Multiple sequence alignment - TraesCS3B01G004700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G004700 chr3B 100.000 5286 0 0 946 6231 2516341 2521626 0.000000e+00 9762.0
1 TraesCS3B01G004700 chr3B 100.000 719 0 0 1 719 2515396 2516114 0.000000e+00 1328.0
2 TraesCS3B01G004700 chr3B 83.168 101 16 1 293 392 38970320 38970420 2.390000e-14 91.6
3 TraesCS3B01G004700 chr3D 90.351 3109 191 57 1767 4798 2979339 2976263 0.000000e+00 3978.0
4 TraesCS3B01G004700 chr3D 89.918 734 38 15 4830 5539 2976174 2975453 0.000000e+00 913.0
5 TraesCS3B01G004700 chr3D 86.190 840 53 29 954 1764 2980212 2979407 0.000000e+00 850.0
6 TraesCS3B01G004700 chr3D 81.924 343 45 7 57 392 2980923 2980591 2.210000e-69 274.0
7 TraesCS3B01G004700 chr3D 83.803 142 19 4 561 699 2980430 2980290 1.410000e-26 132.0
8 TraesCS3B01G004700 chrUn 89.651 1778 109 35 1767 3517 32081684 32079955 0.000000e+00 2194.0
9 TraesCS3B01G004700 chrUn 90.723 1024 51 17 3604 4588 32079959 32078941 0.000000e+00 1325.0
10 TraesCS3B01G004700 chrUn 86.737 754 66 18 4832 5578 32078726 32078000 0.000000e+00 808.0
11 TraesCS3B01G004700 chrUn 84.661 841 67 25 954 1769 32082555 32081752 0.000000e+00 782.0
12 TraesCS3B01G004700 chrUn 85.122 410 33 12 5829 6229 32077666 32077276 1.630000e-105 394.0
13 TraesCS3B01G004700 chr4A 83.333 660 64 22 1829 2466 614504635 614504000 9.060000e-158 568.0
14 TraesCS3B01G004700 chr7D 91.374 313 27 0 3070 3382 624903830 624903518 4.460000e-116 429.0
15 TraesCS3B01G004700 chr7A 78.607 201 32 7 240 431 731276787 731276985 8.480000e-24 122.0
16 TraesCS3B01G004700 chr2D 77.512 209 40 4 240 442 76854848 76854641 1.100000e-22 119.0
17 TraesCS3B01G004700 chr6D 77.027 222 34 12 307 517 461351995 461351780 1.840000e-20 111.0
18 TraesCS3B01G004700 chr6B 77.957 186 36 3 240 421 66764180 66763996 1.840000e-20 111.0
19 TraesCS3B01G004700 chr6B 85.185 108 15 1 327 433 112899350 112899457 6.600000e-20 110.0
20 TraesCS3B01G004700 chr6B 77.419 186 38 1 240 421 55006949 55007134 2.380000e-19 108.0
21 TraesCS3B01G004700 chr4D 80.000 150 27 3 294 441 418391581 418391729 2.380000e-19 108.0
22 TraesCS3B01G004700 chr5B 76.471 187 38 4 240 421 568849514 568849329 5.140000e-16 97.1
23 TraesCS3B01G004700 chr5D 81.197 117 20 2 327 441 454308821 454308705 6.650000e-15 93.5
24 TraesCS3B01G004700 chr1B 86.765 68 9 0 1675 1742 418670122 418670189 6.700000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G004700 chr3B 2515396 2521626 6230 False 5545.0 9762 100.0000 1 6231 2 chr3B.!!$F2 6230
1 TraesCS3B01G004700 chr3D 2975453 2980923 5470 True 1229.4 3978 86.4372 57 5539 5 chr3D.!!$R1 5482
2 TraesCS3B01G004700 chrUn 32077276 32082555 5279 True 1100.6 2194 87.3788 954 6229 5 chrUn.!!$R1 5275
3 TraesCS3B01G004700 chr4A 614504000 614504635 635 True 568.0 568 83.3330 1829 2466 1 chr4A.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 537 0.093705 GCTCGCACTGTGATTTCGAC 59.906 55.000 12.86 2.90 0.00 4.20 F
1049 1098 0.257616 CTCCTCCTCCTCCTCGTCTT 59.742 60.000 0.00 0.00 0.00 3.01 F
1350 1400 0.539438 TCTTGGGGATGTGTTGTGCC 60.539 55.000 0.00 0.00 0.00 5.01 F
2056 2241 0.032217 ATTTCACGGGGCCCATTGAT 60.032 50.000 26.86 8.14 0.00 2.57 F
2095 2280 0.468226 TTCGTCTGCCCTGTTCAAGT 59.532 50.000 0.00 0.00 0.00 3.16 F
2748 2940 1.089920 CAGTAGGCATTCCACAGCAC 58.910 55.000 0.00 0.00 33.74 4.40 F
2978 3170 1.207089 CGTCAGATACCCACACCATGT 59.793 52.381 0.00 0.00 0.00 3.21 F
3270 3462 1.277557 CCACTGCAGCTAACTCTCCTT 59.722 52.381 15.27 0.00 0.00 3.36 F
4821 5101 0.396139 ATCCAATGGCGCAACAGGAT 60.396 50.000 10.83 12.08 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1622 0.100503 GAAAAGGCCGTGCGCAATAT 59.899 50.000 14.00 0.00 40.31 1.28 R
2029 2214 0.168128 GCCCCGTGAAATGAAACTCG 59.832 55.000 0.00 0.00 0.00 4.18 R
3048 3240 0.320946 CCAGGCAGCCAAAACAATGG 60.321 55.000 15.80 6.73 43.70 3.16 R
4006 4228 1.067516 AGTGATATGCGGCAAAATGGC 59.932 47.619 6.82 0.00 39.85 4.40 R
4038 4260 4.533919 AGCTATCATGGTCAGTCATAGC 57.466 45.455 10.73 10.73 41.49 2.97 R
4330 4557 1.338011 GCCAAATAAGCAGCTGCCAAA 60.338 47.619 34.39 20.45 43.38 3.28 R
4798 5078 0.038435 TGTTGCGCCATTGGATGTTG 60.038 50.000 6.95 0.00 0.00 3.33 R
4868 5185 0.237235 TGTTGAACATCGAAAGGCGC 59.763 50.000 0.00 0.00 40.61 6.53 R
5726 6099 0.102844 TTGCAAAAGCAGGACACAGC 59.897 50.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.466836 GATTCGTAGATGTTGGATGCCA 58.533 45.455 0.00 0.00 35.04 4.92
22 23 3.342377 TTCGTAGATGTTGGATGCCAA 57.658 42.857 0.00 0.00 37.56 4.52
23 24 2.905075 TCGTAGATGTTGGATGCCAAG 58.095 47.619 0.00 0.00 44.82 3.61
24 25 1.331756 CGTAGATGTTGGATGCCAAGC 59.668 52.381 0.00 0.00 44.82 4.01
25 26 2.368439 GTAGATGTTGGATGCCAAGCA 58.632 47.619 0.00 2.13 44.82 3.91
26 27 1.927487 AGATGTTGGATGCCAAGCAA 58.073 45.000 0.00 0.00 44.82 3.91
27 28 2.250031 AGATGTTGGATGCCAAGCAAA 58.750 42.857 0.00 0.00 44.82 3.68
28 29 2.232941 AGATGTTGGATGCCAAGCAAAG 59.767 45.455 0.00 0.00 44.82 2.77
29 30 1.412079 TGTTGGATGCCAAGCAAAGT 58.588 45.000 0.00 0.00 44.82 2.66
30 31 1.761784 TGTTGGATGCCAAGCAAAGTT 59.238 42.857 0.00 0.00 44.82 2.66
31 32 2.170187 TGTTGGATGCCAAGCAAAGTTT 59.830 40.909 0.00 0.00 44.82 2.66
32 33 2.802247 GTTGGATGCCAAGCAAAGTTTC 59.198 45.455 0.00 0.00 44.82 2.78
33 34 2.037901 TGGATGCCAAGCAAAGTTTCA 58.962 42.857 0.00 0.00 43.62 2.69
34 35 2.036217 TGGATGCCAAGCAAAGTTTCAG 59.964 45.455 0.00 0.00 43.62 3.02
35 36 2.297033 GGATGCCAAGCAAAGTTTCAGA 59.703 45.455 0.00 0.00 43.62 3.27
36 37 3.056322 GGATGCCAAGCAAAGTTTCAGAT 60.056 43.478 0.00 0.00 43.62 2.90
37 38 4.562143 GGATGCCAAGCAAAGTTTCAGATT 60.562 41.667 0.00 0.00 43.62 2.40
38 39 5.336690 GGATGCCAAGCAAAGTTTCAGATTA 60.337 40.000 0.00 0.00 43.62 1.75
39 40 5.528043 TGCCAAGCAAAGTTTCAGATTAA 57.472 34.783 0.00 0.00 34.76 1.40
40 41 5.911752 TGCCAAGCAAAGTTTCAGATTAAA 58.088 33.333 0.00 0.00 34.76 1.52
41 42 6.344500 TGCCAAGCAAAGTTTCAGATTAAAA 58.656 32.000 0.00 0.00 34.76 1.52
42 43 6.991531 TGCCAAGCAAAGTTTCAGATTAAAAT 59.008 30.769 0.00 0.00 34.76 1.82
43 44 7.498570 TGCCAAGCAAAGTTTCAGATTAAAATT 59.501 29.630 0.00 0.00 34.76 1.82
44 45 8.011673 GCCAAGCAAAGTTTCAGATTAAAATTC 58.988 33.333 0.00 0.00 0.00 2.17
45 46 9.044150 CCAAGCAAAGTTTCAGATTAAAATTCA 57.956 29.630 0.00 0.00 0.00 2.57
48 49 9.211485 AGCAAAGTTTCAGATTAAAATTCATGG 57.789 29.630 0.00 0.00 0.00 3.66
49 50 9.206870 GCAAAGTTTCAGATTAAAATTCATGGA 57.793 29.630 0.00 0.00 0.00 3.41
52 53 8.937634 AGTTTCAGATTAAAATTCATGGATGC 57.062 30.769 0.00 0.00 0.00 3.91
53 54 7.703621 AGTTTCAGATTAAAATTCATGGATGCG 59.296 33.333 0.00 0.00 0.00 4.73
54 55 5.522456 TCAGATTAAAATTCATGGATGCGC 58.478 37.500 0.00 0.00 0.00 6.09
55 56 5.067544 TCAGATTAAAATTCATGGATGCGCA 59.932 36.000 14.96 14.96 0.00 6.09
91 92 2.370849 TGAGTAGAACCCACTCCAAACC 59.629 50.000 0.38 0.00 41.46 3.27
98 99 0.899717 CCCACTCCAAACCCCATGTG 60.900 60.000 0.00 0.00 0.00 3.21
118 119 3.125316 GTGTTTGCTGCACTATGGTAGTC 59.875 47.826 0.00 0.00 36.76 2.59
168 169 1.350071 TTGCCCCACATTCAAGCATT 58.650 45.000 0.00 0.00 32.67 3.56
194 195 7.507956 TGGGATTTCATCAATGCTATGATTTCT 59.492 33.333 2.55 0.00 37.96 2.52
199 200 9.577222 TTTCATCAATGCTATGATTTCTCCATA 57.423 29.630 2.55 0.00 37.96 2.74
227 235 7.695869 AAATAAAATGTTTTTCAACGCGGTA 57.304 28.000 12.47 0.00 35.40 4.02
230 238 3.694535 ATGTTTTTCAACGCGGTACAA 57.305 38.095 12.47 0.00 35.40 2.41
235 243 3.694535 TTTCAACGCGGTACAATTGTT 57.305 38.095 17.78 0.95 0.00 2.83
251 259 4.668576 ATTGTTGAAGCTCACATACACG 57.331 40.909 0.00 0.00 0.00 4.49
252 260 1.798223 TGTTGAAGCTCACATACACGC 59.202 47.619 0.00 0.00 0.00 5.34
255 263 3.518634 TGAAGCTCACATACACGCATA 57.481 42.857 0.00 0.00 0.00 3.14
258 266 4.982295 TGAAGCTCACATACACGCATATAC 59.018 41.667 0.00 0.00 0.00 1.47
263 271 5.508200 TCACATACACGCATATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
274 282 7.171508 CACGCATATACACTCACCTTTATGAAT 59.828 37.037 0.00 0.00 0.00 2.57
275 283 7.171508 ACGCATATACACTCACCTTTATGAATG 59.828 37.037 0.00 0.00 32.12 2.67
277 285 7.173907 GCATATACACTCACCTTTATGAATGCT 59.826 37.037 0.00 0.00 28.78 3.79
284 292 3.065786 CACCTTTATGAATGCTCGCACAT 59.934 43.478 0.00 0.00 0.00 3.21
285 293 3.696051 ACCTTTATGAATGCTCGCACATT 59.304 39.130 2.82 2.82 42.88 2.71
292 300 2.916702 ATGCTCGCACATTCTATCCA 57.083 45.000 0.00 0.00 0.00 3.41
300 308 3.305361 CGCACATTCTATCCATATGAGCG 59.695 47.826 3.65 10.60 46.67 5.03
304 312 5.410746 CACATTCTATCCATATGAGCGCTTT 59.589 40.000 13.26 5.01 0.00 3.51
307 315 5.213891 TCTATCCATATGAGCGCTTTCAA 57.786 39.130 13.26 0.00 0.00 2.69
314 322 5.107182 CCATATGAGCGCTTTCAAGATACTG 60.107 44.000 13.26 0.00 0.00 2.74
315 323 3.319137 TGAGCGCTTTCAAGATACTGT 57.681 42.857 13.26 0.00 0.00 3.55
318 326 1.202076 GCGCTTTCAAGATACTGTGCC 60.202 52.381 0.00 0.00 0.00 5.01
319 327 2.076100 CGCTTTCAAGATACTGTGCCA 58.924 47.619 0.00 0.00 0.00 4.92
320 328 2.483877 CGCTTTCAAGATACTGTGCCAA 59.516 45.455 0.00 0.00 0.00 4.52
322 330 3.253188 GCTTTCAAGATACTGTGCCAACA 59.747 43.478 0.00 0.00 34.34 3.33
351 359 7.496920 ACATCATGACATTTACGAAGTCATCAT 59.503 33.333 0.00 0.00 46.81 2.45
357 365 4.380841 TTTACGAAGTCATCATAGGCGT 57.619 40.909 0.00 0.00 43.93 5.68
388 396 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
390 398 1.897802 GGAAACGTCTCCTCCCACTAA 59.102 52.381 0.00 0.00 32.21 2.24
391 399 2.301009 GGAAACGTCTCCTCCCACTAAA 59.699 50.000 0.00 0.00 32.21 1.85
392 400 3.324117 GAAACGTCTCCTCCCACTAAAC 58.676 50.000 0.00 0.00 0.00 2.01
393 401 0.886563 ACGTCTCCTCCCACTAAACG 59.113 55.000 0.00 0.00 35.00 3.60
394 402 0.172803 CGTCTCCTCCCACTAAACGG 59.827 60.000 0.00 0.00 0.00 4.44
395 403 1.553706 GTCTCCTCCCACTAAACGGA 58.446 55.000 0.00 0.00 0.00 4.69
396 404 1.204231 GTCTCCTCCCACTAAACGGAC 59.796 57.143 0.00 0.00 0.00 4.79
397 405 1.203087 TCTCCTCCCACTAAACGGACA 60.203 52.381 0.00 0.00 0.00 4.02
398 406 1.831736 CTCCTCCCACTAAACGGACAT 59.168 52.381 0.00 0.00 0.00 3.06
399 407 1.829222 TCCTCCCACTAAACGGACATC 59.171 52.381 0.00 0.00 0.00 3.06
400 408 1.553248 CCTCCCACTAAACGGACATCA 59.447 52.381 0.00 0.00 0.00 3.07
401 409 2.618053 CTCCCACTAAACGGACATCAC 58.382 52.381 0.00 0.00 0.00 3.06
402 410 2.233922 CTCCCACTAAACGGACATCACT 59.766 50.000 0.00 0.00 0.00 3.41
403 411 2.028476 TCCCACTAAACGGACATCACTG 60.028 50.000 0.00 0.00 0.00 3.66
404 412 2.346803 CCACTAAACGGACATCACTGG 58.653 52.381 0.00 0.00 0.00 4.00
410 418 0.670546 ACGGACATCACTGGAAAGCG 60.671 55.000 0.00 0.00 0.00 4.68
412 420 1.403647 CGGACATCACTGGAAAGCGTA 60.404 52.381 0.00 0.00 0.00 4.42
420 428 7.826690 ACATCACTGGAAAGCGTAAAATAAAT 58.173 30.769 0.00 0.00 0.00 1.40
421 429 8.303876 ACATCACTGGAAAGCGTAAAATAAATT 58.696 29.630 0.00 0.00 0.00 1.82
422 430 9.139174 CATCACTGGAAAGCGTAAAATAAATTT 57.861 29.630 0.00 0.00 34.92 1.82
425 433 9.834628 CACTGGAAAGCGTAAAATAAATTTAGA 57.165 29.630 3.94 0.00 34.21 2.10
450 458 6.849085 AAATACAATCACCAATGCCAAGTA 57.151 33.333 0.00 0.00 0.00 2.24
451 459 5.835113 ATACAATCACCAATGCCAAGTAC 57.165 39.130 0.00 0.00 0.00 2.73
452 460 3.766545 ACAATCACCAATGCCAAGTACT 58.233 40.909 0.00 0.00 0.00 2.73
453 461 4.151883 ACAATCACCAATGCCAAGTACTT 58.848 39.130 1.12 1.12 0.00 2.24
454 462 4.588528 ACAATCACCAATGCCAAGTACTTT 59.411 37.500 5.07 0.00 0.00 2.66
456 464 6.437162 ACAATCACCAATGCCAAGTACTTTAT 59.563 34.615 5.07 0.00 0.00 1.40
458 466 5.565509 TCACCAATGCCAAGTACTTTATGA 58.434 37.500 5.07 0.00 0.00 2.15
460 468 5.415701 CACCAATGCCAAGTACTTTATGAGT 59.584 40.000 5.07 0.63 42.55 3.41
461 469 5.648092 ACCAATGCCAAGTACTTTATGAGTC 59.352 40.000 5.07 0.00 39.86 3.36
462 470 5.882557 CCAATGCCAAGTACTTTATGAGTCT 59.117 40.000 5.07 0.00 39.86 3.24
464 472 6.992063 ATGCCAAGTACTTTATGAGTCTTG 57.008 37.500 5.07 0.00 39.98 3.02
465 473 6.109156 TGCCAAGTACTTTATGAGTCTTGA 57.891 37.500 5.07 0.00 41.22 3.02
466 474 5.932303 TGCCAAGTACTTTATGAGTCTTGAC 59.068 40.000 5.07 0.00 41.22 3.18
467 475 5.351740 GCCAAGTACTTTATGAGTCTTGACC 59.648 44.000 5.07 9.02 41.22 4.02
468 476 6.702329 CCAAGTACTTTATGAGTCTTGACCT 58.298 40.000 5.07 0.00 41.22 3.85
469 477 7.162082 CCAAGTACTTTATGAGTCTTGACCTT 58.838 38.462 5.07 0.00 41.22 3.50
470 478 7.118390 CCAAGTACTTTATGAGTCTTGACCTTG 59.882 40.741 5.07 0.00 41.22 3.61
471 479 7.540474 AGTACTTTATGAGTCTTGACCTTGA 57.460 36.000 0.00 0.00 39.86 3.02
472 480 8.140112 AGTACTTTATGAGTCTTGACCTTGAT 57.860 34.615 0.00 0.00 39.86 2.57
473 481 8.037758 AGTACTTTATGAGTCTTGACCTTGATG 58.962 37.037 0.00 0.00 39.86 3.07
474 482 6.176183 ACTTTATGAGTCTTGACCTTGATGG 58.824 40.000 0.00 0.00 36.31 3.51
475 483 2.479566 TGAGTCTTGACCTTGATGGC 57.520 50.000 0.00 0.00 40.22 4.40
476 484 1.980765 TGAGTCTTGACCTTGATGGCT 59.019 47.619 0.00 0.00 40.22 4.75
477 485 2.027745 TGAGTCTTGACCTTGATGGCTC 60.028 50.000 0.00 0.00 40.22 4.70
478 486 1.280421 AGTCTTGACCTTGATGGCTCC 59.720 52.381 0.00 0.00 40.22 4.70
479 487 1.003580 GTCTTGACCTTGATGGCTCCA 59.996 52.381 0.00 0.00 40.22 3.86
480 488 1.918262 TCTTGACCTTGATGGCTCCAT 59.082 47.619 0.14 0.14 40.22 3.41
481 489 3.114606 TCTTGACCTTGATGGCTCCATA 58.885 45.455 0.65 0.00 40.22 2.74
482 490 3.523157 TCTTGACCTTGATGGCTCCATAA 59.477 43.478 0.65 0.00 40.22 1.90
483 491 3.565764 TGACCTTGATGGCTCCATAAG 57.434 47.619 0.65 6.34 40.22 1.73
484 492 3.114606 TGACCTTGATGGCTCCATAAGA 58.885 45.455 0.65 0.00 40.22 2.10
487 495 4.273318 ACCTTGATGGCTCCATAAGAAAC 58.727 43.478 0.65 0.00 40.22 2.78
494 502 3.589735 TGGCTCCATAAGAAACCTAACCA 59.410 43.478 0.00 0.00 0.00 3.67
505 513 1.030457 ACCTAACCATCCGAGCTACG 58.970 55.000 0.00 0.00 42.18 3.51
519 527 4.476410 TACGCTCGGCTCGCACTG 62.476 66.667 0.00 0.00 0.00 3.66
525 533 1.005037 TCGGCTCGCACTGTGATTT 60.005 52.632 12.86 0.00 0.00 2.17
527 535 1.421485 GGCTCGCACTGTGATTTCG 59.579 57.895 12.86 5.58 0.00 3.46
529 537 0.093705 GCTCGCACTGTGATTTCGAC 59.906 55.000 12.86 2.90 0.00 4.20
530 538 1.418373 CTCGCACTGTGATTTCGACA 58.582 50.000 12.86 0.00 0.00 4.35
533 541 1.726248 CGCACTGTGATTTCGACATGA 59.274 47.619 12.86 0.00 0.00 3.07
534 542 2.472886 CGCACTGTGATTTCGACATGAC 60.473 50.000 12.86 0.00 0.00 3.06
535 543 2.472886 GCACTGTGATTTCGACATGACG 60.473 50.000 12.86 11.41 0.00 4.35
536 544 1.726791 ACTGTGATTTCGACATGACGC 59.273 47.619 12.78 0.00 0.00 5.19
537 545 1.995484 CTGTGATTTCGACATGACGCT 59.005 47.619 12.78 0.10 0.00 5.07
538 546 1.726248 TGTGATTTCGACATGACGCTG 59.274 47.619 12.78 0.00 0.00 5.18
539 547 1.992667 GTGATTTCGACATGACGCTGA 59.007 47.619 12.78 1.72 0.00 4.26
542 550 3.119637 TGATTTCGACATGACGCTGACTA 60.120 43.478 12.78 0.00 0.00 2.59
543 551 3.291809 TTTCGACATGACGCTGACTAA 57.708 42.857 12.78 0.00 0.00 2.24
545 553 3.503827 TCGACATGACGCTGACTAAAT 57.496 42.857 12.78 0.00 0.00 1.40
546 554 4.625972 TCGACATGACGCTGACTAAATA 57.374 40.909 12.78 0.00 0.00 1.40
547 555 4.989044 TCGACATGACGCTGACTAAATAA 58.011 39.130 12.78 0.00 0.00 1.40
548 556 4.796830 TCGACATGACGCTGACTAAATAAC 59.203 41.667 12.78 0.00 0.00 1.89
549 557 4.316446 CGACATGACGCTGACTAAATAACG 60.316 45.833 4.36 0.00 0.00 3.18
550 558 3.306166 ACATGACGCTGACTAAATAACGC 59.694 43.478 0.00 0.00 0.00 4.84
551 559 2.264813 TGACGCTGACTAAATAACGCC 58.735 47.619 0.00 0.00 0.00 5.68
552 560 2.264813 GACGCTGACTAAATAACGCCA 58.735 47.619 0.00 0.00 0.00 5.69
554 562 3.068560 ACGCTGACTAAATAACGCCAAA 58.931 40.909 0.00 0.00 0.00 3.28
555 563 3.687698 ACGCTGACTAAATAACGCCAAAT 59.312 39.130 0.00 0.00 0.00 2.32
557 565 4.598062 GCTGACTAAATAACGCCAAATCC 58.402 43.478 0.00 0.00 0.00 3.01
559 567 5.392595 GCTGACTAAATAACGCCAAATCCAA 60.393 40.000 0.00 0.00 0.00 3.53
593 623 7.201767 CCAAACATTTTTGTAATGGAGCCAAAA 60.202 33.333 3.78 0.00 40.61 2.44
603 633 3.676291 TGGAGCCAAAATTTTACCAGC 57.324 42.857 2.44 4.90 0.00 4.85
604 634 2.301583 TGGAGCCAAAATTTTACCAGCC 59.698 45.455 2.44 3.06 0.00 4.85
608 638 2.615240 GCCAAAATTTTACCAGCCCCTG 60.615 50.000 2.44 0.00 0.00 4.45
614 644 5.420725 AATTTTACCAGCCCCTGAAATTC 57.579 39.130 0.00 0.00 32.44 2.17
615 645 2.122783 TTACCAGCCCCTGAAATTCG 57.877 50.000 0.00 0.00 32.44 3.34
616 646 0.988832 TACCAGCCCCTGAAATTCGT 59.011 50.000 0.00 0.00 32.44 3.85
617 647 0.609131 ACCAGCCCCTGAAATTCGTG 60.609 55.000 0.00 0.00 32.44 4.35
618 648 1.508088 CAGCCCCTGAAATTCGTGC 59.492 57.895 0.00 0.00 32.44 5.34
619 649 1.678970 AGCCCCTGAAATTCGTGCC 60.679 57.895 0.00 0.00 0.00 5.01
636 667 0.865639 GCCGCGGCAAATATGTGTTC 60.866 55.000 43.55 10.27 41.49 3.18
644 675 4.385447 CGGCAAATATGTGTTCCAAAACAG 59.615 41.667 0.00 0.00 45.78 3.16
1042 1091 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1043 1092 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1049 1098 0.257616 CTCCTCCTCCTCCTCGTCTT 59.742 60.000 0.00 0.00 0.00 3.01
1051 1100 1.098712 CCTCCTCCTCCTCGTCTTCG 61.099 65.000 0.00 0.00 38.55 3.79
1052 1101 1.720694 CTCCTCCTCCTCGTCTTCGC 61.721 65.000 0.00 0.00 36.96 4.70
1054 1103 3.114647 CTCCTCCTCGTCTTCGCCG 62.115 68.421 0.00 0.00 36.96 6.46
1055 1104 4.856607 CCTCCTCGTCTTCGCCGC 62.857 72.222 0.00 0.00 36.96 6.53
1140 1189 3.471806 GTCGCCTCTTCCCCTCCC 61.472 72.222 0.00 0.00 0.00 4.30
1141 1190 4.798682 TCGCCTCTTCCCCTCCCC 62.799 72.222 0.00 0.00 0.00 4.81
1142 1191 4.806339 CGCCTCTTCCCCTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
1143 1192 2.770475 GCCTCTTCCCCTCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
1145 1194 2.040359 CTCTTCCCCTCCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
1147 1196 4.845307 CTTCCCCTCCCCTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
1160 1209 2.272170 TCCCCCATCCCCTTCCTCT 61.272 63.158 0.00 0.00 0.00 3.69
1350 1400 0.539438 TCTTGGGGATGTGTTGTGCC 60.539 55.000 0.00 0.00 0.00 5.01
1428 1478 1.271379 CGCCAATGCCTACGAGGTATA 59.729 52.381 5.26 0.00 39.94 1.47
1429 1479 2.094182 CGCCAATGCCTACGAGGTATAT 60.094 50.000 5.26 0.00 39.94 0.86
1440 1490 4.317530 ACGAGGTATATCTATCTGCCCA 57.682 45.455 0.00 0.00 0.00 5.36
1441 1491 4.673968 ACGAGGTATATCTATCTGCCCAA 58.326 43.478 0.00 0.00 0.00 4.12
1442 1492 5.084519 ACGAGGTATATCTATCTGCCCAAA 58.915 41.667 0.00 0.00 0.00 3.28
1443 1493 5.721960 ACGAGGTATATCTATCTGCCCAAAT 59.278 40.000 0.00 0.00 0.00 2.32
1444 1494 6.213600 ACGAGGTATATCTATCTGCCCAAATT 59.786 38.462 0.00 0.00 0.00 1.82
1445 1495 7.399191 ACGAGGTATATCTATCTGCCCAAATTA 59.601 37.037 0.00 0.00 0.00 1.40
1446 1496 8.258007 CGAGGTATATCTATCTGCCCAAATTAA 58.742 37.037 0.00 0.00 0.00 1.40
1447 1497 9.606631 GAGGTATATCTATCTGCCCAAATTAAG 57.393 37.037 0.00 0.00 0.00 1.85
1448 1498 9.338968 AGGTATATCTATCTGCCCAAATTAAGA 57.661 33.333 0.00 0.00 0.00 2.10
1449 1499 9.606631 GGTATATCTATCTGCCCAAATTAAGAG 57.393 37.037 0.00 0.00 0.00 2.85
1450 1500 9.103861 GTATATCTATCTGCCCAAATTAAGAGC 57.896 37.037 0.00 0.00 0.00 4.09
1451 1501 5.372343 TCTATCTGCCCAAATTAAGAGCA 57.628 39.130 0.00 0.00 0.00 4.26
1452 1502 5.754782 TCTATCTGCCCAAATTAAGAGCAA 58.245 37.500 0.00 0.00 32.14 3.91
1454 1504 5.945144 ATCTGCCCAAATTAAGAGCAATT 57.055 34.783 0.00 0.00 32.14 2.32
1455 1505 5.075858 TCTGCCCAAATTAAGAGCAATTG 57.924 39.130 0.00 0.00 32.14 2.32
1456 1506 4.081531 TCTGCCCAAATTAAGAGCAATTGG 60.082 41.667 7.72 0.00 32.14 3.16
1477 1527 2.628178 GGGACCTTCTTTTGTTCCCTTG 59.372 50.000 0.00 0.00 33.39 3.61
1522 1576 6.683974 TTCTAATGGCTCAACTGCTTATTC 57.316 37.500 0.00 0.00 0.00 1.75
1539 1593 5.755861 GCTTATTCTGTACCCAAGATCTGTC 59.244 44.000 0.00 0.00 0.00 3.51
1541 1595 2.803956 TCTGTACCCAAGATCTGTCGT 58.196 47.619 0.00 0.00 0.00 4.34
1543 1597 3.576982 TCTGTACCCAAGATCTGTCGTTT 59.423 43.478 0.00 0.00 0.00 3.60
1567 1622 2.700722 TCCATGTATTAGTTGCCGCA 57.299 45.000 0.00 0.00 0.00 5.69
1649 1738 3.686726 GTGGCTACCAGAGTGAAAATGAG 59.313 47.826 0.00 0.00 32.34 2.90
1652 1741 5.189180 GGCTACCAGAGTGAAAATGAGATT 58.811 41.667 0.00 0.00 0.00 2.40
1727 1818 2.575262 GCGCTCAATCGTGCTTGC 60.575 61.111 0.00 0.00 37.43 4.01
1748 1839 2.338984 GCGTGTAGGCGGGATAGG 59.661 66.667 0.00 0.00 0.00 2.57
1751 1842 1.827394 GTGTAGGCGGGATAGGCAA 59.173 57.895 0.00 0.00 39.37 4.52
1776 1939 2.099098 GCAGTGGCAAAACAGTTACTGT 59.901 45.455 12.76 12.76 42.78 3.55
1880 2043 0.990374 AGGCTTGGAGCTCACTGAAT 59.010 50.000 17.19 0.00 41.99 2.57
1899 2062 6.042144 TGAATTTTTGCCGTGAACATTTTC 57.958 33.333 0.00 0.00 0.00 2.29
1914 2077 7.920682 GTGAACATTTTCCTTATTCAACTGTGT 59.079 33.333 0.00 0.00 31.45 3.72
1920 2083 5.825593 TCCTTATTCAACTGTGTCCTCTT 57.174 39.130 0.00 0.00 0.00 2.85
1921 2084 5.551233 TCCTTATTCAACTGTGTCCTCTTG 58.449 41.667 0.00 0.00 0.00 3.02
1961 2124 5.129980 TGAAGTCTGCAGTTCTCATATGGAT 59.870 40.000 14.67 0.00 33.56 3.41
1964 2127 6.054295 AGTCTGCAGTTCTCATATGGATTTC 58.946 40.000 14.67 0.00 0.00 2.17
1968 2150 7.012989 TCTGCAGTTCTCATATGGATTTCATTG 59.987 37.037 14.67 0.00 37.30 2.82
1971 2153 7.977853 GCAGTTCTCATATGGATTTCATTGTTT 59.022 33.333 2.13 0.00 37.30 2.83
2013 2198 7.659390 ACTGAGCTATTTCATCATTTAGGCTAC 59.341 37.037 0.00 0.00 0.00 3.58
2015 2200 6.759272 AGCTATTTCATCATTTAGGCTACGA 58.241 36.000 0.00 0.00 0.00 3.43
2016 2201 7.217200 AGCTATTTCATCATTTAGGCTACGAA 58.783 34.615 0.00 0.00 0.00 3.85
2017 2202 7.715249 AGCTATTTCATCATTTAGGCTACGAAA 59.285 33.333 0.00 0.00 0.00 3.46
2018 2203 8.342634 GCTATTTCATCATTTAGGCTACGAAAA 58.657 33.333 0.00 0.00 0.00 2.29
2046 2231 2.139917 TGACGAGTTTCATTTCACGGG 58.860 47.619 0.00 0.00 0.00 5.28
2049 2234 0.526211 GAGTTTCATTTCACGGGGCC 59.474 55.000 0.00 0.00 0.00 5.80
2056 2241 0.032217 ATTTCACGGGGCCCATTGAT 60.032 50.000 26.86 8.14 0.00 2.57
2094 2279 1.593196 TTTCGTCTGCCCTGTTCAAG 58.407 50.000 0.00 0.00 0.00 3.02
2095 2280 0.468226 TTCGTCTGCCCTGTTCAAGT 59.532 50.000 0.00 0.00 0.00 3.16
2099 2284 2.297701 GTCTGCCCTGTTCAAGTTGAA 58.702 47.619 14.35 14.35 33.32 2.69
2156 2344 5.116882 GTTTGGTTCTTGAGTGTGTCTACT 58.883 41.667 0.00 0.00 0.00 2.57
2161 2349 6.093495 TGGTTCTTGAGTGTGTCTACTTTTTG 59.907 38.462 0.00 0.00 0.00 2.44
2206 2394 7.979786 TGAAGAAACTAGGGAGAAGTATGAT 57.020 36.000 0.00 0.00 0.00 2.45
2503 2694 4.392138 GGGACTTGGAAGTTATTTCTGACG 59.608 45.833 0.00 0.00 39.88 4.35
2561 2752 2.416638 AGGGGATCTCCTGAAATCCAG 58.583 52.381 15.29 0.00 42.78 3.86
2614 2805 6.677781 ACTAAATACATGGTTCACATTCCG 57.322 37.500 0.00 0.00 37.84 4.30
2701 2893 6.184580 ACTTGTGAAGAGTAGACTGTATCG 57.815 41.667 0.00 0.00 0.00 2.92
2709 2901 4.035792 AGAGTAGACTGTATCGCATGACAC 59.964 45.833 0.00 0.00 0.00 3.67
2717 2909 5.712152 TGTATCGCATGACACAGATAGAT 57.288 39.130 0.00 0.00 26.14 1.98
2718 2910 6.817765 TGTATCGCATGACACAGATAGATA 57.182 37.500 0.00 0.00 26.14 1.98
2719 2911 6.612306 TGTATCGCATGACACAGATAGATAC 58.388 40.000 0.00 5.60 39.45 2.24
2720 2912 5.973899 ATCGCATGACACAGATAGATACT 57.026 39.130 0.00 0.00 0.00 2.12
2721 2913 5.113502 TCGCATGACACAGATAGATACTG 57.886 43.478 0.00 0.00 40.68 2.74
2748 2940 1.089920 CAGTAGGCATTCCACAGCAC 58.910 55.000 0.00 0.00 33.74 4.40
2880 3072 4.339247 AGATGGGAAAAAGACAACACACAG 59.661 41.667 0.00 0.00 0.00 3.66
2978 3170 1.207089 CGTCAGATACCCACACCATGT 59.793 52.381 0.00 0.00 0.00 3.21
2992 3184 6.042093 CCCACACCATGTCTATTCATAGTAGT 59.958 42.308 0.00 0.00 0.00 2.73
3007 3199 9.877178 ATTCATAGTAGTTCGTTTGAAAGATCT 57.123 29.630 0.00 0.00 35.46 2.75
3008 3200 8.689251 TCATAGTAGTTCGTTTGAAAGATCTG 57.311 34.615 0.00 0.00 35.46 2.90
3014 3206 5.007724 AGTTCGTTTGAAAGATCTGGACAAC 59.992 40.000 0.00 0.00 35.46 3.32
3082 3274 1.818642 CCTGGTCTGCTCTTCCTTTG 58.181 55.000 0.00 0.00 0.00 2.77
3135 3327 2.159382 CGGGTGCTATTTGTTGACCTT 58.841 47.619 0.00 0.00 0.00 3.50
3169 3361 7.313646 TCTTCTACAACACTGCTCAATACTAC 58.686 38.462 0.00 0.00 0.00 2.73
3181 3373 5.839063 TGCTCAATACTACAGGGCTTACTAT 59.161 40.000 0.00 0.00 0.00 2.12
3239 3431 5.641783 TGTTTAATAGCAATGCTCTGCAA 57.358 34.783 12.53 0.00 45.18 4.08
3270 3462 1.277557 CCACTGCAGCTAACTCTCCTT 59.722 52.381 15.27 0.00 0.00 3.36
3319 3511 6.454795 TGTGTTGATTGGCCTTCTTTTAATC 58.545 36.000 3.32 3.36 0.00 1.75
3490 3682 5.281693 TGTCGTTGAATGTCAGCATAAAG 57.718 39.130 0.00 0.00 34.39 1.85
3494 3686 7.010460 TGTCGTTGAATGTCAGCATAAAGATAG 59.990 37.037 0.00 0.00 34.39 2.08
3495 3687 7.222805 GTCGTTGAATGTCAGCATAAAGATAGA 59.777 37.037 0.00 0.00 34.39 1.98
3496 3688 7.928167 TCGTTGAATGTCAGCATAAAGATAGAT 59.072 33.333 0.00 0.00 34.39 1.98
3529 3723 8.930846 ATCTTCCCCATTTATGTGATAGAAAG 57.069 34.615 0.00 0.00 0.00 2.62
3531 3725 7.993183 TCTTCCCCATTTATGTGATAGAAAGAC 59.007 37.037 0.00 0.00 0.00 3.01
3534 3728 6.936900 CCCCATTTATGTGATAGAAAGACGAT 59.063 38.462 0.00 0.00 0.00 3.73
3677 3874 6.670695 AGGTTAAAAGCATTGGAGTTTGAT 57.329 33.333 0.00 0.00 0.00 2.57
3834 4031 6.094048 CCCAGTTCCATCTGTAGTTTACATTG 59.906 42.308 0.00 0.00 38.15 2.82
3866 4077 4.253685 GACCAGTGTATTGTGTACATGCT 58.746 43.478 0.00 0.00 0.00 3.79
3876 4087 4.502171 TGTGTACATGCTGTTGGAAATG 57.498 40.909 0.00 0.00 0.00 2.32
3907 4118 5.957771 ACCTTGATAGATTCTGTTGCCTA 57.042 39.130 0.00 0.00 0.00 3.93
3916 4127 8.910351 ATAGATTCTGTTGCCTATTTAGGTTC 57.090 34.615 5.56 0.00 45.42 3.62
3933 4147 8.617290 TTTAGGTTCATCCTTTCAGAAACTAC 57.383 34.615 0.00 0.00 45.67 2.73
3936 4150 6.881602 AGGTTCATCCTTTCAGAAACTACATC 59.118 38.462 0.00 0.00 45.67 3.06
3948 4163 8.689251 TCAGAAACTACATCGTTAGAAAGATG 57.311 34.615 14.24 14.24 46.07 2.90
4038 4260 3.504863 GCATATCACTTGTGTTGGCTTG 58.495 45.455 0.46 0.00 0.00 4.01
4053 4275 1.945394 GGCTTGCTATGACTGACCATG 59.055 52.381 0.00 0.00 0.00 3.66
4058 4280 4.263018 TGCTATGACTGACCATGATAGC 57.737 45.455 11.47 11.47 41.19 2.97
4059 4281 3.899980 TGCTATGACTGACCATGATAGCT 59.100 43.478 16.67 0.00 41.32 3.32
4199 4421 5.123979 CCTTACTTAATTGGCAAGGTCAGTC 59.876 44.000 5.96 0.00 32.73 3.51
4215 4437 4.385421 GGTCAGTCCATCTCTGGTAGACTA 60.385 50.000 0.00 0.00 43.61 2.59
4276 4498 7.719633 AGGTTTCAACTCTTTGTAAATAGCTGA 59.280 33.333 0.00 0.00 34.02 4.26
4278 4500 9.730420 GTTTCAACTCTTTGTAAATAGCTGAAA 57.270 29.630 12.99 12.99 36.10 2.69
4280 4502 9.897744 TTCAACTCTTTGTAAATAGCTGAAATG 57.102 29.630 0.00 0.00 29.79 2.32
4283 4505 6.378280 ACTCTTTGTAAATAGCTGAAATGGGG 59.622 38.462 0.00 0.00 0.00 4.96
4301 4523 4.547671 TGGGGTTGAAAATTTACTGGACA 58.452 39.130 0.00 0.00 0.00 4.02
4316 4538 5.751243 ACTGGACACATGTTGAAGTTAAC 57.249 39.130 0.00 0.00 0.00 2.01
4388 4615 4.202182 TGGAGATACCGGGTAAAGAAATCG 60.202 45.833 11.57 0.00 42.61 3.34
4447 4674 1.722034 TCCCTTAGGATGCCTGCTAG 58.278 55.000 0.00 0.00 37.19 3.42
4573 4827 5.957168 TGCCTTTTCCTTTCCAATCATCATA 59.043 36.000 0.00 0.00 0.00 2.15
4594 4848 7.907389 TCATAGCGATTTTATACCAGATTCCT 58.093 34.615 0.00 0.00 0.00 3.36
4684 4938 8.548877 ACTAATCCAAGTAAGATGTACACCAAT 58.451 33.333 0.00 0.00 0.00 3.16
4689 4944 8.038944 TCCAAGTAAGATGTACACCAATTAGTC 58.961 37.037 0.00 0.00 0.00 2.59
4696 4951 8.691661 AGATGTACACCAATTAGTCAAAAACT 57.308 30.769 0.00 0.00 42.33 2.66
4697 4952 9.787435 AGATGTACACCAATTAGTCAAAAACTA 57.213 29.630 0.00 0.00 39.55 2.24
4761 5020 6.711277 AGAAAAAGGAAAAGCTTTGAACCTT 58.289 32.000 26.02 26.02 39.05 3.50
4765 5024 5.876651 AGGAAAAGCTTTGAACCTTGATT 57.123 34.783 13.54 0.00 0.00 2.57
4769 5028 7.233348 AGGAAAAGCTTTGAACCTTGATTCATA 59.767 33.333 13.54 0.00 38.37 2.15
4798 5078 8.392372 AGAAAGACAAGGTAATTTAGAACCAC 57.608 34.615 0.00 0.00 38.30 4.16
4799 5079 7.996644 AGAAAGACAAGGTAATTTAGAACCACA 59.003 33.333 0.00 0.00 38.30 4.17
4803 5083 7.724061 AGACAAGGTAATTTAGAACCACAACAT 59.276 33.333 0.00 0.00 38.30 2.71
4812 5092 0.602562 AACCACAACATCCAATGGCG 59.397 50.000 0.00 0.00 35.49 5.69
4821 5101 0.396139 ATCCAATGGCGCAACAGGAT 60.396 50.000 10.83 12.08 0.00 3.24
4828 5108 0.676782 GGCGCAACAGGATAAGGTGT 60.677 55.000 10.83 0.00 0.00 4.16
4838 5155 5.126067 ACAGGATAAGGTGTCATGTAATGC 58.874 41.667 0.00 0.00 46.21 3.56
4841 5158 2.113860 AAGGTGTCATGTAATGCGCT 57.886 45.000 9.73 0.00 46.21 5.92
4845 5162 2.095263 GGTGTCATGTAATGCGCTTGTT 60.095 45.455 9.73 3.59 46.21 2.83
4866 5183 6.042777 TGTTAGACATGTATAAGAGCTGTGC 58.957 40.000 13.06 0.48 0.00 4.57
4868 5185 4.691175 AGACATGTATAAGAGCTGTGCTG 58.309 43.478 0.00 0.00 39.88 4.41
4869 5186 3.201290 ACATGTATAAGAGCTGTGCTGC 58.799 45.455 0.00 0.00 39.88 5.25
4870 5187 1.926561 TGTATAAGAGCTGTGCTGCG 58.073 50.000 0.00 0.00 39.88 5.18
4871 5188 0.579156 GTATAAGAGCTGTGCTGCGC 59.421 55.000 6.19 6.19 39.88 6.09
4872 5189 0.530650 TATAAGAGCTGTGCTGCGCC 60.531 55.000 11.12 0.00 39.88 6.53
4873 5190 2.249413 ATAAGAGCTGTGCTGCGCCT 62.249 55.000 11.12 0.85 39.88 5.52
4891 5213 2.661979 GCCTTTCGATGTTCAACACGAC 60.662 50.000 12.75 0.00 33.73 4.34
4893 5215 2.226602 TTCGATGTTCAACACGACCA 57.773 45.000 12.75 0.55 33.73 4.02
4909 5231 2.679059 CGACCACAGATGCTTGAAGGAT 60.679 50.000 0.00 0.00 0.00 3.24
4974 5296 7.026631 TGTATCAGTAAAGTATTGCCAATGC 57.973 36.000 0.00 0.00 38.26 3.56
5004 5345 3.687698 GGTTGAACCATACAGTAATGCGT 59.312 43.478 9.98 0.00 38.42 5.24
5072 5414 0.605589 AGCAAGTGCCCCGTTAACTC 60.606 55.000 3.71 0.00 43.38 3.01
5091 5433 3.197766 ACTCCGAGTTGAATCCATTAGCA 59.802 43.478 0.00 0.00 0.00 3.49
5230 5572 4.537965 GATCGAAGCAGCGTAGAAGATAA 58.462 43.478 0.00 0.00 0.00 1.75
5231 5573 3.953766 TCGAAGCAGCGTAGAAGATAAG 58.046 45.455 0.00 0.00 0.00 1.73
5234 5576 3.810310 AGCAGCGTAGAAGATAAGCTT 57.190 42.857 3.48 3.48 40.25 3.74
5237 5579 5.661458 AGCAGCGTAGAAGATAAGCTTTTA 58.339 37.500 3.20 0.00 36.83 1.52
5238 5580 5.751028 AGCAGCGTAGAAGATAAGCTTTTAG 59.249 40.000 3.20 0.00 36.83 1.85
5239 5581 5.050702 GCAGCGTAGAAGATAAGCTTTTAGG 60.051 44.000 3.20 0.00 36.83 2.69
5260 5602 2.611224 GCAGCCCAATTTTGACTGAAGG 60.611 50.000 13.92 0.00 35.50 3.46
5317 5659 4.024670 ACTCCAGGAGGACAACTACATAC 58.975 47.826 21.31 0.00 39.61 2.39
5428 5771 8.344939 AGATACAGGGGATTCTTTTACCATAA 57.655 34.615 0.00 0.00 0.00 1.90
5429 5772 8.440771 AGATACAGGGGATTCTTTTACCATAAG 58.559 37.037 0.00 0.00 0.00 1.73
5430 5773 5.766590 ACAGGGGATTCTTTTACCATAAGG 58.233 41.667 0.00 0.00 42.21 2.69
5431 5774 5.494706 ACAGGGGATTCTTTTACCATAAGGA 59.505 40.000 0.00 0.00 38.69 3.36
5456 5799 1.275291 ACACCGTGGAGGAGTTATGTG 59.725 52.381 3.03 0.00 41.13 3.21
5459 5802 1.405526 CCGTGGAGGAGTTATGTGGTG 60.406 57.143 0.00 0.00 45.00 4.17
5578 5921 6.615264 ATCATGTTCACTGTTGCTATGATC 57.385 37.500 0.00 0.00 30.39 2.92
5580 5923 6.877236 TCATGTTCACTGTTGCTATGATCTA 58.123 36.000 0.00 0.00 0.00 1.98
5581 5924 6.758416 TCATGTTCACTGTTGCTATGATCTAC 59.242 38.462 0.00 0.00 0.00 2.59
5582 5925 6.036577 TGTTCACTGTTGCTATGATCTACA 57.963 37.500 0.00 0.00 0.00 2.74
5583 5926 6.101997 TGTTCACTGTTGCTATGATCTACAG 58.898 40.000 0.00 0.00 41.05 2.74
5584 5927 5.921962 TCACTGTTGCTATGATCTACAGT 57.078 39.130 0.00 0.00 46.08 3.55
5585 5928 5.895928 TCACTGTTGCTATGATCTACAGTC 58.104 41.667 0.00 0.00 44.39 3.51
5587 5930 3.706698 TGTTGCTATGATCTACAGTCGC 58.293 45.455 0.00 0.00 0.00 5.19
5588 5931 3.130340 TGTTGCTATGATCTACAGTCGCA 59.870 43.478 0.00 0.00 0.00 5.10
5589 5932 3.355626 TGCTATGATCTACAGTCGCAC 57.644 47.619 0.00 0.00 0.00 5.34
5590 5933 2.952310 TGCTATGATCTACAGTCGCACT 59.048 45.455 0.00 0.00 0.00 4.40
5592 5935 3.733224 GCTATGATCTACAGTCGCACTTG 59.267 47.826 0.00 0.00 0.00 3.16
5593 5936 2.654749 TGATCTACAGTCGCACTTGG 57.345 50.000 0.00 0.00 0.00 3.61
5594 5937 1.204704 TGATCTACAGTCGCACTTGGG 59.795 52.381 0.00 0.00 0.00 4.12
5596 5939 1.741770 CTACAGTCGCACTTGGGGC 60.742 63.158 0.00 0.00 0.00 5.80
5637 6010 3.686016 GCCCTACTGATCCTGACAAAAA 58.314 45.455 0.00 0.00 0.00 1.94
5676 6049 6.594744 TGGTGCTGTAGAATGTATCATCATT 58.405 36.000 0.00 0.00 40.20 2.57
5677 6050 7.734942 TGGTGCTGTAGAATGTATCATCATTA 58.265 34.615 0.00 0.00 38.03 1.90
5678 6051 8.210265 TGGTGCTGTAGAATGTATCATCATTAA 58.790 33.333 0.00 0.00 38.03 1.40
5688 6061 8.551682 AATGTATCATCATTAACCCCATTTGT 57.448 30.769 0.00 0.00 36.44 2.83
5699 6072 8.667463 CATTAACCCCATTTGTGAATCAAAATC 58.333 33.333 0.00 0.00 46.97 2.17
5723 6096 3.495670 TTTTGTTTCACCTCCACAACG 57.504 42.857 0.00 0.00 30.12 4.10
5724 6097 2.404923 TTGTTTCACCTCCACAACGA 57.595 45.000 0.00 0.00 0.00 3.85
5726 6099 2.285083 TGTTTCACCTCCACAACGAAG 58.715 47.619 0.00 0.00 0.00 3.79
5727 6100 1.002792 GTTTCACCTCCACAACGAAGC 60.003 52.381 0.00 0.00 0.00 3.86
5728 6101 0.468226 TTCACCTCCACAACGAAGCT 59.532 50.000 0.00 0.00 0.00 3.74
5758 6137 5.203358 GCTTTTGCAAATAAATCCGGAAC 57.797 39.130 13.65 0.00 46.58 3.62
5764 6143 4.770010 TGCAAATAAATCCGGAACCTCTTT 59.230 37.500 9.01 6.74 0.00 2.52
5765 6144 5.105917 TGCAAATAAATCCGGAACCTCTTTC 60.106 40.000 9.01 0.00 0.00 2.62
5815 6207 9.171877 CTAGTTCCTTTCTCATCTTTTGCTTAT 57.828 33.333 0.00 0.00 0.00 1.73
5817 6209 7.667219 AGTTCCTTTCTCATCTTTTGCTTATCA 59.333 33.333 0.00 0.00 0.00 2.15
5821 6213 8.394121 CCTTTCTCATCTTTTGCTTATCAGTAC 58.606 37.037 0.00 0.00 0.00 2.73
5831 6260 6.459670 TTGCTTATCAGTACGGTGAATCTA 57.540 37.500 0.00 0.00 0.00 1.98
5843 6272 5.858381 ACGGTGAATCTATGTTGCTATGAT 58.142 37.500 0.00 0.00 0.00 2.45
5850 6279 6.570672 ATCTATGTTGCTATGATTTGCTGG 57.429 37.500 0.00 0.00 0.00 4.85
5851 6280 2.945447 TGTTGCTATGATTTGCTGGC 57.055 45.000 0.00 0.00 0.00 4.85
5854 6283 3.952967 TGTTGCTATGATTTGCTGGCATA 59.047 39.130 0.00 0.00 0.00 3.14
5915 6351 1.355381 TGGCAGATTCCAATGTGTCCT 59.645 47.619 0.00 0.00 33.77 3.85
5916 6352 1.747355 GGCAGATTCCAATGTGTCCTG 59.253 52.381 0.00 0.00 32.69 3.86
5925 6361 5.452078 TCCAATGTGTCCTGACAAAAATC 57.548 39.130 0.75 0.00 43.77 2.17
5936 6372 2.247358 GACAAAAATCTCCTTGGGCCA 58.753 47.619 0.00 0.00 0.00 5.36
5939 6375 3.652387 ACAAAAATCTCCTTGGGCCAAAT 59.348 39.130 21.28 7.94 0.00 2.32
6018 6456 6.178607 TGTAGAATGTATCAGCATCACCAT 57.821 37.500 0.00 0.00 0.00 3.55
6022 6460 2.212652 TGTATCAGCATCACCATTCGC 58.787 47.619 0.00 0.00 0.00 4.70
6058 6496 2.945008 TCTTGTTTCACCTGCAGAACTG 59.055 45.455 17.39 7.48 0.00 3.16
6061 6499 2.945008 TGTTTCACCTGCAGAACTGAAG 59.055 45.455 17.39 4.41 35.97 3.02
6062 6500 1.597742 TTCACCTGCAGAACTGAAGC 58.402 50.000 17.39 0.00 34.83 3.86
6063 6501 0.601046 TCACCTGCAGAACTGAAGCG 60.601 55.000 17.39 0.00 34.83 4.68
6064 6502 0.601046 CACCTGCAGAACTGAAGCGA 60.601 55.000 17.39 0.00 34.83 4.93
6065 6503 0.106708 ACCTGCAGAACTGAAGCGAA 59.893 50.000 17.39 0.00 34.83 4.70
6066 6504 0.795085 CCTGCAGAACTGAAGCGAAG 59.205 55.000 17.39 0.00 34.83 3.79
6079 6517 4.701663 CGAAGCTGGTGTCCATGT 57.298 55.556 0.00 0.00 30.82 3.21
6080 6518 2.460330 CGAAGCTGGTGTCCATGTC 58.540 57.895 0.00 0.00 30.82 3.06
6081 6519 1.021390 CGAAGCTGGTGTCCATGTCC 61.021 60.000 0.00 0.00 30.82 4.02
6082 6520 1.003355 AAGCTGGTGTCCATGTCCG 60.003 57.895 0.00 0.00 30.82 4.79
6083 6521 1.768684 AAGCTGGTGTCCATGTCCGT 61.769 55.000 0.00 0.00 30.82 4.69
6084 6522 1.302511 GCTGGTGTCCATGTCCGTT 60.303 57.895 0.00 0.00 30.82 4.44
6085 6523 0.889186 GCTGGTGTCCATGTCCGTTT 60.889 55.000 0.00 0.00 30.82 3.60
6086 6524 1.156736 CTGGTGTCCATGTCCGTTTC 58.843 55.000 0.00 0.00 30.82 2.78
6087 6525 0.250553 TGGTGTCCATGTCCGTTTCC 60.251 55.000 0.00 0.00 0.00 3.13
6088 6526 0.250553 GGTGTCCATGTCCGTTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
6089 6527 1.600023 GTGTCCATGTCCGTTTCCAA 58.400 50.000 0.00 0.00 0.00 3.53
6090 6528 1.265905 GTGTCCATGTCCGTTTCCAAC 59.734 52.381 0.00 0.00 0.00 3.77
6091 6529 1.134068 TGTCCATGTCCGTTTCCAACA 60.134 47.619 0.00 0.00 0.00 3.33
6092 6530 1.950909 GTCCATGTCCGTTTCCAACAA 59.049 47.619 0.00 0.00 0.00 2.83
6093 6531 1.950909 TCCATGTCCGTTTCCAACAAC 59.049 47.619 0.00 0.00 0.00 3.32
6094 6532 1.678627 CCATGTCCGTTTCCAACAACA 59.321 47.619 0.00 0.00 33.14 3.33
6095 6533 2.099921 CCATGTCCGTTTCCAACAACAA 59.900 45.455 0.00 0.00 32.60 2.83
6096 6534 3.429547 CCATGTCCGTTTCCAACAACAAA 60.430 43.478 0.00 0.00 32.60 2.83
6097 6535 3.936372 TGTCCGTTTCCAACAACAAAA 57.064 38.095 0.00 0.00 0.00 2.44
6098 6536 4.252971 TGTCCGTTTCCAACAACAAAAA 57.747 36.364 0.00 0.00 0.00 1.94
6121 6559 2.357637 TCGCAACCTCCTTTTGAAACAG 59.642 45.455 0.00 0.00 0.00 3.16
6126 6564 5.719173 CAACCTCCTTTTGAAACAGAACAA 58.281 37.500 0.00 0.00 0.00 2.83
6136 6574 5.730296 TGAAACAGAACAAGGGAACAAAA 57.270 34.783 0.00 0.00 0.00 2.44
6142 6580 5.221541 ACAGAACAAGGGAACAAAACACAAA 60.222 36.000 0.00 0.00 0.00 2.83
6144 6582 6.035975 CAGAACAAGGGAACAAAACACAAATC 59.964 38.462 0.00 0.00 0.00 2.17
6182 6620 5.964758 TGCAAGTTTTAGCATGGGAATAAG 58.035 37.500 0.00 0.00 35.51 1.73
6194 6632 7.977818 AGCATGGGAATAAGACTCATATGTTA 58.022 34.615 1.90 0.00 0.00 2.41
6230 6668 5.880054 CCAGATATTTGGTTGAGTTTCGT 57.120 39.130 4.06 0.00 33.38 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.466836 TGGCATCCAACATCTACGAATC 58.533 45.455 0.00 0.00 0.00 2.52
1 2 3.558931 TGGCATCCAACATCTACGAAT 57.441 42.857 0.00 0.00 0.00 3.34
2 3 3.270027 CTTGGCATCCAACATCTACGAA 58.730 45.455 0.00 0.00 38.75 3.85
5 6 2.368439 TGCTTGGCATCCAACATCTAC 58.632 47.619 0.00 0.00 38.75 2.59
6 7 2.804986 TGCTTGGCATCCAACATCTA 57.195 45.000 0.00 0.00 38.75 1.98
7 8 1.927487 TTGCTTGGCATCCAACATCT 58.073 45.000 0.00 0.00 38.75 2.90
8 9 2.028748 ACTTTGCTTGGCATCCAACATC 60.029 45.455 0.00 0.00 38.75 3.06
9 10 1.972795 ACTTTGCTTGGCATCCAACAT 59.027 42.857 0.00 0.00 38.75 2.71
10 11 1.412079 ACTTTGCTTGGCATCCAACA 58.588 45.000 0.00 0.00 38.75 3.33
11 12 2.531522 AACTTTGCTTGGCATCCAAC 57.468 45.000 0.00 0.00 38.75 3.77
13 14 2.036217 CTGAAACTTTGCTTGGCATCCA 59.964 45.455 0.00 0.00 38.76 3.41
14 15 2.297033 TCTGAAACTTTGCTTGGCATCC 59.703 45.455 0.00 0.00 38.76 3.51
15 16 3.648339 TCTGAAACTTTGCTTGGCATC 57.352 42.857 0.00 0.00 38.76 3.91
16 17 4.612264 AATCTGAAACTTTGCTTGGCAT 57.388 36.364 0.00 0.00 38.76 4.40
17 18 5.528043 TTAATCTGAAACTTTGCTTGGCA 57.472 34.783 0.00 0.00 36.47 4.92
18 19 6.843069 TTTTAATCTGAAACTTTGCTTGGC 57.157 33.333 0.00 0.00 0.00 4.52
19 20 9.044150 TGAATTTTAATCTGAAACTTTGCTTGG 57.956 29.630 0.00 0.00 0.00 3.61
22 23 9.211485 CCATGAATTTTAATCTGAAACTTTGCT 57.789 29.630 0.00 0.00 0.00 3.91
23 24 9.206870 TCCATGAATTTTAATCTGAAACTTTGC 57.793 29.630 0.00 0.00 0.00 3.68
26 27 9.374838 GCATCCATGAATTTTAATCTGAAACTT 57.625 29.630 0.00 0.00 0.00 2.66
27 28 7.703621 CGCATCCATGAATTTTAATCTGAAACT 59.296 33.333 0.00 0.00 0.00 2.66
28 29 7.515684 GCGCATCCATGAATTTTAATCTGAAAC 60.516 37.037 0.30 0.00 0.00 2.78
29 30 6.476380 GCGCATCCATGAATTTTAATCTGAAA 59.524 34.615 0.30 0.00 0.00 2.69
30 31 5.978919 GCGCATCCATGAATTTTAATCTGAA 59.021 36.000 0.30 0.00 0.00 3.02
31 32 5.067544 TGCGCATCCATGAATTTTAATCTGA 59.932 36.000 5.66 0.00 0.00 3.27
32 33 5.283294 TGCGCATCCATGAATTTTAATCTG 58.717 37.500 5.66 0.00 0.00 2.90
33 34 5.518848 TGCGCATCCATGAATTTTAATCT 57.481 34.783 5.66 0.00 0.00 2.40
34 35 6.586868 TTTGCGCATCCATGAATTTTAATC 57.413 33.333 12.75 0.00 0.00 1.75
35 36 6.981762 TTTTGCGCATCCATGAATTTTAAT 57.018 29.167 12.75 0.00 0.00 1.40
36 37 6.791887 TTTTTGCGCATCCATGAATTTTAA 57.208 29.167 12.75 0.00 0.00 1.52
62 63 5.535030 GGAGTGGGTTCTACTCAATTGTTTT 59.465 40.000 5.13 0.00 44.92 2.43
70 71 2.370849 GGTTTGGAGTGGGTTCTACTCA 59.629 50.000 12.25 0.00 44.92 3.41
78 79 1.368268 ACATGGGGTTTGGAGTGGGT 61.368 55.000 0.00 0.00 0.00 4.51
91 92 1.246649 TAGTGCAGCAAACACATGGG 58.753 50.000 0.00 0.00 40.59 4.00
98 99 3.372206 CAGACTACCATAGTGCAGCAAAC 59.628 47.826 0.00 0.00 39.59 2.93
104 105 3.101643 ACCTCAGACTACCATAGTGCA 57.898 47.619 0.00 0.00 39.59 4.57
118 119 7.361201 CCACAATACAAGTCAAACATACCTCAG 60.361 40.741 0.00 0.00 0.00 3.35
168 169 7.507956 AGAAATCATAGCATTGATGAAATCCCA 59.492 33.333 2.55 0.00 44.73 4.37
169 170 7.893658 AGAAATCATAGCATTGATGAAATCCC 58.106 34.615 2.55 0.00 44.73 3.85
206 214 5.575957 TGTACCGCGTTGAAAAACATTTTA 58.424 33.333 4.92 0.00 0.00 1.52
210 218 3.694535 TTGTACCGCGTTGAAAAACAT 57.305 38.095 4.92 0.00 0.00 2.71
211 219 3.694535 ATTGTACCGCGTTGAAAAACA 57.305 38.095 4.92 0.00 0.00 2.83
212 220 3.792421 ACAATTGTACCGCGTTGAAAAAC 59.208 39.130 9.97 0.00 0.00 2.43
218 226 2.672188 TCAACAATTGTACCGCGTTG 57.328 45.000 12.39 4.66 38.60 4.10
222 230 2.225491 TGAGCTTCAACAATTGTACCGC 59.775 45.455 12.39 11.98 0.00 5.68
224 232 4.829064 TGTGAGCTTCAACAATTGTACC 57.171 40.909 12.39 0.00 0.00 3.34
227 235 5.560760 CGTGTATGTGAGCTTCAACAATTGT 60.561 40.000 4.92 4.92 0.00 2.71
230 238 3.120199 GCGTGTATGTGAGCTTCAACAAT 60.120 43.478 2.46 0.00 0.00 2.71
235 243 2.385013 ATGCGTGTATGTGAGCTTCA 57.615 45.000 0.00 0.00 0.00 3.02
251 259 7.173907 AGCATTCATAAAGGTGAGTGTATATGC 59.826 37.037 0.00 0.00 37.92 3.14
252 260 8.613060 AGCATTCATAAAGGTGAGTGTATATG 57.387 34.615 0.00 0.00 37.92 1.78
255 263 5.755375 CGAGCATTCATAAAGGTGAGTGTAT 59.245 40.000 0.00 0.00 37.92 2.29
258 266 3.242543 GCGAGCATTCATAAAGGTGAGTG 60.243 47.826 0.00 0.00 38.45 3.51
263 271 2.710377 TGTGCGAGCATTCATAAAGGT 58.290 42.857 0.00 0.00 0.00 3.50
274 282 2.916702 ATGGATAGAATGTGCGAGCA 57.083 45.000 0.00 0.00 0.00 4.26
275 283 4.498241 TCATATGGATAGAATGTGCGAGC 58.502 43.478 2.13 0.00 0.00 5.03
277 285 4.498241 GCTCATATGGATAGAATGTGCGA 58.502 43.478 2.13 0.00 32.50 5.10
284 292 5.213891 TGAAAGCGCTCATATGGATAGAA 57.786 39.130 12.06 0.00 0.00 2.10
285 293 4.871933 TGAAAGCGCTCATATGGATAGA 57.128 40.909 12.06 0.00 0.00 1.98
291 299 5.464722 ACAGTATCTTGAAAGCGCTCATATG 59.535 40.000 12.06 1.38 0.00 1.78
292 300 5.464722 CACAGTATCTTGAAAGCGCTCATAT 59.535 40.000 12.06 5.38 0.00 1.78
300 308 3.253188 TGTTGGCACAGTATCTTGAAAGC 59.747 43.478 0.00 0.00 42.39 3.51
314 322 2.034432 TGTCATGATGTTGTGTTGGCAC 59.966 45.455 0.00 0.00 45.44 5.01
315 323 2.305009 TGTCATGATGTTGTGTTGGCA 58.695 42.857 0.00 0.00 0.00 4.92
318 326 6.369799 TCGTAAATGTCATGATGTTGTGTTG 58.630 36.000 0.00 0.00 0.00 3.33
319 327 6.552859 TCGTAAATGTCATGATGTTGTGTT 57.447 33.333 0.00 0.00 0.00 3.32
320 328 6.204688 ACTTCGTAAATGTCATGATGTTGTGT 59.795 34.615 0.00 0.00 0.00 3.72
322 330 6.426633 TGACTTCGTAAATGTCATGATGTTGT 59.573 34.615 0.00 0.00 36.03 3.32
323 331 6.830736 TGACTTCGTAAATGTCATGATGTTG 58.169 36.000 0.00 0.00 36.03 3.33
324 332 7.615582 ATGACTTCGTAAATGTCATGATGTT 57.384 32.000 0.00 0.00 45.94 2.71
348 356 2.486918 TCGATTACGAGACGCCTATGA 58.513 47.619 0.00 0.00 43.81 2.15
372 380 2.288640 CGTTTAGTGGGAGGAGACGTTT 60.289 50.000 0.00 0.00 0.00 3.60
374 382 0.886563 CGTTTAGTGGGAGGAGACGT 59.113 55.000 0.00 0.00 0.00 4.34
375 383 0.172803 CCGTTTAGTGGGAGGAGACG 59.827 60.000 0.00 0.00 0.00 4.18
386 394 4.315803 CTTTCCAGTGATGTCCGTTTAGT 58.684 43.478 0.00 0.00 0.00 2.24
388 396 3.071479 GCTTTCCAGTGATGTCCGTTTA 58.929 45.455 0.00 0.00 0.00 2.01
390 398 1.523758 GCTTTCCAGTGATGTCCGTT 58.476 50.000 0.00 0.00 0.00 4.44
391 399 0.670546 CGCTTTCCAGTGATGTCCGT 60.671 55.000 0.00 0.00 31.42 4.69
392 400 0.670546 ACGCTTTCCAGTGATGTCCG 60.671 55.000 0.00 0.00 34.31 4.79
393 401 2.380084 TACGCTTTCCAGTGATGTCC 57.620 50.000 0.00 0.00 34.31 4.02
394 402 4.742438 TTTTACGCTTTCCAGTGATGTC 57.258 40.909 0.00 0.00 34.31 3.06
395 403 6.811253 TTATTTTACGCTTTCCAGTGATGT 57.189 33.333 0.00 0.00 34.31 3.06
396 404 8.687824 AATTTATTTTACGCTTTCCAGTGATG 57.312 30.769 0.00 0.00 34.31 3.07
398 406 9.834628 CTAAATTTATTTTACGCTTTCCAGTGA 57.165 29.630 0.00 0.00 34.31 3.41
399 407 9.834628 TCTAAATTTATTTTACGCTTTCCAGTG 57.165 29.630 0.00 0.00 36.50 3.66
420 428 8.370940 TGGCATTGGTGATTGTATTTTTCTAAA 58.629 29.630 0.00 0.00 0.00 1.85
421 429 7.901029 TGGCATTGGTGATTGTATTTTTCTAA 58.099 30.769 0.00 0.00 0.00 2.10
422 430 7.473735 TGGCATTGGTGATTGTATTTTTCTA 57.526 32.000 0.00 0.00 0.00 2.10
425 433 6.532826 ACTTGGCATTGGTGATTGTATTTTT 58.467 32.000 0.00 0.00 0.00 1.94
426 434 6.112927 ACTTGGCATTGGTGATTGTATTTT 57.887 33.333 0.00 0.00 0.00 1.82
433 441 6.663093 TCATAAAGTACTTGGCATTGGTGATT 59.337 34.615 9.34 0.00 0.00 2.57
435 443 5.565509 TCATAAAGTACTTGGCATTGGTGA 58.434 37.500 9.34 2.77 0.00 4.02
437 445 5.570320 ACTCATAAAGTACTTGGCATTGGT 58.430 37.500 9.34 0.55 36.07 3.67
443 451 5.351740 GGTCAAGACTCATAAAGTACTTGGC 59.648 44.000 9.34 0.00 41.68 4.52
444 452 6.702329 AGGTCAAGACTCATAAAGTACTTGG 58.298 40.000 9.34 2.41 40.17 3.61
450 458 6.176183 CCATCAAGGTCAAGACTCATAAAGT 58.824 40.000 0.00 0.00 42.42 2.66
451 459 5.065731 GCCATCAAGGTCAAGACTCATAAAG 59.934 44.000 0.00 0.00 40.61 1.85
452 460 4.943705 GCCATCAAGGTCAAGACTCATAAA 59.056 41.667 0.00 0.00 40.61 1.40
453 461 4.225942 AGCCATCAAGGTCAAGACTCATAA 59.774 41.667 0.00 0.00 40.61 1.90
454 462 3.776969 AGCCATCAAGGTCAAGACTCATA 59.223 43.478 0.00 0.00 40.61 2.15
456 464 1.980765 AGCCATCAAGGTCAAGACTCA 59.019 47.619 0.00 0.00 40.61 3.41
458 466 1.280421 GGAGCCATCAAGGTCAAGACT 59.720 52.381 0.00 0.00 40.61 3.24
460 468 1.361204 TGGAGCCATCAAGGTCAAGA 58.639 50.000 0.00 0.00 40.61 3.02
461 469 2.431954 ATGGAGCCATCAAGGTCAAG 57.568 50.000 0.00 0.00 40.61 3.02
462 470 3.523157 TCTTATGGAGCCATCAAGGTCAA 59.477 43.478 5.06 0.00 40.61 3.18
464 472 3.845781 TCTTATGGAGCCATCAAGGTC 57.154 47.619 5.06 0.00 40.61 3.85
465 473 4.273318 GTTTCTTATGGAGCCATCAAGGT 58.727 43.478 5.06 0.00 40.61 3.50
466 474 3.633986 GGTTTCTTATGGAGCCATCAAGG 59.366 47.826 5.06 0.00 37.82 3.61
467 475 4.530875 AGGTTTCTTATGGAGCCATCAAG 58.469 43.478 5.06 8.39 37.82 3.02
468 476 4.591321 AGGTTTCTTATGGAGCCATCAA 57.409 40.909 5.06 0.00 37.82 2.57
469 477 5.437060 GTTAGGTTTCTTATGGAGCCATCA 58.563 41.667 5.06 0.00 37.82 3.07
470 478 4.822350 GGTTAGGTTTCTTATGGAGCCATC 59.178 45.833 5.06 0.00 37.82 3.51
471 479 4.229582 TGGTTAGGTTTCTTATGGAGCCAT 59.770 41.667 7.25 7.25 40.19 4.40
472 480 3.589735 TGGTTAGGTTTCTTATGGAGCCA 59.410 43.478 0.00 0.00 0.00 4.75
473 481 4.230745 TGGTTAGGTTTCTTATGGAGCC 57.769 45.455 0.00 0.00 0.00 4.70
474 482 4.822350 GGATGGTTAGGTTTCTTATGGAGC 59.178 45.833 0.00 0.00 0.00 4.70
475 483 5.057149 CGGATGGTTAGGTTTCTTATGGAG 58.943 45.833 0.00 0.00 0.00 3.86
476 484 4.717778 TCGGATGGTTAGGTTTCTTATGGA 59.282 41.667 0.00 0.00 0.00 3.41
477 485 5.031066 TCGGATGGTTAGGTTTCTTATGG 57.969 43.478 0.00 0.00 0.00 2.74
478 486 4.511826 GCTCGGATGGTTAGGTTTCTTATG 59.488 45.833 0.00 0.00 0.00 1.90
479 487 4.409247 AGCTCGGATGGTTAGGTTTCTTAT 59.591 41.667 0.00 0.00 0.00 1.73
480 488 3.773119 AGCTCGGATGGTTAGGTTTCTTA 59.227 43.478 0.00 0.00 0.00 2.10
481 489 2.572104 AGCTCGGATGGTTAGGTTTCTT 59.428 45.455 0.00 0.00 0.00 2.52
482 490 2.188817 AGCTCGGATGGTTAGGTTTCT 58.811 47.619 0.00 0.00 0.00 2.52
483 491 2.693267 AGCTCGGATGGTTAGGTTTC 57.307 50.000 0.00 0.00 0.00 2.78
484 492 2.159142 CGTAGCTCGGATGGTTAGGTTT 60.159 50.000 0.00 0.00 35.71 3.27
487 495 3.867723 CGTAGCTCGGATGGTTAGG 57.132 57.895 0.00 0.00 35.71 2.69
505 513 3.997064 ATCACAGTGCGAGCCGAGC 62.997 63.158 0.00 0.00 0.00 5.03
509 517 1.014044 TCGAAATCACAGTGCGAGCC 61.014 55.000 0.00 0.00 0.00 4.70
511 519 1.418373 TGTCGAAATCACAGTGCGAG 58.582 50.000 0.00 0.00 0.00 5.03
515 523 2.472886 GCGTCATGTCGAAATCACAGTG 60.473 50.000 16.53 0.00 0.00 3.66
517 525 1.995484 AGCGTCATGTCGAAATCACAG 59.005 47.619 16.53 0.00 0.00 3.66
519 527 1.992667 TCAGCGTCATGTCGAAATCAC 59.007 47.619 16.53 0.00 0.00 3.06
525 533 3.503827 ATTTAGTCAGCGTCATGTCGA 57.496 42.857 16.53 0.00 0.00 4.20
527 535 4.548346 GCGTTATTTAGTCAGCGTCATGTC 60.548 45.833 0.00 0.00 0.00 3.06
529 537 3.302480 GGCGTTATTTAGTCAGCGTCATG 60.302 47.826 0.00 0.00 0.00 3.07
530 538 2.864343 GGCGTTATTTAGTCAGCGTCAT 59.136 45.455 0.00 0.00 0.00 3.06
533 541 2.373540 TGGCGTTATTTAGTCAGCGT 57.626 45.000 0.00 0.00 0.00 5.07
534 542 3.733024 TTTGGCGTTATTTAGTCAGCG 57.267 42.857 0.00 0.00 0.00 5.18
535 543 4.095782 TGGATTTGGCGTTATTTAGTCAGC 59.904 41.667 0.00 0.00 0.00 4.26
536 544 5.811399 TGGATTTGGCGTTATTTAGTCAG 57.189 39.130 0.00 0.00 0.00 3.51
537 545 5.392595 GCTTGGATTTGGCGTTATTTAGTCA 60.393 40.000 0.00 0.00 0.00 3.41
538 546 5.034797 GCTTGGATTTGGCGTTATTTAGTC 58.965 41.667 0.00 0.00 0.00 2.59
539 547 4.142249 GGCTTGGATTTGGCGTTATTTAGT 60.142 41.667 0.00 0.00 0.00 2.24
542 550 2.564947 TGGCTTGGATTTGGCGTTATTT 59.435 40.909 0.00 0.00 0.00 1.40
543 551 2.175202 TGGCTTGGATTTGGCGTTATT 58.825 42.857 0.00 0.00 0.00 1.40
545 553 1.621992 TTGGCTTGGATTTGGCGTTA 58.378 45.000 0.00 0.00 0.00 3.18
546 554 0.755686 TTTGGCTTGGATTTGGCGTT 59.244 45.000 0.00 0.00 0.00 4.84
547 555 0.975887 ATTTGGCTTGGATTTGGCGT 59.024 45.000 0.00 0.00 0.00 5.68
548 556 1.643880 GATTTGGCTTGGATTTGGCG 58.356 50.000 0.00 0.00 0.00 5.69
549 557 1.278699 TGGATTTGGCTTGGATTTGGC 59.721 47.619 0.00 0.00 0.00 4.52
550 558 3.699411 TTGGATTTGGCTTGGATTTGG 57.301 42.857 0.00 0.00 0.00 3.28
551 559 4.387598 TGTTTGGATTTGGCTTGGATTTG 58.612 39.130 0.00 0.00 0.00 2.32
552 560 4.703379 TGTTTGGATTTGGCTTGGATTT 57.297 36.364 0.00 0.00 0.00 2.17
554 562 4.914177 AATGTTTGGATTTGGCTTGGAT 57.086 36.364 0.00 0.00 0.00 3.41
555 563 4.703379 AAATGTTTGGATTTGGCTTGGA 57.297 36.364 0.00 0.00 0.00 3.53
593 623 3.447229 CGAATTTCAGGGGCTGGTAAAAT 59.553 43.478 0.00 0.00 31.51 1.82
617 647 0.865639 GAACACATATTTGCCGCGGC 60.866 55.000 42.35 42.35 42.35 6.53
618 648 0.248458 GGAACACATATTTGCCGCGG 60.248 55.000 24.05 24.05 0.00 6.46
619 649 0.449786 TGGAACACATATTTGCCGCG 59.550 50.000 0.00 0.00 0.00 6.46
1025 1074 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
1066 1115 2.805546 GCAGTAGATGGCGTCGGA 59.194 61.111 0.13 0.00 0.00 4.55
1140 1189 2.778717 GGAAGGGGATGGGGGAGG 60.779 72.222 0.00 0.00 0.00 4.30
1141 1190 1.772156 GAGGAAGGGGATGGGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
1142 1191 2.272170 AGAGGAAGGGGATGGGGGA 61.272 63.158 0.00 0.00 0.00 4.81
1143 1192 2.081161 CAGAGGAAGGGGATGGGGG 61.081 68.421 0.00 0.00 0.00 5.40
1145 1194 1.284841 AAGCAGAGGAAGGGGATGGG 61.285 60.000 0.00 0.00 0.00 4.00
1147 1196 0.750911 GCAAGCAGAGGAAGGGGATG 60.751 60.000 0.00 0.00 0.00 3.51
1341 1391 4.629115 GGCTGCACGGCACAACAC 62.629 66.667 0.50 0.00 38.25 3.32
1428 1478 5.945310 TGCTCTTAATTTGGGCAGATAGAT 58.055 37.500 2.12 0.00 0.00 1.98
1429 1479 5.372343 TGCTCTTAATTTGGGCAGATAGA 57.628 39.130 2.12 0.00 0.00 1.98
1440 1490 4.687976 AGGTCCCCAATTGCTCTTAATTT 58.312 39.130 0.00 0.00 0.00 1.82
1441 1491 4.337264 AGGTCCCCAATTGCTCTTAATT 57.663 40.909 0.00 0.00 0.00 1.40
1442 1492 4.017130 AGAAGGTCCCCAATTGCTCTTAAT 60.017 41.667 0.00 0.00 0.00 1.40
1443 1493 3.333680 AGAAGGTCCCCAATTGCTCTTAA 59.666 43.478 0.00 0.00 0.00 1.85
1444 1494 2.919602 AGAAGGTCCCCAATTGCTCTTA 59.080 45.455 0.00 0.00 0.00 2.10
1445 1495 1.713078 AGAAGGTCCCCAATTGCTCTT 59.287 47.619 0.00 0.00 0.00 2.85
1446 1496 1.376649 AGAAGGTCCCCAATTGCTCT 58.623 50.000 0.00 0.00 0.00 4.09
1447 1497 2.222227 AAGAAGGTCCCCAATTGCTC 57.778 50.000 0.00 0.00 0.00 4.26
1448 1498 2.634453 CAAAAGAAGGTCCCCAATTGCT 59.366 45.455 0.00 0.00 0.00 3.91
1449 1499 2.368548 ACAAAAGAAGGTCCCCAATTGC 59.631 45.455 0.00 0.00 0.00 3.56
1450 1500 4.503123 GGAACAAAAGAAGGTCCCCAATTG 60.503 45.833 0.00 0.00 0.00 2.32
1451 1501 3.646162 GGAACAAAAGAAGGTCCCCAATT 59.354 43.478 0.00 0.00 0.00 2.32
1452 1502 3.239449 GGAACAAAAGAAGGTCCCCAAT 58.761 45.455 0.00 0.00 0.00 3.16
1454 1504 1.133294 GGGAACAAAAGAAGGTCCCCA 60.133 52.381 4.95 0.00 32.98 4.96
1455 1505 1.147191 AGGGAACAAAAGAAGGTCCCC 59.853 52.381 12.49 0.00 36.64 4.81
1456 1506 2.628178 CAAGGGAACAAAAGAAGGTCCC 59.372 50.000 8.24 8.24 36.24 4.46
1463 1513 1.956477 GAGCTGCAAGGGAACAAAAGA 59.044 47.619 1.02 0.00 0.00 2.52
1490 1544 0.106819 AGCCATTAGAAGCAGCAGGG 60.107 55.000 0.00 0.00 0.00 4.45
1496 1550 2.086869 GCAGTTGAGCCATTAGAAGCA 58.913 47.619 0.00 0.00 0.00 3.91
1497 1551 2.363683 AGCAGTTGAGCCATTAGAAGC 58.636 47.619 0.00 0.00 34.23 3.86
1498 1552 6.541641 AGAATAAGCAGTTGAGCCATTAGAAG 59.458 38.462 0.00 0.00 34.23 2.85
1522 1576 3.594603 AACGACAGATCTTGGGTACAG 57.405 47.619 0.00 0.00 0.00 2.74
1539 1593 6.472163 GGCAACTAATACATGGAATTGAAACG 59.528 38.462 0.00 0.00 0.00 3.60
1541 1595 6.559810 CGGCAACTAATACATGGAATTGAAA 58.440 36.000 0.00 0.00 0.00 2.69
1543 1597 4.036262 GCGGCAACTAATACATGGAATTGA 59.964 41.667 0.00 0.00 0.00 2.57
1567 1622 0.100503 GAAAAGGCCGTGCGCAATAT 59.899 50.000 14.00 0.00 40.31 1.28
1624 1713 1.717032 TTCACTCTGGTAGCCACTGT 58.283 50.000 0.00 0.00 0.00 3.55
1628 1717 3.582647 TCTCATTTTCACTCTGGTAGCCA 59.417 43.478 0.00 0.00 0.00 4.75
1715 1806 2.502510 GCACGGCAAGCACGATTG 60.503 61.111 9.31 0.00 34.93 2.67
1734 1825 1.899814 CTATTGCCTATCCCGCCTACA 59.100 52.381 0.00 0.00 0.00 2.74
1735 1826 1.207329 CCTATTGCCTATCCCGCCTAC 59.793 57.143 0.00 0.00 0.00 3.18
1742 1833 1.884067 GCCACTGCCTATTGCCTATCC 60.884 57.143 0.00 0.00 40.16 2.59
1748 1839 1.000731 TGTTTTGCCACTGCCTATTGC 59.999 47.619 0.00 0.00 41.77 3.56
1751 1842 2.292828 ACTGTTTTGCCACTGCCTAT 57.707 45.000 0.00 0.00 36.33 2.57
1776 1939 2.928801 TAGAGCAGCTGGTTTCACAA 57.071 45.000 21.18 0.00 0.00 3.33
1815 1978 1.171549 TAGTGTACACGACCACGCCA 61.172 55.000 19.93 0.00 43.96 5.69
1820 1983 3.057315 GCCTAAACTAGTGTACACGACCA 60.057 47.826 19.93 6.44 36.20 4.02
1880 2043 4.130286 AGGAAAATGTTCACGGCAAAAA 57.870 36.364 0.00 0.00 35.25 1.94
1899 2062 5.308825 ACAAGAGGACACAGTTGAATAAGG 58.691 41.667 0.00 0.00 0.00 2.69
1971 2153 4.098349 AGCTCAGTTTCATGCAAGACAAAA 59.902 37.500 0.00 0.00 0.00 2.44
1988 2170 7.148672 CGTAGCCTAAATGATGAAATAGCTCAG 60.149 40.741 0.00 0.00 0.00 3.35
2017 2202 9.233232 GTGAAATGAAACTCGTCATAAGTTTTT 57.767 29.630 3.07 0.00 44.72 1.94
2018 2203 7.586300 CGTGAAATGAAACTCGTCATAAGTTTT 59.414 33.333 3.07 0.00 44.72 2.43
2029 2214 0.168128 GCCCCGTGAAATGAAACTCG 59.832 55.000 0.00 0.00 0.00 4.18
2046 2231 2.036992 TCAACACAACAATCAATGGGCC 59.963 45.455 0.00 0.00 0.00 5.80
2049 2234 3.737266 GCAGTCAACACAACAATCAATGG 59.263 43.478 0.00 0.00 0.00 3.16
2056 2241 3.932545 AAACAGCAGTCAACACAACAA 57.067 38.095 0.00 0.00 0.00 2.83
2094 2279 8.413229 TGCCATATTAGGAAAATAGCTTTCAAC 58.587 33.333 0.00 0.00 44.61 3.18
2095 2280 8.413229 GTGCCATATTAGGAAAATAGCTTTCAA 58.587 33.333 0.00 0.00 44.61 2.69
2099 2284 7.231519 GGAAGTGCCATATTAGGAAAATAGCTT 59.768 37.037 0.00 0.00 36.34 3.74
2302 2493 8.354426 GCCAAATCTAACAAAAAGTAACCAGTA 58.646 33.333 0.00 0.00 0.00 2.74
2303 2494 7.069455 AGCCAAATCTAACAAAAAGTAACCAGT 59.931 33.333 0.00 0.00 0.00 4.00
2416 2607 8.243961 TCAAATTGAAAAGTATTCACAAGGGA 57.756 30.769 0.00 0.00 0.00 4.20
2417 2608 9.492973 AATCAAATTGAAAAGTATTCACAAGGG 57.507 29.630 0.00 0.00 0.00 3.95
2533 2724 6.596869 TTTCAGGAGATCCCCTATTTGATT 57.403 37.500 0.00 0.00 34.07 2.57
2606 2797 2.159476 CCAAGACTGAATGCGGAATGTG 60.159 50.000 0.00 0.00 0.00 3.21
2672 2864 6.042777 CAGTCTACTCTTCACAAGTTCACAA 58.957 40.000 0.00 0.00 0.00 3.33
2701 2893 6.976088 AGTACAGTATCTATCTGTGTCATGC 58.024 40.000 8.54 0.00 44.41 4.06
2711 2903 9.451002 TGCCTACTGATTAGTACAGTATCTATC 57.549 37.037 0.00 0.00 45.57 2.08
2713 2905 9.809395 AATGCCTACTGATTAGTACAGTATCTA 57.191 33.333 0.00 0.00 45.57 1.98
2715 2907 8.030106 GGAATGCCTACTGATTAGTACAGTATC 58.970 40.741 0.00 0.00 45.57 2.24
2716 2908 7.509318 TGGAATGCCTACTGATTAGTACAGTAT 59.491 37.037 0.00 0.00 45.57 2.12
2717 2909 6.837048 TGGAATGCCTACTGATTAGTACAGTA 59.163 38.462 0.00 0.00 45.86 2.74
2719 2911 5.986135 GTGGAATGCCTACTGATTAGTACAG 59.014 44.000 0.00 0.00 38.36 2.74
2720 2912 5.423931 TGTGGAATGCCTACTGATTAGTACA 59.576 40.000 0.00 0.00 38.36 2.90
2721 2913 5.914033 TGTGGAATGCCTACTGATTAGTAC 58.086 41.667 0.00 0.00 38.36 2.73
2880 3072 5.458779 GCTCACATGTACAACTTTTGTTTCC 59.541 40.000 0.00 0.00 42.22 3.13
2992 3184 5.123227 AGTTGTCCAGATCTTTCAAACGAA 58.877 37.500 0.00 0.00 0.00 3.85
3048 3240 0.320946 CCAGGCAGCCAAAACAATGG 60.321 55.000 15.80 6.73 43.70 3.16
3053 3245 1.662044 CAGACCAGGCAGCCAAAAC 59.338 57.895 15.80 2.26 0.00 2.43
3061 3253 1.130054 AAGGAAGAGCAGACCAGGCA 61.130 55.000 0.00 0.00 0.00 4.75
3082 3274 7.602517 ATCAGTATTTAACAGTGCTCAGTTC 57.397 36.000 0.00 0.00 0.00 3.01
3135 3327 7.217200 AGCAGTGTTGTAGAAGAACTGAAATA 58.783 34.615 15.75 0.00 40.54 1.40
3169 3361 6.594159 CCGTTTTATATCCATAGTAAGCCCTG 59.406 42.308 0.00 0.00 0.00 4.45
3213 3405 6.318396 TGCAGAGCATTGCTATTAAACATACA 59.682 34.615 11.96 0.00 44.38 2.29
3214 3406 6.728200 TGCAGAGCATTGCTATTAAACATAC 58.272 36.000 11.96 0.00 44.38 2.39
3239 3431 4.428294 AGCTGCAGTGGTATATGAATGT 57.572 40.909 16.64 0.00 0.00 2.71
3270 3462 6.377429 AGAACGAGTATCCTATCACAAACAGA 59.623 38.462 0.00 0.00 0.00 3.41
3319 3511 5.733226 TTATGTATTGGAATGCTGACACG 57.267 39.130 0.00 0.00 0.00 4.49
3464 3656 4.926860 TGCTGACATTCAACGACATAAG 57.073 40.909 0.00 0.00 0.00 1.73
3506 3700 7.041780 CGTCTTTCTATCACATAAATGGGGAAG 60.042 40.741 0.00 0.00 0.00 3.46
3510 3704 7.969536 ATCGTCTTTCTATCACATAAATGGG 57.030 36.000 0.00 0.00 0.00 4.00
3529 3723 9.716507 ATTGTTATGCTAAAACATGTAATCGTC 57.283 29.630 0.00 0.00 36.75 4.20
3571 3765 6.366332 ACTTTCAATTTGCGTTGTTGTTAACA 59.634 30.769 3.59 3.59 40.21 2.41
3584 3778 2.203401 TGCAGCACACTTTCAATTTGC 58.797 42.857 0.00 0.00 0.00 3.68
3587 3781 4.444536 ACAAATGCAGCACACTTTCAATT 58.555 34.783 0.00 0.00 0.00 2.32
3620 3817 3.378112 CAGGAGTTTGCTTCACACTTTCA 59.622 43.478 0.00 0.00 0.00 2.69
3677 3874 3.074412 GCTTGAAATTCCTCCTGTTCGA 58.926 45.455 0.00 0.00 0.00 3.71
3834 4031 5.411669 CACAATACACTGGTCCCTAAACTTC 59.588 44.000 0.00 0.00 0.00 3.01
3866 4077 3.450457 AGGTTGCTCAAACATTTCCAACA 59.550 39.130 0.15 0.00 40.86 3.33
3876 4087 6.150140 ACAGAATCTATCAAGGTTGCTCAAAC 59.850 38.462 0.00 0.00 38.12 2.93
3916 4127 6.727824 AACGATGTAGTTTCTGAAAGGATG 57.272 37.500 2.48 0.00 0.00 3.51
3933 4147 6.355397 ACAGAATGCATCTTTCTAACGATG 57.645 37.500 0.00 5.14 42.53 3.84
3936 4150 7.060600 TGTAACAGAATGCATCTTTCTAACG 57.939 36.000 0.00 0.00 42.53 3.18
3948 4163 5.629079 AAAGCCTACTTGTAACAGAATGC 57.371 39.130 0.00 0.00 36.13 3.56
4006 4228 1.067516 AGTGATATGCGGCAAAATGGC 59.932 47.619 6.82 0.00 39.85 4.40
4038 4260 4.533919 AGCTATCATGGTCAGTCATAGC 57.466 45.455 10.73 10.73 41.49 2.97
4141 4363 2.269023 TGGACACCACAGAGATTCCAT 58.731 47.619 0.00 0.00 0.00 3.41
4199 4421 6.322456 TGTTCAAGATAGTCTACCAGAGATGG 59.678 42.308 0.00 0.00 36.29 3.51
4215 4437 7.816031 CCATTTGCAATTTACTCTGTTCAAGAT 59.184 33.333 0.00 0.00 33.29 2.40
4249 4471 8.017946 CAGCTATTTACAAAGAGTTGAAACCTC 58.982 37.037 7.21 0.00 39.72 3.85
4276 4498 6.100424 TGTCCAGTAAATTTTCAACCCCATTT 59.900 34.615 0.00 0.00 0.00 2.32
4278 4500 5.011635 GTGTCCAGTAAATTTTCAACCCCAT 59.988 40.000 0.00 0.00 0.00 4.00
4279 4501 4.342665 GTGTCCAGTAAATTTTCAACCCCA 59.657 41.667 0.00 0.00 0.00 4.96
4280 4502 4.342665 TGTGTCCAGTAAATTTTCAACCCC 59.657 41.667 0.00 0.00 0.00 4.95
4283 4505 7.704472 TCAACATGTGTCCAGTAAATTTTCAAC 59.296 33.333 0.00 0.00 0.00 3.18
4301 4523 9.555727 AACAGTATACAGTTAACTTCAACATGT 57.444 29.630 11.56 5.04 0.00 3.21
4330 4557 1.338011 GCCAAATAAGCAGCTGCCAAA 60.338 47.619 34.39 20.45 43.38 3.28
4447 4674 6.923928 AATTACCAATATTTTGCCATGTGC 57.076 33.333 0.00 0.00 41.77 4.57
4498 4738 6.992715 GCTGACCAAGAAGTAATATGGTATGT 59.007 38.462 0.00 0.00 45.85 2.29
4573 4827 5.998363 GGAAGGAATCTGGTATAAAATCGCT 59.002 40.000 0.00 0.00 0.00 4.93
4655 4909 9.530633 GGTGTACATCTTACTTGGATTAGTTAG 57.469 37.037 0.00 0.00 0.00 2.34
4743 5000 5.363580 TGAATCAAGGTTCAAAGCTTTTCCT 59.636 36.000 9.53 14.21 43.61 3.36
4744 5001 5.600696 TGAATCAAGGTTCAAAGCTTTTCC 58.399 37.500 9.53 12.20 43.61 3.13
4745 5002 8.299570 TCTATGAATCAAGGTTCAAAGCTTTTC 58.700 33.333 9.53 7.93 43.61 2.29
4786 5045 6.700352 CCATTGGATGTTGTGGTTCTAAATT 58.300 36.000 0.00 0.00 0.00 1.82
4792 5072 1.402720 CGCCATTGGATGTTGTGGTTC 60.403 52.381 6.95 0.00 34.23 3.62
4798 5078 0.038435 TGTTGCGCCATTGGATGTTG 60.038 50.000 6.95 0.00 0.00 3.33
4799 5079 0.244450 CTGTTGCGCCATTGGATGTT 59.756 50.000 6.95 0.00 0.00 2.71
4803 5083 0.254462 TATCCTGTTGCGCCATTGGA 59.746 50.000 6.95 8.43 0.00 3.53
4812 5092 3.347216 ACATGACACCTTATCCTGTTGC 58.653 45.455 0.00 0.00 0.00 4.17
4821 5101 3.260475 AGCGCATTACATGACACCTTA 57.740 42.857 11.47 0.00 0.00 2.69
4828 5108 4.249661 TGTCTAACAAGCGCATTACATGA 58.750 39.130 11.47 0.00 0.00 3.07
4838 5155 5.980116 AGCTCTTATACATGTCTAACAAGCG 59.020 40.000 18.31 8.21 0.00 4.68
4841 5158 6.535150 GCACAGCTCTTATACATGTCTAACAA 59.465 38.462 0.00 0.00 0.00 2.83
4845 5162 5.737349 GCAGCACAGCTCTTATACATGTCTA 60.737 44.000 0.00 0.00 36.40 2.59
4866 5183 0.516877 TTGAACATCGAAAGGCGCAG 59.483 50.000 10.83 0.00 40.61 5.18
4868 5185 0.237235 TGTTGAACATCGAAAGGCGC 59.763 50.000 0.00 0.00 40.61 6.53
4869 5186 1.721489 CGTGTTGAACATCGAAAGGCG 60.721 52.381 0.00 0.00 42.69 5.52
4870 5187 1.529438 TCGTGTTGAACATCGAAAGGC 59.471 47.619 16.40 0.00 32.09 4.35
4871 5188 2.096417 GGTCGTGTTGAACATCGAAAGG 60.096 50.000 19.00 0.00 35.00 3.11
4872 5189 2.542178 TGGTCGTGTTGAACATCGAAAG 59.458 45.455 19.00 0.00 40.11 2.62
4873 5190 2.552031 TGGTCGTGTTGAACATCGAAA 58.448 42.857 19.00 11.26 40.11 3.46
4891 5213 4.518211 GGATAATCCTTCAAGCATCTGTGG 59.482 45.833 0.00 0.00 32.53 4.17
4893 5215 5.378230 TGGATAATCCTTCAAGCATCTGT 57.622 39.130 0.00 0.00 37.46 3.41
4925 5247 2.299297 ACAACTACACTGCCAGACTACC 59.701 50.000 0.00 0.00 0.00 3.18
4965 5287 2.585341 CCAGCAAGGGCATTGGCAA 61.585 57.895 14.30 0.68 44.61 4.52
4974 5296 4.597032 TGGTTCAACCAGCAAGGG 57.403 55.556 4.67 0.00 44.79 3.95
5004 5345 6.740110 ACAACGAAAATAACATTGGTTGCTA 58.260 32.000 12.12 0.00 44.97 3.49
5008 5349 6.565234 TGTGACAACGAAAATAACATTGGTT 58.435 32.000 0.00 0.00 41.06 3.67
5062 5404 2.443887 TTCAACTCGGAGTTAACGGG 57.556 50.000 22.03 10.43 36.03 5.28
5072 5414 3.310774 CAGTGCTAATGGATTCAACTCGG 59.689 47.826 0.00 0.00 0.00 4.63
5111 5453 4.150627 CGTAAACTCATCTGGAACACACAG 59.849 45.833 0.00 0.00 37.30 3.66
5120 5462 3.447586 TCCTCCTTCGTAAACTCATCTGG 59.552 47.826 0.00 0.00 0.00 3.86
5230 5572 1.942776 AATTGGGCTGCCTAAAAGCT 58.057 45.000 21.60 1.94 40.64 3.74
5231 5573 2.743664 CAAAATTGGGCTGCCTAAAAGC 59.256 45.455 21.60 2.31 40.06 3.51
5234 5576 3.006752 CAGTCAAAATTGGGCTGCCTAAA 59.993 43.478 21.60 14.83 0.00 1.85
5237 5579 0.971386 CAGTCAAAATTGGGCTGCCT 59.029 50.000 19.68 0.00 0.00 4.75
5238 5580 0.968405 TCAGTCAAAATTGGGCTGCC 59.032 50.000 11.05 11.05 34.25 4.85
5239 5581 2.611224 CCTTCAGTCAAAATTGGGCTGC 60.611 50.000 0.00 0.00 34.25 5.25
5260 5602 4.927425 TGTTAAACAGCCTCATCTCGTAAC 59.073 41.667 0.00 0.00 0.00 2.50
5295 5637 2.696526 TGTAGTTGTCCTCCTGGAGT 57.303 50.000 21.70 5.29 44.16 3.85
5296 5638 3.385111 GGTATGTAGTTGTCCTCCTGGAG 59.615 52.174 17.02 17.02 44.16 3.86
5297 5639 3.371965 GGTATGTAGTTGTCCTCCTGGA 58.628 50.000 0.00 0.00 40.69 3.86
5298 5640 2.434702 GGGTATGTAGTTGTCCTCCTGG 59.565 54.545 0.00 0.00 0.00 4.45
5299 5641 2.100916 CGGGTATGTAGTTGTCCTCCTG 59.899 54.545 0.00 0.00 0.00 3.86
5317 5659 1.299976 CCTTCCCTTTCCACTCGGG 59.700 63.158 0.00 0.00 39.41 5.14
5387 5730 8.432805 CCCCTGTATCTTATGTTTCTTCAGTAT 58.567 37.037 0.00 0.00 0.00 2.12
5388 5731 7.622081 TCCCCTGTATCTTATGTTTCTTCAGTA 59.378 37.037 0.00 0.00 0.00 2.74
5456 5799 7.772332 AGACGTAAGAAATGTTATCATCACC 57.228 36.000 0.00 0.00 43.62 4.02
5506 5849 5.862845 AGGAGACATGTAAATAGCATCCAG 58.137 41.667 0.00 0.00 0.00 3.86
5578 5921 1.741770 GCCCCAAGTGCGACTGTAG 60.742 63.158 0.00 0.00 0.00 2.74
5587 5930 1.937546 GAATCTTGCCGCCCCAAGTG 61.938 60.000 9.91 0.00 42.16 3.16
5588 5931 1.678970 GAATCTTGCCGCCCCAAGT 60.679 57.895 9.91 0.00 42.16 3.16
5589 5932 2.764314 CGAATCTTGCCGCCCCAAG 61.764 63.158 4.97 4.97 42.73 3.61
5590 5933 2.749839 CGAATCTTGCCGCCCCAA 60.750 61.111 0.00 0.00 0.00 4.12
5596 5939 0.248215 GGAACATGCGAATCTTGCCG 60.248 55.000 0.00 0.00 0.00 5.69
5611 5984 0.105039 CAGGATCAGTAGGGCGGAAC 59.895 60.000 0.00 0.00 0.00 3.62
5637 6010 4.590222 ACAGCACCAAAAGGAGATTCATTT 59.410 37.500 0.00 0.00 31.05 2.32
5645 6018 4.074970 ACATTCTACAGCACCAAAAGGAG 58.925 43.478 0.00 0.00 0.00 3.69
5647 6020 5.647658 TGATACATTCTACAGCACCAAAAGG 59.352 40.000 0.00 0.00 0.00 3.11
5650 6023 6.413892 TGATGATACATTCTACAGCACCAAA 58.586 36.000 0.00 0.00 0.00 3.28
5676 6049 7.016072 ACAGATTTTGATTCACAAATGGGGTTA 59.984 33.333 9.86 0.00 45.99 2.85
5677 6050 6.183361 ACAGATTTTGATTCACAAATGGGGTT 60.183 34.615 9.86 0.00 45.99 4.11
5678 6051 5.307716 ACAGATTTTGATTCACAAATGGGGT 59.692 36.000 9.86 5.02 45.99 4.95
5699 6072 4.448537 TGTGGAGGTGAAACAAAAACAG 57.551 40.909 0.00 0.00 39.98 3.16
5726 6099 0.102844 TTGCAAAAGCAGGACACAGC 59.897 50.000 0.00 0.00 0.00 4.40
5727 6100 2.582728 TTTGCAAAAGCAGGACACAG 57.417 45.000 10.02 0.00 0.00 3.66
5728 6101 4.662468 TTATTTGCAAAAGCAGGACACA 57.338 36.364 17.19 0.00 0.00 3.72
5790 6182 9.167311 GATAAGCAAAAGATGAGAAAGGAACTA 57.833 33.333 0.00 0.00 38.49 2.24
5815 6207 4.159693 AGCAACATAGATTCACCGTACTGA 59.840 41.667 0.00 0.00 0.00 3.41
5817 6209 4.737855 AGCAACATAGATTCACCGTACT 57.262 40.909 0.00 0.00 0.00 2.73
5821 6213 6.791887 AATCATAGCAACATAGATTCACCG 57.208 37.500 0.00 0.00 0.00 4.94
5831 6260 2.761767 TGCCAGCAAATCATAGCAACAT 59.238 40.909 0.00 0.00 0.00 2.71
5865 6294 4.045783 CACACCAATAACCGTTTTTCCAC 58.954 43.478 0.00 0.00 0.00 4.02
5873 6309 0.672401 CTCGCCACACCAATAACCGT 60.672 55.000 0.00 0.00 0.00 4.83
5877 6313 2.364632 CCAATCTCGCCACACCAATAA 58.635 47.619 0.00 0.00 0.00 1.40
5908 6344 4.437682 AGGAGATTTTTGTCAGGACACA 57.562 40.909 0.77 0.00 41.67 3.72
5909 6345 4.022849 CCAAGGAGATTTTTGTCAGGACAC 60.023 45.833 0.77 0.00 41.67 3.67
5912 6348 3.766545 CCCAAGGAGATTTTTGTCAGGA 58.233 45.455 0.00 0.00 0.00 3.86
5915 6351 2.247358 GGCCCAAGGAGATTTTTGTCA 58.753 47.619 0.00 0.00 0.00 3.58
5916 6352 2.247358 TGGCCCAAGGAGATTTTTGTC 58.753 47.619 0.00 0.00 0.00 3.18
5946 6382 7.978975 TGAACAAGGAGAAACAAAATTACCAAG 59.021 33.333 0.00 0.00 0.00 3.61
5951 6389 8.966868 AGTCTTGAACAAGGAGAAACAAAATTA 58.033 29.630 13.46 0.00 38.88 1.40
6014 6452 4.555262 ACAATTTTTGATTCGCGAATGGT 58.445 34.783 36.91 16.57 0.00 3.55
6018 6456 5.746245 ACAAGAACAATTTTTGATTCGCGAA 59.254 32.000 25.66 25.66 0.00 4.70
6022 6460 7.845622 GGTGAAACAAGAACAATTTTTGATTCG 59.154 33.333 8.99 0.00 39.98 3.34
6058 6496 0.674895 ATGGACACCAGCTTCGCTTC 60.675 55.000 0.00 0.00 36.40 3.86
6061 6499 1.639298 GACATGGACACCAGCTTCGC 61.639 60.000 0.00 0.00 36.75 4.70
6062 6500 1.021390 GGACATGGACACCAGCTTCG 61.021 60.000 0.00 0.00 36.75 3.79
6063 6501 1.021390 CGGACATGGACACCAGCTTC 61.021 60.000 0.00 0.00 36.75 3.86
6064 6502 1.003355 CGGACATGGACACCAGCTT 60.003 57.895 0.00 0.00 36.75 3.74
6065 6503 1.768684 AACGGACATGGACACCAGCT 61.769 55.000 0.00 0.00 36.75 4.24
6066 6504 0.889186 AAACGGACATGGACACCAGC 60.889 55.000 0.00 0.00 36.75 4.85
6067 6505 1.156736 GAAACGGACATGGACACCAG 58.843 55.000 0.00 0.00 36.75 4.00
6069 6507 0.250553 TGGAAACGGACATGGACACC 60.251 55.000 0.00 0.00 0.00 4.16
6070 6508 1.265905 GTTGGAAACGGACATGGACAC 59.734 52.381 0.00 0.00 36.92 3.67
6071 6509 1.600023 GTTGGAAACGGACATGGACA 58.400 50.000 0.00 0.00 36.92 4.02
6095 6533 4.664150 TCAAAAGGAGGTTGCGATTTTT 57.336 36.364 0.00 0.00 0.00 1.94
6096 6534 4.664150 TTCAAAAGGAGGTTGCGATTTT 57.336 36.364 0.00 0.00 0.00 1.82
6097 6535 4.142049 TGTTTCAAAAGGAGGTTGCGATTT 60.142 37.500 0.00 0.00 0.00 2.17
6098 6536 3.383185 TGTTTCAAAAGGAGGTTGCGATT 59.617 39.130 0.00 0.00 0.00 3.34
6099 6537 2.955660 TGTTTCAAAAGGAGGTTGCGAT 59.044 40.909 0.00 0.00 0.00 4.58
6100 6538 2.357637 CTGTTTCAAAAGGAGGTTGCGA 59.642 45.455 0.00 0.00 0.00 5.10
6101 6539 2.357637 TCTGTTTCAAAAGGAGGTTGCG 59.642 45.455 0.00 0.00 0.00 4.85
6108 6546 4.605183 TCCCTTGTTCTGTTTCAAAAGGA 58.395 39.130 0.86 0.00 37.02 3.36
6110 6548 5.719173 TGTTCCCTTGTTCTGTTTCAAAAG 58.281 37.500 0.00 0.00 0.00 2.27
6114 6552 5.011125 TGTTTTGTTCCCTTGTTCTGTTTCA 59.989 36.000 0.00 0.00 0.00 2.69
6121 6559 5.005299 CGATTTGTGTTTTGTTCCCTTGTTC 59.995 40.000 0.00 0.00 0.00 3.18
6126 6564 2.428890 TGCGATTTGTGTTTTGTTCCCT 59.571 40.909 0.00 0.00 0.00 4.20
6136 6574 1.135315 GATGCGCTGCGATTTGTGT 59.865 52.632 28.07 2.04 0.00 3.72
6142 6580 1.939597 CATTCTGATGCGCTGCGAT 59.060 52.632 28.07 15.93 0.00 4.58
6182 6620 8.440833 GTGTTTACAACCTGTAACATATGAGTC 58.559 37.037 10.38 0.00 41.97 3.36
6194 6632 6.208599 CCAAATATCTGGTGTTTACAACCTGT 59.791 38.462 0.00 0.00 31.06 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.