Multiple sequence alignment - TraesCS3B01G008900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G008900 chr3B 100.000 2543 0 0 1 2543 4335725 4333183 0.000000e+00 4697.0
1 TraesCS3B01G008900 chr3B 90.872 734 54 10 1025 1754 4407111 4406387 0.000000e+00 972.0
2 TraesCS3B01G008900 chr3B 84.585 1012 80 43 1 973 4408084 4407110 0.000000e+00 935.0
3 TraesCS3B01G008900 chr3B 96.089 179 5 2 2364 2541 461200407 461200584 8.900000e-75 291.0
4 TraesCS3B01G008900 chr3A 91.992 2123 100 37 1 2077 1902880 1904978 0.000000e+00 2915.0
5 TraesCS3B01G008900 chr3A 90.535 243 10 2 2082 2311 1905076 1905318 2.460000e-80 309.0
6 TraesCS3B01G008900 chr3D 98.190 1160 17 3 1 1156 2163956 2162797 0.000000e+00 2023.0
7 TraesCS3B01G008900 chr3D 92.989 813 47 9 1152 1957 2152463 2151654 0.000000e+00 1177.0
8 TraesCS3B01G008900 chr3D 90.741 54 2 3 1646 1697 568043556 568043504 4.540000e-08 69.4
9 TraesCS3B01G008900 chr3D 84.127 63 10 0 1127 1189 1893109 1893171 7.600000e-06 62.1
10 TraesCS3B01G008900 chr3D 97.143 35 0 1 1666 1699 66336794 66336828 9.830000e-05 58.4
11 TraesCS3B01G008900 chrUn 95.433 1073 37 5 470 1541 351354272 351353211 0.000000e+00 1700.0
12 TraesCS3B01G008900 chrUn 91.530 366 26 2 1713 2077 351355349 351354988 1.360000e-137 499.0
13 TraesCS3B01G008900 chrUn 90.535 243 10 2 2082 2311 351354890 351354648 2.460000e-80 309.0
14 TraesCS3B01G008900 chrUn 89.474 57 4 2 1644 1698 42248244 42248300 1.260000e-08 71.3
15 TraesCS3B01G008900 chr5B 97.605 167 4 0 2368 2534 276913960 276913794 1.150000e-73 287.0
16 TraesCS3B01G008900 chr5B 93.956 182 9 2 2363 2543 124898874 124898694 8.960000e-70 274.0
17 TraesCS3B01G008900 chr1A 97.059 170 5 0 2366 2535 526575520 526575689 1.150000e-73 287.0
18 TraesCS3B01G008900 chr1A 97.024 168 5 0 2367 2534 328799032 328799199 1.490000e-72 283.0
19 TraesCS3B01G008900 chr1A 87.500 64 5 2 1640 1700 11956681 11956618 1.260000e-08 71.3
20 TraesCS3B01G008900 chr2A 97.041 169 5 0 2363 2531 632622108 632622276 4.140000e-73 285.0
21 TraesCS3B01G008900 chr1B 97.041 169 4 1 2364 2531 67053880 67054048 1.490000e-72 283.0
22 TraesCS3B01G008900 chr4A 95.954 173 6 1 2363 2535 669439499 669439670 1.930000e-71 279.0
23 TraesCS3B01G008900 chr4A 95.455 176 6 2 2362 2535 735482008 735481833 1.930000e-71 279.0
24 TraesCS3B01G008900 chr7D 87.143 70 5 4 1629 1697 58890655 58890721 2.710000e-10 76.8
25 TraesCS3B01G008900 chr5D 97.500 40 1 0 1656 1695 519697047 519697086 4.540000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G008900 chr3B 4333183 4335725 2542 True 4697.0 4697 100.000000 1 2543 1 chr3B.!!$R1 2542
1 TraesCS3B01G008900 chr3B 4406387 4408084 1697 True 953.5 972 87.728500 1 1754 2 chr3B.!!$R2 1753
2 TraesCS3B01G008900 chr3A 1902880 1905318 2438 False 1612.0 2915 91.263500 1 2311 2 chr3A.!!$F1 2310
3 TraesCS3B01G008900 chr3D 2162797 2163956 1159 True 2023.0 2023 98.190000 1 1156 1 chr3D.!!$R2 1155
4 TraesCS3B01G008900 chr3D 2151654 2152463 809 True 1177.0 1177 92.989000 1152 1957 1 chr3D.!!$R1 805
5 TraesCS3B01G008900 chrUn 351353211 351355349 2138 True 836.0 1700 92.499333 470 2311 3 chrUn.!!$R1 1841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 280 0.179215 GCCGAAAGAGAACATGCACG 60.179 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2543 0.793861 CGATGTGGTACCAAACGGTG 59.206 55.0 18.31 0.72 37.35 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 280 0.179215 GCCGAAAGAGAACATGCACG 60.179 55.000 0.00 0.00 0.00 5.34
247 282 2.333926 CCGAAAGAGAACATGCACGTA 58.666 47.619 0.00 0.00 0.00 3.57
1191 1809 0.107508 CATCCACCGAGCATGACCTT 60.108 55.000 0.00 0.00 0.00 3.50
1350 1968 4.194720 GACCTCATCGCCGACGCT 62.195 66.667 0.00 0.00 39.84 5.07
1406 2024 3.499918 GTGTTGAAGATTGTGTCTGAGGG 59.500 47.826 0.00 0.00 37.23 4.30
1465 2083 0.322546 GATCCACAAAACGCCTCCCT 60.323 55.000 0.00 0.00 0.00 4.20
1503 2121 4.373116 ACGACGGAGCATTGCGGT 62.373 61.111 2.38 2.91 43.03 5.68
1588 2206 6.398918 GCTTGTCTGTTCCTCTCAGTAATAA 58.601 40.000 0.00 0.00 34.86 1.40
1591 2209 9.442047 CTTGTCTGTTCCTCTCAGTAATAAATT 57.558 33.333 0.00 0.00 34.86 1.82
1825 2473 2.574399 GGTCCAGTCTCGTGCTCC 59.426 66.667 0.00 0.00 0.00 4.70
1834 2482 2.755876 TCGTGCTCCTCAGGCGAT 60.756 61.111 0.00 0.00 0.00 4.58
1895 2543 5.091261 CCCTAGGGCATACAAGACATATC 57.909 47.826 16.90 0.00 0.00 1.63
1981 2629 1.165284 TGTGCTCTGTTTGCATCGCA 61.165 50.000 0.00 0.00 42.69 5.10
2009 2657 4.261783 GCTTTTCTTTCCTAGCAAGCTGTT 60.262 41.667 4.53 0.00 37.12 3.16
2021 2669 4.365723 AGCAAGCTGTTGAACAATTTCAG 58.634 39.130 0.00 0.00 42.79 3.02
2022 2670 3.492011 GCAAGCTGTTGAACAATTTCAGG 59.508 43.478 0.00 0.00 42.79 3.86
2023 2671 4.737352 GCAAGCTGTTGAACAATTTCAGGA 60.737 41.667 0.00 0.00 42.79 3.86
2024 2672 5.350633 CAAGCTGTTGAACAATTTCAGGAA 58.649 37.500 0.00 0.00 42.79 3.36
2025 2673 5.596836 AGCTGTTGAACAATTTCAGGAAA 57.403 34.783 0.00 0.00 42.79 3.13
2059 2707 5.909477 TGAATTTTCCCAGATCATCAATGC 58.091 37.500 0.00 0.00 0.00 3.56
2077 2725 5.870433 TCAATGCCATGATGAAAACACATTC 59.130 36.000 0.00 0.00 0.00 2.67
2078 2726 3.835779 TGCCATGATGAAAACACATTCG 58.164 40.909 0.00 0.00 31.80 3.34
2079 2727 3.255395 TGCCATGATGAAAACACATTCGT 59.745 39.130 0.00 0.00 31.80 3.85
2080 2728 4.236935 GCCATGATGAAAACACATTCGTT 58.763 39.130 0.00 0.00 31.80 3.85
2117 2858 8.527567 AAAAGTTCGTTGACAAAAATTCAGAA 57.472 26.923 0.00 0.00 0.00 3.02
2182 2936 4.568359 CAGTTTCGGTCTCAACATGATAGG 59.432 45.833 0.00 0.00 0.00 2.57
2196 2950 6.636454 ACATGATAGGGTTGTTCCTTTCTA 57.364 37.500 0.00 0.00 38.30 2.10
2313 3067 9.871238 ATACACTTCGTATCAACTTTCATTAGT 57.129 29.630 0.00 0.00 35.87 2.24
2315 3069 9.701098 ACACTTCGTATCAACTTTCATTAGTAA 57.299 29.630 0.00 0.00 0.00 2.24
2319 3073 9.715121 TTCGTATCAACTTTCATTAGTAAAGGT 57.285 29.630 0.00 0.00 38.09 3.50
2352 3106 9.787435 ATTTGTAGTTGGTACTTCATTAGTTGA 57.213 29.630 0.00 0.00 38.33 3.18
2353 3107 8.597662 TTGTAGTTGGTACTTCATTAGTTGAC 57.402 34.615 0.00 0.00 38.33 3.18
2354 3108 7.959175 TGTAGTTGGTACTTCATTAGTTGACT 58.041 34.615 0.00 0.00 38.33 3.41
2355 3109 7.870954 TGTAGTTGGTACTTCATTAGTTGACTG 59.129 37.037 0.00 0.00 38.33 3.51
2356 3110 6.827727 AGTTGGTACTTCATTAGTTGACTGT 58.172 36.000 0.00 0.00 38.33 3.55
2357 3111 6.929606 AGTTGGTACTTCATTAGTTGACTGTC 59.070 38.462 0.00 0.00 38.33 3.51
2358 3112 6.665992 TGGTACTTCATTAGTTGACTGTCT 57.334 37.500 9.51 0.00 38.33 3.41
2359 3113 6.688578 TGGTACTTCATTAGTTGACTGTCTC 58.311 40.000 9.51 2.72 38.33 3.36
2360 3114 6.100668 GGTACTTCATTAGTTGACTGTCTCC 58.899 44.000 9.51 0.00 38.33 3.71
2361 3115 5.808366 ACTTCATTAGTTGACTGTCTCCA 57.192 39.130 9.51 0.00 31.29 3.86
2362 3116 6.365970 ACTTCATTAGTTGACTGTCTCCAT 57.634 37.500 9.51 0.00 31.29 3.41
2363 3117 6.773638 ACTTCATTAGTTGACTGTCTCCATT 58.226 36.000 9.51 0.00 31.29 3.16
2364 3118 7.227156 ACTTCATTAGTTGACTGTCTCCATTT 58.773 34.615 9.51 0.00 31.29 2.32
2365 3119 8.375506 ACTTCATTAGTTGACTGTCTCCATTTA 58.624 33.333 9.51 0.00 31.29 1.40
2366 3120 9.388506 CTTCATTAGTTGACTGTCTCCATTTAT 57.611 33.333 9.51 0.00 32.84 1.40
2367 3121 9.739276 TTCATTAGTTGACTGTCTCCATTTATT 57.261 29.630 9.51 0.00 32.84 1.40
2371 3125 9.871238 TTAGTTGACTGTCTCCATTTATTACTC 57.129 33.333 9.51 0.00 0.00 2.59
2372 3126 7.331791 AGTTGACTGTCTCCATTTATTACTCC 58.668 38.462 9.51 0.00 0.00 3.85
2373 3127 6.235231 TGACTGTCTCCATTTATTACTCCC 57.765 41.667 9.51 0.00 0.00 4.30
2374 3128 5.964477 TGACTGTCTCCATTTATTACTCCCT 59.036 40.000 9.51 0.00 0.00 4.20
2375 3129 6.098409 TGACTGTCTCCATTTATTACTCCCTC 59.902 42.308 9.51 0.00 0.00 4.30
2376 3130 5.367060 ACTGTCTCCATTTATTACTCCCTCC 59.633 44.000 0.00 0.00 0.00 4.30
2377 3131 4.344102 TGTCTCCATTTATTACTCCCTCCG 59.656 45.833 0.00 0.00 0.00 4.63
2378 3132 4.344390 GTCTCCATTTATTACTCCCTCCGT 59.656 45.833 0.00 0.00 0.00 4.69
2379 3133 4.966805 TCTCCATTTATTACTCCCTCCGTT 59.033 41.667 0.00 0.00 0.00 4.44
2380 3134 5.070047 TCTCCATTTATTACTCCCTCCGTTC 59.930 44.000 0.00 0.00 0.00 3.95
2381 3135 4.102054 TCCATTTATTACTCCCTCCGTTCC 59.898 45.833 0.00 0.00 0.00 3.62
2382 3136 4.386711 CATTTATTACTCCCTCCGTTCCC 58.613 47.826 0.00 0.00 0.00 3.97
2383 3137 2.852714 TATTACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2384 3138 1.961133 ATTACTCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2385 3139 1.732117 TTACTCCCTCCGTTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
2386 3140 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
2387 3141 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2388 3142 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2389 3143 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2390 3144 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
2391 3145 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
2392 3146 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
2393 3147 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2394 3148 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2395 3149 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2396 3150 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
2397 3151 4.758165 TCCGTTCCCAAATACTTGTCTTTC 59.242 41.667 0.00 0.00 0.00 2.62
2398 3152 4.760204 CCGTTCCCAAATACTTGTCTTTCT 59.240 41.667 0.00 0.00 0.00 2.52
2399 3153 5.935789 CCGTTCCCAAATACTTGTCTTTCTA 59.064 40.000 0.00 0.00 0.00 2.10
2400 3154 6.092259 CCGTTCCCAAATACTTGTCTTTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
2401 3155 6.092259 CGTTCCCAAATACTTGTCTTTCTAGG 59.908 42.308 0.00 0.00 0.00 3.02
2402 3156 5.497474 TCCCAAATACTTGTCTTTCTAGGC 58.503 41.667 0.00 0.00 0.00 3.93
2403 3157 5.013704 TCCCAAATACTTGTCTTTCTAGGCA 59.986 40.000 0.00 0.00 33.22 4.75
2404 3158 5.888161 CCCAAATACTTGTCTTTCTAGGCAT 59.112 40.000 0.00 0.00 35.56 4.40
2405 3159 6.378280 CCCAAATACTTGTCTTTCTAGGCATT 59.622 38.462 0.00 0.00 35.56 3.56
2406 3160 7.093771 CCCAAATACTTGTCTTTCTAGGCATTT 60.094 37.037 0.00 0.00 35.56 2.32
2407 3161 7.970614 CCAAATACTTGTCTTTCTAGGCATTTC 59.029 37.037 0.00 0.00 35.56 2.17
2408 3162 8.514594 CAAATACTTGTCTTTCTAGGCATTTCA 58.485 33.333 0.00 0.00 35.56 2.69
2409 3163 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2410 3164 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
2411 3165 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
2412 3166 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
2413 3167 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
2414 3168 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
2415 3169 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
2416 3170 6.151817 GTCTTTCTAGGCATTTCAAATGGACT 59.848 38.462 12.14 3.08 0.00 3.85
2417 3171 6.375455 TCTTTCTAGGCATTTCAAATGGACTC 59.625 38.462 12.14 0.00 0.00 3.36
2418 3172 5.178096 TCTAGGCATTTCAAATGGACTCA 57.822 39.130 12.14 0.00 0.00 3.41
2419 3173 5.569355 TCTAGGCATTTCAAATGGACTCAA 58.431 37.500 12.14 0.00 0.00 3.02
2420 3174 4.525912 AGGCATTTCAAATGGACTCAAC 57.474 40.909 12.14 0.00 0.00 3.18
2421 3175 3.896888 AGGCATTTCAAATGGACTCAACA 59.103 39.130 12.14 0.00 0.00 3.33
2422 3176 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
2423 3177 5.716228 AGGCATTTCAAATGGACTCAACATA 59.284 36.000 12.14 0.00 0.00 2.29
2424 3178 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
2425 3179 5.512788 GCATTTCAAATGGACTCAACATACG 59.487 40.000 12.14 0.00 0.00 3.06
2426 3180 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
2427 3181 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
2428 3182 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
2429 3183 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
2431 3185 5.607939 AATGGACTCAACATACGGATGTA 57.392 39.130 15.10 0.00 45.93 2.29
2432 3186 4.380841 TGGACTCAACATACGGATGTAC 57.619 45.455 15.10 3.73 45.93 2.90
2433 3187 3.764972 TGGACTCAACATACGGATGTACA 59.235 43.478 15.10 2.32 45.93 2.90
2434 3188 4.404394 TGGACTCAACATACGGATGTACAT 59.596 41.667 15.10 8.43 45.93 2.29
2435 3189 5.595133 TGGACTCAACATACGGATGTACATA 59.405 40.000 15.10 0.00 45.93 2.29
2436 3190 6.150318 GGACTCAACATACGGATGTACATAG 58.850 44.000 15.10 11.28 45.93 2.23
2437 3191 6.016527 GGACTCAACATACGGATGTACATAGA 60.017 42.308 15.10 6.65 45.93 1.98
2438 3192 6.736123 ACTCAACATACGGATGTACATAGAC 58.264 40.000 15.10 1.53 45.93 2.59
2439 3193 6.320418 ACTCAACATACGGATGTACATAGACA 59.680 38.462 15.10 1.12 45.93 3.41
2440 3194 7.014326 ACTCAACATACGGATGTACATAGACAT 59.986 37.037 15.10 0.00 45.93 3.06
2441 3195 8.398878 TCAACATACGGATGTACATAGACATA 57.601 34.615 15.10 0.00 45.93 2.29
2442 3196 9.020731 TCAACATACGGATGTACATAGACATAT 57.979 33.333 15.10 0.00 45.93 1.78
2443 3197 9.639601 CAACATACGGATGTACATAGACATATT 57.360 33.333 15.10 0.00 45.93 1.28
2469 3223 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2470 3224 5.536554 AGTGTAGATTCACTCATTTTGCG 57.463 39.130 0.00 0.00 44.07 4.85
2471 3225 4.091424 GTGTAGATTCACTCATTTTGCGC 58.909 43.478 0.00 0.00 35.68 6.09
2472 3226 2.927553 AGATTCACTCATTTTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
2473 3227 1.131126 AGATTCACTCATTTTGCGCCG 59.869 47.619 4.18 0.00 0.00 6.46
2474 3228 0.881118 ATTCACTCATTTTGCGCCGT 59.119 45.000 4.18 0.00 0.00 5.68
2475 3229 1.514003 TTCACTCATTTTGCGCCGTA 58.486 45.000 4.18 0.00 0.00 4.02
2476 3230 1.732941 TCACTCATTTTGCGCCGTAT 58.267 45.000 4.18 0.00 0.00 3.06
2477 3231 1.396648 TCACTCATTTTGCGCCGTATG 59.603 47.619 4.18 5.63 0.00 2.39
2478 3232 1.130373 CACTCATTTTGCGCCGTATGT 59.870 47.619 4.18 0.00 0.00 2.29
2479 3233 2.350192 CACTCATTTTGCGCCGTATGTA 59.650 45.455 4.18 0.00 0.00 2.29
2480 3234 2.607635 ACTCATTTTGCGCCGTATGTAG 59.392 45.455 4.18 7.56 0.00 2.74
2481 3235 2.607635 CTCATTTTGCGCCGTATGTAGT 59.392 45.455 4.18 0.00 0.00 2.73
2482 3236 2.605818 TCATTTTGCGCCGTATGTAGTC 59.394 45.455 4.18 0.00 0.00 2.59
2483 3237 2.081725 TTTTGCGCCGTATGTAGTCA 57.918 45.000 4.18 0.00 0.00 3.41
2484 3238 1.352114 TTTGCGCCGTATGTAGTCAC 58.648 50.000 4.18 0.00 0.00 3.67
2485 3239 0.528924 TTGCGCCGTATGTAGTCACT 59.471 50.000 4.18 0.00 0.00 3.41
2486 3240 0.528924 TGCGCCGTATGTAGTCACTT 59.471 50.000 4.18 0.00 0.00 3.16
2487 3241 0.921347 GCGCCGTATGTAGTCACTTG 59.079 55.000 0.00 0.00 0.00 3.16
2488 3242 1.734707 GCGCCGTATGTAGTCACTTGT 60.735 52.381 0.00 0.00 0.00 3.16
2489 3243 2.602878 CGCCGTATGTAGTCACTTGTT 58.397 47.619 0.00 0.00 0.00 2.83
2490 3244 3.761657 CGCCGTATGTAGTCACTTGTTA 58.238 45.455 0.00 0.00 0.00 2.41
2491 3245 4.168014 CGCCGTATGTAGTCACTTGTTAA 58.832 43.478 0.00 0.00 0.00 2.01
2492 3246 4.622313 CGCCGTATGTAGTCACTTGTTAAA 59.378 41.667 0.00 0.00 0.00 1.52
2493 3247 5.118971 CGCCGTATGTAGTCACTTGTTAAAA 59.881 40.000 0.00 0.00 0.00 1.52
2494 3248 6.183360 CGCCGTATGTAGTCACTTGTTAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
2495 3249 7.178074 GCCGTATGTAGTCACTTGTTAAAATC 58.822 38.462 0.00 0.00 0.00 2.17
2496 3250 7.064253 GCCGTATGTAGTCACTTGTTAAAATCT 59.936 37.037 0.00 0.00 0.00 2.40
2497 3251 8.592998 CCGTATGTAGTCACTTGTTAAAATCTC 58.407 37.037 0.00 0.00 0.00 2.75
2498 3252 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
2522 3276 9.582431 TCTAGAAAGACAAGTATTTATGAACGG 57.418 33.333 0.00 0.00 0.00 4.44
2523 3277 9.582431 CTAGAAAGACAAGTATTTATGAACGGA 57.418 33.333 0.00 0.00 0.00 4.69
2524 3278 8.480643 AGAAAGACAAGTATTTATGAACGGAG 57.519 34.615 0.00 0.00 0.00 4.63
2525 3279 7.549488 AGAAAGACAAGTATTTATGAACGGAGG 59.451 37.037 0.00 0.00 0.00 4.30
2526 3280 5.671493 AGACAAGTATTTATGAACGGAGGG 58.329 41.667 0.00 0.00 0.00 4.30
2527 3281 5.424252 AGACAAGTATTTATGAACGGAGGGA 59.576 40.000 0.00 0.00 0.00 4.20
2528 3282 5.671493 ACAAGTATTTATGAACGGAGGGAG 58.329 41.667 0.00 0.00 0.00 4.30
2529 3283 5.189145 ACAAGTATTTATGAACGGAGGGAGT 59.811 40.000 0.00 0.00 0.00 3.85
2530 3284 6.381994 ACAAGTATTTATGAACGGAGGGAGTA 59.618 38.462 0.00 0.00 0.00 2.59
2531 3285 6.402456 AGTATTTATGAACGGAGGGAGTAC 57.598 41.667 0.00 0.00 0.00 2.73
2532 3286 5.895534 AGTATTTATGAACGGAGGGAGTACA 59.104 40.000 0.00 0.00 0.00 2.90
2533 3287 5.888982 ATTTATGAACGGAGGGAGTACAT 57.111 39.130 0.00 0.00 0.00 2.29
2534 3288 5.687166 TTTATGAACGGAGGGAGTACATT 57.313 39.130 0.00 0.00 0.00 2.71
2535 3289 3.821421 ATGAACGGAGGGAGTACATTC 57.179 47.619 0.00 0.00 0.00 2.67
2536 3290 2.816411 TGAACGGAGGGAGTACATTCT 58.184 47.619 0.00 0.00 0.00 2.40
2537 3291 3.170717 TGAACGGAGGGAGTACATTCTT 58.829 45.455 0.00 0.00 0.00 2.52
2538 3292 3.056107 TGAACGGAGGGAGTACATTCTTG 60.056 47.826 0.00 0.00 0.00 3.02
2539 3293 1.831736 ACGGAGGGAGTACATTCTTGG 59.168 52.381 0.00 0.00 0.00 3.61
2540 3294 2.108168 CGGAGGGAGTACATTCTTGGA 58.892 52.381 0.00 0.00 0.00 3.53
2541 3295 2.500098 CGGAGGGAGTACATTCTTGGAA 59.500 50.000 0.00 0.00 0.00 3.53
2542 3296 3.679083 CGGAGGGAGTACATTCTTGGAAC 60.679 52.174 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 212 1.680338 TAGCATGAGAGCTCGCTACA 58.320 50.000 18.64 12.64 45.26 2.74
245 280 0.166814 CCAGCGCTTCAAGCACTTAC 59.833 55.000 7.50 0.00 42.58 2.34
247 282 1.103398 AACCAGCGCTTCAAGCACTT 61.103 50.000 7.50 0.00 42.58 3.16
254 289 0.321671 AGCTCTTAACCAGCGCTTCA 59.678 50.000 7.50 0.00 40.99 3.02
376 412 9.072294 ACGACTAAAAGACAAAAAGAACAAATG 57.928 29.630 0.00 0.00 0.00 2.32
900 1518 2.424601 CGGCACATGTGAGGAAATCATT 59.575 45.455 29.80 0.00 40.92 2.57
901 1519 2.019249 CGGCACATGTGAGGAAATCAT 58.981 47.619 29.80 0.00 40.92 2.45
902 1520 1.271325 ACGGCACATGTGAGGAAATCA 60.271 47.619 29.80 0.00 34.79 2.57
903 1521 1.131126 CACGGCACATGTGAGGAAATC 59.869 52.381 29.80 9.33 0.00 2.17
904 1522 1.167851 CACGGCACATGTGAGGAAAT 58.832 50.000 29.80 4.92 0.00 2.17
905 1523 0.179032 ACACGGCACATGTGAGGAAA 60.179 50.000 29.80 0.00 28.67 3.13
906 1524 0.682292 TACACGGCACATGTGAGGAA 59.318 50.000 29.80 6.02 33.65 3.36
912 1530 8.914011 ACATATCTATATATACACGGCACATGT 58.086 33.333 0.00 0.00 39.16 3.21
1191 1809 1.904378 TTGCAGAGCAATGCTGGCA 60.904 52.632 22.15 22.15 43.99 4.92
1406 2024 1.069935 GTATCTCCTGCGCCCTTCC 59.930 63.158 4.18 0.00 0.00 3.46
1459 2077 1.077212 CCATGTCAGCCAAGGGAGG 60.077 63.158 0.00 0.00 0.00 4.30
1465 2083 1.003839 GACGGTCCATGTCAGCCAA 60.004 57.895 0.00 0.00 36.37 4.52
1470 2088 0.891904 TCGTCTGACGGTCCATGTCA 60.892 55.000 27.69 4.43 42.81 3.58
1807 2453 2.574399 GAGCACGAGACTGGACCC 59.426 66.667 0.00 0.00 0.00 4.46
1820 2466 1.610363 CTAGTATCGCCTGAGGAGCA 58.390 55.000 0.65 0.00 0.00 4.26
1825 2473 2.621055 ACAGAAGCTAGTATCGCCTGAG 59.379 50.000 0.00 0.00 0.00 3.35
1834 2482 3.200483 TCGTGCGATACAGAAGCTAGTA 58.800 45.455 0.00 0.00 0.00 1.82
1895 2543 0.793861 CGATGTGGTACCAAACGGTG 59.206 55.000 18.31 0.72 37.35 4.94
1981 2629 4.910458 TGCTAGGAAAGAAAAGCCTACT 57.090 40.909 0.00 0.00 33.99 2.57
2044 2692 2.871453 TCATGGCATTGATGATCTGGG 58.129 47.619 0.00 0.00 0.00 4.45
2059 2707 5.459768 TCAACGAATGTGTTTTCATCATGG 58.540 37.500 0.00 0.00 0.00 3.66
2077 2725 7.715264 ACGAACTTTTCTTAGTTTTTCAACG 57.285 32.000 0.00 0.00 38.43 4.10
2078 2726 9.120422 TCAACGAACTTTTCTTAGTTTTTCAAC 57.880 29.630 0.00 0.00 38.43 3.18
2079 2727 9.120422 GTCAACGAACTTTTCTTAGTTTTTCAA 57.880 29.630 0.00 0.00 38.43 2.69
2080 2728 8.291032 TGTCAACGAACTTTTCTTAGTTTTTCA 58.709 29.630 0.00 0.00 38.43 2.69
2133 2875 5.625886 CGTCTAATCCCAGTTGGTATGAACA 60.626 44.000 0.00 0.00 34.77 3.18
2145 2887 3.179830 CGAAACTGTCGTCTAATCCCAG 58.820 50.000 0.00 0.00 45.09 4.45
2182 2936 9.626045 CAATTAAGAACATAGAAAGGAACAACC 57.374 33.333 0.00 0.00 39.35 3.77
2244 2998 9.703892 CACCACCTAAATTTTATCATTCAACAA 57.296 29.630 0.00 0.00 0.00 2.83
2249 3003 7.654022 TCCCACCACCTAAATTTTATCATTC 57.346 36.000 0.00 0.00 0.00 2.67
2326 3080 9.787435 TCAACTAATGAAGTACCAACTACAAAT 57.213 29.630 0.00 0.00 37.50 2.32
2327 3081 9.048446 GTCAACTAATGAAGTACCAACTACAAA 57.952 33.333 0.00 0.00 40.50 2.83
2328 3082 8.426489 AGTCAACTAATGAAGTACCAACTACAA 58.574 33.333 0.00 0.00 40.50 2.41
2329 3083 7.870954 CAGTCAACTAATGAAGTACCAACTACA 59.129 37.037 0.00 0.00 40.50 2.74
2330 3084 7.871463 ACAGTCAACTAATGAAGTACCAACTAC 59.129 37.037 0.00 0.00 40.50 2.73
2331 3085 7.959175 ACAGTCAACTAATGAAGTACCAACTA 58.041 34.615 0.00 0.00 40.50 2.24
2332 3086 6.827727 ACAGTCAACTAATGAAGTACCAACT 58.172 36.000 0.00 0.00 40.50 3.16
2333 3087 6.929606 AGACAGTCAACTAATGAAGTACCAAC 59.070 38.462 2.66 0.00 40.50 3.77
2334 3088 7.062749 AGACAGTCAACTAATGAAGTACCAA 57.937 36.000 2.66 0.00 40.50 3.67
2335 3089 6.295123 GGAGACAGTCAACTAATGAAGTACCA 60.295 42.308 2.66 0.00 40.50 3.25
2336 3090 6.100668 GGAGACAGTCAACTAATGAAGTACC 58.899 44.000 2.66 0.00 40.50 3.34
2337 3091 6.688578 TGGAGACAGTCAACTAATGAAGTAC 58.311 40.000 2.66 0.00 35.73 2.73
2338 3092 6.911250 TGGAGACAGTCAACTAATGAAGTA 57.089 37.500 2.66 0.00 35.73 2.24
2339 3093 5.808366 TGGAGACAGTCAACTAATGAAGT 57.192 39.130 2.66 0.00 35.73 3.01
2355 3109 4.344390 ACGGAGGGAGTAATAAATGGAGAC 59.656 45.833 0.00 0.00 0.00 3.36
2356 3110 4.553678 ACGGAGGGAGTAATAAATGGAGA 58.446 43.478 0.00 0.00 0.00 3.71
2357 3111 4.957684 ACGGAGGGAGTAATAAATGGAG 57.042 45.455 0.00 0.00 0.00 3.86
2358 3112 4.102054 GGAACGGAGGGAGTAATAAATGGA 59.898 45.833 0.00 0.00 0.00 3.41
2359 3113 4.386711 GGAACGGAGGGAGTAATAAATGG 58.613 47.826 0.00 0.00 0.00 3.16
2360 3114 4.141574 TGGGAACGGAGGGAGTAATAAATG 60.142 45.833 0.00 0.00 0.00 2.32
2361 3115 4.042174 TGGGAACGGAGGGAGTAATAAAT 58.958 43.478 0.00 0.00 0.00 1.40
2362 3116 3.452878 TGGGAACGGAGGGAGTAATAAA 58.547 45.455 0.00 0.00 0.00 1.40
2363 3117 3.119009 TGGGAACGGAGGGAGTAATAA 57.881 47.619 0.00 0.00 0.00 1.40
2364 3118 2.852714 TGGGAACGGAGGGAGTAATA 57.147 50.000 0.00 0.00 0.00 0.98
2365 3119 1.961133 TTGGGAACGGAGGGAGTAAT 58.039 50.000 0.00 0.00 0.00 1.89
2366 3120 1.732117 TTTGGGAACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
2367 3121 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2368 3122 1.558294 GTATTTGGGAACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
2369 3123 1.838077 AGTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
2370 3124 1.961133 AGTATTTGGGAACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
2371 3125 2.290705 ACAAGTATTTGGGAACGGAGGG 60.291 50.000 2.81 0.00 38.66 4.30
2372 3126 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
2373 3127 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
2374 3128 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
2375 3129 4.760204 AGAAAGACAAGTATTTGGGAACGG 59.240 41.667 2.81 0.00 38.66 4.44
2376 3130 5.941948 AGAAAGACAAGTATTTGGGAACG 57.058 39.130 2.81 0.00 38.66 3.95
2377 3131 6.127980 GCCTAGAAAGACAAGTATTTGGGAAC 60.128 42.308 2.81 0.00 38.66 3.62
2378 3132 5.944007 GCCTAGAAAGACAAGTATTTGGGAA 59.056 40.000 2.81 0.00 38.66 3.97
2379 3133 5.013704 TGCCTAGAAAGACAAGTATTTGGGA 59.986 40.000 2.81 0.00 38.66 4.37
2380 3134 5.253330 TGCCTAGAAAGACAAGTATTTGGG 58.747 41.667 2.81 0.00 38.66 4.12
2381 3135 7.396540 AATGCCTAGAAAGACAAGTATTTGG 57.603 36.000 2.81 0.00 38.66 3.28
2382 3136 8.514594 TGAAATGCCTAGAAAGACAAGTATTTG 58.485 33.333 0.00 0.00 40.24 2.32
2383 3137 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2384 3138 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
2385 3139 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
2386 3140 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
2387 3141 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
2388 3142 6.810182 CCATTTGAAATGCCTAGAAAGACAAG 59.190 38.462 12.26 0.00 0.00 3.16
2389 3143 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
2390 3144 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
2391 3145 6.151817 AGTCCATTTGAAATGCCTAGAAAGAC 59.848 38.462 12.26 10.86 0.00 3.01
2392 3146 6.248433 AGTCCATTTGAAATGCCTAGAAAGA 58.752 36.000 12.26 0.00 0.00 2.52
2393 3147 6.151648 TGAGTCCATTTGAAATGCCTAGAAAG 59.848 38.462 12.26 0.00 0.00 2.62
2394 3148 6.009589 TGAGTCCATTTGAAATGCCTAGAAA 58.990 36.000 12.26 0.00 0.00 2.52
2395 3149 5.569355 TGAGTCCATTTGAAATGCCTAGAA 58.431 37.500 12.26 0.00 0.00 2.10
2396 3150 5.178096 TGAGTCCATTTGAAATGCCTAGA 57.822 39.130 12.26 1.83 0.00 2.43
2397 3151 5.183713 TGTTGAGTCCATTTGAAATGCCTAG 59.816 40.000 12.26 0.00 0.00 3.02
2398 3152 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
2399 3153 3.896888 TGTTGAGTCCATTTGAAATGCCT 59.103 39.130 12.26 9.70 0.00 4.75
2400 3154 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
2401 3155 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
2402 3156 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
2403 3157 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
2404 3158 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
2405 3159 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
2406 3160 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
2407 3161 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
2408 3162 4.843728 ACATCCGTATGTTGAGTCCATTT 58.156 39.130 0.00 0.00 44.07 2.32
2409 3163 4.487714 ACATCCGTATGTTGAGTCCATT 57.512 40.909 0.00 0.00 44.07 3.16
2410 3164 4.404394 TGTACATCCGTATGTTGAGTCCAT 59.596 41.667 0.00 0.00 44.07 3.41
2411 3165 3.764972 TGTACATCCGTATGTTGAGTCCA 59.235 43.478 0.00 0.00 44.07 4.02
2412 3166 4.380841 TGTACATCCGTATGTTGAGTCC 57.619 45.455 0.00 0.00 44.07 3.85
2413 3167 6.856938 GTCTATGTACATCCGTATGTTGAGTC 59.143 42.308 12.68 0.00 44.07 3.36
2414 3168 6.320418 TGTCTATGTACATCCGTATGTTGAGT 59.680 38.462 12.68 0.00 44.07 3.41
2415 3169 6.735130 TGTCTATGTACATCCGTATGTTGAG 58.265 40.000 12.68 0.00 44.07 3.02
2416 3170 6.702716 TGTCTATGTACATCCGTATGTTGA 57.297 37.500 12.68 0.00 44.07 3.18
2417 3171 9.639601 AATATGTCTATGTACATCCGTATGTTG 57.360 33.333 12.68 0.00 44.07 3.33
2449 3203 4.091424 GCGCAAAATGAGTGAATCTACAC 58.909 43.478 0.30 0.00 40.60 2.90
2450 3204 3.126858 GGCGCAAAATGAGTGAATCTACA 59.873 43.478 10.83 0.00 0.00 2.74
2451 3205 3.685058 GGCGCAAAATGAGTGAATCTAC 58.315 45.455 10.83 0.00 0.00 2.59
2452 3206 2.351418 CGGCGCAAAATGAGTGAATCTA 59.649 45.455 10.83 0.00 0.00 1.98
2453 3207 1.131126 CGGCGCAAAATGAGTGAATCT 59.869 47.619 10.83 0.00 0.00 2.40
2454 3208 1.135689 ACGGCGCAAAATGAGTGAATC 60.136 47.619 10.83 0.00 0.00 2.52
2455 3209 0.881118 ACGGCGCAAAATGAGTGAAT 59.119 45.000 10.83 0.00 0.00 2.57
2456 3210 1.514003 TACGGCGCAAAATGAGTGAA 58.486 45.000 10.83 0.00 0.00 3.18
2457 3211 1.396648 CATACGGCGCAAAATGAGTGA 59.603 47.619 10.83 0.00 0.00 3.41
2458 3212 1.130373 ACATACGGCGCAAAATGAGTG 59.870 47.619 10.83 0.00 0.00 3.51
2459 3213 1.448985 ACATACGGCGCAAAATGAGT 58.551 45.000 10.83 0.00 0.00 3.41
2460 3214 2.607635 ACTACATACGGCGCAAAATGAG 59.392 45.455 10.83 10.39 0.00 2.90
2461 3215 2.605818 GACTACATACGGCGCAAAATGA 59.394 45.455 10.83 0.00 0.00 2.57
2462 3216 2.350192 TGACTACATACGGCGCAAAATG 59.650 45.455 10.83 11.57 0.00 2.32
2463 3217 2.350498 GTGACTACATACGGCGCAAAAT 59.650 45.455 10.83 0.00 0.00 1.82
2464 3218 1.727880 GTGACTACATACGGCGCAAAA 59.272 47.619 10.83 0.00 0.00 2.44
2465 3219 1.067425 AGTGACTACATACGGCGCAAA 60.067 47.619 10.83 0.00 0.00 3.68
2466 3220 0.528924 AGTGACTACATACGGCGCAA 59.471 50.000 10.83 0.00 0.00 4.85
2467 3221 0.528924 AAGTGACTACATACGGCGCA 59.471 50.000 10.83 0.00 0.00 6.09
2468 3222 0.921347 CAAGTGACTACATACGGCGC 59.079 55.000 6.90 0.00 0.00 6.53
2469 3223 2.273370 ACAAGTGACTACATACGGCG 57.727 50.000 4.80 4.80 0.00 6.46
2470 3224 6.470557 TTTTAACAAGTGACTACATACGGC 57.529 37.500 0.00 0.00 0.00 5.68
2471 3225 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
2472 3226 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
2496 3250 9.582431 CCGTTCATAAATACTTGTCTTTCTAGA 57.418 33.333 0.00 0.00 0.00 2.43
2497 3251 9.582431 TCCGTTCATAAATACTTGTCTTTCTAG 57.418 33.333 0.00 0.00 0.00 2.43
2498 3252 9.582431 CTCCGTTCATAAATACTTGTCTTTCTA 57.418 33.333 0.00 0.00 0.00 2.10
2499 3253 7.549488 CCTCCGTTCATAAATACTTGTCTTTCT 59.451 37.037 0.00 0.00 0.00 2.52
2500 3254 7.201617 CCCTCCGTTCATAAATACTTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2501 3255 6.598064 CCCTCCGTTCATAAATACTTGTCTTT 59.402 38.462 0.00 0.00 0.00 2.52
2502 3256 6.070424 TCCCTCCGTTCATAAATACTTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2503 3257 5.424252 TCCCTCCGTTCATAAATACTTGTCT 59.576 40.000 0.00 0.00 0.00 3.41
2504 3258 5.667466 TCCCTCCGTTCATAAATACTTGTC 58.333 41.667 0.00 0.00 0.00 3.18
2505 3259 5.189145 ACTCCCTCCGTTCATAAATACTTGT 59.811 40.000 0.00 0.00 0.00 3.16
2506 3260 5.671493 ACTCCCTCCGTTCATAAATACTTG 58.329 41.667 0.00 0.00 0.00 3.16
2507 3261 5.952347 ACTCCCTCCGTTCATAAATACTT 57.048 39.130 0.00 0.00 0.00 2.24
2508 3262 5.895534 TGTACTCCCTCCGTTCATAAATACT 59.104 40.000 0.00 0.00 0.00 2.12
2509 3263 6.152932 TGTACTCCCTCCGTTCATAAATAC 57.847 41.667 0.00 0.00 0.00 1.89
2510 3264 6.989155 ATGTACTCCCTCCGTTCATAAATA 57.011 37.500 0.00 0.00 0.00 1.40
2511 3265 5.888982 ATGTACTCCCTCCGTTCATAAAT 57.111 39.130 0.00 0.00 0.00 1.40
2512 3266 5.424252 AGAATGTACTCCCTCCGTTCATAAA 59.576 40.000 0.00 0.00 0.00 1.40
2513 3267 4.960469 AGAATGTACTCCCTCCGTTCATAA 59.040 41.667 0.00 0.00 0.00 1.90
2514 3268 4.543689 AGAATGTACTCCCTCCGTTCATA 58.456 43.478 0.00 0.00 0.00 2.15
2515 3269 3.375699 AGAATGTACTCCCTCCGTTCAT 58.624 45.455 0.00 0.00 0.00 2.57
2516 3270 2.816411 AGAATGTACTCCCTCCGTTCA 58.184 47.619 0.00 0.00 0.00 3.18
2517 3271 3.522553 CAAGAATGTACTCCCTCCGTTC 58.477 50.000 0.00 0.00 0.00 3.95
2518 3272 2.236395 CCAAGAATGTACTCCCTCCGTT 59.764 50.000 0.00 0.00 0.00 4.44
2519 3273 1.831736 CCAAGAATGTACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
2520 3274 2.108168 TCCAAGAATGTACTCCCTCCG 58.892 52.381 0.00 0.00 0.00 4.63
2521 3275 3.875125 GTTCCAAGAATGTACTCCCTCC 58.125 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.