Multiple sequence alignment - TraesCS3B01G007500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G007500 chr3B 100.000 3673 0 0 1 3673 3880891 3877219 0.000000e+00 6783.0
1 TraesCS3B01G007500 chr3B 98.553 1106 13 3 951 2054 4763781 4762677 0.000000e+00 1951.0
2 TraesCS3B01G007500 chr3B 99.790 953 2 0 1 953 4765620 4764668 0.000000e+00 1749.0
3 TraesCS3B01G007500 chr3B 95.764 661 25 2 2083 2740 4757626 4756966 0.000000e+00 1062.0
4 TraesCS3B01G007500 chr3B 96.239 585 18 1 3089 3673 4756779 4756199 0.000000e+00 955.0
5 TraesCS3B01G007500 chr5A 81.146 419 48 19 2702 3092 669570100 669570515 1.280000e-79 307.0
6 TraesCS3B01G007500 chr5D 83.239 352 34 15 2743 3088 363978701 363978369 2.140000e-77 300.0
7 TraesCS3B01G007500 chr5D 94.595 185 10 0 2908 3092 60770076 60770260 1.670000e-73 287.0
8 TraesCS3B01G007500 chr5D 80.495 323 51 10 2720 3035 527894008 527893691 1.700000e-58 237.0
9 TraesCS3B01G007500 chr5D 93.617 141 8 1 1914 2054 482316940 482316801 3.720000e-50 209.0
10 TraesCS3B01G007500 chr6A 97.701 174 3 1 2735 2908 96715950 96716122 7.710000e-77 298.0
11 TraesCS3B01G007500 chr6A 94.928 138 5 2 1924 2061 155544102 155543967 7.990000e-52 215.0
12 TraesCS3B01G007500 chr3A 97.674 172 4 0 2743 2914 12673012 12673183 2.770000e-76 296.0
13 TraesCS3B01G007500 chr7B 95.161 186 7 2 2745 2930 730811974 730812157 3.590000e-75 292.0
14 TraesCS3B01G007500 chr7B 94.776 134 7 0 1921 2054 481067821 481067954 3.720000e-50 209.0
15 TraesCS3B01G007500 chr1A 96.111 180 4 2 2745 2922 33222190 33222012 1.290000e-74 291.0
16 TraesCS3B01G007500 chr7D 94.118 187 11 0 2908 3094 410587906 410588092 6.000000e-73 285.0
17 TraesCS3B01G007500 chr7D 92.063 63 5 0 1671 1733 11802551 11802489 5.050000e-14 89.8
18 TraesCS3B01G007500 chr2B 94.595 185 9 1 2908 3092 491245653 491245836 6.000000e-73 285.0
19 TraesCS3B01G007500 chr2B 94.928 138 5 2 1924 2061 205355512 205355377 7.990000e-52 215.0
20 TraesCS3B01G007500 chr4D 92.462 199 13 1 2894 3092 82575017 82574821 2.160000e-72 283.0
21 TraesCS3B01G007500 chr2A 94.536 183 10 0 2908 3090 13833466 13833284 2.160000e-72 283.0
22 TraesCS3B01G007500 chr2A 94.245 139 7 1 1923 2061 378015911 378016048 1.030000e-50 211.0
23 TraesCS3B01G007500 chr6D 94.054 185 11 0 2908 3092 145336987 145337171 7.770000e-72 281.0
24 TraesCS3B01G007500 chr6B 83.607 305 41 7 2735 3035 542764381 542764082 1.000000e-70 278.0
25 TraesCS3B01G007500 chr6B 85.057 261 31 5 2729 2986 381742964 381742709 3.640000e-65 259.0
26 TraesCS3B01G007500 chr4A 85.091 275 31 6 2772 3038 171217005 171217277 4.670000e-69 272.0
27 TraesCS3B01G007500 chr4A 94.928 138 5 2 1924 2061 534233924 534233789 7.990000e-52 215.0
28 TraesCS3B01G007500 chr5B 95.522 134 6 0 1921 2054 513783284 513783151 7.990000e-52 215.0
29 TraesCS3B01G007500 chr4B 94.928 138 5 2 1924 2061 126843416 126843281 7.990000e-52 215.0
30 TraesCS3B01G007500 chrUn 92.063 63 5 0 1671 1733 89750091 89750029 5.050000e-14 89.8
31 TraesCS3B01G007500 chrUn 89.855 69 7 0 1665 1733 360225055 360225123 5.050000e-14 89.8
32 TraesCS3B01G007500 chr1B 93.333 45 3 0 1684 1728 32776413 32776457 2.370000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G007500 chr3B 3877219 3880891 3672 True 6783.0 6783 100.0000 1 3673 1 chr3B.!!$R1 3672
1 TraesCS3B01G007500 chr3B 4762677 4765620 2943 True 1850.0 1951 99.1715 1 2054 2 chr3B.!!$R3 2053
2 TraesCS3B01G007500 chr3B 4756199 4757626 1427 True 1008.5 1062 96.0015 2083 3673 2 chr3B.!!$R2 1590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 1.336440 CAAAACTCGTTGGACATGGCA 59.664 47.619 0.0 0.0 0.0 4.92 F
2077 2968 0.605589 AAACTCCGGTAACCTGCTGC 60.606 55.000 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 3011 0.179156 CGTAATACTCGGTGGCACGT 60.179 55.0 12.17 6.72 34.94 4.49 R
3087 4016 0.384669 GGGAGACTTCATACCGGTCG 59.615 60.0 12.40 3.35 35.42 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 347 1.336440 CAAAACTCGTTGGACATGGCA 59.664 47.619 0.00 0.00 0.00 4.92
399 400 7.306167 GCAATCTATGATTATTTGTTGTTGCGG 60.306 37.037 0.00 0.00 0.00 5.69
1003 1893 2.722487 ATCGACCGAGTCCGATGC 59.278 61.111 2.49 0.00 43.00 3.91
1455 2346 2.534019 CCGGTGGCGGAATTCATCG 61.534 63.158 7.93 3.73 37.26 3.84
1502 2393 3.827898 AGGAGCTGCTACGACGGC 61.828 66.667 5.69 0.00 42.55 5.68
1581 2472 1.739466 TCATCACATTGCTCGGCTTTC 59.261 47.619 0.00 0.00 0.00 2.62
1784 2675 1.718757 GCCCCATTGTGAAGCTAGCG 61.719 60.000 9.55 0.00 0.00 4.26
1908 2799 2.435059 GCAACCTCCAGGAGTCGC 60.435 66.667 15.86 10.58 38.94 5.19
1993 2884 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
2029 2920 9.323985 AGAGTATAGATTCACTCATTTTGCTTC 57.676 33.333 4.70 0.00 42.99 3.86
2054 2945 7.328493 TCGTATGTAGTCACTTGTTGAAATCTG 59.672 37.037 0.00 0.00 35.39 2.90
2055 2946 5.673337 TGTAGTCACTTGTTGAAATCTGC 57.327 39.130 0.00 0.00 35.39 4.26
2056 2947 5.122519 TGTAGTCACTTGTTGAAATCTGCA 58.877 37.500 0.00 0.00 35.39 4.41
2057 2948 5.764686 TGTAGTCACTTGTTGAAATCTGCAT 59.235 36.000 0.00 0.00 35.39 3.96
2058 2949 6.934083 TGTAGTCACTTGTTGAAATCTGCATA 59.066 34.615 0.00 0.00 35.39 3.14
2059 2950 6.882610 AGTCACTTGTTGAAATCTGCATAA 57.117 33.333 0.00 0.00 35.39 1.90
2060 2951 7.275888 AGTCACTTGTTGAAATCTGCATAAA 57.724 32.000 0.00 0.00 35.39 1.40
2061 2952 7.141363 AGTCACTTGTTGAAATCTGCATAAAC 58.859 34.615 0.00 0.00 35.39 2.01
2062 2953 7.013655 AGTCACTTGTTGAAATCTGCATAAACT 59.986 33.333 0.00 0.00 35.39 2.66
2063 2954 7.324616 GTCACTTGTTGAAATCTGCATAAACTC 59.675 37.037 0.00 0.00 35.39 3.01
2064 2955 6.583806 CACTTGTTGAAATCTGCATAAACTCC 59.416 38.462 0.00 0.00 0.00 3.85
2065 2956 5.295431 TGTTGAAATCTGCATAAACTCCG 57.705 39.130 0.00 0.00 0.00 4.63
2066 2957 4.155826 TGTTGAAATCTGCATAAACTCCGG 59.844 41.667 0.00 0.00 0.00 5.14
2067 2958 3.950397 TGAAATCTGCATAAACTCCGGT 58.050 40.909 0.00 0.00 0.00 5.28
2068 2959 5.092554 TGAAATCTGCATAAACTCCGGTA 57.907 39.130 0.00 0.00 0.00 4.02
2069 2960 5.492895 TGAAATCTGCATAAACTCCGGTAA 58.507 37.500 0.00 0.00 0.00 2.85
2070 2961 5.353123 TGAAATCTGCATAAACTCCGGTAAC 59.647 40.000 0.00 0.00 0.00 2.50
2071 2962 3.255969 TCTGCATAAACTCCGGTAACC 57.744 47.619 0.00 0.00 0.00 2.85
2072 2963 2.835764 TCTGCATAAACTCCGGTAACCT 59.164 45.455 0.00 0.00 0.00 3.50
2073 2964 2.936498 CTGCATAAACTCCGGTAACCTG 59.064 50.000 0.00 0.00 0.00 4.00
2074 2965 1.669265 GCATAAACTCCGGTAACCTGC 59.331 52.381 0.00 1.47 0.00 4.85
2075 2966 2.679930 GCATAAACTCCGGTAACCTGCT 60.680 50.000 0.00 0.00 0.00 4.24
2076 2967 2.754946 TAAACTCCGGTAACCTGCTG 57.245 50.000 0.00 0.00 0.00 4.41
2077 2968 0.605589 AAACTCCGGTAACCTGCTGC 60.606 55.000 0.00 0.00 0.00 5.25
2078 2969 1.764571 AACTCCGGTAACCTGCTGCA 61.765 55.000 0.00 0.88 0.00 4.41
2079 2970 1.221840 CTCCGGTAACCTGCTGCAT 59.778 57.895 1.31 0.00 0.00 3.96
2080 2971 1.078497 TCCGGTAACCTGCTGCATG 60.078 57.895 1.31 2.43 0.00 4.06
2081 2972 2.764314 CCGGTAACCTGCTGCATGC 61.764 63.158 11.82 11.82 43.25 4.06
2175 3066 0.109597 CAGGCGGCTTCACAATGAAC 60.110 55.000 9.66 0.00 32.21 3.18
2181 3072 2.070262 GCTTCACAATGAACAAGCCC 57.930 50.000 0.00 0.00 36.11 5.19
2185 3076 1.133199 TCACAATGAACAAGCCCCCTT 60.133 47.619 0.00 0.00 0.00 3.95
2219 3110 2.046892 CTGAACGGGGTGCTGAGG 60.047 66.667 0.00 0.00 0.00 3.86
2227 3118 2.202987 GGTGCTGAGGATGGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
2246 3137 0.389948 GCCACAGGTTCGACGAGAAT 60.390 55.000 0.00 0.00 41.49 2.40
2474 3365 2.484203 CTCGTCTTCGACCCGTCC 59.516 66.667 0.00 0.00 41.35 4.79
2486 3377 2.786495 CCCGTCCAGCGAGCACTAT 61.786 63.158 0.00 0.00 44.77 2.12
2498 3389 0.179134 AGCACTATCTCAACGCCGTC 60.179 55.000 0.00 0.00 0.00 4.79
2660 3551 4.202398 ACCATCATTGCTGTCCTCGAATAT 60.202 41.667 0.00 0.00 0.00 1.28
2668 3559 0.946221 GTCCTCGAATATGCCCAGCG 60.946 60.000 0.00 0.00 0.00 5.18
2686 3577 3.085533 AGCGCTAGATACTAGTCCATGG 58.914 50.000 8.99 4.97 0.00 3.66
2722 3613 4.929479 TGCTTGTTGTAATGGGGAGTATT 58.071 39.130 0.00 0.00 0.00 1.89
2725 3616 6.069905 TGCTTGTTGTAATGGGGAGTATTCTA 60.070 38.462 0.00 0.00 0.00 2.10
2753 3682 9.998752 ACTATAATGCATAGTATTACTCCCTCT 57.001 33.333 0.00 0.00 46.60 3.69
2755 3684 8.671987 ATAATGCATAGTATTACTCCCTCTGT 57.328 34.615 0.00 0.00 0.00 3.41
2756 3685 7.380423 AATGCATAGTATTACTCCCTCTGTT 57.620 36.000 0.00 0.00 0.00 3.16
2757 3686 6.808321 TGCATAGTATTACTCCCTCTGTTT 57.192 37.500 0.00 0.00 0.00 2.83
2758 3687 6.817184 TGCATAGTATTACTCCCTCTGTTTC 58.183 40.000 0.00 0.00 0.00 2.78
2759 3688 6.611642 TGCATAGTATTACTCCCTCTGTTTCT 59.388 38.462 0.00 0.00 0.00 2.52
2760 3689 7.783119 TGCATAGTATTACTCCCTCTGTTTCTA 59.217 37.037 0.00 0.00 0.00 2.10
2761 3690 8.639761 GCATAGTATTACTCCCTCTGTTTCTAA 58.360 37.037 0.00 0.00 0.00 2.10
2770 3699 8.794335 ACTCCCTCTGTTTCTAAATATTTGTC 57.206 34.615 11.05 0.00 0.00 3.18
2771 3700 8.606830 ACTCCCTCTGTTTCTAAATATTTGTCT 58.393 33.333 11.05 0.00 0.00 3.41
2772 3701 9.454859 CTCCCTCTGTTTCTAAATATTTGTCTT 57.545 33.333 11.05 0.00 0.00 3.01
2773 3702 9.807921 TCCCTCTGTTTCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
2848 3777 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2849 3778 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2850 3779 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2851 3780 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2852 3781 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2853 3782 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2854 3783 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2855 3784 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2856 3785 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2857 3786 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2858 3787 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2859 3788 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2860 3789 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2861 3790 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2862 3791 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2863 3792 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2864 3793 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2865 3794 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2866 3795 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2867 3796 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2868 3797 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2869 3798 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2870 3799 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2871 3800 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2872 3801 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
2873 3802 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
2874 3803 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
2875 3804 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
2876 3805 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
2877 3806 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
2878 3807 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
2879 3808 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
2880 3809 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
2881 3810 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
2882 3811 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
2883 3812 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
2884 3813 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
2885 3814 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
2886 3815 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
2887 3816 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
2888 3817 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
2889 3818 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
2890 3819 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
2891 3820 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2892 3821 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2894 3823 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
2895 3824 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
2896 3825 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
2897 3826 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2898 3827 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
2899 3828 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
2900 3829 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2901 3830 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2902 3831 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2903 3832 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2904 3833 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2905 3834 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2964 3893 5.639082 TCATGCATGACACAAAGTAGTACAG 59.361 40.000 25.42 0.00 0.00 2.74
3033 3962 6.951062 TTCCTCATTTAATTGTGTGTCACA 57.049 33.333 0.18 0.18 43.02 3.58
3038 3967 8.030692 CCTCATTTAATTGTGTGTCACATCATT 58.969 33.333 9.31 12.29 44.16 2.57
3067 3996 5.914085 GTCTAGTTGACATGCATGATACC 57.086 43.478 32.75 17.46 44.73 2.73
3068 3997 4.445718 GTCTAGTTGACATGCATGATACCG 59.554 45.833 32.75 17.85 44.73 4.02
3069 3998 3.266510 AGTTGACATGCATGATACCGT 57.733 42.857 32.75 9.47 0.00 4.83
3070 3999 3.609853 AGTTGACATGCATGATACCGTT 58.390 40.909 32.75 8.66 0.00 4.44
3071 4000 4.009675 AGTTGACATGCATGATACCGTTT 58.990 39.130 32.75 7.85 0.00 3.60
3072 4001 5.182487 AGTTGACATGCATGATACCGTTTA 58.818 37.500 32.75 2.53 0.00 2.01
3073 4002 5.822519 AGTTGACATGCATGATACCGTTTAT 59.177 36.000 32.75 6.24 0.00 1.40
3074 4003 5.671742 TGACATGCATGATACCGTTTATG 57.328 39.130 32.75 3.42 0.00 1.90
3075 4004 5.363939 TGACATGCATGATACCGTTTATGA 58.636 37.500 32.75 0.00 0.00 2.15
3076 4005 5.997129 TGACATGCATGATACCGTTTATGAT 59.003 36.000 32.75 4.97 0.00 2.45
3077 4006 7.158021 TGACATGCATGATACCGTTTATGATA 58.842 34.615 32.75 2.03 0.00 2.15
3078 4007 7.117667 TGACATGCATGATACCGTTTATGATAC 59.882 37.037 32.75 1.74 0.00 2.24
3079 4008 7.161404 ACATGCATGATACCGTTTATGATACT 58.839 34.615 32.75 0.57 0.00 2.12
3080 4009 8.311109 ACATGCATGATACCGTTTATGATACTA 58.689 33.333 32.75 0.00 0.00 1.82
3081 4010 8.595533 CATGCATGATACCGTTTATGATACTAC 58.404 37.037 22.59 0.00 0.00 2.73
3082 4011 7.094631 TGCATGATACCGTTTATGATACTACC 58.905 38.462 0.00 0.00 0.00 3.18
3083 4012 7.094631 GCATGATACCGTTTATGATACTACCA 58.905 38.462 0.00 0.00 0.00 3.25
3084 4013 7.764443 GCATGATACCGTTTATGATACTACCAT 59.236 37.037 0.00 0.00 0.00 3.55
3085 4014 9.653287 CATGATACCGTTTATGATACTACCATT 57.347 33.333 0.00 0.00 0.00 3.16
3088 4017 9.282247 GATACCGTTTATGATACTACCATTACG 57.718 37.037 0.00 0.00 34.07 3.18
3089 4018 7.275888 ACCGTTTATGATACTACCATTACGA 57.724 36.000 0.00 0.00 35.14 3.43
3090 4019 7.141363 ACCGTTTATGATACTACCATTACGAC 58.859 38.462 0.00 0.00 35.14 4.34
3091 4020 6.583806 CCGTTTATGATACTACCATTACGACC 59.416 42.308 0.00 0.00 35.14 4.79
3092 4021 6.303970 CGTTTATGATACTACCATTACGACCG 59.696 42.308 0.00 0.00 35.14 4.79
3106 4035 0.384669 CGACCGGTATGAAGTCTCCC 59.615 60.000 7.34 0.00 0.00 4.30
3108 4037 1.829222 GACCGGTATGAAGTCTCCCAA 59.171 52.381 7.34 0.00 0.00 4.12
3208 4137 5.692115 TCAGCACTAAATTATGGTCCTCA 57.308 39.130 0.00 0.00 0.00 3.86
3229 4158 4.060900 CAGATGATATGCTGGTACACCAC 58.939 47.826 0.00 0.00 42.01 4.16
3230 4159 3.969976 AGATGATATGCTGGTACACCACT 59.030 43.478 0.00 0.00 42.01 4.00
3239 4168 3.067106 CTGGTACACCACTGTGATGTTC 58.933 50.000 13.95 8.30 45.76 3.18
3240 4169 2.436173 TGGTACACCACTGTGATGTTCA 59.564 45.455 13.95 9.71 45.76 3.18
3326 4255 2.601763 GGTGAACGACGTCCATCAATAC 59.398 50.000 16.78 8.88 0.00 1.89
3370 4299 2.603110 TCTAGTACGTACACTAACCGCG 59.397 50.000 26.55 0.00 30.77 6.46
3388 4317 1.382522 CGAGCATGGGCATTGTAGTT 58.617 50.000 0.00 0.00 44.61 2.24
3424 4353 2.817258 CAAATCCAACGGAAGCTAACCA 59.183 45.455 9.92 0.00 34.34 3.67
3522 4451 4.504858 CCATAACTTACCTATCCCATCGC 58.495 47.826 0.00 0.00 0.00 4.58
3654 4583 1.378514 CCACCCATGTCCCTTTCCG 60.379 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 347 6.406849 GCTCTGAAAGACTCATCATAGACCTT 60.407 42.308 7.42 0.00 38.67 3.50
399 400 5.622770 ACGTATCTTCAAAATGACAACCC 57.377 39.130 0.00 0.00 0.00 4.11
1003 1893 1.219393 GCTCAGTTCCCTTCTCCGG 59.781 63.158 0.00 0.00 0.00 5.14
1011 1901 1.739562 CTGTGCGAGCTCAGTTCCC 60.740 63.158 15.40 0.00 34.13 3.97
1350 2241 0.247736 ATGTCTTCCGTGGCAGAGTC 59.752 55.000 0.00 0.00 0.00 3.36
1455 2346 2.969238 CATGGACGCGATGGCCTC 60.969 66.667 15.93 0.00 35.02 4.70
1502 2393 2.961721 CATCCCATGGCGACGTCG 60.962 66.667 32.57 32.57 43.27 5.12
1581 2472 2.892425 GCCATTGGAGACGCCGAG 60.892 66.667 6.95 0.00 40.66 4.63
1784 2675 2.435372 TATTGCTGATGGTTCCCCAC 57.565 50.000 0.00 0.00 45.65 4.61
1877 2768 1.144913 AGGTTGCTTGGCTTGAGGTAA 59.855 47.619 0.00 0.00 0.00 2.85
1958 2849 9.391006 TCTGTATGTGGTAGTCCATTTAAAATC 57.609 33.333 0.00 0.00 46.20 2.17
2026 2917 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2028 2919 7.328493 CAGATTTCAACAAGTGACTACATACGA 59.672 37.037 0.00 0.00 35.39 3.43
2029 2920 7.448228 CAGATTTCAACAAGTGACTACATACG 58.552 38.462 0.00 0.00 35.39 3.06
2054 2945 1.669265 GCAGGTTACCGGAGTTTATGC 59.331 52.381 9.46 7.54 0.00 3.14
2055 2946 2.936498 CAGCAGGTTACCGGAGTTTATG 59.064 50.000 9.46 0.15 0.00 1.90
2056 2947 2.679930 GCAGCAGGTTACCGGAGTTTAT 60.680 50.000 9.46 0.00 0.00 1.40
2057 2948 1.338389 GCAGCAGGTTACCGGAGTTTA 60.338 52.381 9.46 0.00 0.00 2.01
2058 2949 0.605589 GCAGCAGGTTACCGGAGTTT 60.606 55.000 9.46 0.00 0.00 2.66
2059 2950 1.003718 GCAGCAGGTTACCGGAGTT 60.004 57.895 9.46 0.00 0.00 3.01
2060 2951 1.553690 ATGCAGCAGGTTACCGGAGT 61.554 55.000 9.46 0.00 0.00 3.85
2061 2952 1.091771 CATGCAGCAGGTTACCGGAG 61.092 60.000 9.46 0.00 0.00 4.63
2062 2953 1.078497 CATGCAGCAGGTTACCGGA 60.078 57.895 9.46 0.00 0.00 5.14
2063 2954 2.764314 GCATGCAGCAGGTTACCGG 61.764 63.158 14.21 0.00 44.79 5.28
2064 2955 2.793946 GCATGCAGCAGGTTACCG 59.206 61.111 14.21 0.00 44.79 4.02
2077 2968 2.123854 ATGGGCCTCTGCAGCATG 60.124 61.111 9.47 0.30 40.13 4.06
2078 2969 2.123854 CATGGGCCTCTGCAGCAT 60.124 61.111 9.47 3.15 40.13 3.79
2097 2988 2.289133 GGAATCTTCCTCCATAGTCGCC 60.289 54.545 1.57 0.00 44.11 5.54
2120 3011 0.179156 CGTAATACTCGGTGGCACGT 60.179 55.000 12.17 6.72 34.94 4.49
2123 3014 1.470285 GCTTCGTAATACTCGGTGGCA 60.470 52.381 0.00 0.00 0.00 4.92
2175 3066 2.677875 GTCCAGCAAGGGGGCTTG 60.678 66.667 0.00 0.00 42.71 4.01
2181 3072 2.738213 AAGCTCACGTCCAGCAAGGG 62.738 60.000 16.48 0.00 39.56 3.95
2185 3076 0.601046 CAGAAAGCTCACGTCCAGCA 60.601 55.000 16.48 0.00 39.56 4.41
2195 3086 1.578206 GCACCCCGTTCAGAAAGCTC 61.578 60.000 0.00 0.00 0.00 4.09
2227 3118 0.389948 ATTCTCGTCGAACCTGTGGC 60.390 55.000 0.00 0.00 33.72 5.01
2246 3137 1.855295 TGCGGAGGATGTAGTTGGTA 58.145 50.000 0.00 0.00 0.00 3.25
2275 3166 1.334239 GGATGTAGCTCTGCTCGTACG 60.334 57.143 9.53 9.53 40.44 3.67
2474 3365 1.195347 CGTTGAGATAGTGCTCGCTG 58.805 55.000 0.00 0.00 37.73 5.18
2638 3529 2.028420 TTCGAGGACAGCAATGATGG 57.972 50.000 2.82 0.00 0.00 3.51
2668 3559 4.464244 TGCATCCATGGACTAGTATCTAGC 59.536 45.833 18.99 8.77 0.00 3.42
2744 3673 9.886132 GACAAATATTTAGAAACAGAGGGAGTA 57.114 33.333 0.00 0.00 0.00 2.59
2745 3674 8.606830 AGACAAATATTTAGAAACAGAGGGAGT 58.393 33.333 0.00 0.00 0.00 3.85
2746 3675 9.454859 AAGACAAATATTTAGAAACAGAGGGAG 57.545 33.333 0.00 0.00 0.00 4.30
2747 3676 9.807921 AAAGACAAATATTTAGAAACAGAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
2826 3755 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2827 3756 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2828 3757 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2829 3758 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2830 3759 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2831 3760 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2832 3761 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2833 3762 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2834 3763 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2835 3764 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2836 3765 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2837 3766 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2838 3767 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2839 3768 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2840 3769 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2841 3770 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2842 3771 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2843 3772 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2844 3773 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2845 3774 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2846 3775 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2847 3776 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2848 3777 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
2849 3778 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
2850 3779 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
2851 3780 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
2852 3781 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
2853 3782 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
2854 3783 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
2855 3784 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
2856 3785 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
2857 3786 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
2858 3787 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
2859 3788 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
2860 3789 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
2861 3790 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
2862 3791 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
2863 3792 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
2864 3793 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
2865 3794 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2866 3795 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
2868 3797 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
2869 3798 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
2870 3799 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
2871 3800 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
2872 3801 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
2873 3802 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
2874 3803 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2875 3804 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2876 3805 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2877 3806 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2878 3807 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2879 3808 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2880 3809 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2881 3810 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2882 3811 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2883 3812 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2884 3813 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2885 3814 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2886 3815 7.232330 ACTTATACTCCCTCCGTTCCTAAATAC 59.768 40.741 0.00 0.00 0.00 1.89
2887 3816 7.300658 ACTTATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
2888 3817 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
2889 3818 5.522641 ACTTATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
2890 3819 5.134725 ACTTATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
2891 3820 4.803329 ACTTATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
2892 3821 3.684408 ACTTATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
2893 3822 4.892345 ACTAACTTATACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 0.00 3.62
2894 3823 7.757941 ATACTAACTTATACTCCCTCCGTTC 57.242 40.000 0.00 0.00 0.00 3.95
2895 3824 9.819754 AATATACTAACTTATACTCCCTCCGTT 57.180 33.333 0.00 0.00 0.00 4.44
2904 3833 9.771140 AGGCAGCCTAATATACTAACTTATACT 57.229 33.333 14.18 0.00 28.47 2.12
2924 3853 4.935702 TGCATGACAATTAATAAGGCAGC 58.064 39.130 0.00 6.77 0.00 5.25
2956 3885 9.635520 ACCGTATCATATTAAATGCTGTACTAC 57.364 33.333 0.00 0.00 0.00 2.73
2996 3925 2.907892 TGAGGAAAGAGAGGATGTGGT 58.092 47.619 0.00 0.00 0.00 4.16
3007 3936 7.284261 TGTGACACACAATTAAATGAGGAAAGA 59.716 33.333 3.56 0.00 41.69 2.52
3056 3985 7.764443 GGTAGTATCATAAACGGTATCATGCAT 59.236 37.037 0.00 0.00 0.00 3.96
3057 3986 7.094631 GGTAGTATCATAAACGGTATCATGCA 58.905 38.462 0.00 0.00 0.00 3.96
3058 3987 7.094631 TGGTAGTATCATAAACGGTATCATGC 58.905 38.462 0.00 0.00 0.00 4.06
3059 3988 9.653287 AATGGTAGTATCATAAACGGTATCATG 57.347 33.333 0.00 0.00 0.00 3.07
3062 3991 9.282247 CGTAATGGTAGTATCATAAACGGTATC 57.718 37.037 17.42 0.00 33.93 2.24
3063 3992 9.013229 TCGTAATGGTAGTATCATAAACGGTAT 57.987 33.333 21.73 0.09 36.09 2.73
3064 3993 8.289618 GTCGTAATGGTAGTATCATAAACGGTA 58.710 37.037 21.73 8.79 36.09 4.02
3065 3994 7.141363 GTCGTAATGGTAGTATCATAAACGGT 58.859 38.462 21.73 1.27 36.09 4.83
3066 3995 6.583806 GGTCGTAATGGTAGTATCATAAACGG 59.416 42.308 21.73 10.40 36.09 4.44
3067 3996 6.303970 CGGTCGTAATGGTAGTATCATAAACG 59.696 42.308 18.45 18.45 36.41 3.60
3068 3997 6.583806 CCGGTCGTAATGGTAGTATCATAAAC 59.416 42.308 0.00 0.00 0.00 2.01
3069 3998 6.265196 ACCGGTCGTAATGGTAGTATCATAAA 59.735 38.462 0.00 0.00 33.25 1.40
3070 3999 5.769662 ACCGGTCGTAATGGTAGTATCATAA 59.230 40.000 0.00 0.00 33.25 1.90
3071 4000 5.316167 ACCGGTCGTAATGGTAGTATCATA 58.684 41.667 0.00 0.00 33.25 2.15
3072 4001 4.147321 ACCGGTCGTAATGGTAGTATCAT 58.853 43.478 0.00 0.00 33.25 2.45
3073 4002 3.554934 ACCGGTCGTAATGGTAGTATCA 58.445 45.455 0.00 0.00 33.25 2.15
3074 4003 5.412594 TCATACCGGTCGTAATGGTAGTATC 59.587 44.000 12.40 0.00 41.28 2.24
3075 4004 5.316167 TCATACCGGTCGTAATGGTAGTAT 58.684 41.667 12.40 0.00 41.28 2.12
3076 4005 4.713553 TCATACCGGTCGTAATGGTAGTA 58.286 43.478 12.40 0.00 41.28 1.82
3077 4006 3.554934 TCATACCGGTCGTAATGGTAGT 58.445 45.455 12.40 0.00 41.28 2.73
3078 4007 4.037208 ACTTCATACCGGTCGTAATGGTAG 59.963 45.833 12.40 12.56 41.28 3.18
3079 4008 3.953612 ACTTCATACCGGTCGTAATGGTA 59.046 43.478 12.40 0.59 42.12 3.25
3080 4009 2.762327 ACTTCATACCGGTCGTAATGGT 59.238 45.455 12.40 0.42 39.80 3.55
3081 4010 3.067742 AGACTTCATACCGGTCGTAATGG 59.932 47.826 12.40 0.00 35.42 3.16
3082 4011 4.288531 GAGACTTCATACCGGTCGTAATG 58.711 47.826 12.40 9.95 35.42 1.90
3083 4012 3.317430 GGAGACTTCATACCGGTCGTAAT 59.683 47.826 12.40 0.00 35.42 1.89
3084 4013 2.684881 GGAGACTTCATACCGGTCGTAA 59.315 50.000 12.40 2.37 35.42 3.18
3085 4014 2.292267 GGAGACTTCATACCGGTCGTA 58.708 52.381 12.40 0.00 35.42 3.43
3086 4015 1.101331 GGAGACTTCATACCGGTCGT 58.899 55.000 12.40 0.00 35.42 4.34
3087 4016 0.384669 GGGAGACTTCATACCGGTCG 59.615 60.000 12.40 3.35 35.42 4.79
3088 4017 1.481871 TGGGAGACTTCATACCGGTC 58.518 55.000 12.40 0.00 0.00 4.79
3089 4018 1.831736 CTTGGGAGACTTCATACCGGT 59.168 52.381 13.98 13.98 0.00 5.28
3090 4019 2.108168 TCTTGGGAGACTTCATACCGG 58.892 52.381 0.00 0.00 0.00 5.28
3091 4020 3.887621 TTCTTGGGAGACTTCATACCG 57.112 47.619 0.00 0.00 0.00 4.02
3092 4021 5.163301 TGCTATTCTTGGGAGACTTCATACC 60.163 44.000 0.00 0.00 0.00 2.73
3127 4056 2.092212 TGAAATTCAGATGGAGGGAGGC 60.092 50.000 0.00 0.00 0.00 4.70
3239 4168 7.136772 CACCATTCTGCATGAACATATAAGTG 58.863 38.462 0.00 0.00 37.52 3.16
3240 4169 6.238842 GCACCATTCTGCATGAACATATAAGT 60.239 38.462 0.00 0.00 37.52 2.24
3355 4284 1.154150 GCTCGCGGTTAGTGTACGT 60.154 57.895 6.13 0.00 0.00 3.57
3367 4296 2.109538 CTACAATGCCCATGCTCGCG 62.110 60.000 0.00 0.00 38.71 5.87
3368 4297 1.097547 ACTACAATGCCCATGCTCGC 61.098 55.000 0.00 0.00 38.71 5.03
3370 4299 1.202336 GCAACTACAATGCCCATGCTC 60.202 52.381 0.00 0.00 37.85 4.26
3388 4317 0.749649 ATTTGTCTGCCGGTTTTGCA 59.250 45.000 1.90 0.00 37.17 4.08
3424 4353 5.495926 TTGTCCATGGGTGCAAATAAATT 57.504 34.783 13.02 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.