.00 0.00 1.73
2294 24797 2.271944 AAGGGGGATGCGTAATTAGC 57.728 50.000 0.00 0.00 0.00 3.09
2313 24816 8.683550 AATTAGCAAAGTTTTAAATAGTCGGC 57.316 30.769 0.00 0.00 0.00 5.54
2314 24817 5.959618 AGCAAAGTTTTAAATAGTCGGCT 57.040 34.783 0.00 0.00 0.00 5.52
2315 24818 8.550710 TTAGCAAAGTTTTAAATAGTCGGCTA 57.449 30.769 0.00 0.00 0.00 3.93
2316 24819 7.625828 AGCAAAGTTTTAAATAGTCGGCTAT 57.374 32.000 3.03 3.03 39.46 2.97
2317 24820 8.726870 AGCAAAGTTTTAAATAGTCGGCTATA 57.273 30.769 10.52 0.00 36.95 1.31
2318 24821 8.827677 AGCAAAGTTTTAAATAGTCGGCTATAG 58.172 33.333 10.52 0.00 36.95 1.31
2319 24822 7.586664 GCAAAGTTTTAAATAGTCGGCTATAGC 59.413 37.037 16.78 16.78 36.95 2.97
2333 24836 4.968553 TAGCCCCGCTATAGCCTT 57.031 55.556 19.00 3.16 40.44 4.35
2334 24837 3.159141 TAGCCCCGCTATAGCCTTT 57.841 52.632 19.00 3.50 40.44 3.11
2335 24838 0.685097 TAGCCCCGCTATAGCCTTTG 59.315 55.000 19.00 4.81 40.44 2.77
2336 24839 1.148498 GCCCCGCTATAGCCTTTGT 59.852 57.895 19.00 0.00 37.91 2.83
2337 24840 1.166531 GCCCCGCTATAGCCTTTGTG 61.167 60.000 19.00 3.71 37.91 3.33
2338 24841 0.468226 CCCCGCTATAGCCTTTGTGA 59.532 55.000 19.00 0.00 37.91 3.58
2339 24842 1.541233 CCCCGCTATAGCCTTTGTGAG 60.541 57.143 19.00 2.25 37.91 3.51
2340 24843 1.221414 CCGCTATAGCCTTTGTGAGC 58.779 55.000 19.00 0.00 37.91 4.26
2341 24844 1.202580 CCGCTATAGCCTTTGTGAGCT 60.203 52.381 19.00 0.00 43.20 4.09
2342 24845 2.555199 CGCTATAGCCTTTGTGAGCTT 58.445 47.619 19.00 0.00 40.56 3.74
2343 24846 2.541762 CGCTATAGCCTTTGTGAGCTTC 59.458 50.000 19.00 0.00 40.56 3.86
2344 24847 3.535561 GCTATAGCCTTTGTGAGCTTCA 58.464 45.455 14.13 0.00 40.56 3.02
2345 24848 4.133078 GCTATAGCCTTTGTGAGCTTCAT 58.867 43.478 14.13 0.00 40.56 2.57
2346 24849 4.213059 GCTATAGCCTTTGTGAGCTTCATC 59.787 45.833 14.13 0.00 40.56 2.92
2347 24850 1.446907 AGCCTTTGTGAGCTTCATCG 58.553 50.000 0.00 0.00 35.22 3.84
2348 24851 0.179179 GCCTTTGTGAGCTTCATCGC 60.179 55.000 0.00 0.00 0.00 4.58
2349 24852 1.446907 CCTTTGTGAGCTTCATCGCT 58.553 50.000 0.00 0.00 44.33 4.93
2350 24853 2.621338 CCTTTGTGAGCTTCATCGCTA 58.379 47.619 0.00 0.00 41.08 4.26
2351 24854 3.002791 CCTTTGTGAGCTTCATCGCTAA 58.997 45.455 0.00 0.00 41.08 3.09
2352 24855 3.436704 CCTTTGTGAGCTTCATCGCTAAA 59.563 43.478 0.00 0.00 41.08 1.85
2353 24856 4.095483 CCTTTGTGAGCTTCATCGCTAAAT 59.905 41.667 0.00 0.00 41.08 1.40
2354 24857 4.864916 TTGTGAGCTTCATCGCTAAATC 57.135 40.909 0.00 0.00 41.08 2.17
2355 24858 3.860641 TGTGAGCTTCATCGCTAAATCA 58.139 40.909 0.00 0.00 41.08 2.57
2356 24859 4.252878 TGTGAGCTTCATCGCTAAATCAA 58.747 39.130 0.00 0.00 41.08 2.57
2357 24860 4.877823 TGTGAGCTTCATCGCTAAATCAAT 59.122 37.500 0.00 0.00 41.08 2.57
2358 24861 5.203370 GTGAGCTTCATCGCTAAATCAATG 58.797 41.667 0.00 0.00 41.08 2.82
2359 24862 4.217497 GAGCTTCATCGCTAAATCAATGC 58.783 43.478 0.00 0.00 41.08 3.56
2360 24863 3.628942 AGCTTCATCGCTAAATCAATGCA 59.371 39.130 0.00 0.00 38.76 3.96
2361 24864 3.727723 GCTTCATCGCTAAATCAATGCAC 59.272 43.478 0.00 0.00 0.00 4.57
2362 24865 4.497006 GCTTCATCGCTAAATCAATGCACT 60.497 41.667 0.00 0.00 0.00 4.40
2363 24866 5.565592 TTCATCGCTAAATCAATGCACTT 57.434 34.783 0.00 0.00 0.00 3.16
2364 24867 5.565592 TCATCGCTAAATCAATGCACTTT 57.434 34.783 0.00 0.00 0.00 2.66
2365 24868 5.953183 TCATCGCTAAATCAATGCACTTTT 58.047 33.333 0.00 0.00 0.00 2.27
2366 24869 7.082700 TCATCGCTAAATCAATGCACTTTTA 57.917 32.000 0.00 0.00 0.00 1.52
2367 24870 7.534282 TCATCGCTAAATCAATGCACTTTTAA 58.466 30.769 0.00 0.00 0.00 1.52
2368 24871 7.484641 TCATCGCTAAATCAATGCACTTTTAAC 59.515 33.333 0.00 0.00 0.00 2.01
2369 24872 6.673106 TCGCTAAATCAATGCACTTTTAACA 58.327 32.000 0.00 0.00 0.00 2.41
2370 24873 6.580791 TCGCTAAATCAATGCACTTTTAACAC 59.419 34.615 0.00 0.00 0.00 3.32
2371 24874 6.582295 CGCTAAATCAATGCACTTTTAACACT 59.418 34.615 0.00 0.00 0.00 3.55
2372 24875 7.114811 CGCTAAATCAATGCACTTTTAACACTT 59.885 33.333 0.00 0.00 0.00 3.16
2373 24876 9.405587 GCTAAATCAATGCACTTTTAACACTTA 57.594 29.630 0.00 0.00 0.00 2.24
2378 24881 9.979578 ATCAATGCACTTTTAACACTTAATTGA 57.020 25.926 0.00 0.00 0.00 2.57
2379 24882 9.809096 TCAATGCACTTTTAACACTTAATTGAA 57.191 25.926 0.00 0.00 0.00 2.69
2387 24890 9.777843 CTTTTAACACTTAATTGAAAATGACGC 57.222 29.630 0.00 0.00 0.00 5.19
2388 24891 9.522804 TTTTAACACTTAATTGAAAATGACGCT 57.477 25.926 0.00 0.00 0.00 5.07
2393 24896 9.988350 ACACTTAATTGAAAATGACGCTAATAG 57.012 29.630 0.00 0.00 0.00 1.73
2394 24897 8.947940 CACTTAATTGAAAATGACGCTAATAGC 58.052 33.333 1.41 1.41 38.02 2.97
2395 24898 8.129211 ACTTAATTGAAAATGACGCTAATAGCC 58.871 33.333 6.69 0.00 38.18 3.93
2396 24899 4.893424 TTGAAAATGACGCTAATAGCCC 57.107 40.909 6.69 0.00 38.18 5.19
2397 24900 2.869801 TGAAAATGACGCTAATAGCCCG 59.130 45.455 6.69 0.00 38.18 6.13
2398 24901 2.614829 AAATGACGCTAATAGCCCGT 57.385 45.000 6.69 0.00 38.18 5.28
2399 24902 2.614829 AATGACGCTAATAGCCCGTT 57.385 45.000 6.69 4.10 38.18 4.44
2400 24903 3.738830 AATGACGCTAATAGCCCGTTA 57.261 42.857 6.69 0.00 38.18 3.18
2401 24904 3.955650 ATGACGCTAATAGCCCGTTAT 57.044 42.857 6.69 0.00 38.18 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.014857 GGCCGAGGTTTTATCAAGGTC 58.985 52.381 0.00 0.00 0.00 3.85
44 45 1.224592 CCAGCTAGGCGATTTGGGT 59.775 57.895 0.00 0.00 0.00 4.51
61 62 0.976590 GATCCCCGGTAGGCTATCCC 60.977 65.000 0.00 0.00 35.76 3.85
131 144 6.828785 TGTTATATCCTCCTCCTTGAAAAAGC 59.171 38.462 0.00 0.00 0.00 3.51
151 164 7.779073 ACGGCAAACTATAAGTACTCTGTTAT 58.221 34.615 0.00 0.00 0.00 1.89
190 203 4.835678 ACTATGTGACAGATGCATGAACA 58.164 39.130 2.46 3.54 0.00 3.18
224 299 0.028902 CGTCGTGCATACATCGAGGA 59.971 55.000 3.06 0.00 37.37 3.71
259 337 0.972883 GAGGAGAATCGGGATGGAGG 59.027 60.000 0.00 0.00 34.37 4.30
262 340 2.297597 GTGTAGAGGAGAATCGGGATGG 59.702 54.545 0.00 0.00 34.37 3.51
264 342 3.314307 TGTGTAGAGGAGAATCGGGAT 57.686 47.619 0.00 0.00 34.37 3.85
268 346 2.223595 ACGCATGTGTAGAGGAGAATCG 60.224 50.000 10.90 0.00 34.37 3.34
288 366 4.193826 TGGATCTTCTCTAGCACAACAC 57.806 45.455 0.00 0.00 0.00 3.32
289 367 4.890158 TTGGATCTTCTCTAGCACAACA 57.110 40.909 0.00 0.00 0.00 3.33
303 5944 7.180663 AGAGGAATTGAGTTTTGATTGGATCT 58.819 34.615 0.00 0.00 0.00 2.75
310 5951 4.834496 TGGCAAGAGGAATTGAGTTTTGAT 59.166 37.500 0.00 0.00 31.55 2.57
322 5963 7.180322 TGCATATTATTTTTGGCAAGAGGAA 57.820 32.000 0.00 0.00 0.00 3.36
338 5979 7.025485 TCGCATCAATTGACTTTGCATATTA 57.975 32.000 24.70 8.16 32.94 0.98
344 5986 3.789756 CAGATCGCATCAATTGACTTTGC 59.210 43.478 18.45 18.45 0.00 3.68
353 5995 4.022589 CCTTAATTGCCAGATCGCATCAAT 60.023 41.667 0.00 0.00 38.87 2.57
356 5998 2.880890 ACCTTAATTGCCAGATCGCATC 59.119 45.455 0.00 0.00 38.87 3.91
371 6013 6.902771 TGCTTTTAGTAAATGGCACCTTAA 57.097 33.333 15.33 0.00 0.00 1.85
380 6022 8.352942 ACTTGAGGAACTTGCTTTTAGTAAATG 58.647 33.333 0.00 0.20 41.55 2.32
419 6061 3.443099 GATCGGCGGATCATGATCATA 57.557 47.619 31.49 15.09 46.81 2.15
428 6070 6.810407 TGACAAGATCAAGATCGGCGGATC 62.810 50.000 22.91 22.91 42.48 3.36
429 6071 1.414181 ACAAGATCAAGATCGGCGGAT 59.586 47.619 7.21 6.45 42.48 4.18
430 6072 0.824109 ACAAGATCAAGATCGGCGGA 59.176 50.000 7.21 0.00 42.48 5.54
431 6073 1.212616 GACAAGATCAAGATCGGCGG 58.787 55.000 7.21 0.00 42.48 6.13
432 6074 1.926561 TGACAAGATCAAGATCGGCG 58.073 50.000 0.00 0.00 42.48 6.46
471 6412 5.709966 ACGAAGCATTGACTTTTATTTCCC 58.290 37.500 0.00 0.00 0.00 3.97
474 6415 9.522804 TGTTTTACGAAGCATTGACTTTTATTT 57.477 25.926 0.00 0.00 0.00 1.40
476 6417 8.964150 GTTGTTTTACGAAGCATTGACTTTTAT 58.036 29.630 0.00 0.00 0.00 1.40
477 6418 7.432838 GGTTGTTTTACGAAGCATTGACTTTTA 59.567 33.333 0.00 0.00 0.00 1.52
545 6489 9.214953 CAATTGAGCTTGACGATAAACTAAATC 57.785 33.333 0.00 0.00 0.00 2.17
550 6494 5.700832 TGACAATTGAGCTTGACGATAAACT 59.299 36.000 13.59 0.00 0.00 2.66
643 6589 7.201785 CGTATTAAAATGGCTTGATAACACCCT 60.202 37.037 0.00 0.00 0.00 4.34
644 6590 6.915843 CGTATTAAAATGGCTTGATAACACCC 59.084 38.462 0.00 0.00 0.00 4.61
645 6591 7.699566 TCGTATTAAAATGGCTTGATAACACC 58.300 34.615 0.00 0.00 0.00 4.16
664 6610 7.176690 ACAGTTGGAATCAAAGGAAATCGTATT 59.823 33.333 0.00 0.00 34.28 1.89
669 6615 6.015940 ACAGACAGTTGGAATCAAAGGAAATC 60.016 38.462 0.00 0.00 34.28 2.17
671 6617 5.200483 ACAGACAGTTGGAATCAAAGGAAA 58.800 37.500 0.00 0.00 34.28 3.13
684 6630 3.126171 TCCACGTTTTGAACAGACAGTTG 59.874 43.478 0.00 0.00 41.51 3.16
686 6632 2.936498 CTCCACGTTTTGAACAGACAGT 59.064 45.455 0.00 0.00 0.00 3.55
687 6633 2.287915 CCTCCACGTTTTGAACAGACAG 59.712 50.000 0.00 0.00 0.00 3.51
696 7565 3.925913 CCATTAATTGCCTCCACGTTTTG 59.074 43.478 0.00 0.00 0.00 2.44
699 7568 3.016736 CTCCATTAATTGCCTCCACGTT 58.983 45.455 0.00 0.00 0.00 3.99
702 7571 3.499918 CGATCTCCATTAATTGCCTCCAC 59.500 47.826 0.00 0.00 0.00 4.02
705 7574 3.499918 CACCGATCTCCATTAATTGCCTC 59.500 47.826 0.00 0.00 0.00 4.70
712 7581 2.434336 CACCCTCACCGATCTCCATTAA 59.566 50.000 0.00 0.00 0.00 1.40
722 7591 1.874129 ACCATATTCACCCTCACCGA 58.126 50.000 0.00 0.00 0.00 4.69
724 7593 5.046520 GGAGTATACCATATTCACCCTCACC 60.047 48.000 0.00 0.00 0.00 4.02
725 7594 5.780793 AGGAGTATACCATATTCACCCTCAC 59.219 44.000 0.00 0.00 0.00 3.51
739 7608 4.308265 GAAATTGGCTCGAGGAGTATACC 58.692 47.826 15.58 5.28 31.39 2.73
740 7609 4.202223 TGGAAATTGGCTCGAGGAGTATAC 60.202 45.833 15.58 0.00 31.39 1.47
758 7630 6.376581 ACAATTTGGCTGAAAAACAATGGAAA 59.623 30.769 0.78 0.00 0.00 3.13
762 7634 7.692088 TGTTACAATTTGGCTGAAAAACAATG 58.308 30.769 0.78 0.00 0.00 2.82
772 7644 5.296780 ACCGATCTATGTTACAATTTGGCTG 59.703 40.000 0.78 0.00 0.00 4.85
792 7664 5.589855 TGGACGACTATCTAATGTTAACCGA 59.410 40.000 2.48 0.00 0.00 4.69
913 17671 3.704512 CTCAGGATCAGAGATGTGAACG 58.295 50.000 8.32 0.00 35.09 3.95
926 17686 2.114616 TCAAGAGAAGGGCTCAGGATC 58.885 52.381 0.00 0.00 46.45 3.36
930 17690 3.269178 GTGAATCAAGAGAAGGGCTCAG 58.731 50.000 0.00 0.00 46.45 3.35
963 17723 5.391449 GCTTTGTGTAGCTAAAAAGGTAGC 58.609 41.667 18.98 9.81 45.77 3.58
975 17743 0.453449 GCGAGCAAGCTTTGTGTAGC 60.453 55.000 0.00 0.00 41.53 3.58
976 17744 0.166814 GGCGAGCAAGCTTTGTGTAG 59.833 55.000 0.00 0.00 37.29 2.74
977 17745 0.533978 TGGCGAGCAAGCTTTGTGTA 60.534 50.000 0.00 0.00 37.29 2.90
994 17762 1.290955 CACCTGCAGCCATTGTTGG 59.709 57.895 8.66 0.00 46.66 3.77
1065 17833 3.797353 GGCCTCGGATTGCCCTGA 61.797 66.667 0.00 0.00 41.97 3.86
1071 17839 1.605710 CTGCATAAAGGCCTCGGATTG 59.394 52.381 5.23 0.86 0.00 2.67
1119 17891 1.197036 GTTTTAGCCTCCTCGTTGCAC 59.803 52.381 0.00 0.00 0.00 4.57
1127 17899 3.181439 ACTGCAGAAAGTTTTAGCCTCCT 60.181 43.478 23.35 0.00 0.00 3.69
1140 17912 4.162592 CAGGCACCACTGCAGAAA 57.837 55.556 23.35 0.00 46.28 2.52
1149 17921 2.124507 GAGGGTTGTAGCAGGCACCA 62.125 60.000 0.00 0.00 0.00 4.17
1159 17931 3.395630 GCCTTCCCGAGGGTTGTA 58.604 61.111 8.20 0.00 46.40 2.41
1180 17964 2.266554 CTCATCGAACAACTGCCTCTC 58.733 52.381 0.00 0.00 0.00 3.20
1189 17973 0.867746 GCAGTGCACTCATCGAACAA 59.132 50.000 18.64 0.00 0.00 2.83
1212 17996 4.814900 CTACTGCAGCAGGTACCG 57.185 61.111 26.38 5.89 35.51 4.02
1257 18041 1.228657 AACGCCTTTGAGCTTCGGTC 61.229 55.000 0.00 0.00 0.00 4.79
1262 18046 1.656441 CTGCAACGCCTTTGAGCTT 59.344 52.632 0.00 0.00 37.39 3.74
1294 18078 3.146104 AGCTTGGCAATCTGTGTAGTT 57.854 42.857 2.24 0.00 0.00 2.24
1303 18087 2.030007 TGTTAGTGCAAGCTTGGCAATC 60.030 45.455 27.10 13.93 43.91 2.67
1320 18104 7.967854 GTGTTGCACTGATTAAATATGCTGTTA 59.032 33.333 0.00 0.00 37.20 2.41
1321 18105 6.808212 GTGTTGCACTGATTAAATATGCTGTT 59.192 34.615 0.00 0.00 37.20 3.16
1322 18106 6.324819 GTGTTGCACTGATTAAATATGCTGT 58.675 36.000 0.00 0.00 37.20 4.40
1335 18119 1.057275 TACAGGGGGTGTTGCACTGA 61.057 55.000 5.35 0.00 40.94 3.41
1342 18126 1.072505 CGCTGTTACAGGGGGTGTT 59.927 57.895 19.77 0.00 40.94 3.32
1344 18128 1.375523 GTCGCTGTTACAGGGGGTG 60.376 63.158 25.34 3.31 43.27 4.61
1345 18129 1.535687 AGTCGCTGTTACAGGGGGT 60.536 57.895 25.34 12.69 43.27 4.95
1348 18132 0.602638 TTGCAGTCGCTGTTACAGGG 60.603 55.000 21.17 21.17 44.21 4.45
1428 23905 0.534877 ATGTCGGCACAAGCACAAGA 60.535 50.000 0.00 0.00 44.61 3.02
1429 23906 0.311790 AATGTCGGCACAAGCACAAG 59.688 50.000 0.00 0.00 44.61 3.16
1430 23907 0.310543 GAATGTCGGCACAAGCACAA 59.689 50.000 0.00 0.00 44.61 3.33
1431 23908 1.840630 CGAATGTCGGCACAAGCACA 61.841 55.000 0.00 0.00 44.61 4.57
1432 23909 1.154413 CGAATGTCGGCACAAGCAC 60.154 57.895 0.00 0.00 44.61 4.40
1433 23910 2.965147 GCGAATGTCGGCACAAGCA 61.965 57.895 0.00 0.00 44.61 3.91
1434 23911 2.202349 GCGAATGTCGGCACAAGC 60.202 61.111 0.00 0.00 40.84 4.01
1443 23920 2.316119 AAGCTTCAAACGCGAATGTC 57.684 45.000 15.93 5.44 0.00 3.06
1449 23926 4.947077 AACATAAAAAGCTTCAAACGCG 57.053 36.364 3.53 3.53 0.00 6.01
1451 23928 9.146270 CAATGAAAACATAAAAAGCTTCAAACG 57.854 29.630 0.00 0.00 0.00 3.60
1481 23958 3.738282 GTCATGGCGCATGTTTACAAAAA 59.262 39.130 10.83 0.00 41.98 1.94
1482 23959 3.312828 GTCATGGCGCATGTTTACAAAA 58.687 40.909 10.83 0.00 41.98 2.44
1483 23960 2.352225 GGTCATGGCGCATGTTTACAAA 60.352 45.455 10.83 0.00 41.98 2.83
1484 23961 1.201181 GGTCATGGCGCATGTTTACAA 59.799 47.619 10.83 0.00 41.98 2.41
1485 23962 0.808125 GGTCATGGCGCATGTTTACA 59.192 50.000 10.83 0.00 41.98 2.41
1486 23963 1.094785 AGGTCATGGCGCATGTTTAC 58.905 50.000 10.83 5.77 41.98 2.01
1515 23992 3.840666 GACCCATTCCTCCTATGCTATCA 59.159 47.826 0.00 0.00 0.00 2.15
1519 23996 2.196742 TGACCCATTCCTCCTATGCT 57.803 50.000 0.00 0.00 0.00 3.79
1602 24085 1.262417 GCGAAATTCCCTTTTCCCCA 58.738 50.000 0.00 0.00 33.02 4.96
1603 24086 1.262417 TGCGAAATTCCCTTTTCCCC 58.738 50.000 0.00 0.00 33.02 4.81
1604 24087 3.394674 TTTGCGAAATTCCCTTTTCCC 57.605 42.857 0.00 0.00 33.02 3.97
1605 24088 5.940192 AAATTTGCGAAATTCCCTTTTCC 57.060 34.783 7.13 0.00 40.05 3.13
1611 24099 6.532365 TTGTGTTAAATTTGCGAAATTCCC 57.468 33.333 0.00 0.00 40.05 3.97
1613 24101 8.272176 TCACATTGTGTTAAATTTGCGAAATTC 58.728 29.630 16.06 0.00 36.18 2.17
1620 24108 9.796062 CATAACTTCACATTGTGTTAAATTTGC 57.204 29.630 16.06 0.00 34.79 3.68
1625 24113 7.436673 GCAACCATAACTTCACATTGTGTTAAA 59.563 33.333 16.06 3.30 34.79 1.52
1633 24121 6.040842 ACAAAGAGCAACCATAACTTCACATT 59.959 34.615 0.00 0.00 0.00 2.71
1641 24129 5.453567 AAGGAACAAAGAGCAACCATAAC 57.546 39.130 0.00 0.00 0.00 1.89
1651 24141 5.669477 CTCTATGGAGGAAGGAACAAAGAG 58.331 45.833 0.00 0.00 36.03 2.85
1654 24144 3.846588 AGCTCTATGGAGGAAGGAACAAA 59.153 43.478 8.31 0.00 39.80 2.83
1665 24156 1.659954 GCACGCGAGCTCTATGGAG 60.660 63.158 21.52 0.86 42.18 3.86
1682 24173 6.048073 TGATGTATAAAAGCTGATGAACGC 57.952 37.500 0.00 0.00 0.00 4.84
1686 24177 7.870509 AAAGCTGATGTATAAAAGCTGATGA 57.129 32.000 0.00 0.00 45.04 2.92
1687 24178 7.375280 CGAAAAGCTGATGTATAAAAGCTGATG 59.625 37.037 0.00 0.00 45.04 3.07
1688 24179 7.280876 TCGAAAAGCTGATGTATAAAAGCTGAT 59.719 33.333 0.00 0.00 45.04 2.90
1690 24181 6.775088 TCGAAAAGCTGATGTATAAAAGCTG 58.225 36.000 0.00 0.00 45.04 4.24
1696 24191 7.047891 ACTTGGATCGAAAAGCTGATGTATAA 58.952 34.615 0.00 0.00 0.00 0.98
1710 24205 4.699735 ACACAAATGCATACTTGGATCGAA 59.300 37.500 14.12 0.00 31.96 3.71
1713 24208 5.314923 ACACACAAATGCATACTTGGATC 57.685 39.130 14.12 0.00 31.96 3.36
1744 24247 5.911280 CGTCACATTCCAGCATTATTTGATC 59.089 40.000 0.00 0.00 0.00 2.92
1748 24251 3.487376 CGCGTCACATTCCAGCATTATTT 60.487 43.478 0.00 0.00 0.00 1.40
1755 24258 2.434185 TCCGCGTCACATTCCAGC 60.434 61.111 4.92 0.00 0.00 4.85
1762 24265 2.230892 GACAAATGTCCGCGTCACA 58.769 52.632 4.92 8.10 39.07 3.58
1771 24274 2.380084 TAGACGGCAGGACAAATGTC 57.620 50.000 4.96 4.96 44.04 3.06
1772 24275 3.350219 AATAGACGGCAGGACAAATGT 57.650 42.857 0.00 0.00 0.00 2.71
1774 24277 4.589908 AGAAAATAGACGGCAGGACAAAT 58.410 39.130 0.00 0.00 0.00 2.32
1777 24280 4.404394 TGATAGAAAATAGACGGCAGGACA 59.596 41.667 0.00 0.00 0.00 4.02
1779 24282 5.808366 ATGATAGAAAATAGACGGCAGGA 57.192 39.130 0.00 0.00 0.00 3.86
1788 24291 7.995488 AGTCCCCTCAACAATGATAGAAAATAG 59.005 37.037 0.00 0.00 34.37 1.73
1791 24294 5.945784 CAGTCCCCTCAACAATGATAGAAAA 59.054 40.000 0.00 0.00 34.37 2.29
1797 24300 3.331889 AGAACAGTCCCCTCAACAATGAT 59.668 43.478 0.00 0.00 34.37 2.45
1810 24313 8.657729 GCTAGTTTACATAGAAAAGAACAGTCC 58.342 37.037 0.00 0.00 0.00 3.85
1811 24314 9.204570 TGCTAGTTTACATAGAAAAGAACAGTC 57.795 33.333 0.00 0.00 0.00 3.51
1823 24326 5.104900 AGGTCCACCTTGCTAGTTTACATAG 60.105 44.000 0.00 0.00 46.09 2.23
1826 24329 2.976882 AGGTCCACCTTGCTAGTTTACA 59.023 45.455 0.00 0.00 46.09 2.41
1827 24330 3.697619 AGGTCCACCTTGCTAGTTTAC 57.302 47.619 0.00 0.00 46.09 2.01
1855 24358 0.811281 ACTAAAAAGCATGCCCTCGC 59.189 50.000 15.66 0.00 0.00 5.03
1856 24359 1.812571 ACACTAAAAAGCATGCCCTCG 59.187 47.619 15.66 0.75 0.00 4.63
1857 24360 2.558359 ACACACTAAAAAGCATGCCCTC 59.442 45.455 15.66 0.00 0.00 4.30
1858 24361 2.597455 ACACACTAAAAAGCATGCCCT 58.403 42.857 15.66 0.00 0.00 5.19
1859 24362 3.317150 GAACACACTAAAAAGCATGCCC 58.683 45.455 15.66 0.00 0.00 5.36
1860 24363 3.317150 GGAACACACTAAAAAGCATGCC 58.683 45.455 15.66 0.00 0.00 4.40
1861 24364 2.979813 CGGAACACACTAAAAAGCATGC 59.020 45.455 10.51 10.51 0.00 4.06
1862 24365 2.979813 GCGGAACACACTAAAAAGCATG 59.020 45.455 0.00 0.00 0.00 4.06
1864 24367 2.017782 TGCGGAACACACTAAAAAGCA 58.982 42.857 0.00 0.00 0.00 3.91
1882 24385 3.118592 AGGATAACTTGGTAGCTGAGTGC 60.119 47.826 0.00 0.00 43.29 4.40
1883 24386 4.688021 GAGGATAACTTGGTAGCTGAGTG 58.312 47.826 0.00 0.00 0.00 3.51
1884 24387 3.381908 CGAGGATAACTTGGTAGCTGAGT 59.618 47.826 0.00 0.00 0.00 3.41
1886 24389 2.693591 CCGAGGATAACTTGGTAGCTGA 59.306 50.000 0.00 0.00 44.62 4.26
1887 24390 3.099267 CCGAGGATAACTTGGTAGCTG 57.901 52.381 0.00 0.00 44.62 4.24
1894 24397 3.868757 TCAGACACCGAGGATAACTTG 57.131 47.619 0.00 0.00 0.00 3.16
1896 24399 3.133003 CCAATCAGACACCGAGGATAACT 59.867 47.826 0.00 0.00 0.00 2.24
1897 24400 3.132289 TCCAATCAGACACCGAGGATAAC 59.868 47.826 0.00 0.00 0.00 1.89
1899 24402 2.693591 GTCCAATCAGACACCGAGGATA 59.306 50.000 0.00 0.00 36.73 2.59
1902 24405 0.458543 CGTCCAATCAGACACCGAGG 60.459 60.000 0.00 0.00 36.52 4.63
1905 24408 0.526211 TCTCGTCCAATCAGACACCG 59.474 55.000 0.00 0.00 36.52 4.94
1906 24409 2.544685 CATCTCGTCCAATCAGACACC 58.455 52.381 0.00 0.00 36.52 4.16
1907 24410 1.929836 GCATCTCGTCCAATCAGACAC 59.070 52.381 0.00 0.00 36.52 3.67
1908 24411 1.827344 AGCATCTCGTCCAATCAGACA 59.173 47.619 0.00 0.00 36.52 3.41
1910 24413 2.100418 CTCAGCATCTCGTCCAATCAGA 59.900 50.000 0.00 0.00 0.00 3.27
1911 24414 2.100418 TCTCAGCATCTCGTCCAATCAG 59.900 50.000 0.00 0.00 0.00 2.90
1912 24415 2.102578 TCTCAGCATCTCGTCCAATCA 58.897 47.619 0.00 0.00 0.00 2.57
1914 24417 3.109044 CATCTCAGCATCTCGTCCAAT 57.891 47.619 0.00 0.00 0.00 3.16
1915 24418 2.591571 CATCTCAGCATCTCGTCCAA 57.408 50.000 0.00 0.00 0.00 3.53
2167 24670 2.556840 TTATCCACCAGCAGCAGGCC 62.557 60.000 3.14 0.00 46.50 5.19
2168 24671 0.466922 ATTATCCACCAGCAGCAGGC 60.467 55.000 3.14 0.00 45.30 4.85
2169 24672 1.315690 CATTATCCACCAGCAGCAGG 58.684 55.000 1.37 1.37 0.00 4.85
2170 24673 1.315690 CCATTATCCACCAGCAGCAG 58.684 55.000 0.00 0.00 0.00 4.24
2172 24675 1.027357 CACCATTATCCACCAGCAGC 58.973 55.000 0.00 0.00 0.00 5.25
2173 24676 1.683943 CCACCATTATCCACCAGCAG 58.316 55.000 0.00 0.00 0.00 4.24
2176 24679 0.819259 CGCCCACCATTATCCACCAG 60.819 60.000 0.00 0.00 0.00 4.00
2177 24680 1.225983 CGCCCACCATTATCCACCA 59.774 57.895 0.00 0.00 0.00 4.17
2178 24681 1.528309 CCGCCCACCATTATCCACC 60.528 63.158 0.00 0.00 0.00 4.61
2179 24682 0.818040 GTCCGCCCACCATTATCCAC 60.818 60.000 0.00 0.00 0.00 4.02
2180 24683 1.275421 TGTCCGCCCACCATTATCCA 61.275 55.000 0.00 0.00 0.00 3.41
2181 24684 0.106918 TTGTCCGCCCACCATTATCC 60.107 55.000 0.00 0.00 0.00 2.59
2182 24685 1.308998 CTTGTCCGCCCACCATTATC 58.691 55.000 0.00 0.00 0.00 1.75
2183 24686 0.751643 GCTTGTCCGCCCACCATTAT 60.752 55.000 0.00 0.00 0.00 1.28
2184 24687 1.377987 GCTTGTCCGCCCACCATTA 60.378 57.895 0.00 0.00 0.00 1.90
2186 24689 3.650950 AGCTTGTCCGCCCACCAT 61.651 61.111 0.00 0.00 0.00 3.55
2187 24690 4.641645 CAGCTTGTCCGCCCACCA 62.642 66.667 0.00 0.00 0.00 4.17
2189 24692 4.643387 ACCAGCTTGTCCGCCCAC 62.643 66.667 0.00 0.00 0.00 4.61
2201 24704 2.298446 TCTCATCTATGCTAGCACCAGC 59.702 50.000 22.07 0.00 42.15 4.85
2203 24706 4.154942 TGATCTCATCTATGCTAGCACCA 58.845 43.478 22.07 10.23 0.00 4.17
2204 24707 4.797800 TGATCTCATCTATGCTAGCACC 57.202 45.455 22.07 0.16 0.00 5.01
2205 24708 4.620609 CGTTGATCTCATCTATGCTAGCAC 59.379 45.833 22.07 3.44 0.00 4.40
2206 24709 4.520492 TCGTTGATCTCATCTATGCTAGCA 59.480 41.667 21.85 21.85 0.00 3.49
2207 24710 5.053140 TCGTTGATCTCATCTATGCTAGC 57.947 43.478 8.10 8.10 0.00 3.42
2209 24712 6.000840 AGTCTCGTTGATCTCATCTATGCTA 58.999 40.000 0.00 0.00 0.00 3.49
2211 24714 5.119931 AGTCTCGTTGATCTCATCTATGC 57.880 43.478 0.00 0.00 0.00 3.14
2212 24715 6.303370 CGTAGTCTCGTTGATCTCATCTATG 58.697 44.000 0.00 0.00 0.00 2.23
2213 24716 5.410132 CCGTAGTCTCGTTGATCTCATCTAT 59.590 44.000 0.00 0.00 0.00 1.98
2215 24718 3.562141 CCGTAGTCTCGTTGATCTCATCT 59.438 47.826 0.00 0.00 0.00 2.90
2216 24719 3.304123 CCCGTAGTCTCGTTGATCTCATC 60.304 52.174 0.00 0.00 0.00 2.92
2217 24720 2.619177 CCCGTAGTCTCGTTGATCTCAT 59.381 50.000 0.00 0.00 0.00 2.90
2219 24722 1.334243 CCCCGTAGTCTCGTTGATCTC 59.666 57.143 0.00 0.00 0.00 2.75
2220 24723 1.390565 CCCCGTAGTCTCGTTGATCT 58.609 55.000 0.00 0.00 0.00 2.75
2221 24724 0.384669 CCCCCGTAGTCTCGTTGATC 59.615 60.000 0.00 0.00 0.00 2.92
2222 24725 1.673808 GCCCCCGTAGTCTCGTTGAT 61.674 60.000 0.00 0.00 0.00 2.57
2223 24726 2.345760 GCCCCCGTAGTCTCGTTGA 61.346 63.158 0.00 0.00 0.00 3.18
2224 24727 1.956629 ATGCCCCCGTAGTCTCGTTG 61.957 60.000 0.00 0.00 0.00 4.10
2225 24728 1.684734 ATGCCCCCGTAGTCTCGTT 60.685 57.895 0.00 0.00 0.00 3.85
2226 24729 2.043248 ATGCCCCCGTAGTCTCGT 60.043 61.111 0.00 0.00 0.00 4.18
2227 24730 1.672854 TTCATGCCCCCGTAGTCTCG 61.673 60.000 0.00 0.00 0.00 4.04
2228 24731 0.179081 GTTCATGCCCCCGTAGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
2229 24732 1.905512 GTTCATGCCCCCGTAGTCT 59.094 57.895 0.00 0.00 0.00 3.24
2230 24733 1.520787 CGTTCATGCCCCCGTAGTC 60.521 63.158 0.00 0.00 0.00 2.59
2231 24734 2.582436 CGTTCATGCCCCCGTAGT 59.418 61.111 0.00 0.00 0.00 2.73
2232 24735 2.203015 CCGTTCATGCCCCCGTAG 60.203 66.667 0.00 0.00 0.00 3.51
2233 24736 3.004354 ACCGTTCATGCCCCCGTA 61.004 61.111 0.00 0.00 0.00 4.02
2234 24737 4.715523 CACCGTTCATGCCCCCGT 62.716 66.667 0.00 0.00 0.00 5.28
2238 24741 2.813226 TAGTGCCACCGTTCATGCCC 62.813 60.000 0.00 0.00 0.00 5.36
2239 24742 1.369091 CTAGTGCCACCGTTCATGCC 61.369 60.000 0.00 0.00 0.00 4.40
2240 24743 1.369091 CCTAGTGCCACCGTTCATGC 61.369 60.000 0.00 0.00 0.00 4.06
2241 24744 1.369091 GCCTAGTGCCACCGTTCATG 61.369 60.000 0.00 0.00 0.00 3.07
2242 24745 1.078426 GCCTAGTGCCACCGTTCAT 60.078 57.895 0.00 0.00 0.00 2.57
2243 24746 2.046009 TTGCCTAGTGCCACCGTTCA 62.046 55.000 0.00 0.00 40.16 3.18
2244 24747 1.298859 CTTGCCTAGTGCCACCGTTC 61.299 60.000 0.00 0.00 40.16 3.95
2245 24748 1.302511 CTTGCCTAGTGCCACCGTT 60.303 57.895 0.00 0.00 40.16 4.44
2246 24749 1.764571 TTCTTGCCTAGTGCCACCGT 61.765 55.000 0.00 0.00 40.16 4.83
2247 24750 0.605319 TTTCTTGCCTAGTGCCACCG 60.605 55.000 0.00 0.00 40.16 4.94
2248 24751 1.269723 GTTTTCTTGCCTAGTGCCACC 59.730 52.381 0.00 0.00 40.16 4.61
2249 24752 1.953686 TGTTTTCTTGCCTAGTGCCAC 59.046 47.619 0.00 0.00 40.16 5.01
2250 24753 2.356665 TGTTTTCTTGCCTAGTGCCA 57.643 45.000 1.42 0.00 40.16 4.92
2251 24754 3.578688 CATTGTTTTCTTGCCTAGTGCC 58.421 45.455 1.42 0.00 40.16 5.01
2252 24755 3.005791 ACCATTGTTTTCTTGCCTAGTGC 59.994 43.478 0.00 0.00 41.77 4.40
2253 24756 4.853924 ACCATTGTTTTCTTGCCTAGTG 57.146 40.909 0.00 0.00 0.00 2.74
2254 24757 5.476945 CCTTACCATTGTTTTCTTGCCTAGT 59.523 40.000 0.00 0.00 0.00 2.57
2255 24758 5.105756 CCCTTACCATTGTTTTCTTGCCTAG 60.106 44.000 0.00 0.00 0.00 3.02
2256 24759 4.770010 CCCTTACCATTGTTTTCTTGCCTA 59.230 41.667 0.00 0.00 0.00 3.93
2257 24760 3.578282 CCCTTACCATTGTTTTCTTGCCT 59.422 43.478 0.00 0.00 0.00 4.75
2258 24761 3.306710 CCCCTTACCATTGTTTTCTTGCC 60.307 47.826 0.00 0.00 0.00 4.52
2259 24762 3.306710 CCCCCTTACCATTGTTTTCTTGC 60.307 47.826 0.00 0.00 0.00 4.01
2260 24763 4.156477 TCCCCCTTACCATTGTTTTCTTG 58.844 43.478 0.00 0.00 0.00 3.02
2261 24764 4.479156 TCCCCCTTACCATTGTTTTCTT 57.521 40.909 0.00 0.00 0.00 2.52
2262 24765 4.352893 CATCCCCCTTACCATTGTTTTCT 58.647 43.478 0.00 0.00 0.00 2.52
2263 24766 3.118775 GCATCCCCCTTACCATTGTTTTC 60.119 47.826 0.00 0.00 0.00 2.29
2264 24767 2.837591 GCATCCCCCTTACCATTGTTTT 59.162 45.455 0.00 0.00 0.00 2.43
2265 24768 2.466846 GCATCCCCCTTACCATTGTTT 58.533 47.619 0.00 0.00 0.00 2.83
2266 24769 1.684869 CGCATCCCCCTTACCATTGTT 60.685 52.381 0.00 0.00 0.00 2.83
2267 24770 0.106719 CGCATCCCCCTTACCATTGT 60.107 55.000 0.00 0.00 0.00 2.71
2268 24771 0.106719 ACGCATCCCCCTTACCATTG 60.107 55.000 0.00 0.00 0.00 2.82
2269 24772 1.513858 TACGCATCCCCCTTACCATT 58.486 50.000 0.00 0.00 0.00 3.16
2270 24773 1.513858 TTACGCATCCCCCTTACCAT 58.486 50.000 0.00 0.00 0.00 3.55
2271 24774 1.513858 ATTACGCATCCCCCTTACCA 58.486 50.000 0.00 0.00 0.00 3.25
2272 24775 2.651382 AATTACGCATCCCCCTTACC 57.349 50.000 0.00 0.00 0.00 2.85
2273 24776 3.072211 GCTAATTACGCATCCCCCTTAC 58.928 50.000 3.07 0.00 0.00 2.34
2274 24777 2.706723 TGCTAATTACGCATCCCCCTTA 59.293 45.455 5.75 0.00 31.40 2.69
2275 24778 1.493022 TGCTAATTACGCATCCCCCTT 59.507 47.619 5.75 0.00 31.40 3.95
2276 24779 1.136828 TGCTAATTACGCATCCCCCT 58.863 50.000 5.75 0.00 31.40 4.79
2277 24780 1.975660 TTGCTAATTACGCATCCCCC 58.024 50.000 9.45 0.00 37.22 5.40
2278 24781 2.949644 ACTTTGCTAATTACGCATCCCC 59.050 45.455 9.45 0.00 37.22 4.81
2279 24782 4.632538 AACTTTGCTAATTACGCATCCC 57.367 40.909 9.45 0.00 37.22 3.85
2280 24783 8.455598 TTTAAAACTTTGCTAATTACGCATCC 57.544 30.769 9.45 0.00 37.22 3.51
2287 24790 9.777575 GCCGACTATTTAAAACTTTGCTAATTA 57.222 29.630 0.00 0.00 0.00 1.40
2288 24791 8.520351 AGCCGACTATTTAAAACTTTGCTAATT 58.480 29.630 0.00 0.00 0.00 1.40
2289 24792 8.051901 AGCCGACTATTTAAAACTTTGCTAAT 57.948 30.769 0.00 0.00 0.00 1.73
2290 24793 7.443259 AGCCGACTATTTAAAACTTTGCTAA 57.557 32.000 0.00 0.00 0.00 3.09
2291 24794 8.726870 ATAGCCGACTATTTAAAACTTTGCTA 57.273 30.769 9.58 9.58 35.47 3.49
2292 24795 5.959618 AGCCGACTATTTAAAACTTTGCT 57.040 34.783 0.00 0.00 0.00 3.91
2293 24796 7.586664 GCTATAGCCGACTATTTAAAACTTTGC 59.413 37.037 14.13 0.00 39.81 3.68
2294 24797 8.989160 GCTATAGCCGACTATTTAAAACTTTG 57.011 34.615 14.13 0.00 39.81 2.77
2316 24819 0.685097 CAAAGGCTATAGCGGGGCTA 59.315 55.000 18.30 0.00 45.55 3.93
2317 24820 1.345715 ACAAAGGCTATAGCGGGGCT 61.346 55.000 18.30 7.01 43.26 5.19
2318 24821 1.148498 ACAAAGGCTATAGCGGGGC 59.852 57.895 18.30 4.68 43.26 5.80
2319 24822 0.468226 TCACAAAGGCTATAGCGGGG 59.532 55.000 18.30 9.10 43.26 5.73
2320 24823 1.871080 CTCACAAAGGCTATAGCGGG 58.129 55.000 18.30 5.97 43.26 6.13
2321 24824 1.202580 AGCTCACAAAGGCTATAGCGG 60.203 52.381 18.30 10.14 43.26 5.52
2322 24825 2.231215 AGCTCACAAAGGCTATAGCG 57.769 50.000 18.30 7.19 43.26 4.26
2323 24826 3.535561 TGAAGCTCACAAAGGCTATAGC 58.464 45.455 16.78 16.78 37.87 2.97
2324 24827 4.447054 CGATGAAGCTCACAAAGGCTATAG 59.553 45.833 0.00 0.00 37.87 1.31
2325 24828 4.371786 CGATGAAGCTCACAAAGGCTATA 58.628 43.478 0.00 0.00 37.87 1.31
2326 24829 3.201290 CGATGAAGCTCACAAAGGCTAT 58.799 45.455 0.00 0.00 37.87 2.97
2327 24830 2.621338 CGATGAAGCTCACAAAGGCTA 58.379 47.619 0.00 0.00 37.87 3.93
2328 24831 1.446907 CGATGAAGCTCACAAAGGCT 58.553 50.000 0.00 0.00 40.85 4.58
2329 24832 0.179179 GCGATGAAGCTCACAAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
2330 24833 1.446907 AGCGATGAAGCTCACAAAGG 58.553 50.000 0.00 0.00 45.67 3.11
2331 24834 4.668576 TTTAGCGATGAAGCTCACAAAG 57.331 40.909 0.00 0.00 45.67 2.77
2332 24835 4.694982 TGATTTAGCGATGAAGCTCACAAA 59.305 37.500 0.00 0.00 45.67 2.83
2333 24836 4.252878 TGATTTAGCGATGAAGCTCACAA 58.747 39.130 0.00 0.00 45.67 3.33
2334 24837 3.860641 TGATTTAGCGATGAAGCTCACA 58.139 40.909 0.00 0.00 45.67 3.58
2335 24838 4.864916 TTGATTTAGCGATGAAGCTCAC 57.135 40.909 0.00 0.00 45.67 3.51
2336 24839 4.260907 GCATTGATTTAGCGATGAAGCTCA 60.261 41.667 0.00 0.00 45.67 4.26
2337 24840 4.217497 GCATTGATTTAGCGATGAAGCTC 58.783 43.478 0.00 0.00 45.67 4.09
2339 24842 3.727723 GTGCATTGATTTAGCGATGAAGC 59.272 43.478 0.00 0.00 32.45 3.86
2340 24843 5.165911 AGTGCATTGATTTAGCGATGAAG 57.834 39.130 0.00 0.00 32.45 3.02
2341 24844 5.565592 AAGTGCATTGATTTAGCGATGAA 57.434 34.783 0.00 0.00 32.45 2.57
2342 24845 5.565592 AAAGTGCATTGATTTAGCGATGA 57.434 34.783 0.00 0.00 32.45 2.92
2343 24846 7.273164 TGTTAAAAGTGCATTGATTTAGCGATG 59.727 33.333 0.00 0.00 33.63 3.84
2344 24847 7.273381 GTGTTAAAAGTGCATTGATTTAGCGAT 59.727 33.333 0.00 0.00 0.00 4.58
2345 24848 6.580791 GTGTTAAAAGTGCATTGATTTAGCGA 59.419 34.615 0.00 0.00 0.00 4.93
2346 24849 6.582295 AGTGTTAAAAGTGCATTGATTTAGCG 59.418 34.615 0.00 0.00 0.00 4.26
2347 24850 7.873739 AGTGTTAAAAGTGCATTGATTTAGC 57.126 32.000 0.00 0.00 0.00 3.09
2352 24855 9.979578 TCAATTAAGTGTTAAAAGTGCATTGAT 57.020 25.926 2.43 0.00 0.00 2.57
2353 24856 9.809096 TTCAATTAAGTGTTAAAAGTGCATTGA 57.191 25.926 2.43 4.47 0.00 2.57
2361 24864 9.777843 GCGTCATTTTCAATTAAGTGTTAAAAG 57.222 29.630 2.43 3.28 0.00 2.27
2362 24865 9.522804 AGCGTCATTTTCAATTAAGTGTTAAAA 57.477 25.926 2.43 4.17 0.00 1.52
2367 24870 9.988350 CTATTAGCGTCATTTTCAATTAAGTGT 57.012 29.630 2.43 0.00 0.00 3.55
2368 24871 8.947940 GCTATTAGCGTCATTTTCAATTAAGTG 58.052 33.333 0.00 0.00 0.00 3.16
2369 24872 8.129211 GGCTATTAGCGTCATTTTCAATTAAGT 58.871 33.333 9.50 0.00 43.62 2.24
2370 24873 7.591426 GGGCTATTAGCGTCATTTTCAATTAAG 59.409 37.037 9.50 0.00 43.62 1.85
2371 24874 7.422399 GGGCTATTAGCGTCATTTTCAATTAA 58.578 34.615 9.50 0.00 43.62 1.40
2372 24875 6.293190 CGGGCTATTAGCGTCATTTTCAATTA 60.293 38.462 9.50 0.00 43.62 1.40
2373 24876 5.505654 CGGGCTATTAGCGTCATTTTCAATT 60.506 40.000 9.50 0.00 43.62 2.32
2374 24877 4.024048 CGGGCTATTAGCGTCATTTTCAAT 60.024 41.667 9.50 0.00 43.62 2.57
2375 24878 3.311322 CGGGCTATTAGCGTCATTTTCAA 59.689 43.478 9.50 0.00 43.62 2.69
2376 24879 2.869801 CGGGCTATTAGCGTCATTTTCA 59.130 45.455 9.50 0.00 43.62 2.69
2377 24880 2.870411 ACGGGCTATTAGCGTCATTTTC 59.130 45.455 9.50 0.00 43.62 2.29
2378 24881 2.914059 ACGGGCTATTAGCGTCATTTT 58.086 42.857 9.50 0.00 43.62 1.82
2379 24882 2.614829 ACGGGCTATTAGCGTCATTT 57.385 45.000 9.50 0.00 43.62 2.32
2380 24883 2.614829 AACGGGCTATTAGCGTCATT 57.385 45.000 9.50 0.00 43.62 2.57
2381 24884 3.955650 ATAACGGGCTATTAGCGTCAT 57.044 42.857 9.50 0.00 43.62 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.