Multiple sequence alignment - TraesCS3B01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G008700 chr3B 100.000 5316 0 0 1 5316 4332767 4327452 0.000000e+00 9817.0
1 TraesCS3B01G008700 chr3B 80.198 101 16 2 568 664 5099841 5099941 7.390000e-09 73.1
2 TraesCS3B01G008700 chr3B 79.208 101 17 2 568 664 4228421 4228521 3.440000e-07 67.6
3 TraesCS3B01G008700 chr3B 94.118 34 2 0 617 650 5105639 5105672 1.000000e-02 52.8
4 TraesCS3B01G008700 chr3A 90.471 2015 135 40 685 2678 1919260 1921238 0.000000e+00 2604.0
5 TraesCS3B01G008700 chr3A 90.242 1076 67 16 2750 3807 1921374 1922429 0.000000e+00 1371.0
6 TraesCS3B01G008700 chr3A 90.744 605 29 10 3807 4387 1922489 1923090 0.000000e+00 782.0
7 TraesCS3B01G008700 chr3A 82.943 598 82 12 2711 3306 268525707 268526286 6.100000e-144 521.0
8 TraesCS3B01G008700 chr3A 94.961 258 12 1 227 483 1909438 1909695 2.310000e-108 403.0
9 TraesCS3B01G008700 chr3A 89.855 138 9 3 570 703 1918892 1919028 7.080000e-39 172.0
10 TraesCS3B01G008700 chr3A 90.435 115 6 4 4459 4573 1923490 1923599 4.290000e-31 147.0
11 TraesCS3B01G008700 chr3A 95.122 82 4 0 485 566 1918739 1918820 4.320000e-26 130.0
12 TraesCS3B01G008700 chr3A 82.979 141 19 2 1531 1671 95843325 95843190 7.230000e-24 122.0
13 TraesCS3B01G008700 chr3A 82.812 128 4 8 4993 5120 1924324 1924433 1.220000e-16 99.0
14 TraesCS3B01G008700 chr3A 92.727 55 0 1 4919 4973 1924273 1924323 5.710000e-10 76.8
15 TraesCS3B01G008700 chr3D 87.043 2215 159 65 576 2766 2150834 2148724 0.000000e+00 2383.0
16 TraesCS3B01G008700 chr3D 91.522 1439 69 29 2761 4176 2148569 2147161 0.000000e+00 1932.0
17 TraesCS3B01G008700 chr3D 91.197 568 48 1 1 566 2151479 2150912 0.000000e+00 771.0
18 TraesCS3B01G008700 chr3D 86.872 358 12 12 4919 5260 2146222 2145884 8.410000e-98 368.0
19 TraesCS3B01G008700 chr3D 88.701 177 6 4 4452 4625 2146944 2146779 2.510000e-48 204.0
20 TraesCS3B01G008700 chr3D 92.086 139 8 2 4671 4809 2146692 2146557 5.430000e-45 193.0
21 TraesCS3B01G008700 chr3D 85.882 85 12 0 568 652 1908944 1909028 2.040000e-14 91.6
22 TraesCS3B01G008700 chr7A 81.586 744 107 14 2642 3382 330106317 330105601 5.930000e-164 588.0
23 TraesCS3B01G008700 chr7A 84.654 593 74 11 2707 3297 69432300 69432877 4.620000e-160 575.0
24 TraesCS3B01G008700 chr7A 83.117 231 21 9 994 1219 594164071 594163854 1.510000e-45 195.0
25 TraesCS3B01G008700 chr7A 88.272 162 15 3 1984 2145 330106472 330106315 1.950000e-44 191.0
26 TraesCS3B01G008700 chr2D 82.270 705 92 19 2608 3306 68787722 68788399 3.570000e-161 579.0
27 TraesCS3B01G008700 chr2D 88.333 180 16 2 2075 2254 571748616 571748790 1.500000e-50 211.0
28 TraesCS3B01G008700 chr2D 93.204 103 7 0 2587 2689 3610220 3610322 9.220000e-33 152.0
29 TraesCS3B01G008700 chr7D 83.914 603 78 13 2707 3306 106032704 106032118 4.650000e-155 558.0
30 TraesCS3B01G008700 chr7B 83.775 604 78 14 2707 3306 7206274 7205687 6.020000e-154 555.0
31 TraesCS3B01G008700 chr7B 83.582 134 19 3 1405 1535 60993276 60993409 7.230000e-24 122.0
32 TraesCS3B01G008700 chr5B 85.009 547 67 8 2707 3251 810320 809787 4.680000e-150 542.0
33 TraesCS3B01G008700 chr5B 85.897 234 25 5 990 1219 670366439 670366210 5.320000e-60 243.0
34 TraesCS3B01G008700 chr2A 81.923 520 67 17 1024 1535 20809384 20809884 1.070000e-111 414.0
35 TraesCS3B01G008700 chr2A 89.444 180 14 3 2075 2254 4400854 4401028 6.930000e-54 222.0
36 TraesCS3B01G008700 chr2B 81.092 513 78 11 1026 1535 31630853 31630357 4.990000e-105 392.0
37 TraesCS3B01G008700 chr2B 79.845 516 60 23 1026 1535 31678100 31677623 2.370000e-88 337.0
38 TraesCS3B01G008700 chr2B 79.457 516 61 23 1026 1535 31656839 31656363 1.850000e-84 324.0
39 TraesCS3B01G008700 chr2B 91.250 160 10 2 1984 2143 46986221 46986376 1.160000e-51 215.0
40 TraesCS3B01G008700 chr2B 88.889 162 14 2 1984 2145 340339209 340339052 4.200000e-46 196.0
41 TraesCS3B01G008700 chrUn 80.083 482 59 19 1026 1502 306110515 306110964 1.850000e-84 324.0
42 TraesCS3B01G008700 chrUn 77.872 592 75 34 2869 3446 35266168 35265619 3.090000e-82 316.0
43 TraesCS3B01G008700 chrUn 77.872 592 75 34 2869 3446 293412914 293413463 3.090000e-82 316.0
44 TraesCS3B01G008700 chrUn 85.556 90 10 1 3294 3383 118955500 118955586 2.040000e-14 91.6
45 TraesCS3B01G008700 chr4B 87.823 271 31 2 1984 2254 64455626 64455894 3.090000e-82 316.0
46 TraesCS3B01G008700 chr4B 88.660 97 11 0 1571 1667 584687428 584687524 9.350000e-23 119.0
47 TraesCS3B01G008700 chr5D 89.529 191 19 1 990 1180 12873425 12873236 1.910000e-59 241.0
48 TraesCS3B01G008700 chr5D 84.211 247 36 3 1291 1535 12872122 12871877 2.470000e-58 237.0
49 TraesCS3B01G008700 chr5D 85.507 138 15 2 1531 1668 227771915 227772047 7.180000e-29 139.0
50 TraesCS3B01G008700 chr6D 91.358 162 10 2 1984 2145 160224976 160225133 8.960000e-53 219.0
51 TraesCS3B01G008700 chr6D 87.500 192 16 2 2566 2757 46497424 46497241 1.160000e-51 215.0
52 TraesCS3B01G008700 chr4A 88.889 180 15 2 2075 2254 691922811 691922637 3.220000e-52 217.0
53 TraesCS3B01G008700 chr4A 87.222 180 15 4 2075 2254 691882907 691882736 1.170000e-46 198.0
54 TraesCS3B01G008700 chr4A 88.660 97 11 0 1571 1667 50889617 50889713 9.350000e-23 119.0
55 TraesCS3B01G008700 chr6A 91.753 97 8 0 1571 1667 31918718 31918814 9.290000e-28 135.0
56 TraesCS3B01G008700 chr6B 84.328 134 16 2 1538 1671 22055632 22055504 5.590000e-25 126.0
57 TraesCS3B01G008700 chr1A 89.691 97 10 0 1571 1667 80620334 80620238 2.010000e-24 124.0
58 TraesCS3B01G008700 chr1B 87.912 91 8 1 3293 3383 586872879 586872792 2.620000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G008700 chr3B 4327452 4332767 5315 True 9817.000000 9817 100.000000 1 5316 1 chr3B.!!$R1 5315
1 TraesCS3B01G008700 chr3A 1918739 1924433 5694 False 672.725000 2604 90.301000 485 5120 8 chr3A.!!$F3 4635
2 TraesCS3B01G008700 chr3A 268525707 268526286 579 False 521.000000 521 82.943000 2711 3306 1 chr3A.!!$F2 595
3 TraesCS3B01G008700 chr3D 2145884 2151479 5595 True 975.166667 2383 89.570167 1 5260 6 chr3D.!!$R1 5259
4 TraesCS3B01G008700 chr7A 69432300 69432877 577 False 575.000000 575 84.654000 2707 3297 1 chr7A.!!$F1 590
5 TraesCS3B01G008700 chr7A 330105601 330106472 871 True 389.500000 588 84.929000 1984 3382 2 chr7A.!!$R2 1398
6 TraesCS3B01G008700 chr2D 68787722 68788399 677 False 579.000000 579 82.270000 2608 3306 1 chr2D.!!$F2 698
7 TraesCS3B01G008700 chr7D 106032118 106032704 586 True 558.000000 558 83.914000 2707 3306 1 chr7D.!!$R1 599
8 TraesCS3B01G008700 chr7B 7205687 7206274 587 True 555.000000 555 83.775000 2707 3306 1 chr7B.!!$R1 599
9 TraesCS3B01G008700 chr5B 809787 810320 533 True 542.000000 542 85.009000 2707 3251 1 chr5B.!!$R1 544
10 TraesCS3B01G008700 chr2A 20809384 20809884 500 False 414.000000 414 81.923000 1024 1535 1 chr2A.!!$F2 511
11 TraesCS3B01G008700 chrUn 35265619 35266168 549 True 316.000000 316 77.872000 2869 3446 1 chrUn.!!$R1 577
12 TraesCS3B01G008700 chrUn 293412914 293413463 549 False 316.000000 316 77.872000 2869 3446 1 chrUn.!!$F2 577
13 TraesCS3B01G008700 chr5D 12871877 12873425 1548 True 239.000000 241 86.870000 990 1535 2 chr5D.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 188 0.034059 AGTGCAAAGTGCTAGCGAGT 59.966 50.0 10.77 0.00 45.31 4.18 F
930 1267 0.103208 CCTCTCTCCGACCAAATCCG 59.897 60.0 0.00 0.00 0.00 4.18 F
2208 3578 0.685097 GAGGCAGACCACCAGTTGTA 59.315 55.0 0.00 0.00 39.06 2.41 F
3076 4703 0.667993 TTGGCCTTCAAGTTCTTGCG 59.332 50.0 3.32 2.27 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 3247 1.561542 ACCTGCTCCTCCCTTGTAATG 59.438 52.381 0.00 0.00 0.00 1.90 R
2514 3890 0.179163 GAATTGCCGGCAGTTACAGC 60.179 55.000 33.81 19.34 0.00 4.40 R
3421 5066 0.532573 TGTGAATCTCGGAGACCTGC 59.467 55.000 10.41 2.51 0.00 4.85 R
4930 7194 0.040646 ATCACCACTACGGACTCCCA 59.959 55.000 0.00 0.00 38.63 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 7.177878 AGGCGGATCATATCATAAGGATTTTT 58.822 34.615 0.00 0.00 37.44 1.94
89 90 7.337942 AGGCGGATCATATCATAAGGATTTTTC 59.662 37.037 0.00 0.00 37.44 2.29
97 98 8.689972 CATATCATAAGGATTTTTCCCCATAGC 58.310 37.037 0.00 0.00 37.44 2.97
133 134 8.774546 ATAGATATGTAGAGTCCCCATGTATG 57.225 38.462 3.08 0.00 0.00 2.39
134 135 6.805150 AGATATGTAGAGTCCCCATGTATGA 58.195 40.000 3.08 0.00 0.00 2.15
141 142 2.852449 AGTCCCCATGTATGACACCAAT 59.148 45.455 8.60 0.00 0.00 3.16
145 146 4.415179 TCCCCATGTATGACACCAATACAT 59.585 41.667 3.76 3.76 40.82 2.29
151 152 4.331443 TGTATGACACCAATACATCAACGC 59.669 41.667 0.00 0.00 0.00 4.84
174 175 6.073765 CGCCTAGGTATATACAAAGTGCAAAG 60.074 42.308 14.70 0.00 0.00 2.77
176 177 7.254795 GCCTAGGTATATACAAAGTGCAAAGTG 60.255 40.741 14.70 0.00 0.00 3.16
178 179 6.180472 AGGTATATACAAAGTGCAAAGTGCT 58.820 36.000 14.70 0.00 45.31 4.40
185 188 0.034059 AGTGCAAAGTGCTAGCGAGT 59.966 50.000 10.77 0.00 45.31 4.18
209 212 3.808728 TGCAACATCCTTAGCTATGGTC 58.191 45.455 21.63 8.74 0.00 4.02
218 221 2.916702 TAGCTATGGTCCTCGTCGTA 57.083 50.000 0.00 0.00 0.00 3.43
225 228 2.046988 TCCTCGTCGTACTCGCCA 60.047 61.111 0.00 0.00 36.96 5.69
228 231 2.359107 TCGTCGTACTCGCCACCT 60.359 61.111 0.00 0.00 36.96 4.00
230 233 1.800315 CGTCGTACTCGCCACCTTG 60.800 63.158 0.00 0.00 36.96 3.61
245 248 1.709994 CCTTGTCCTATGGCCTCCCC 61.710 65.000 3.32 0.00 0.00 4.81
302 305 1.073284 TGCAAGAAGACCACTAACCCC 59.927 52.381 0.00 0.00 0.00 4.95
311 314 1.595929 CACTAACCCCGCGTTGTGT 60.596 57.895 4.92 0.00 35.79 3.72
318 321 4.312231 CCGCGTTGTGTGTGGCTG 62.312 66.667 4.92 0.00 0.00 4.85
329 332 3.804193 GTGGCTGTGCTAAGCGCC 61.804 66.667 2.29 0.00 44.52 6.53
377 380 2.887568 CATGACCTCGCCAGCGTC 60.888 66.667 12.32 3.06 40.74 5.19
397 400 2.703798 CCCTGCAAATCGCCACCAG 61.704 63.158 0.00 0.00 41.33 4.00
416 419 1.961277 CACCGCCAAGAAGAACGCT 60.961 57.895 0.00 0.00 0.00 5.07
419 422 2.606961 CGCCAAGAAGAACGCTGCA 61.607 57.895 0.00 0.00 0.00 4.41
420 423 1.208614 GCCAAGAAGAACGCTGCAG 59.791 57.895 10.11 10.11 0.00 4.41
428 431 0.319728 AGAACGCTGCAGTCATCTGT 59.680 50.000 16.64 2.00 43.05 3.41
551 554 2.192861 CAGCTTCAACGGTGGGCAA 61.193 57.895 18.32 0.00 0.00 4.52
568 571 2.487934 GCAATATGCCGAGACACTCAT 58.512 47.619 0.00 0.00 37.42 2.90
654 725 0.764271 TGCTCATCACCAAGTGACCA 59.236 50.000 0.00 0.00 45.65 4.02
792 1116 1.559682 CTAGAAGGCAAGCCCACCTTA 59.440 52.381 7.62 0.00 46.33 2.69
793 1117 1.002857 AGAAGGCAAGCCCACCTTAT 58.997 50.000 7.62 0.00 46.33 1.73
858 1182 2.793831 GGCACGGCATTTATGGTCT 58.206 52.632 0.00 0.00 0.00 3.85
864 1188 3.034635 ACGGCATTTATGGTCTCTCTCT 58.965 45.455 0.00 0.00 0.00 3.10
866 1190 3.320541 CGGCATTTATGGTCTCTCTCTCT 59.679 47.826 0.00 0.00 0.00 3.10
867 1191 4.558496 CGGCATTTATGGTCTCTCTCTCTC 60.558 50.000 0.00 0.00 0.00 3.20
868 1192 4.588528 GGCATTTATGGTCTCTCTCTCTCT 59.411 45.833 0.00 0.00 0.00 3.10
869 1193 5.278957 GGCATTTATGGTCTCTCTCTCTCTC 60.279 48.000 0.00 0.00 0.00 3.20
870 1194 5.536161 GCATTTATGGTCTCTCTCTCTCTCT 59.464 44.000 0.00 0.00 0.00 3.10
871 1195 6.294176 GCATTTATGGTCTCTCTCTCTCTCTC 60.294 46.154 0.00 0.00 0.00 3.20
872 1196 3.864789 ATGGTCTCTCTCTCTCTCTCC 57.135 52.381 0.00 0.00 0.00 3.71
873 1197 2.845659 TGGTCTCTCTCTCTCTCTCCT 58.154 52.381 0.00 0.00 0.00 3.69
874 1198 4.002256 TGGTCTCTCTCTCTCTCTCCTA 57.998 50.000 0.00 0.00 0.00 2.94
875 1199 3.967326 TGGTCTCTCTCTCTCTCTCCTAG 59.033 52.174 0.00 0.00 0.00 3.02
876 1200 3.967987 GGTCTCTCTCTCTCTCTCCTAGT 59.032 52.174 0.00 0.00 0.00 2.57
877 1201 4.039366 GGTCTCTCTCTCTCTCTCCTAGTC 59.961 54.167 0.00 0.00 0.00 2.59
878 1202 4.649674 GTCTCTCTCTCTCTCTCCTAGTCA 59.350 50.000 0.00 0.00 0.00 3.41
879 1203 5.305644 GTCTCTCTCTCTCTCTCCTAGTCAT 59.694 48.000 0.00 0.00 0.00 3.06
880 1204 5.905331 TCTCTCTCTCTCTCTCCTAGTCATT 59.095 44.000 0.00 0.00 0.00 2.57
881 1205 6.042093 TCTCTCTCTCTCTCTCCTAGTCATTC 59.958 46.154 0.00 0.00 0.00 2.67
882 1206 5.905331 TCTCTCTCTCTCTCCTAGTCATTCT 59.095 44.000 0.00 0.00 0.00 2.40
883 1207 6.386927 TCTCTCTCTCTCTCCTAGTCATTCTT 59.613 42.308 0.00 0.00 0.00 2.52
884 1208 6.591935 TCTCTCTCTCTCCTAGTCATTCTTC 58.408 44.000 0.00 0.00 0.00 2.87
885 1209 6.386927 TCTCTCTCTCTCCTAGTCATTCTTCT 59.613 42.308 0.00 0.00 0.00 2.85
886 1210 6.591935 TCTCTCTCTCCTAGTCATTCTTCTC 58.408 44.000 0.00 0.00 0.00 2.87
887 1211 5.690865 TCTCTCTCCTAGTCATTCTTCTCC 58.309 45.833 0.00 0.00 0.00 3.71
888 1212 4.456535 TCTCTCCTAGTCATTCTTCTCCG 58.543 47.826 0.00 0.00 0.00 4.63
889 1213 4.164413 TCTCTCCTAGTCATTCTTCTCCGA 59.836 45.833 0.00 0.00 0.00 4.55
890 1214 5.055265 TCTCCTAGTCATTCTTCTCCGAT 57.945 43.478 0.00 0.00 0.00 4.18
918 1242 1.152839 CCCCGTCTCTCCCTCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
920 1244 1.525077 CCGTCTCTCCCTCTCTCCG 60.525 68.421 0.00 0.00 0.00 4.63
921 1245 1.523046 CGTCTCTCCCTCTCTCCGA 59.477 63.158 0.00 0.00 0.00 4.55
922 1246 0.812412 CGTCTCTCCCTCTCTCCGAC 60.812 65.000 0.00 0.00 0.00 4.79
924 1248 0.914902 TCTCTCCCTCTCTCCGACCA 60.915 60.000 0.00 0.00 0.00 4.02
930 1267 0.103208 CCTCTCTCCGACCAAATCCG 59.897 60.000 0.00 0.00 0.00 4.18
1119 1458 3.430497 TCCCTCTCCTCCCTCCCG 61.430 72.222 0.00 0.00 0.00 5.14
1187 1527 2.527951 CTTTCTCACTCCCCCGCCAG 62.528 65.000 0.00 0.00 0.00 4.85
1478 2836 6.983906 ATGAAGGGTATCCAAAATTCATCC 57.016 37.500 0.00 0.00 33.32 3.51
1535 2896 6.611381 TGCTGCTCATAAACTTATGTTGTTC 58.389 36.000 0.00 0.51 40.97 3.18
1536 2897 6.206438 TGCTGCTCATAAACTTATGTTGTTCA 59.794 34.615 0.00 2.53 40.97 3.18
1546 2907 1.901591 ATGTTGTTCACCTGCTCCTG 58.098 50.000 0.00 0.00 0.00 3.86
1561 2922 2.113433 CCTGGCAGCTGTCATGCTC 61.113 63.158 23.50 0.00 41.98 4.26
1678 3039 8.070769 GCAAGGTTTCTACTAGTTTTTCTCTTG 58.929 37.037 0.00 10.31 0.00 3.02
1699 3066 3.133901 TGATTATAGCTTTCGGTGGAGCA 59.866 43.478 0.00 0.00 41.31 4.26
1701 3068 2.489938 ATAGCTTTCGGTGGAGCAAA 57.510 45.000 0.00 0.00 41.31 3.68
1729 3096 5.293079 CCTCTCTTGTGTAGCTTAATTGCTC 59.707 44.000 0.00 0.00 42.97 4.26
1760 3127 1.579698 CTGTGGAGATGAATCGCAGG 58.420 55.000 0.00 0.00 0.00 4.85
1921 3288 1.098050 GCCAGCATTTCTGACCGATT 58.902 50.000 0.00 0.00 45.72 3.34
1927 3294 3.686726 AGCATTTCTGACCGATTCTTGTC 59.313 43.478 0.00 0.00 0.00 3.18
1929 3296 4.095483 GCATTTCTGACCGATTCTTGTCAT 59.905 41.667 6.41 0.00 40.46 3.06
1950 3320 6.417930 GTCATTTTCAGACTTTTTGTACAGCC 59.582 38.462 0.00 0.00 33.29 4.85
1956 3326 4.335315 CAGACTTTTTGTACAGCCAGAACA 59.665 41.667 0.00 0.00 0.00 3.18
1963 3333 1.466167 GTACAGCCAGAACAGCACATG 59.534 52.381 0.00 0.00 0.00 3.21
2155 3525 5.299782 ACGCTTAGGTACCAATTTCAAACAA 59.700 36.000 15.94 0.00 0.00 2.83
2156 3526 6.015772 ACGCTTAGGTACCAATTTCAAACAAT 60.016 34.615 15.94 0.00 0.00 2.71
2158 3528 7.061789 CGCTTAGGTACCAATTTCAAACAATTC 59.938 37.037 15.94 0.00 0.00 2.17
2208 3578 0.685097 GAGGCAGACCACCAGTTGTA 59.315 55.000 0.00 0.00 39.06 2.41
2253 3627 4.323562 GCAAAGGTAGTCCCACAATCTAGT 60.324 45.833 0.00 0.00 34.66 2.57
2254 3628 5.803470 GCAAAGGTAGTCCCACAATCTAGTT 60.803 44.000 0.00 0.00 34.66 2.24
2258 3632 7.362802 AGGTAGTCCCACAATCTAGTTAATC 57.637 40.000 0.00 0.00 34.66 1.75
2265 3639 9.262358 GTCCCACAATCTAGTTAATCTATTGAC 57.738 37.037 5.38 0.00 0.00 3.18
2266 3640 8.429641 TCCCACAATCTAGTTAATCTATTGACC 58.570 37.037 5.38 0.00 0.00 4.02
2267 3641 8.210946 CCCACAATCTAGTTAATCTATTGACCA 58.789 37.037 5.38 0.00 0.00 4.02
2280 3655 7.937700 ATCTATTGACCATCTTAAGGAAGGA 57.062 36.000 13.40 0.00 36.40 3.36
2284 3659 9.413734 CTATTGACCATCTTAAGGAAGGAATTT 57.586 33.333 13.40 0.00 36.40 1.82
2289 3664 8.727100 ACCATCTTAAGGAAGGAATTTCTTTT 57.273 30.769 0.00 0.00 36.59 2.27
2401 3777 3.885297 GTGGCAATAGTAACCATCAGCAT 59.115 43.478 0.00 0.00 35.53 3.79
2435 3811 4.451900 TCTTCTCCTTCTGGTTTTGACAC 58.548 43.478 0.00 0.00 34.23 3.67
2440 3816 3.127895 TCCTTCTGGTTTTGACACGTTTG 59.872 43.478 0.00 0.00 34.23 2.93
2441 3817 2.553079 TCTGGTTTTGACACGTTTGC 57.447 45.000 0.00 0.00 0.00 3.68
2448 3824 2.605837 TTGACACGTTTGCTCTGGTA 57.394 45.000 0.00 0.00 0.00 3.25
2514 3890 2.477863 CCGGCTTTTAAGAAGAATGGCG 60.478 50.000 10.31 10.31 44.30 5.69
2556 3932 8.773404 TTCTTCTAGTATAAGGTTTGCTGTTC 57.227 34.615 0.00 0.00 0.00 3.18
2585 3961 9.097257 GTACTCTGACTAGTCGTTTACTATCTT 57.903 37.037 17.85 0.00 39.96 2.40
2595 3971 6.979238 AGTCGTTTACTATCTTTGTGGATAGC 59.021 38.462 10.31 0.00 45.26 2.97
2659 4036 6.426025 CCACTGTCCAGTATGATATCACAATG 59.574 42.308 7.78 5.95 40.20 2.82
2689 4066 8.970859 ATAGAGCATTTGAATGTAAGCTAGTT 57.029 30.769 5.68 0.00 38.65 2.24
2693 4070 8.737168 AGCATTTGAATGTAAGCTAGTTGATA 57.263 30.769 5.68 0.00 38.65 2.15
2694 4071 9.347240 AGCATTTGAATGTAAGCTAGTTGATAT 57.653 29.630 5.68 0.00 38.65 1.63
2695 4072 9.956720 GCATTTGAATGTAAGCTAGTTGATATT 57.043 29.630 5.68 0.00 38.65 1.28
2699 4076 8.893219 TGAATGTAAGCTAGTTGATATTGAGG 57.107 34.615 0.00 0.00 0.00 3.86
2776 4380 9.552114 GTTTCATTCAGAATTATGACACTTCTG 57.448 33.333 1.37 14.00 44.59 3.02
2791 4395 6.153510 TGACACTTCTGAGAGTAGCATTGTAT 59.846 38.462 0.00 0.00 0.00 2.29
2795 4399 7.434897 CACTTCTGAGAGTAGCATTGTATCTTC 59.565 40.741 0.00 0.00 0.00 2.87
2822 4426 9.606631 ATTTTTACATGATCAGACTACCTTCTC 57.393 33.333 0.00 0.00 0.00 2.87
2863 4482 8.656849 CCAAACTATGTTGTATGTCTTCAGTAC 58.343 37.037 0.00 0.00 0.00 2.73
2929 4551 6.823689 TCATAGCTCGAATTTTAGGCTTTCTT 59.176 34.615 0.00 0.00 34.88 2.52
2931 4553 5.703876 AGCTCGAATTTTAGGCTTTCTTTG 58.296 37.500 0.00 0.00 0.00 2.77
3076 4703 0.667993 TTGGCCTTCAAGTTCTTGCG 59.332 50.000 3.32 2.27 0.00 4.85
3110 4747 0.875040 CGCTGATGCTGCTCAGGTAG 60.875 60.000 21.93 6.81 42.42 3.18
3194 4833 6.817765 TCTTGACCCATTGTTCTTGTTATC 57.182 37.500 0.00 0.00 0.00 1.75
3199 4843 6.718912 TGACCCATTGTTCTTGTTATCATGAA 59.281 34.615 0.00 0.00 36.06 2.57
3200 4844 7.232330 TGACCCATTGTTCTTGTTATCATGAAA 59.768 33.333 0.00 0.00 38.70 2.69
3201 4845 7.605449 ACCCATTGTTCTTGTTATCATGAAAG 58.395 34.615 0.00 0.00 38.70 2.62
3202 4846 7.451255 ACCCATTGTTCTTGTTATCATGAAAGA 59.549 33.333 0.00 0.98 38.70 2.52
3203 4847 7.756722 CCCATTGTTCTTGTTATCATGAAAGAC 59.243 37.037 0.00 0.00 38.70 3.01
3204 4848 7.756722 CCATTGTTCTTGTTATCATGAAAGACC 59.243 37.037 0.00 0.00 38.70 3.85
3211 4855 5.416083 TGTTATCATGAAAGACCTGTACCG 58.584 41.667 0.00 0.00 0.00 4.02
3248 4892 3.947834 CCTGTCTCAAAACTGTGAACCTT 59.052 43.478 0.00 0.00 0.00 3.50
3252 4896 3.378112 TCTCAAAACTGTGAACCTTGCTG 59.622 43.478 0.00 0.00 0.00 4.41
3260 4904 2.157738 GTGAACCTTGCTGCTCTCATT 58.842 47.619 0.00 0.00 0.00 2.57
3276 4920 5.239087 GCTCTCATTCAATGATCCTTTCCTC 59.761 44.000 0.00 0.00 38.85 3.71
3288 4932 4.060038 TCCTTTCCTCTATGATTCGTGC 57.940 45.455 0.00 0.00 0.00 5.34
3340 4985 8.589629 CATGCATTATTAGAAAGAGTTTGTTGC 58.410 33.333 0.00 0.00 0.00 4.17
3350 4995 6.318648 AGAAAGAGTTTGTTGCATTGACACTA 59.681 34.615 0.00 0.00 0.00 2.74
3421 5066 6.660521 TGCTATCCCAAAGGCTATATCAAATG 59.339 38.462 0.00 0.00 0.00 2.32
3481 5126 5.722021 AAATGAGGCTTTTTCGGTATGTT 57.278 34.783 0.00 0.00 0.00 2.71
3496 5141 7.931578 TCGGTATGTTAATGGTCTTTTCATT 57.068 32.000 0.00 0.00 38.29 2.57
3620 5280 4.569943 TCTCCTGTAAGCTGCTAAACTTG 58.430 43.478 0.90 2.73 0.00 3.16
3634 5294 8.722394 GCTGCTAAACTTGAGTAAACTATCTTT 58.278 33.333 0.00 0.00 0.00 2.52
3744 5404 1.217942 GTTTCCCTGGGCCATCCTATT 59.782 52.381 6.72 0.00 36.20 1.73
3906 5626 8.261522 GGAATCTCTCTCCTCTTAAGCTAAAAA 58.738 37.037 0.00 0.00 0.00 1.94
3972 5693 3.945285 CCGTCCTTTGGTATAGTTGCATT 59.055 43.478 0.00 0.00 0.00 3.56
3986 5707 9.173939 GTATAGTTGCATTCAATTTCATACTGC 57.826 33.333 0.00 0.00 34.29 4.40
3995 5716 5.702865 TCAATTTCATACTGCTGAACTTGC 58.297 37.500 13.86 0.00 41.69 4.01
4013 5734 0.459489 GCAGTGTTTTTGCTCCACCA 59.541 50.000 0.00 0.00 38.51 4.17
4055 5776 2.523168 AAGTTTGGGGTTGCCGGG 60.523 61.111 2.18 0.00 0.00 5.73
4058 5779 4.924187 TTTGGGGTTGCCGGGGTG 62.924 66.667 2.18 0.00 0.00 4.61
4225 5946 4.917385 AGGGTGCATTACAAGATAACACA 58.083 39.130 0.00 0.00 0.00 3.72
4250 5971 9.346725 CAATTAACAAGTGGAATAGAGCTTTTC 57.653 33.333 0.00 0.00 0.00 2.29
4254 5989 4.227864 AGTGGAATAGAGCTTTTCCCTG 57.772 45.455 16.81 0.00 39.12 4.45
4267 6002 0.537188 TTCCCTGAGCGATTCTGACC 59.463 55.000 0.00 0.00 0.00 4.02
4268 6003 0.614697 TCCCTGAGCGATTCTGACCA 60.615 55.000 0.00 0.00 0.00 4.02
4300 6035 1.876714 GCAATCTTCGTCGCGCCTA 60.877 57.895 0.00 0.00 0.00 3.93
4338 6077 3.991773 TGTGAAGTTTACCATGAGCGTAC 59.008 43.478 0.00 0.00 0.00 3.67
4346 6085 1.091771 CCATGAGCGTACTGGCAAGG 61.092 60.000 0.00 0.00 34.64 3.61
4372 6114 3.817238 CGGTGTAAAGGTTGTTGTATGC 58.183 45.455 0.00 0.00 0.00 3.14
4381 6123 5.165961 AGGTTGTTGTATGCTGACTGTAT 57.834 39.130 0.00 0.00 0.00 2.29
4393 6142 3.616076 GCTGACTGTATCTTGTGTGAGCT 60.616 47.826 0.00 0.00 36.87 4.09
4400 6149 2.820059 TCTTGTGTGAGCTGTAGTGG 57.180 50.000 0.00 0.00 0.00 4.00
4401 6150 1.344438 TCTTGTGTGAGCTGTAGTGGG 59.656 52.381 0.00 0.00 0.00 4.61
4402 6151 0.396435 TTGTGTGAGCTGTAGTGGGG 59.604 55.000 0.00 0.00 0.00 4.96
4403 6152 0.471022 TGTGTGAGCTGTAGTGGGGA 60.471 55.000 0.00 0.00 0.00 4.81
4404 6153 0.247736 GTGTGAGCTGTAGTGGGGAG 59.752 60.000 0.00 0.00 0.00 4.30
4405 6154 0.904865 TGTGAGCTGTAGTGGGGAGG 60.905 60.000 0.00 0.00 0.00 4.30
4406 6155 1.306141 TGAGCTGTAGTGGGGAGGG 60.306 63.158 0.00 0.00 0.00 4.30
4407 6156 2.689034 AGCTGTAGTGGGGAGGGC 60.689 66.667 0.00 0.00 0.00 5.19
4408 6157 3.009115 GCTGTAGTGGGGAGGGCA 61.009 66.667 0.00 0.00 0.00 5.36
4409 6158 3.036429 GCTGTAGTGGGGAGGGCAG 62.036 68.421 0.00 0.00 0.00 4.85
4412 6161 2.040606 TAGTGGGGAGGGCAGGAC 59.959 66.667 0.00 0.00 0.00 3.85
4428 6177 1.742761 GGACTGATCCATGGTGTGTG 58.257 55.000 12.58 2.50 45.47 3.82
4429 6178 1.003580 GGACTGATCCATGGTGTGTGT 59.996 52.381 12.58 5.79 45.47 3.72
4430 6179 2.236146 GGACTGATCCATGGTGTGTGTA 59.764 50.000 12.58 0.00 45.47 2.90
4431 6180 3.118261 GGACTGATCCATGGTGTGTGTAT 60.118 47.826 12.58 0.00 45.47 2.29
4432 6181 4.122776 GACTGATCCATGGTGTGTGTATC 58.877 47.826 12.58 6.02 0.00 2.24
4433 6182 3.519107 ACTGATCCATGGTGTGTGTATCA 59.481 43.478 12.58 10.46 0.00 2.15
4434 6183 4.019411 ACTGATCCATGGTGTGTGTATCAA 60.019 41.667 12.58 0.00 0.00 2.57
4435 6184 4.516323 TGATCCATGGTGTGTGTATCAAG 58.484 43.478 12.58 0.00 0.00 3.02
4436 6185 4.019411 TGATCCATGGTGTGTGTATCAAGT 60.019 41.667 12.58 0.00 0.00 3.16
4437 6186 3.937814 TCCATGGTGTGTGTATCAAGTC 58.062 45.455 12.58 0.00 0.00 3.01
4438 6187 2.672874 CCATGGTGTGTGTATCAAGTCG 59.327 50.000 2.57 0.00 0.00 4.18
4439 6188 3.584834 CATGGTGTGTGTATCAAGTCGA 58.415 45.455 0.00 0.00 0.00 4.20
4440 6189 3.737032 TGGTGTGTGTATCAAGTCGAA 57.263 42.857 0.00 0.00 0.00 3.71
4441 6190 3.386486 TGGTGTGTGTATCAAGTCGAAC 58.614 45.455 0.00 0.00 0.00 3.95
4481 6556 7.308049 CGCTCAGCAACTAGATGTAGTAAGATA 60.308 40.741 2.48 0.00 38.66 1.98
4482 6557 8.353684 GCTCAGCAACTAGATGTAGTAAGATAA 58.646 37.037 2.48 0.00 38.66 1.75
4483 6558 9.891828 CTCAGCAACTAGATGTAGTAAGATAAG 57.108 37.037 2.48 0.00 38.66 1.73
4484 6559 9.628500 TCAGCAACTAGATGTAGTAAGATAAGA 57.372 33.333 2.48 0.00 38.66 2.10
4577 6658 4.228824 ACTGTGTAACTGGGAGTTCCTTA 58.771 43.478 0.00 0.00 39.51 2.69
4628 6711 0.544120 GGCTTTTGGTTCCCATGGGA 60.544 55.000 30.62 30.62 43.52 4.37
4630 6713 1.908619 GCTTTTGGTTCCCATGGGATT 59.091 47.619 34.21 0.00 44.74 3.01
4635 6718 6.685368 GCTTTTGGTTCCCATGGGATTATAAC 60.685 42.308 34.21 26.41 44.74 1.89
4637 6720 3.794399 TGGTTCCCATGGGATTATAACCA 59.206 43.478 35.76 35.76 44.74 3.67
4640 6723 4.112634 TCCCATGGGATTATAACCAAGC 57.887 45.455 30.62 0.00 40.73 4.01
4642 6725 2.228822 CCATGGGATTATAACCAAGCGC 59.771 50.000 2.85 0.00 40.73 5.92
4643 6726 3.149196 CATGGGATTATAACCAAGCGCT 58.851 45.455 2.64 2.64 40.73 5.92
4645 6728 3.626930 TGGGATTATAACCAAGCGCTTT 58.373 40.909 22.51 9.24 32.89 3.51
4649 6732 5.240844 GGGATTATAACCAAGCGCTTTGTAT 59.759 40.000 25.19 20.34 34.87 2.29
4666 6771 6.018180 GCTTTGTATAGTATAGTTGGTGTGGC 60.018 42.308 0.00 0.00 0.00 5.01
4669 6774 4.689612 ATAGTATAGTTGGTGTGGCCTG 57.310 45.455 3.32 0.00 38.35 4.85
4728 6852 2.323999 TTTGGCCCATTCATTCAGGT 57.676 45.000 0.00 0.00 0.00 4.00
4768 6892 6.765989 TGCTACCTATAAATGCAAACACTAGG 59.234 38.462 0.00 0.64 0.00 3.02
4769 6893 6.204882 GCTACCTATAAATGCAAACACTAGGG 59.795 42.308 13.83 0.00 30.72 3.53
4774 6898 2.990740 ATGCAAACACTAGGGGGAAA 57.009 45.000 0.00 0.00 0.00 3.13
4809 6933 1.138266 GGATTAAGCCCAGACGTGCTA 59.862 52.381 0.00 0.00 36.66 3.49
4810 6934 2.202566 GATTAAGCCCAGACGTGCTAC 58.797 52.381 0.00 0.00 36.66 3.58
4811 6935 1.263356 TTAAGCCCAGACGTGCTACT 58.737 50.000 0.00 0.00 36.66 2.57
4812 6936 1.263356 TAAGCCCAGACGTGCTACTT 58.737 50.000 0.00 0.00 36.66 2.24
4813 6937 0.320771 AAGCCCAGACGTGCTACTTG 60.321 55.000 0.00 0.00 36.66 3.16
4814 6938 1.185618 AGCCCAGACGTGCTACTTGA 61.186 55.000 0.00 0.00 35.69 3.02
4815 6939 0.737715 GCCCAGACGTGCTACTTGAG 60.738 60.000 0.00 0.00 0.00 3.02
4827 6985 4.379243 CTTGAGCCACCGCCGAGT 62.379 66.667 0.00 0.00 34.57 4.18
4842 7015 2.704572 CCGAGTGATTCTTGGCTTCTT 58.295 47.619 0.00 0.00 40.45 2.52
4858 7031 5.994668 TGGCTTCTTCTTCTTCTTCTTCTTC 59.005 40.000 0.00 0.00 0.00 2.87
4860 7033 6.710295 GGCTTCTTCTTCTTCTTCTTCTTCTT 59.290 38.462 0.00 0.00 0.00 2.52
4861 7034 7.095229 GGCTTCTTCTTCTTCTTCTTCTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
4896 7134 5.301551 TGTTTTGAGTGATACACAATGGCTT 59.698 36.000 4.75 0.00 36.74 4.35
4898 7136 3.346315 TGAGTGATACACAATGGCTTGG 58.654 45.455 4.75 0.00 36.74 3.61
4899 7137 2.094675 AGTGATACACAATGGCTTGGC 58.905 47.619 4.75 0.00 36.74 4.52
4902 7140 1.331756 GATACACAATGGCTTGGCTCG 59.668 52.381 0.00 0.00 36.64 5.03
4903 7141 0.036164 TACACAATGGCTTGGCTCGT 59.964 50.000 0.00 0.00 36.64 4.18
4916 7180 1.281899 GGCTCGTGTCTGATTAGCAC 58.718 55.000 0.00 3.14 34.85 4.40
4926 7190 6.292973 CGTGTCTGATTAGCACTAGTAGTAGG 60.293 46.154 9.42 0.00 32.41 3.18
4927 7191 6.543100 GTGTCTGATTAGCACTAGTAGTAGGT 59.457 42.308 9.42 6.15 32.10 3.08
4929 7193 6.016943 GTCTGATTAGCACTAGTAGTAGGTGG 60.017 46.154 9.42 0.06 0.00 4.61
4930 7194 5.763355 TGATTAGCACTAGTAGTAGGTGGT 58.237 41.667 9.42 11.61 42.87 4.16
4932 7196 2.736347 AGCACTAGTAGTAGGTGGTGG 58.264 52.381 9.42 0.00 39.66 4.61
4933 7197 1.755380 GCACTAGTAGTAGGTGGTGGG 59.245 57.143 9.42 0.00 0.00 4.61
4936 7200 2.924977 ACTAGTAGTAGGTGGTGGGAGT 59.075 50.000 9.42 0.00 0.00 3.85
4937 7201 2.528673 AGTAGTAGGTGGTGGGAGTC 57.471 55.000 0.00 0.00 0.00 3.36
5004 7468 2.675348 GAGAGACTAAATGCACCACAGC 59.325 50.000 0.00 0.00 0.00 4.40
5036 7500 2.495409 TCGTGTATTCGTGTGTGTGT 57.505 45.000 0.00 0.00 0.00 3.72
5044 7512 1.016653 TCGTGTGTGTGTGTGTGTGG 61.017 55.000 0.00 0.00 0.00 4.17
5060 7528 2.884012 GTGTGGGTGTGTTGATCAATCA 59.116 45.455 12.12 11.28 34.44 2.57
5077 7551 6.803154 TCAATCAATCTCATCTCATCATGC 57.197 37.500 0.00 0.00 0.00 4.06
5115 7589 1.422531 AATTTGGCTGCTCAACCCAA 58.577 45.000 0.00 0.00 36.88 4.12
5117 7591 1.422531 TTTGGCTGCTCAACCCAATT 58.577 45.000 0.00 0.00 38.34 2.32
5120 7594 1.607801 GGCTGCTCAACCCAATTCCC 61.608 60.000 0.00 0.00 0.00 3.97
5121 7595 0.899717 GCTGCTCAACCCAATTCCCA 60.900 55.000 0.00 0.00 0.00 4.37
5123 7597 2.181975 CTGCTCAACCCAATTCCCATT 58.818 47.619 0.00 0.00 0.00 3.16
5126 7600 2.889756 GCTCAACCCAATTCCCATTCCT 60.890 50.000 0.00 0.00 0.00 3.36
5127 7601 3.026694 CTCAACCCAATTCCCATTCCTC 58.973 50.000 0.00 0.00 0.00 3.71
5128 7602 2.110578 CAACCCAATTCCCATTCCTCC 58.889 52.381 0.00 0.00 0.00 4.30
5129 7603 0.636647 ACCCAATTCCCATTCCTCCC 59.363 55.000 0.00 0.00 0.00 4.30
5215 7695 9.097257 TGCTTAAATTGTCCAAGAAAAGAAAAG 57.903 29.630 0.00 0.00 0.00 2.27
5216 7696 9.313118 GCTTAAATTGTCCAAGAAAAGAAAAGA 57.687 29.630 0.00 0.00 0.00 2.52
5221 7701 9.942850 AATTGTCCAAGAAAAGAAAAGAAAAGA 57.057 25.926 0.00 0.00 0.00 2.52
5222 7702 9.942850 ATTGTCCAAGAAAAGAAAAGAAAAGAA 57.057 25.926 0.00 0.00 0.00 2.52
5223 7703 9.771534 TTGTCCAAGAAAAGAAAAGAAAAGAAA 57.228 25.926 0.00 0.00 0.00 2.52
5224 7704 9.771534 TGTCCAAGAAAAGAAAAGAAAAGAAAA 57.228 25.926 0.00 0.00 0.00 2.29
5246 7726 2.870411 GACGTGTGCAAGGTTTCTACTT 59.130 45.455 0.00 0.00 0.00 2.24
5249 7729 4.202182 ACGTGTGCAAGGTTTCTACTTAGA 60.202 41.667 0.00 0.00 0.00 2.10
5293 7773 8.844244 TCTCTTTTCTTTTCTTTCTTGATGAGG 58.156 33.333 0.00 0.00 0.00 3.86
5294 7774 8.752005 TCTTTTCTTTTCTTTCTTGATGAGGA 57.248 30.769 0.00 0.00 0.00 3.71
5295 7775 9.359653 TCTTTTCTTTTCTTTCTTGATGAGGAT 57.640 29.630 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.569641 TCTTTTTGCTAACCGTAATTGTATGTT 58.430 29.630 0.00 0.00 0.00 2.71
20 21 8.958175 TTCTTTTTGCTAACCGTAATTGTATG 57.042 30.769 0.00 0.00 0.00 2.39
88 89 1.552578 ATATACACGCGCTATGGGGA 58.447 50.000 5.73 0.00 34.15 4.81
89 90 3.728076 ATATATACACGCGCTATGGGG 57.272 47.619 5.73 0.00 34.15 4.96
124 125 5.375773 TGATGTATTGGTGTCATACATGGG 58.624 41.667 9.71 0.00 40.40 4.00
127 128 5.007626 GCGTTGATGTATTGGTGTCATACAT 59.992 40.000 5.45 5.45 42.27 2.29
133 134 2.356135 AGGCGTTGATGTATTGGTGTC 58.644 47.619 0.00 0.00 0.00 3.67
134 135 2.489938 AGGCGTTGATGTATTGGTGT 57.510 45.000 0.00 0.00 0.00 4.16
141 142 7.764141 TTGTATATACCTAGGCGTTGATGTA 57.236 36.000 9.30 0.00 0.00 2.29
145 146 6.509656 CACTTTGTATATACCTAGGCGTTGA 58.490 40.000 9.30 0.00 0.00 3.18
151 152 7.254795 GCACTTTGCACTTTGTATATACCTAGG 60.255 40.741 7.41 7.41 44.26 3.02
185 188 3.208594 CATAGCTAAGGATGTTGCAGCA 58.791 45.455 5.46 5.46 34.65 4.41
218 221 0.537188 CATAGGACAAGGTGGCGAGT 59.463 55.000 0.00 0.00 0.00 4.18
225 228 0.988678 GGGAGGCCATAGGACAAGGT 60.989 60.000 5.01 0.00 29.21 3.50
228 231 2.070039 CGGGGAGGCCATAGGACAA 61.070 63.158 5.01 0.00 29.21 3.18
230 233 3.942439 GCGGGGAGGCCATAGGAC 61.942 72.222 5.01 0.00 0.00 3.85
302 305 3.572539 ACAGCCACACACAACGCG 61.573 61.111 3.53 3.53 0.00 6.01
329 332 2.032528 TGGCTGCTCTTTGGGTCG 59.967 61.111 0.00 0.00 0.00 4.79
356 359 2.584418 CTGGCGAGGTCATGCTCG 60.584 66.667 15.79 15.79 44.85 5.03
397 400 2.556287 CGTTCTTCTTGGCGGTGC 59.444 61.111 0.00 0.00 0.00 5.01
437 440 1.602323 TTTGCCCTGGTGCTTACCG 60.602 57.895 8.32 0.00 0.00 4.02
551 554 2.560542 GGAGATGAGTGTCTCGGCATAT 59.439 50.000 0.00 0.00 44.43 1.78
560 563 1.153549 GCCACCGGAGATGAGTGTC 60.154 63.158 9.46 0.00 0.00 3.67
654 725 9.125026 AGACAAGGCGAGAAATGATTTATTATT 57.875 29.630 0.00 0.00 0.00 1.40
792 1116 3.243724 GGGCTTGGACTCTACCAGATAT 58.756 50.000 0.00 0.00 41.19 1.63
793 1117 2.023404 TGGGCTTGGACTCTACCAGATA 60.023 50.000 0.00 0.00 41.19 1.98
830 1154 1.686325 ATGCCGTGCCGTTAGAGGAT 61.686 55.000 0.00 0.00 0.00 3.24
846 1170 5.536161 AGAGAGAGAGAGAGACCATAAATGC 59.464 44.000 0.00 0.00 0.00 3.56
851 1175 4.566837 AGGAGAGAGAGAGAGAGACCATA 58.433 47.826 0.00 0.00 0.00 2.74
852 1176 3.397527 AGGAGAGAGAGAGAGAGACCAT 58.602 50.000 0.00 0.00 0.00 3.55
853 1177 2.845659 AGGAGAGAGAGAGAGAGACCA 58.154 52.381 0.00 0.00 0.00 4.02
855 1179 4.649674 TGACTAGGAGAGAGAGAGAGAGAC 59.350 50.000 0.00 0.00 0.00 3.36
858 1182 5.905331 AGAATGACTAGGAGAGAGAGAGAGA 59.095 44.000 0.00 0.00 0.00 3.10
864 1188 5.686387 CGGAGAAGAATGACTAGGAGAGAGA 60.686 48.000 0.00 0.00 0.00 3.10
866 1190 4.164413 TCGGAGAAGAATGACTAGGAGAGA 59.836 45.833 0.00 0.00 0.00 3.10
867 1191 4.456535 TCGGAGAAGAATGACTAGGAGAG 58.543 47.826 0.00 0.00 0.00 3.20
868 1192 4.505324 TCGGAGAAGAATGACTAGGAGA 57.495 45.455 0.00 0.00 0.00 3.71
869 1193 4.083537 CGATCGGAGAAGAATGACTAGGAG 60.084 50.000 7.38 0.00 43.58 3.69
870 1194 3.815962 CGATCGGAGAAGAATGACTAGGA 59.184 47.826 7.38 0.00 43.58 2.94
871 1195 3.610585 GCGATCGGAGAAGAATGACTAGG 60.611 52.174 18.30 0.00 43.58 3.02
872 1196 3.252215 AGCGATCGGAGAAGAATGACTAG 59.748 47.826 18.30 0.00 43.58 2.57
873 1197 3.003793 CAGCGATCGGAGAAGAATGACTA 59.996 47.826 18.30 0.00 43.58 2.59
874 1198 2.028130 AGCGATCGGAGAAGAATGACT 58.972 47.619 18.30 0.00 43.58 3.41
875 1199 2.123342 CAGCGATCGGAGAAGAATGAC 58.877 52.381 18.30 0.00 43.58 3.06
876 1200 1.536922 GCAGCGATCGGAGAAGAATGA 60.537 52.381 18.30 0.00 43.58 2.57
877 1201 0.857935 GCAGCGATCGGAGAAGAATG 59.142 55.000 18.30 0.00 43.58 2.67
878 1202 0.249657 GGCAGCGATCGGAGAAGAAT 60.250 55.000 18.30 0.00 43.58 2.40
879 1203 1.141881 GGCAGCGATCGGAGAAGAA 59.858 57.895 18.30 0.00 43.58 2.52
880 1204 2.808315 GGCAGCGATCGGAGAAGA 59.192 61.111 18.30 0.00 43.58 2.87
881 1205 2.656651 CGGCAGCGATCGGAGAAG 60.657 66.667 18.30 0.00 43.58 2.85
882 1206 3.411418 GACGGCAGCGATCGGAGAA 62.411 63.158 18.30 0.00 43.58 2.87
883 1207 3.889044 GACGGCAGCGATCGGAGA 61.889 66.667 18.30 0.00 45.75 3.71
884 1208 4.933064 GGACGGCAGCGATCGGAG 62.933 72.222 18.30 1.88 0.00 4.63
911 1235 0.103208 CGGATTTGGTCGGAGAGAGG 59.897 60.000 0.00 0.00 36.95 3.69
957 1294 4.435436 TGCTCCGCCGTGTGCTAG 62.435 66.667 0.00 0.00 38.05 3.42
958 1295 4.435436 CTGCTCCGCCGTGTGCTA 62.435 66.667 0.00 0.00 38.05 3.49
984 1321 4.715523 ATGGTCGTGTTGGGCCGG 62.716 66.667 0.00 0.00 0.00 6.13
986 1323 3.061848 CCATGGTCGTGTTGGGCC 61.062 66.667 2.57 0.00 0.00 5.80
987 1324 3.747976 GCCATGGTCGTGTTGGGC 61.748 66.667 14.67 0.00 0.00 5.36
990 1327 4.101790 GGCGCCATGGTCGTGTTG 62.102 66.667 24.80 4.78 0.00 3.33
1092 1431 4.219999 GAGAGGGAGCCGAGCAGC 62.220 72.222 0.00 0.00 0.00 5.25
1156 1495 6.072230 GGGGAGTGAGAAAGAAGAGAAATTTG 60.072 42.308 0.00 0.00 0.00 2.32
1431 2787 2.613977 CCGAGGAGCAGACTTTGTTGAT 60.614 50.000 0.00 0.00 0.00 2.57
1478 2836 2.554032 CAAGCAACTTTGTAGGTGAGGG 59.446 50.000 0.00 0.00 41.90 4.30
1546 2907 3.873883 GCGAGCATGACAGCTGCC 61.874 66.667 15.27 2.30 46.75 4.85
1678 3039 3.728845 TGCTCCACCGAAAGCTATAATC 58.271 45.455 0.00 0.00 39.31 1.75
1699 3066 3.243724 AGCTACACAAGAGAGGACCTTT 58.756 45.455 0.00 0.00 0.00 3.11
1701 3068 2.614134 AGCTACACAAGAGAGGACCT 57.386 50.000 0.00 0.00 0.00 3.85
1766 3133 2.406616 ATCATGCCCAAACCGCGAC 61.407 57.895 8.23 0.00 0.00 5.19
1868 3235 3.370846 CCCTTGTAATGGAGTGCTGATCA 60.371 47.826 0.00 0.00 31.60 2.92
1880 3247 1.561542 ACCTGCTCCTCCCTTGTAATG 59.438 52.381 0.00 0.00 0.00 1.90
1921 3288 8.735315 TGTACAAAAAGTCTGAAAATGACAAGA 58.265 29.630 0.00 0.00 36.94 3.02
1927 3294 6.272318 TGGCTGTACAAAAAGTCTGAAAATG 58.728 36.000 0.00 0.00 0.00 2.32
1929 3296 5.650266 TCTGGCTGTACAAAAAGTCTGAAAA 59.350 36.000 0.00 0.00 0.00 2.29
1963 3333 5.348997 AGCAAAGTTCGTTCAGATAACTAGC 59.651 40.000 0.00 0.00 35.93 3.42
2155 3525 6.462909 GGAATTTCAACCTGGTCAACAAGAAT 60.463 38.462 0.00 0.00 0.00 2.40
2156 3526 5.163457 GGAATTTCAACCTGGTCAACAAGAA 60.163 40.000 0.00 0.00 0.00 2.52
2158 3528 4.342092 AGGAATTTCAACCTGGTCAACAAG 59.658 41.667 0.00 0.00 34.99 3.16
2208 3578 4.802248 GCAAGACTCTCATCCTTGTCAACT 60.802 45.833 0.00 0.00 39.41 3.16
2254 3628 9.447279 TCCTTCCTTAAGATGGTCAATAGATTA 57.553 33.333 3.36 0.00 40.11 1.75
2258 3632 8.986929 AATTCCTTCCTTAAGATGGTCAATAG 57.013 34.615 3.36 0.00 40.11 1.73
2262 3636 7.032598 AGAAATTCCTTCCTTAAGATGGTCA 57.967 36.000 3.36 0.00 40.11 4.02
2300 3675 7.470900 GGTTTTCAAGAAAATCAAAACATGCA 58.529 30.769 12.38 0.00 41.64 3.96
2344 3720 8.969260 TCTGTATTCTATTGAATCTGCAACAT 57.031 30.769 5.63 0.00 41.55 2.71
2345 3721 8.791327 TTCTGTATTCTATTGAATCTGCAACA 57.209 30.769 5.63 4.38 41.55 3.33
2377 3753 3.694072 GCTGATGGTTACTATTGCCACAA 59.306 43.478 0.00 0.00 34.84 3.33
2401 3777 7.036863 ACCAGAAGGAGAAGAATAAAATGGGTA 60.037 37.037 0.00 0.00 38.69 3.69
2435 3811 4.260375 GCACATAGATTACCAGAGCAAACG 60.260 45.833 0.00 0.00 0.00 3.60
2440 3816 3.797039 TGTGCACATAGATTACCAGAGC 58.203 45.455 17.42 0.00 0.00 4.09
2441 3817 5.016051 ACTGTGCACATAGATTACCAGAG 57.984 43.478 22.00 6.16 0.00 3.35
2448 3824 4.099419 TGGATCGTACTGTGCACATAGATT 59.901 41.667 22.00 3.96 0.00 2.40
2514 3890 0.179163 GAATTGCCGGCAGTTACAGC 60.179 55.000 33.81 19.34 0.00 4.40
2556 3932 4.925061 AAACGACTAGTCAGAGTACGAG 57.075 45.455 22.37 5.49 0.00 4.18
2585 3961 6.560003 TTCCATCTAAGAAGCTATCCACAA 57.440 37.500 0.00 0.00 0.00 3.33
2595 3971 5.248640 TCTGCAAGGTTTCCATCTAAGAAG 58.751 41.667 0.00 0.00 0.00 2.85
2659 4036 8.186821 AGCTTACATTCAAATGCTCTATTCAAC 58.813 33.333 2.66 0.00 40.04 3.18
2667 4044 7.076842 TCAACTAGCTTACATTCAAATGCTC 57.923 36.000 0.00 0.00 40.04 4.26
2689 4066 5.364735 TCACAGAGCTCAATCCTCAATATCA 59.635 40.000 17.77 0.00 0.00 2.15
2693 4070 4.706035 GATCACAGAGCTCAATCCTCAAT 58.294 43.478 17.77 0.00 0.00 2.57
2694 4071 3.429960 CGATCACAGAGCTCAATCCTCAA 60.430 47.826 17.77 0.00 0.00 3.02
2695 4072 2.100418 CGATCACAGAGCTCAATCCTCA 59.900 50.000 17.77 0.00 0.00 3.86
2696 4073 2.360483 TCGATCACAGAGCTCAATCCTC 59.640 50.000 17.77 6.06 0.00 3.71
2697 4074 2.382882 TCGATCACAGAGCTCAATCCT 58.617 47.619 17.77 0.00 0.00 3.24
2698 4075 2.879002 TCGATCACAGAGCTCAATCC 57.121 50.000 17.77 0.00 0.00 3.01
2699 4076 3.551082 CACTTCGATCACAGAGCTCAATC 59.449 47.826 17.77 11.64 0.00 2.67
2791 4395 9.383519 GGTAGTCTGATCATGTAAAAATGAAGA 57.616 33.333 0.00 0.00 39.90 2.87
2795 4399 9.388506 AGAAGGTAGTCTGATCATGTAAAAATG 57.611 33.333 0.00 0.00 0.00 2.32
2993 4617 1.064463 ACCATCGCTGAACATGGGAAT 60.064 47.619 0.00 0.00 43.59 3.01
2998 4622 2.474561 AGCACCATCGCTGAACATG 58.525 52.632 0.00 0.00 41.85 3.21
3031 4658 1.002011 GGCTTTCTCCCCACTGACC 60.002 63.158 0.00 0.00 0.00 4.02
3076 4703 0.671251 CAGCGTACCCTCTGATCCTC 59.329 60.000 0.00 0.00 32.26 3.71
3110 4747 8.158169 TGATTAATGACAAGGCATGTAAGATC 57.842 34.615 0.00 0.00 44.12 2.75
3174 4812 6.244654 TCATGATAACAAGAACAATGGGTCA 58.755 36.000 0.00 0.00 0.00 4.02
3194 4833 3.313012 TGTCGGTACAGGTCTTTCATG 57.687 47.619 0.00 0.00 0.00 3.07
3199 4843 4.287552 AGGATAATGTCGGTACAGGTCTT 58.712 43.478 0.00 0.00 39.49 3.01
3200 4844 3.912248 AGGATAATGTCGGTACAGGTCT 58.088 45.455 0.00 0.00 39.49 3.85
3201 4845 4.667519 AAGGATAATGTCGGTACAGGTC 57.332 45.455 0.00 0.00 39.49 3.85
3202 4846 4.141779 GGAAAGGATAATGTCGGTACAGGT 60.142 45.833 0.00 0.00 39.49 4.00
3203 4847 4.377897 GGAAAGGATAATGTCGGTACAGG 58.622 47.826 0.00 0.00 39.49 4.00
3204 4848 4.377897 GGGAAAGGATAATGTCGGTACAG 58.622 47.826 0.00 0.00 39.49 2.74
3211 4855 4.164221 TGAGACAGGGGAAAGGATAATGTC 59.836 45.833 0.00 0.00 36.65 3.06
3248 4892 3.118000 AGGATCATTGAATGAGAGCAGCA 60.118 43.478 13.79 0.00 43.53 4.41
3252 4896 5.131784 AGGAAAGGATCATTGAATGAGAGC 58.868 41.667 13.79 5.62 43.53 4.09
3260 4904 7.157347 CGAATCATAGAGGAAAGGATCATTGA 58.843 38.462 0.00 0.00 0.00 2.57
3314 4959 8.589629 GCAACAAACTCTTTCTAATAATGCATG 58.410 33.333 0.00 0.00 0.00 4.06
3340 4985 6.347725 GCCTGAAGTTGTAAGTAGTGTCAATG 60.348 42.308 0.00 0.00 0.00 2.82
3350 4995 2.851195 CAGGTGCCTGAAGTTGTAAGT 58.149 47.619 12.66 0.00 46.30 2.24
3421 5066 0.532573 TGTGAATCTCGGAGACCTGC 59.467 55.000 10.41 2.51 0.00 4.85
3471 5116 7.931578 ATGAAAAGACCATTAACATACCGAA 57.068 32.000 0.00 0.00 0.00 4.30
3512 5166 1.004044 CACCCTCATGCTTCAGGTCTT 59.996 52.381 0.00 0.00 0.00 3.01
3579 5236 2.500910 AGAGATGCCAAGAAGTCTCTGG 59.499 50.000 3.18 5.61 44.14 3.86
3680 5340 5.366477 AGTTTTCCCTGAAATGGTGAAATGT 59.634 36.000 0.00 0.00 31.34 2.71
3709 5369 0.948678 GAAACAGCGCCACCACTTAA 59.051 50.000 2.29 0.00 0.00 1.85
3995 5716 1.476085 TGTGGTGGAGCAAAAACACTG 59.524 47.619 2.95 0.00 35.53 3.66
4013 5734 5.799213 CCCTGTTTCTGTCTAAGAATCTGT 58.201 41.667 0.00 0.00 44.46 3.41
4225 5946 8.523658 GGAAAAGCTCTATTCCACTTGTTAATT 58.476 33.333 16.80 0.00 43.73 1.40
4250 5971 0.179089 CTGGTCAGAATCGCTCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
4254 5989 2.879002 TCATCTGGTCAGAATCGCTC 57.121 50.000 4.67 0.00 41.36 5.03
4267 6002 3.149981 AGATTGCCTGCATCATCATCTG 58.850 45.455 6.58 0.00 0.00 2.90
4268 6003 3.510531 AGATTGCCTGCATCATCATCT 57.489 42.857 6.58 2.86 0.00 2.90
4300 6035 0.667487 CACATCACAGCGAGGAACGT 60.667 55.000 0.00 0.00 44.60 3.99
4346 6085 1.170290 ACAACCTTTACACCGCAGCC 61.170 55.000 0.00 0.00 0.00 4.85
4351 6093 3.500680 AGCATACAACAACCTTTACACCG 59.499 43.478 0.00 0.00 0.00 4.94
4372 6114 3.925299 CAGCTCACACAAGATACAGTCAG 59.075 47.826 0.00 0.00 0.00 3.51
4381 6123 1.344438 CCCACTACAGCTCACACAAGA 59.656 52.381 0.00 0.00 0.00 3.02
4393 6142 2.285368 CCTGCCCTCCCCACTACA 60.285 66.667 0.00 0.00 0.00 2.74
4400 6149 2.447714 GGATCAGTCCTGCCCTCCC 61.448 68.421 0.00 0.00 41.60 4.30
4401 6150 1.059006 ATGGATCAGTCCTGCCCTCC 61.059 60.000 0.00 5.68 45.32 4.30
4402 6151 0.108207 CATGGATCAGTCCTGCCCTC 59.892 60.000 0.00 0.00 45.32 4.30
4403 6152 1.351080 CCATGGATCAGTCCTGCCCT 61.351 60.000 5.56 0.00 45.32 5.19
4404 6153 1.150081 CCATGGATCAGTCCTGCCC 59.850 63.158 5.56 0.00 45.32 5.36
4405 6154 0.465097 CACCATGGATCAGTCCTGCC 60.465 60.000 21.47 0.00 45.32 4.85
4406 6155 0.254178 ACACCATGGATCAGTCCTGC 59.746 55.000 21.47 0.00 45.32 4.85
4407 6156 1.280133 ACACACCATGGATCAGTCCTG 59.720 52.381 21.47 5.91 45.32 3.86
4408 6157 1.280133 CACACACCATGGATCAGTCCT 59.720 52.381 21.47 0.00 45.32 3.85
4409 6158 1.003580 ACACACACCATGGATCAGTCC 59.996 52.381 21.47 0.00 45.31 3.85
4412 6161 4.141233 TGATACACACACCATGGATCAG 57.859 45.455 21.47 7.72 0.00 2.90
4426 6175 4.619760 TCATGTTCGTTCGACTTGATACAC 59.380 41.667 0.00 0.00 0.00 2.90
4428 6177 5.718246 CATCATGTTCGTTCGACTTGATAC 58.282 41.667 16.55 6.01 38.85 2.24
4429 6178 4.267690 GCATCATGTTCGTTCGACTTGATA 59.732 41.667 16.55 0.00 38.85 2.15
4430 6179 3.062639 GCATCATGTTCGTTCGACTTGAT 59.937 43.478 13.89 13.89 40.45 2.57
4431 6180 2.411748 GCATCATGTTCGTTCGACTTGA 59.588 45.455 0.00 5.45 36.18 3.02
4432 6181 2.157474 TGCATCATGTTCGTTCGACTTG 59.843 45.455 0.00 0.73 0.00 3.16
4433 6182 2.412870 TGCATCATGTTCGTTCGACTT 58.587 42.857 0.00 0.00 0.00 3.01
4434 6183 2.078849 TGCATCATGTTCGTTCGACT 57.921 45.000 0.00 0.00 0.00 4.18
4435 6184 2.595188 CGATGCATCATGTTCGTTCGAC 60.595 50.000 25.70 0.00 0.00 4.20
4436 6185 1.587946 CGATGCATCATGTTCGTTCGA 59.412 47.619 25.70 0.00 0.00 3.71
4437 6186 1.912980 GCGATGCATCATGTTCGTTCG 60.913 52.381 25.70 10.81 34.24 3.95
4438 6187 1.328680 AGCGATGCATCATGTTCGTTC 59.671 47.619 25.70 1.49 34.24 3.95
4439 6188 1.328680 GAGCGATGCATCATGTTCGTT 59.671 47.619 25.70 10.75 34.24 3.85
4440 6189 0.933097 GAGCGATGCATCATGTTCGT 59.067 50.000 25.70 4.04 34.24 3.85
4441 6190 0.932399 TGAGCGATGCATCATGTTCG 59.068 50.000 25.70 13.75 34.83 3.95
4481 6556 1.558294 TCCTCTGCTGCACATCATCTT 59.442 47.619 0.00 0.00 0.00 2.40
4482 6557 1.139256 CTCCTCTGCTGCACATCATCT 59.861 52.381 0.00 0.00 0.00 2.90
4483 6558 1.138464 TCTCCTCTGCTGCACATCATC 59.862 52.381 0.00 0.00 0.00 2.92
4484 6559 1.201424 TCTCCTCTGCTGCACATCAT 58.799 50.000 0.00 0.00 0.00 2.45
4485 6560 1.134491 CATCTCCTCTGCTGCACATCA 60.134 52.381 0.00 0.00 0.00 3.07
4529 6610 1.539827 GCTTCACAACATTTACGGGCT 59.460 47.619 0.00 0.00 0.00 5.19
4530 6611 1.268352 TGCTTCACAACATTTACGGGC 59.732 47.619 0.00 0.00 0.00 6.13
4531 6612 3.634568 TTGCTTCACAACATTTACGGG 57.365 42.857 0.00 0.00 31.73 5.28
4532 6613 6.861055 AGTTATTTGCTTCACAACATTTACGG 59.139 34.615 0.00 0.00 38.23 4.02
4533 6614 7.378461 ACAGTTATTTGCTTCACAACATTTACG 59.622 33.333 0.00 0.00 38.23 3.18
4534 6615 8.479280 CACAGTTATTTGCTTCACAACATTTAC 58.521 33.333 0.00 0.00 38.23 2.01
4577 6658 3.507411 TCTACCAGTACAAAGCTCCAGT 58.493 45.455 0.00 0.00 0.00 4.00
4628 6711 9.720769 ATACTATACAAAGCGCTTGGTTATAAT 57.279 29.630 33.71 22.68 39.56 1.28
4630 6713 9.850628 CTATACTATACAAAGCGCTTGGTTATA 57.149 33.333 33.71 24.81 39.56 0.98
4635 6718 6.073765 CCAACTATACTATACAAAGCGCTTGG 60.074 42.308 25.80 24.37 39.56 3.61
4637 6720 6.479001 CACCAACTATACTATACAAAGCGCTT 59.521 38.462 18.98 18.98 0.00 4.68
4640 6723 6.200286 CCACACCAACTATACTATACAAAGCG 59.800 42.308 0.00 0.00 0.00 4.68
4642 6725 6.482308 GGCCACACCAACTATACTATACAAAG 59.518 42.308 0.00 0.00 38.86 2.77
4643 6726 6.157297 AGGCCACACCAACTATACTATACAAA 59.843 38.462 5.01 0.00 43.14 2.83
4645 6728 5.069914 CAGGCCACACCAACTATACTATACA 59.930 44.000 5.01 0.00 43.14 2.29
4649 6732 2.769663 CCAGGCCACACCAACTATACTA 59.230 50.000 5.01 0.00 43.14 1.82
4666 6771 3.776969 TCCTAATATGCATCCTAGCCAGG 59.223 47.826 0.19 1.84 44.17 4.45
4669 6774 6.098982 ACAGTATCCTAATATGCATCCTAGCC 59.901 42.308 0.19 0.00 0.00 3.93
4678 6802 8.436200 GTTGATTTCGACAGTATCCTAATATGC 58.564 37.037 0.00 0.00 0.00 3.14
4712 6836 5.011023 CCTTTTATACCTGAATGAATGGGCC 59.989 44.000 0.00 0.00 0.00 5.80
4744 6868 6.204882 CCCTAGTGTTTGCATTTATAGGTAGC 59.795 42.308 10.06 0.00 0.00 3.58
4749 6873 5.690865 TCCCCCTAGTGTTTGCATTTATAG 58.309 41.667 0.00 0.00 0.00 1.31
4768 6892 4.164221 TCCTTCATCATCTACACTTTCCCC 59.836 45.833 0.00 0.00 0.00 4.81
4769 6893 5.359194 TCCTTCATCATCTACACTTTCCC 57.641 43.478 0.00 0.00 0.00 3.97
4774 6898 6.465035 GGGCTTAATCCTTCATCATCTACACT 60.465 42.308 0.00 0.00 0.00 3.55
4809 6933 4.379243 CTCGGCGGTGGCTCAAGT 62.379 66.667 7.21 0.00 39.81 3.16
4810 6934 4.379243 ACTCGGCGGTGGCTCAAG 62.379 66.667 7.21 0.00 39.81 3.02
4811 6935 4.680237 CACTCGGCGGTGGCTCAA 62.680 66.667 17.20 0.00 39.81 3.02
4813 6937 3.665675 AATCACTCGGCGGTGGCTC 62.666 63.158 22.21 0.00 39.81 4.70
4814 6938 3.665675 GAATCACTCGGCGGTGGCT 62.666 63.158 22.21 13.03 39.81 4.75
4815 6939 3.195698 GAATCACTCGGCGGTGGC 61.196 66.667 22.21 12.17 37.75 5.01
4827 6985 5.874093 AGAAGAAGAAGAAGCCAAGAATCA 58.126 37.500 0.00 0.00 0.00 2.57
4839 6997 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
4842 7015 8.482128 ACAAGAAGAAGAAGAAGAAGAAGAAGA 58.518 33.333 0.00 0.00 0.00 2.87
4858 7031 7.530010 TCACTCAAAACAAGAACAAGAAGAAG 58.470 34.615 0.00 0.00 0.00 2.85
4860 7033 7.630242 ATCACTCAAAACAAGAACAAGAAGA 57.370 32.000 0.00 0.00 0.00 2.87
4861 7034 8.397906 TGTATCACTCAAAACAAGAACAAGAAG 58.602 33.333 0.00 0.00 0.00 2.85
4896 7134 0.894835 TGCTAATCAGACACGAGCCA 59.105 50.000 0.00 0.00 31.98 4.75
4898 7136 2.285827 AGTGCTAATCAGACACGAGC 57.714 50.000 0.00 0.00 39.31 5.03
4899 7137 4.624336 ACTAGTGCTAATCAGACACGAG 57.376 45.455 0.00 0.00 41.19 4.18
4902 7140 6.543100 ACCTACTACTAGTGCTAATCAGACAC 59.457 42.308 5.39 0.00 34.48 3.67
4903 7141 6.542735 CACCTACTACTAGTGCTAATCAGACA 59.457 42.308 5.39 0.00 0.00 3.41
4916 7180 3.553904 GACTCCCACCACCTACTACTAG 58.446 54.545 0.00 0.00 0.00 2.57
4926 7190 1.590147 CACTACGGACTCCCACCAC 59.410 63.158 0.00 0.00 0.00 4.16
4927 7191 1.608336 CCACTACGGACTCCCACCA 60.608 63.158 0.00 0.00 36.56 4.17
4929 7193 0.896940 TCACCACTACGGACTCCCAC 60.897 60.000 0.00 0.00 38.63 4.61
4930 7194 0.040646 ATCACCACTACGGACTCCCA 59.959 55.000 0.00 0.00 38.63 4.37
4932 7196 0.179108 GCATCACCACTACGGACTCC 60.179 60.000 0.00 0.00 38.63 3.85
4933 7197 0.525668 CGCATCACCACTACGGACTC 60.526 60.000 0.00 0.00 38.63 3.36
4936 7200 1.955495 ATGCGCATCACCACTACGGA 61.955 55.000 19.28 0.00 38.63 4.69
4937 7201 1.521457 ATGCGCATCACCACTACGG 60.521 57.895 19.28 0.00 42.50 4.02
5004 7468 3.510388 ATACACGATGACAGACACCAG 57.490 47.619 0.00 0.00 0.00 4.00
5036 7500 1.065126 TGATCAACACACCCACACACA 60.065 47.619 0.00 0.00 0.00 3.72
5077 7551 1.200519 TTGACCTCCCCTAACCATCG 58.799 55.000 0.00 0.00 0.00 3.84
5081 7555 3.096852 CCAAATTTGACCTCCCCTAACC 58.903 50.000 19.86 0.00 0.00 2.85
5082 7556 2.496070 GCCAAATTTGACCTCCCCTAAC 59.504 50.000 19.86 0.00 0.00 2.34
5083 7557 2.381961 AGCCAAATTTGACCTCCCCTAA 59.618 45.455 19.86 0.00 0.00 2.69
5115 7589 2.068977 GATGGAGGGAGGAATGGGAAT 58.931 52.381 0.00 0.00 0.00 3.01
5117 7591 0.649992 AGATGGAGGGAGGAATGGGA 59.350 55.000 0.00 0.00 0.00 4.37
5120 7594 4.164988 ACTTTACAGATGGAGGGAGGAATG 59.835 45.833 0.00 0.00 0.00 2.67
5121 7595 4.164988 CACTTTACAGATGGAGGGAGGAAT 59.835 45.833 0.00 0.00 0.00 3.01
5123 7597 3.107601 CACTTTACAGATGGAGGGAGGA 58.892 50.000 0.00 0.00 0.00 3.71
5126 7600 3.519510 CCTTCACTTTACAGATGGAGGGA 59.480 47.826 0.00 0.00 32.43 4.20
5127 7601 3.370953 CCCTTCACTTTACAGATGGAGGG 60.371 52.174 2.37 2.37 32.43 4.30
5128 7602 3.878778 CCCTTCACTTTACAGATGGAGG 58.121 50.000 0.00 0.00 32.43 4.30
5129 7603 3.274288 GCCCTTCACTTTACAGATGGAG 58.726 50.000 0.00 0.00 32.43 3.86
5215 7695 3.791353 CCTTGCACACGTCTTTTCTTTTC 59.209 43.478 0.00 0.00 0.00 2.29
5216 7696 3.192633 ACCTTGCACACGTCTTTTCTTTT 59.807 39.130 0.00 0.00 0.00 2.27
5217 7697 2.752903 ACCTTGCACACGTCTTTTCTTT 59.247 40.909 0.00 0.00 0.00 2.52
5218 7698 2.365582 ACCTTGCACACGTCTTTTCTT 58.634 42.857 0.00 0.00 0.00 2.52
5219 7699 2.038387 ACCTTGCACACGTCTTTTCT 57.962 45.000 0.00 0.00 0.00 2.52
5220 7700 2.844122 AACCTTGCACACGTCTTTTC 57.156 45.000 0.00 0.00 0.00 2.29
5221 7701 2.752903 AGAAACCTTGCACACGTCTTTT 59.247 40.909 0.00 0.00 0.00 2.27
5222 7702 2.365582 AGAAACCTTGCACACGTCTTT 58.634 42.857 0.00 0.00 0.00 2.52
5223 7703 2.038387 AGAAACCTTGCACACGTCTT 57.962 45.000 0.00 0.00 0.00 3.01
5224 7704 2.102588 AGTAGAAACCTTGCACACGTCT 59.897 45.455 0.00 0.00 0.00 4.18
5225 7705 2.480845 AGTAGAAACCTTGCACACGTC 58.519 47.619 0.00 0.00 0.00 4.34
5267 7747 8.844244 CCTCATCAAGAAAGAAAAGAAAAGAGA 58.156 33.333 0.00 0.00 0.00 3.10
5268 7748 8.844244 TCCTCATCAAGAAAGAAAAGAAAAGAG 58.156 33.333 0.00 0.00 0.00 2.85
5269 7749 8.752005 TCCTCATCAAGAAAGAAAAGAAAAGA 57.248 30.769 0.00 0.00 0.00 2.52
5272 7752 9.799106 AGTATCCTCATCAAGAAAGAAAAGAAA 57.201 29.630 0.00 0.00 0.00 2.52
5273 7753 9.442047 GAGTATCCTCATCAAGAAAGAAAAGAA 57.558 33.333 0.00 0.00 37.67 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.