Multiple sequence alignment - TraesCS3B01G004400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G004400 chr3B 100.000 3251 0 0 1 3251 2503246 2506496 0.000000e+00 6004.0
1 TraesCS3B01G004400 chr3B 92.024 840 55 9 1 832 17366567 17367402 0.000000e+00 1170.0
2 TraesCS3B01G004400 chrUn 91.486 1480 68 20 830 2287 32131833 32130390 0.000000e+00 1982.0
3 TraesCS3B01G004400 chrUn 78.087 899 142 31 1119 1964 32127032 32126136 4.810000e-143 518.0
4 TraesCS3B01G004400 chrUn 98.246 57 1 0 3195 3251 378270653 378270597 2.060000e-17 100.0
5 TraesCS3B01G004400 chrUn 98.246 57 1 0 3195 3251 447954261 447954317 2.060000e-17 100.0
6 TraesCS3B01G004400 chrUn 100.000 30 0 0 2999 3028 43315693 43315722 4.530000e-04 56.5
7 TraesCS3B01G004400 chr7A 93.533 835 46 6 1 830 198692018 198691187 0.000000e+00 1236.0
8 TraesCS3B01G004400 chr7A 92.537 67 5 0 3185 3251 159583739 159583805 2.670000e-16 97.1
9 TraesCS3B01G004400 chr7A 95.161 62 2 1 3190 3251 485195294 485195234 2.670000e-16 97.1
10 TraesCS3B01G004400 chr5B 93.381 831 50 4 1 826 569540392 569539562 0.000000e+00 1225.0
11 TraesCS3B01G004400 chr1A 92.143 840 56 7 1 832 308577135 308577972 0.000000e+00 1177.0
12 TraesCS3B01G004400 chr1A 91.590 654 44 6 39 687 217609361 217610008 0.000000e+00 893.0
13 TraesCS3B01G004400 chr1A 98.214 56 1 0 3196 3251 241320007 241319952 7.420000e-17 99.0
14 TraesCS3B01G004400 chr1B 91.106 832 58 11 1 821 572152007 572152833 0.000000e+00 1112.0
15 TraesCS3B01G004400 chr2D 91.257 835 44 12 1 830 357974827 357975637 0.000000e+00 1110.0
16 TraesCS3B01G004400 chr5A 90.241 830 49 13 10 830 54468192 54467386 0.000000e+00 1055.0
17 TraesCS3B01G004400 chr1D 86.936 842 65 23 1 821 492128025 492128842 0.000000e+00 904.0
18 TraesCS3B01G004400 chr3D 82.667 675 76 15 1745 2410 2920464 2919822 7.880000e-156 560.0
19 TraesCS3B01G004400 chr3D 90.537 391 28 4 1417 1798 2997908 2997518 2.890000e-140 508.0
20 TraesCS3B01G004400 chr3D 95.578 294 13 0 1951 2244 2997516 2997223 3.800000e-129 472.0
21 TraesCS3B01G004400 chr3D 77.324 882 141 33 1119 1943 2991681 2990802 1.770000e-127 466.0
22 TraesCS3B01G004400 chr3D 85.542 415 22 12 830 1231 2998309 2997920 1.820000e-107 399.0
23 TraesCS3B01G004400 chr3D 91.549 71 5 1 3182 3251 516197258 516197328 2.670000e-16 97.1
24 TraesCS3B01G004400 chr3D 89.333 75 8 0 1144 1218 556805934 556805860 9.600000e-16 95.3
25 TraesCS3B01G004400 chr3A 84.337 332 31 12 462 792 675350501 675350812 4.080000e-79 305.0
26 TraesCS3B01G004400 chr3A 88.060 134 14 2 698 831 525211552 525211683 1.210000e-34 158.0
27 TraesCS3B01G004400 chr3A 98.276 58 1 0 3194 3251 475279710 475279767 5.740000e-18 102.0
28 TraesCS3B01G004400 chr4D 81.193 218 17 7 2995 3194 1819308 1819097 1.560000e-33 154.0
29 TraesCS3B01G004400 chr4D 80.734 218 18 7 2995 3194 1867326 1867115 7.270000e-32 148.0
30 TraesCS3B01G004400 chr2A 85.950 121 14 3 701 820 729204732 729204614 3.410000e-25 126.0
31 TraesCS3B01G004400 chr7D 95.161 62 3 0 3190 3251 448931407 448931346 7.420000e-17 99.0
32 TraesCS3B01G004400 chr5D 95.161 62 3 0 3190 3251 516635923 516635984 7.420000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G004400 chr3B 2503246 2506496 3250 False 6004.000000 6004 100.000000 1 3251 1 chr3B.!!$F1 3250
1 TraesCS3B01G004400 chr3B 17366567 17367402 835 False 1170.000000 1170 92.024000 1 832 1 chr3B.!!$F2 831
2 TraesCS3B01G004400 chrUn 32126136 32131833 5697 True 1250.000000 1982 84.786500 830 2287 2 chrUn.!!$R2 1457
3 TraesCS3B01G004400 chr7A 198691187 198692018 831 True 1236.000000 1236 93.533000 1 830 1 chr7A.!!$R1 829
4 TraesCS3B01G004400 chr5B 569539562 569540392 830 True 1225.000000 1225 93.381000 1 826 1 chr5B.!!$R1 825
5 TraesCS3B01G004400 chr1A 308577135 308577972 837 False 1177.000000 1177 92.143000 1 832 1 chr1A.!!$F2 831
6 TraesCS3B01G004400 chr1A 217609361 217610008 647 False 893.000000 893 91.590000 39 687 1 chr1A.!!$F1 648
7 TraesCS3B01G004400 chr1B 572152007 572152833 826 False 1112.000000 1112 91.106000 1 821 1 chr1B.!!$F1 820
8 TraesCS3B01G004400 chr2D 357974827 357975637 810 False 1110.000000 1110 91.257000 1 830 1 chr2D.!!$F1 829
9 TraesCS3B01G004400 chr5A 54467386 54468192 806 True 1055.000000 1055 90.241000 10 830 1 chr5A.!!$R1 820
10 TraesCS3B01G004400 chr1D 492128025 492128842 817 False 904.000000 904 86.936000 1 821 1 chr1D.!!$F1 820
11 TraesCS3B01G004400 chr3D 2919822 2920464 642 True 560.000000 560 82.667000 1745 2410 1 chr3D.!!$R1 665
12 TraesCS3B01G004400 chr3D 2990802 2991681 879 True 466.000000 466 77.324000 1119 1943 1 chr3D.!!$R2 824
13 TraesCS3B01G004400 chr3D 2997223 2998309 1086 True 459.666667 508 90.552333 830 2244 3 chr3D.!!$R4 1414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 739 0.325671 AGCGAGGAAGAAGGGGATCA 60.326 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2593 0.035458 CGAGGGATAAGACATGGGGC 59.965 60.0 0.0 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 214 3.487879 GGTCCGTCGAAGCTTTTTCAAAA 60.488 43.478 0.00 0.00 0.00 2.44
242 252 8.335356 GCTTTCATATGAACGATTGTAGCTTTA 58.665 33.333 22.33 2.10 33.13 1.85
277 287 9.632638 ATGGTGTCTTGTTGAAGCTTTATATAT 57.367 29.630 0.00 0.00 0.00 0.86
552 573 1.063649 GCATGGCGCTGACATTGAG 59.936 57.895 7.64 0.00 37.77 3.02
581 602 4.868116 GCGCGGGATTGGGGCTAA 62.868 66.667 8.83 0.00 39.91 3.09
582 603 2.124487 CGCGGGATTGGGGCTAAA 60.124 61.111 0.00 0.00 0.00 1.85
589 610 0.467290 GATTGGGGCTAAATGGCGGA 60.467 55.000 0.00 0.00 42.84 5.54
592 620 1.352622 TGGGGCTAAATGGCGGAGAT 61.353 55.000 0.00 0.00 42.84 2.75
649 680 4.717629 CGTGGACGCGGCTGAGAA 62.718 66.667 13.91 0.00 0.00 2.87
708 739 0.325671 AGCGAGGAAGAAGGGGATCA 60.326 55.000 0.00 0.00 0.00 2.92
744 775 4.918360 AGGGGCAGGTGGGTCACA 62.918 66.667 0.38 0.00 35.86 3.58
802 833 0.883370 GACCGGCCGAAAGTTTCAGT 60.883 55.000 30.73 12.79 0.00 3.41
821 852 3.192922 GGTGCGCCGCGTAGAAAT 61.193 61.111 15.34 0.00 0.00 2.17
826 857 0.370958 GCGCCGCGTAGAAATGTTTA 59.629 50.000 15.34 0.00 0.00 2.01
893 924 6.039717 AGTTGTATCTGTGAAAACTTGCACAT 59.960 34.615 3.70 0.00 43.34 3.21
894 925 6.000891 TGTATCTGTGAAAACTTGCACATC 57.999 37.500 3.70 0.00 43.34 3.06
895 926 5.764686 TGTATCTGTGAAAACTTGCACATCT 59.235 36.000 3.70 0.00 43.34 2.90
901 932 6.142139 TGTGAAAACTTGCACATCTTATTCG 58.858 36.000 0.00 0.00 39.86 3.34
902 933 6.142817 GTGAAAACTTGCACATCTTATTCGT 58.857 36.000 0.00 0.00 35.19 3.85
903 934 6.086765 GTGAAAACTTGCACATCTTATTCGTG 59.913 38.462 0.00 0.00 35.19 4.35
915 946 9.423061 CACATCTTATTCGTGATGGATATGTAA 57.577 33.333 7.69 0.00 42.96 2.41
916 947 9.424319 ACATCTTATTCGTGATGGATATGTAAC 57.576 33.333 7.69 0.00 42.96 2.50
988 1019 2.687935 CCGTTGGCTGGTGCTTTAATAT 59.312 45.455 0.00 0.00 39.59 1.28
990 1021 4.351192 CGTTGGCTGGTGCTTTAATATTC 58.649 43.478 0.00 0.00 39.59 1.75
992 1023 2.357637 TGGCTGGTGCTTTAATATTCGC 59.642 45.455 0.00 0.00 39.59 4.70
1010 1041 1.438814 CGCAAGCCATGATTTCCCC 59.561 57.895 0.00 0.00 0.00 4.81
1026 1057 1.221840 CCCATTCTCCACCAGACCG 59.778 63.158 0.00 0.00 0.00 4.79
1027 1058 1.553690 CCCATTCTCCACCAGACCGT 61.554 60.000 0.00 0.00 0.00 4.83
1028 1059 1.191535 CCATTCTCCACCAGACCGTA 58.808 55.000 0.00 0.00 0.00 4.02
1029 1060 1.134788 CCATTCTCCACCAGACCGTAC 60.135 57.143 0.00 0.00 0.00 3.67
1030 1061 0.815734 ATTCTCCACCAGACCGTACG 59.184 55.000 8.69 8.69 0.00 3.67
1052 1083 4.856801 ATCCGCAGCCGCCGAAAT 62.857 61.111 0.00 0.00 33.11 2.17
1054 1085 4.536687 CCGCAGCCGCCGAAATTC 62.537 66.667 0.00 0.00 33.11 2.17
1055 1086 3.798650 CGCAGCCGCCGAAATTCA 61.799 61.111 0.00 0.00 33.11 2.57
1056 1087 2.100991 GCAGCCGCCGAAATTCAG 59.899 61.111 0.00 0.00 0.00 3.02
1057 1088 2.793946 CAGCCGCCGAAATTCAGG 59.206 61.111 0.00 0.00 0.00 3.86
1075 1106 1.523032 GCCCAAACCCTACGATCCG 60.523 63.158 0.00 0.00 0.00 4.18
1080 1111 2.288788 AAACCCTACGATCCGCCGTC 62.289 60.000 0.00 0.00 43.20 4.79
1081 1112 4.323843 CCCTACGATCCGCCGTCG 62.324 72.222 0.00 0.00 43.20 5.12
1273 1332 1.738099 CCGCTGGTCTTCTTCCGTG 60.738 63.158 0.00 0.00 0.00 4.94
1277 1336 0.036010 CTGGTCTTCTTCCGTGCCAT 60.036 55.000 0.00 0.00 0.00 4.40
1378 1437 3.125829 CGCCTACGAAGACTACAACTACA 59.874 47.826 0.00 0.00 43.93 2.74
1435 1494 3.007290 CGGCCTCATCCTCATATCTTTCA 59.993 47.826 0.00 0.00 0.00 2.69
1439 1498 5.549347 CCTCATCCTCATATCTTTCACCAG 58.451 45.833 0.00 0.00 0.00 4.00
1443 1502 3.718434 TCCTCATATCTTTCACCAGCCAT 59.282 43.478 0.00 0.00 0.00 4.40
1464 1523 0.741221 GCTTCTACCTCTGCAACCCG 60.741 60.000 0.00 0.00 0.00 5.28
1485 1544 4.522689 ACGCGTCAGTGGTGCACA 62.523 61.111 20.43 1.62 36.74 4.57
1535 1594 1.229529 CCCTGTACCCTCACCACCT 60.230 63.158 0.00 0.00 0.00 4.00
1578 1637 1.286880 CTGGAAGCGCCCAAACAAG 59.713 57.895 2.29 0.00 35.47 3.16
1587 1646 1.298859 GCCCAAACAAGAGCGACGAT 61.299 55.000 0.00 0.00 0.00 3.73
1590 1655 1.531149 CCAAACAAGAGCGACGATGTT 59.469 47.619 0.00 0.00 35.89 2.71
1592 1657 1.865865 AACAAGAGCGACGATGTTGT 58.134 45.000 21.11 21.11 34.19 3.32
1614 1679 1.676635 CTACGTCCTCACCGTGGGA 60.677 63.158 0.00 2.28 39.22 4.37
1615 1680 1.930908 CTACGTCCTCACCGTGGGAC 61.931 65.000 20.83 20.83 46.00 4.46
1621 1686 0.666374 CCTCACCGTGGGACAAAAAC 59.334 55.000 0.00 0.00 44.16 2.43
1755 1850 1.299541 ACACTGTCAACGCCTTTGAG 58.700 50.000 0.00 0.00 45.23 3.02
1891 1993 1.860641 AGATGTCGGTACCATGACCA 58.139 50.000 13.54 4.02 39.72 4.02
1910 2012 0.249405 ACAAAAGCATGGGTGTTGCG 60.249 50.000 0.00 0.00 44.82 4.85
1973 2075 1.543944 TTGCCGGAGAGTCAGATGCA 61.544 55.000 5.05 0.00 0.00 3.96
2085 2187 0.321671 ATCGTTGGTCCCAGACACTG 59.678 55.000 0.00 0.00 33.68 3.66
2121 2223 0.107945 AGGGCGAGCTGATTGAGAAC 60.108 55.000 0.00 0.00 0.00 3.01
2127 2229 2.343843 CGAGCTGATTGAGAACTTCGTG 59.656 50.000 0.00 0.00 0.00 4.35
2208 2310 3.978687 TGTGTTCTTCGAGAGGAAAGAC 58.021 45.455 0.00 1.52 33.34 3.01
2216 2318 0.320771 GAGAGGAAAGACGGCAAGCA 60.321 55.000 0.00 0.00 0.00 3.91
2232 2334 2.177531 CATGTGAAGCTGCCACGC 59.822 61.111 12.92 0.00 37.34 5.34
2271 2382 2.685100 GGAGAAAACGTCTACCACCAG 58.315 52.381 0.00 0.00 36.41 4.00
2292 2403 1.939974 TCATGGTTATCGCTGTGAGC 58.060 50.000 0.00 0.00 38.02 4.26
2293 2404 0.940126 CATGGTTATCGCTGTGAGCC 59.060 55.000 0.00 0.16 38.18 4.70
2294 2405 0.833287 ATGGTTATCGCTGTGAGCCT 59.167 50.000 0.00 0.00 38.18 4.58
2295 2406 0.108186 TGGTTATCGCTGTGAGCCTG 60.108 55.000 0.00 0.00 38.18 4.85
2296 2407 0.108138 GGTTATCGCTGTGAGCCTGT 60.108 55.000 0.00 0.00 38.18 4.00
2297 2408 1.002366 GTTATCGCTGTGAGCCTGTG 58.998 55.000 0.00 0.00 38.18 3.66
2298 2409 0.894835 TTATCGCTGTGAGCCTGTGA 59.105 50.000 0.00 0.00 38.18 3.58
2299 2410 0.894835 TATCGCTGTGAGCCTGTGAA 59.105 50.000 0.00 0.00 38.18 3.18
2300 2411 0.390866 ATCGCTGTGAGCCTGTGAAG 60.391 55.000 0.00 0.00 38.18 3.02
2301 2412 2.031516 CGCTGTGAGCCTGTGAAGG 61.032 63.158 0.00 0.00 38.18 3.46
2302 2413 1.372683 GCTGTGAGCCTGTGAAGGA 59.627 57.895 0.00 0.00 34.48 3.36
2303 2414 0.250467 GCTGTGAGCCTGTGAAGGAA 60.250 55.000 0.00 0.00 34.48 3.36
2332 2443 6.540914 TGGGAAATAATTTCTACATGTCGGAC 59.459 38.462 0.00 0.00 39.59 4.79
2333 2444 6.017357 GGGAAATAATTTCTACATGTCGGACC 60.017 42.308 0.00 0.00 39.59 4.46
2338 2449 0.034767 TCTACATGTCGGACCGAGGT 60.035 55.000 18.98 17.70 36.23 3.85
2344 2455 2.116772 TCGGACCGAGGTTGGACT 59.883 61.111 13.88 0.00 0.00 3.85
2345 2456 1.975407 TCGGACCGAGGTTGGACTC 60.975 63.158 13.88 0.00 0.00 3.36
2384 2495 4.199310 ACCCGTCTATCCATTTCATGTTG 58.801 43.478 0.00 0.00 0.00 3.33
2401 2512 8.806177 TTCATGTTGAAAGCATTATATGATGC 57.194 30.769 21.55 21.55 40.90 3.91
2414 2525 7.010738 GCATTATATGATGCCAATGTTAATGCC 59.989 37.037 19.12 0.00 45.16 4.40
2415 2526 7.536159 TTATATGATGCCAATGTTAATGCCA 57.464 32.000 0.00 0.00 0.00 4.92
2416 2527 4.757019 ATGATGCCAATGTTAATGCCAA 57.243 36.364 0.00 0.00 0.00 4.52
2417 2528 4.548451 TGATGCCAATGTTAATGCCAAA 57.452 36.364 0.00 0.00 0.00 3.28
2418 2529 4.252073 TGATGCCAATGTTAATGCCAAAC 58.748 39.130 0.00 0.00 0.00 2.93
2420 2531 4.348863 TGCCAATGTTAATGCCAAACTT 57.651 36.364 0.00 0.00 0.00 2.66
2421 2532 4.712476 TGCCAATGTTAATGCCAAACTTT 58.288 34.783 0.00 0.00 0.00 2.66
2424 2535 5.334802 GCCAATGTTAATGCCAAACTTTTCC 60.335 40.000 0.00 0.00 0.00 3.13
2425 2536 5.997129 CCAATGTTAATGCCAAACTTTTCCT 59.003 36.000 0.00 0.00 0.00 3.36
2426 2537 6.486320 CCAATGTTAATGCCAAACTTTTCCTT 59.514 34.615 0.00 0.00 0.00 3.36
2434 2556 8.422577 AATGCCAAACTTTTCCTTATAGTTCT 57.577 30.769 0.00 0.00 31.26 3.01
2435 2557 7.214467 TGCCAAACTTTTCCTTATAGTTCTG 57.786 36.000 0.00 0.00 31.26 3.02
2448 2570 6.038271 CCTTATAGTTCTGTTATTGGTGGCAC 59.962 42.308 9.70 9.70 0.00 5.01
2452 2574 0.881118 CTGTTATTGGTGGCACGCTT 59.119 50.000 12.17 0.71 39.78 4.68
2467 2589 1.867233 ACGCTTAACTGCTGACAACAG 59.133 47.619 4.28 4.28 45.91 3.16
2471 2593 4.470462 GCTTAACTGCTGACAACAGAATG 58.530 43.478 12.74 4.31 46.03 2.67
2473 2595 1.242076 ACTGCTGACAACAGAATGCC 58.758 50.000 12.74 0.00 46.03 4.40
2475 2597 0.895100 TGCTGACAACAGAATGCCCC 60.895 55.000 0.00 0.00 46.03 5.80
2478 2600 1.475280 CTGACAACAGAATGCCCCATG 59.525 52.381 0.00 0.00 46.03 3.66
2485 2610 3.825328 ACAGAATGCCCCATGTCTTATC 58.175 45.455 0.00 0.00 42.53 1.75
2488 2613 1.838611 ATGCCCCATGTCTTATCCCT 58.161 50.000 0.00 0.00 0.00 4.20
2489 2614 1.140312 TGCCCCATGTCTTATCCCTC 58.860 55.000 0.00 0.00 0.00 4.30
2512 2637 4.413087 GTCGATCAACAAGACATCGTAGT 58.587 43.478 0.00 0.00 40.28 2.73
2515 2640 5.344933 TCGATCAACAAGACATCGTAGTTTG 59.655 40.000 0.00 0.00 40.28 2.93
2519 2644 6.711579 TCAACAAGACATCGTAGTTTGTTTC 58.288 36.000 13.95 0.00 39.25 2.78
2520 2645 6.314152 TCAACAAGACATCGTAGTTTGTTTCA 59.686 34.615 13.95 7.23 39.25 2.69
2521 2646 6.287107 ACAAGACATCGTAGTTTGTTTCAG 57.713 37.500 0.00 0.00 0.00 3.02
2542 2670 8.662781 TTCAGAAAATTATCAGAATAGACCGG 57.337 34.615 0.00 0.00 0.00 5.28
2548 2676 3.742433 ATCAGAATAGACCGGAGCTTG 57.258 47.619 9.46 0.16 0.00 4.01
2550 2678 2.832129 TCAGAATAGACCGGAGCTTGTT 59.168 45.455 9.46 3.91 0.00 2.83
2555 2683 1.884235 AGACCGGAGCTTGTTTTCAG 58.116 50.000 9.46 0.00 0.00 3.02
2557 2685 1.947456 GACCGGAGCTTGTTTTCAGTT 59.053 47.619 9.46 0.00 0.00 3.16
2565 2693 6.564125 CGGAGCTTGTTTTCAGTTAAGTAGTG 60.564 42.308 0.00 0.00 0.00 2.74
2575 2705 8.658499 TTTCAGTTAAGTAGTGAAAGAAGGTC 57.342 34.615 4.19 0.00 46.32 3.85
2584 2714 8.418597 AGTAGTGAAAGAAGGTCTGTAACATA 57.581 34.615 0.00 0.00 0.00 2.29
2586 2716 9.485206 GTAGTGAAAGAAGGTCTGTAACATAAA 57.515 33.333 0.00 0.00 0.00 1.40
2588 2718 9.403583 AGTGAAAGAAGGTCTGTAACATAAAAA 57.596 29.630 0.00 0.00 0.00 1.94
2589 2719 9.665264 GTGAAAGAAGGTCTGTAACATAAAAAG 57.335 33.333 0.00 0.00 0.00 2.27
2590 2720 9.403583 TGAAAGAAGGTCTGTAACATAAAAAGT 57.596 29.630 0.00 0.00 0.00 2.66
2596 2726 9.636789 AAGGTCTGTAACATAAAAAGTTTAGGT 57.363 29.630 0.00 0.00 0.00 3.08
2597 2727 9.063615 AGGTCTGTAACATAAAAAGTTTAGGTG 57.936 33.333 0.00 0.00 0.00 4.00
2603 2733 9.597999 GTAACATAAAAAGTTTAGGTGTTACCG 57.402 33.333 23.22 6.39 44.90 4.02
2604 2734 7.806409 ACATAAAAAGTTTAGGTGTTACCGT 57.194 32.000 0.00 0.00 44.90 4.83
2612 2742 9.777297 AAAGTTTAGGTGTTACCGTATTTTAGA 57.223 29.630 0.00 0.00 44.90 2.10
2613 2743 8.992835 AGTTTAGGTGTTACCGTATTTTAGAG 57.007 34.615 0.00 0.00 44.90 2.43
2614 2744 8.806146 AGTTTAGGTGTTACCGTATTTTAGAGA 58.194 33.333 0.00 0.00 44.90 3.10
2615 2745 9.080915 GTTTAGGTGTTACCGTATTTTAGAGAG 57.919 37.037 0.00 0.00 44.90 3.20
2616 2746 8.579850 TTAGGTGTTACCGTATTTTAGAGAGA 57.420 34.615 0.00 0.00 44.90 3.10
2617 2747 7.657023 AGGTGTTACCGTATTTTAGAGAGAT 57.343 36.000 0.00 0.00 44.90 2.75
2618 2748 8.075761 AGGTGTTACCGTATTTTAGAGAGATT 57.924 34.615 0.00 0.00 44.90 2.40
2619 2749 8.537858 AGGTGTTACCGTATTTTAGAGAGATTT 58.462 33.333 0.00 0.00 44.90 2.17
2620 2750 9.159364 GGTGTTACCGTATTTTAGAGAGATTTT 57.841 33.333 0.00 0.00 0.00 1.82
2658 2788 7.066525 AGACTAGAATCTACAAGACGAGGAAAG 59.933 40.741 0.00 0.00 0.00 2.62
2666 2796 2.256117 AGACGAGGAAAGGGTGTTTG 57.744 50.000 0.00 0.00 0.00 2.93
2677 2807 5.182190 GGAAAGGGTGTTTGAGAGAGATTTC 59.818 44.000 0.00 0.00 0.00 2.17
2682 2812 5.353678 GGGTGTTTGAGAGAGATTTCTGATG 59.646 44.000 0.00 0.00 32.53 3.07
2690 2820 5.916318 AGAGAGATTTCTGATGGCTTACAG 58.084 41.667 0.00 0.00 32.53 2.74
2694 2824 7.669427 AGAGATTTCTGATGGCTTACAGATAG 58.331 38.462 0.00 0.00 41.71 2.08
2695 2825 7.508636 AGAGATTTCTGATGGCTTACAGATAGA 59.491 37.037 0.00 0.00 41.71 1.98
2696 2826 7.669427 AGATTTCTGATGGCTTACAGATAGAG 58.331 38.462 0.00 0.00 41.71 2.43
2697 2827 4.862902 TCTGATGGCTTACAGATAGAGC 57.137 45.455 0.00 0.00 38.08 4.09
2699 2829 4.651045 TCTGATGGCTTACAGATAGAGCAA 59.349 41.667 0.00 0.00 38.08 3.91
2700 2830 4.953667 TGATGGCTTACAGATAGAGCAAG 58.046 43.478 0.00 0.00 38.14 4.01
2701 2831 3.185246 TGGCTTACAGATAGAGCAAGC 57.815 47.619 0.00 0.00 40.65 4.01
2703 2833 3.129871 GGCTTACAGATAGAGCAAGCAG 58.870 50.000 6.91 0.00 42.63 4.24
2704 2834 3.181471 GGCTTACAGATAGAGCAAGCAGA 60.181 47.826 6.91 0.00 42.63 4.26
2705 2835 4.050553 GCTTACAGATAGAGCAAGCAGAG 58.949 47.826 0.00 0.00 40.96 3.35
2706 2836 4.619973 CTTACAGATAGAGCAAGCAGAGG 58.380 47.826 0.00 0.00 0.00 3.69
2707 2837 2.744760 ACAGATAGAGCAAGCAGAGGA 58.255 47.619 0.00 0.00 0.00 3.71
2708 2838 3.102972 ACAGATAGAGCAAGCAGAGGAA 58.897 45.455 0.00 0.00 0.00 3.36
2709 2839 3.132646 ACAGATAGAGCAAGCAGAGGAAG 59.867 47.826 0.00 0.00 0.00 3.46
2710 2840 2.102925 AGATAGAGCAAGCAGAGGAAGC 59.897 50.000 0.00 0.00 0.00 3.86
2711 2841 1.566211 TAGAGCAAGCAGAGGAAGCT 58.434 50.000 0.00 0.00 45.97 3.74
2712 2842 0.036199 AGAGCAAGCAGAGGAAGCTG 60.036 55.000 0.00 0.00 42.53 4.24
2714 2844 0.321475 AGCAAGCAGAGGAAGCTGAC 60.321 55.000 0.00 0.00 42.53 3.51
2715 2845 0.321475 GCAAGCAGAGGAAGCTGACT 60.321 55.000 0.00 0.00 42.53 3.41
2716 2846 1.440708 CAAGCAGAGGAAGCTGACTG 58.559 55.000 0.00 0.00 42.53 3.51
2717 2847 3.887783 GCAGAGGAAGCTGACTGC 58.112 61.111 15.15 15.15 46.25 4.40
2719 2849 3.857217 CAGAGGAAGCTGACTGCAT 57.143 52.632 7.11 0.00 45.94 3.96
2720 2850 2.975732 CAGAGGAAGCTGACTGCATA 57.024 50.000 7.11 0.00 45.94 3.14
2722 2852 4.597404 CAGAGGAAGCTGACTGCATATA 57.403 45.455 7.11 0.00 45.94 0.86
2723 2853 5.149973 CAGAGGAAGCTGACTGCATATAT 57.850 43.478 7.11 0.00 45.94 0.86
2724 2854 4.930405 CAGAGGAAGCTGACTGCATATATG 59.070 45.833 8.45 8.45 45.94 1.78
2725 2855 4.837298 AGAGGAAGCTGACTGCATATATGA 59.163 41.667 17.10 1.24 45.94 2.15
2726 2856 5.484644 AGAGGAAGCTGACTGCATATATGAT 59.515 40.000 17.10 0.62 45.94 2.45
2727 2857 5.732633 AGGAAGCTGACTGCATATATGATC 58.267 41.667 17.10 10.33 45.94 2.92
2728 2858 5.247792 AGGAAGCTGACTGCATATATGATCA 59.752 40.000 17.10 13.92 45.94 2.92
2729 2859 6.070136 AGGAAGCTGACTGCATATATGATCAT 60.070 38.462 17.10 13.81 45.94 2.45
2730 2860 7.125356 AGGAAGCTGACTGCATATATGATCATA 59.875 37.037 17.56 17.56 45.94 2.15
2731 2861 7.932491 GGAAGCTGACTGCATATATGATCATAT 59.068 37.037 27.06 27.06 45.94 1.78
2732 2862 9.327628 GAAGCTGACTGCATATATGATCATATT 57.672 33.333 28.60 15.93 45.94 1.28
2767 2897 9.696917 GTAAAATTAATCCCTTTGCATGATAGG 57.303 33.333 0.00 0.00 0.00 2.57
2776 2906 6.906157 CCTTTGCATGATAGGGACAATATT 57.094 37.500 0.00 0.00 0.00 1.28
2777 2907 7.294017 CCTTTGCATGATAGGGACAATATTT 57.706 36.000 0.00 0.00 0.00 1.40
2778 2908 7.149973 CCTTTGCATGATAGGGACAATATTTG 58.850 38.462 0.00 0.00 0.00 2.32
2779 2909 5.710513 TGCATGATAGGGACAATATTTGC 57.289 39.130 0.00 0.00 0.00 3.68
2780 2910 5.387788 TGCATGATAGGGACAATATTTGCT 58.612 37.500 0.00 0.00 0.00 3.91
2781 2911 5.242171 TGCATGATAGGGACAATATTTGCTG 59.758 40.000 0.00 0.00 0.00 4.41
2782 2912 5.474532 GCATGATAGGGACAATATTTGCTGA 59.525 40.000 0.00 0.00 0.00 4.26
2783 2913 6.016024 GCATGATAGGGACAATATTTGCTGAA 60.016 38.462 0.00 0.00 0.00 3.02
2784 2914 7.309621 GCATGATAGGGACAATATTTGCTGAAT 60.310 37.037 0.00 0.00 0.00 2.57
2785 2915 8.582437 CATGATAGGGACAATATTTGCTGAATT 58.418 33.333 0.00 0.00 0.00 2.17
2786 2916 8.537728 TGATAGGGACAATATTTGCTGAATTT 57.462 30.769 0.00 0.00 0.00 1.82
2787 2917 8.980596 TGATAGGGACAATATTTGCTGAATTTT 58.019 29.630 0.00 0.00 0.00 1.82
2788 2918 9.822185 GATAGGGACAATATTTGCTGAATTTTT 57.178 29.630 0.00 0.00 0.00 1.94
2791 2921 9.657419 AGGGACAATATTTGCTGAATTTTTAAG 57.343 29.630 0.00 0.00 0.00 1.85
2792 2922 9.651913 GGGACAATATTTGCTGAATTTTTAAGA 57.348 29.630 0.00 0.00 0.00 2.10
2800 2930 8.633075 TTTGCTGAATTTTTAAGAGTTGTCTG 57.367 30.769 0.00 0.00 31.37 3.51
2801 2931 6.738114 TGCTGAATTTTTAAGAGTTGTCTGG 58.262 36.000 0.00 0.00 31.37 3.86
2802 2932 6.321181 TGCTGAATTTTTAAGAGTTGTCTGGT 59.679 34.615 0.00 0.00 31.37 4.00
2803 2933 7.147915 TGCTGAATTTTTAAGAGTTGTCTGGTT 60.148 33.333 0.00 0.00 31.37 3.67
2804 2934 7.706607 GCTGAATTTTTAAGAGTTGTCTGGTTT 59.293 33.333 0.00 0.00 31.37 3.27
2805 2935 9.237846 CTGAATTTTTAAGAGTTGTCTGGTTTC 57.762 33.333 0.00 0.00 31.37 2.78
2806 2936 7.913297 TGAATTTTTAAGAGTTGTCTGGTTTCG 59.087 33.333 0.00 0.00 31.37 3.46
2807 2937 6.988622 TTTTTAAGAGTTGTCTGGTTTCGA 57.011 33.333 0.00 0.00 31.37 3.71
2808 2938 6.598753 TTTTAAGAGTTGTCTGGTTTCGAG 57.401 37.500 0.00 0.00 31.37 4.04
2809 2939 2.821991 AGAGTTGTCTGGTTTCGAGG 57.178 50.000 0.00 0.00 0.00 4.63
2810 2940 1.344763 AGAGTTGTCTGGTTTCGAGGG 59.655 52.381 0.00 0.00 0.00 4.30
2811 2941 1.070289 GAGTTGTCTGGTTTCGAGGGT 59.930 52.381 0.00 0.00 0.00 4.34
2812 2942 1.202651 AGTTGTCTGGTTTCGAGGGTG 60.203 52.381 0.00 0.00 0.00 4.61
2813 2943 1.124780 TTGTCTGGTTTCGAGGGTGA 58.875 50.000 0.00 0.00 0.00 4.02
2814 2944 1.124780 TGTCTGGTTTCGAGGGTGAA 58.875 50.000 0.00 0.00 0.00 3.18
2815 2945 1.697432 TGTCTGGTTTCGAGGGTGAAT 59.303 47.619 0.00 0.00 0.00 2.57
2816 2946 2.105821 TGTCTGGTTTCGAGGGTGAATT 59.894 45.455 0.00 0.00 0.00 2.17
2817 2947 2.742589 GTCTGGTTTCGAGGGTGAATTC 59.257 50.000 0.00 0.00 0.00 2.17
2818 2948 2.637872 TCTGGTTTCGAGGGTGAATTCT 59.362 45.455 7.05 0.00 0.00 2.40
2819 2949 2.744202 CTGGTTTCGAGGGTGAATTCTG 59.256 50.000 7.05 0.00 0.00 3.02
2820 2950 2.370519 TGGTTTCGAGGGTGAATTCTGA 59.629 45.455 7.05 0.00 0.00 3.27
2821 2951 3.009033 TGGTTTCGAGGGTGAATTCTGAT 59.991 43.478 7.05 0.00 0.00 2.90
2832 2962 9.784531 GAGGGTGAATTCTGATTTCTGAATATA 57.215 33.333 7.05 3.80 41.58 0.86
2846 2976 9.681062 ATTTCTGAATATACATATAAACCGGGG 57.319 33.333 6.32 0.00 0.00 5.73
2847 2977 6.646267 TCTGAATATACATATAAACCGGGGC 58.354 40.000 6.32 0.00 0.00 5.80
2849 2979 6.964464 TGAATATACATATAAACCGGGGCAT 58.036 36.000 6.32 0.00 0.00 4.40
2850 2980 7.051623 TGAATATACATATAAACCGGGGCATC 58.948 38.462 6.32 0.00 0.00 3.91
2851 2981 4.919774 ATACATATAAACCGGGGCATCA 57.080 40.909 6.32 0.00 0.00 3.07
2853 2983 2.173782 ACATATAAACCGGGGCATCACA 59.826 45.455 6.32 0.00 0.00 3.58
2854 2984 3.181434 ACATATAAACCGGGGCATCACAT 60.181 43.478 6.32 0.00 0.00 3.21
2855 2985 1.691196 ATAAACCGGGGCATCACATG 58.309 50.000 6.32 0.00 0.00 3.21
2856 2986 0.621082 TAAACCGGGGCATCACATGA 59.379 50.000 6.32 0.00 0.00 3.07
2857 2987 0.033208 AAACCGGGGCATCACATGAT 60.033 50.000 6.32 0.00 34.56 2.45
2859 2989 0.752743 ACCGGGGCATCACATGATTG 60.753 55.000 6.32 0.00 31.21 2.67
2860 2990 1.457823 CCGGGGCATCACATGATTGG 61.458 60.000 0.00 0.00 31.21 3.16
2861 2991 0.752743 CGGGGCATCACATGATTGGT 60.753 55.000 0.00 0.00 31.21 3.67
2863 2993 2.665165 GGGGCATCACATGATTGGTAA 58.335 47.619 0.00 0.00 31.21 2.85
2864 2994 2.624838 GGGGCATCACATGATTGGTAAG 59.375 50.000 0.00 0.00 31.21 2.34
2865 2995 2.624838 GGGCATCACATGATTGGTAAGG 59.375 50.000 0.00 0.00 31.21 2.69
2866 2996 3.290710 GGCATCACATGATTGGTAAGGT 58.709 45.455 0.00 0.00 31.21 3.50
2867 2997 3.701040 GGCATCACATGATTGGTAAGGTT 59.299 43.478 0.00 0.00 31.21 3.50
2868 2998 4.160252 GGCATCACATGATTGGTAAGGTTT 59.840 41.667 0.00 0.00 31.21 3.27
2869 2999 5.343249 GCATCACATGATTGGTAAGGTTTC 58.657 41.667 0.00 0.00 31.21 2.78
2870 3000 5.105797 GCATCACATGATTGGTAAGGTTTCA 60.106 40.000 0.00 0.00 31.21 2.69
2871 3001 5.957842 TCACATGATTGGTAAGGTTTCAC 57.042 39.130 0.00 0.00 0.00 3.18
2872 3002 5.630121 TCACATGATTGGTAAGGTTTCACT 58.370 37.500 0.00 0.00 0.00 3.41
2873 3003 5.473162 TCACATGATTGGTAAGGTTTCACTG 59.527 40.000 0.00 0.00 0.00 3.66
2874 3004 5.241506 CACATGATTGGTAAGGTTTCACTGT 59.758 40.000 0.00 0.00 0.00 3.55
2875 3005 5.473504 ACATGATTGGTAAGGTTTCACTGTC 59.526 40.000 0.00 0.00 0.00 3.51
2876 3006 4.062293 TGATTGGTAAGGTTTCACTGTCG 58.938 43.478 0.00 0.00 0.00 4.35
2878 3008 3.547054 TGGTAAGGTTTCACTGTCGTT 57.453 42.857 0.00 0.00 0.00 3.85
2880 3010 5.021033 TGGTAAGGTTTCACTGTCGTTAA 57.979 39.130 0.00 0.00 0.00 2.01
2881 3011 5.613329 TGGTAAGGTTTCACTGTCGTTAAT 58.387 37.500 0.00 0.00 0.00 1.40
2883 3013 7.215789 TGGTAAGGTTTCACTGTCGTTAATTA 58.784 34.615 0.00 0.00 0.00 1.40
2886 3016 7.972832 AAGGTTTCACTGTCGTTAATTATCA 57.027 32.000 0.00 0.00 0.00 2.15
2888 3018 7.383687 AGGTTTCACTGTCGTTAATTATCAGA 58.616 34.615 11.59 0.00 0.00 3.27
2889 3019 8.041323 AGGTTTCACTGTCGTTAATTATCAGAT 58.959 33.333 11.59 0.00 0.00 2.90
2894 3024 9.516314 TCACTGTCGTTAATTATCAGATTAGTG 57.484 33.333 16.07 16.07 33.88 2.74
2895 3025 9.302345 CACTGTCGTTAATTATCAGATTAGTGT 57.698 33.333 11.59 0.00 31.00 3.55
2896 3026 9.302345 ACTGTCGTTAATTATCAGATTAGTGTG 57.698 33.333 11.59 0.00 0.00 3.82
2897 3027 8.642908 TGTCGTTAATTATCAGATTAGTGTGG 57.357 34.615 0.00 0.00 0.00 4.17
2898 3028 8.255206 TGTCGTTAATTATCAGATTAGTGTGGT 58.745 33.333 0.00 0.00 0.00 4.16
2899 3029 8.540492 GTCGTTAATTATCAGATTAGTGTGGTG 58.460 37.037 0.00 0.00 0.00 4.17
2901 3031 7.042051 CGTTAATTATCAGATTAGTGTGGTGGG 60.042 40.741 0.00 0.00 0.00 4.61
2902 3032 4.771114 TTATCAGATTAGTGTGGTGGGG 57.229 45.455 0.00 0.00 0.00 4.96
2903 3033 0.618458 TCAGATTAGTGTGGTGGGGC 59.382 55.000 0.00 0.00 0.00 5.80
2905 3035 1.064463 CAGATTAGTGTGGTGGGGCAT 60.064 52.381 0.00 0.00 0.00 4.40
2906 3036 1.064463 AGATTAGTGTGGTGGGGCATG 60.064 52.381 0.00 0.00 0.00 4.06
2907 3037 0.033208 ATTAGTGTGGTGGGGCATGG 60.033 55.000 0.00 0.00 0.00 3.66
2908 3038 2.779742 TTAGTGTGGTGGGGCATGGC 62.780 60.000 11.56 11.56 0.00 4.40
2909 3039 4.684134 GTGTGGTGGGGCATGGCT 62.684 66.667 19.78 0.00 0.00 4.75
2910 3040 3.913445 TGTGGTGGGGCATGGCTT 61.913 61.111 19.78 0.00 0.00 4.35
2911 3041 2.358619 GTGGTGGGGCATGGCTTA 59.641 61.111 19.78 5.56 0.00 3.09
2912 3042 1.076044 GTGGTGGGGCATGGCTTAT 60.076 57.895 19.78 0.00 0.00 1.73
2913 3043 0.687427 GTGGTGGGGCATGGCTTATT 60.687 55.000 19.78 0.00 0.00 1.40
2914 3044 0.042431 TGGTGGGGCATGGCTTATTT 59.958 50.000 19.78 0.00 0.00 1.40
2916 3046 2.090831 TGGTGGGGCATGGCTTATTTAT 60.091 45.455 19.78 0.00 0.00 1.40
2917 3047 2.562738 GGTGGGGCATGGCTTATTTATC 59.437 50.000 19.78 0.00 0.00 1.75
2918 3048 3.230134 GTGGGGCATGGCTTATTTATCA 58.770 45.455 19.78 2.74 0.00 2.15
2919 3049 3.256631 GTGGGGCATGGCTTATTTATCAG 59.743 47.826 19.78 0.00 0.00 2.90
2921 3051 4.202706 TGGGGCATGGCTTATTTATCAGAT 60.203 41.667 19.78 0.00 0.00 2.90
2923 3053 5.105595 GGGGCATGGCTTATTTATCAGATTC 60.106 44.000 19.78 0.00 0.00 2.52
2924 3054 5.477984 GGGCATGGCTTATTTATCAGATTCA 59.522 40.000 19.78 0.00 0.00 2.57
2925 3055 6.154021 GGGCATGGCTTATTTATCAGATTCAT 59.846 38.462 19.78 0.00 0.00 2.57
2927 3057 6.530534 GCATGGCTTATTTATCAGATTCATGC 59.469 38.462 0.00 0.00 44.00 4.06
2928 3058 7.599171 CATGGCTTATTTATCAGATTCATGCA 58.401 34.615 0.00 0.00 0.00 3.96
2930 3060 7.823665 TGGCTTATTTATCAGATTCATGCATC 58.176 34.615 0.00 0.00 0.00 3.91
2931 3061 7.449086 TGGCTTATTTATCAGATTCATGCATCA 59.551 33.333 8.09 0.00 0.00 3.07
2932 3062 7.754027 GGCTTATTTATCAGATTCATGCATCAC 59.246 37.037 8.09 0.00 0.00 3.06
2936 3066 7.868906 TTTATCAGATTCATGCATCACTTGA 57.131 32.000 8.09 3.53 0.00 3.02
2937 3067 8.459911 TTTATCAGATTCATGCATCACTTGAT 57.540 30.769 8.09 10.06 32.89 2.57
2938 3068 6.961360 ATCAGATTCATGCATCACTTGATT 57.039 33.333 8.09 0.00 32.89 2.57
2939 3069 6.131544 TCAGATTCATGCATCACTTGATTG 57.868 37.500 8.09 0.00 32.89 2.67
2940 3070 5.067283 TCAGATTCATGCATCACTTGATTGG 59.933 40.000 8.09 0.00 32.89 3.16
2941 3071 4.954202 AGATTCATGCATCACTTGATTGGT 59.046 37.500 8.09 0.00 32.89 3.67
2943 3073 6.604396 AGATTCATGCATCACTTGATTGGTAA 59.396 34.615 8.09 0.00 32.89 2.85
2944 3074 5.823209 TCATGCATCACTTGATTGGTAAG 57.177 39.130 0.00 0.00 31.21 2.34
2945 3075 4.641541 TCATGCATCACTTGATTGGTAAGG 59.358 41.667 0.00 0.00 31.21 2.69
2946 3076 4.032960 TGCATCACTTGATTGGTAAGGT 57.967 40.909 0.00 0.00 31.21 3.50
2947 3077 4.406456 TGCATCACTTGATTGGTAAGGTT 58.594 39.130 0.00 0.00 31.21 3.50
2948 3078 4.832266 TGCATCACTTGATTGGTAAGGTTT 59.168 37.500 0.00 0.00 31.21 3.27
2949 3079 5.048083 TGCATCACTTGATTGGTAAGGTTTC 60.048 40.000 0.00 0.00 31.21 2.78
2952 3082 5.441500 TCACTTGATTGGTAAGGTTTCACA 58.558 37.500 0.00 0.00 0.00 3.58
2953 3083 5.530915 TCACTTGATTGGTAAGGTTTCACAG 59.469 40.000 0.00 0.00 0.00 3.66
2955 3085 5.531287 ACTTGATTGGTAAGGTTTCACAGAC 59.469 40.000 0.00 0.00 0.00 3.51
2956 3086 5.304686 TGATTGGTAAGGTTTCACAGACT 57.695 39.130 0.00 0.00 0.00 3.24
2957 3087 5.063204 TGATTGGTAAGGTTTCACAGACTG 58.937 41.667 0.00 0.00 0.00 3.51
2958 3088 2.846193 TGGTAAGGTTTCACAGACTGC 58.154 47.619 1.25 0.00 0.00 4.40
2959 3089 2.438021 TGGTAAGGTTTCACAGACTGCT 59.562 45.455 1.25 0.00 0.00 4.24
2960 3090 3.067833 GGTAAGGTTTCACAGACTGCTC 58.932 50.000 1.25 0.00 0.00 4.26
2961 3091 3.494398 GGTAAGGTTTCACAGACTGCTCA 60.494 47.826 1.25 0.00 0.00 4.26
2962 3092 2.246719 AGGTTTCACAGACTGCTCAC 57.753 50.000 1.25 0.00 0.00 3.51
2963 3093 1.202698 AGGTTTCACAGACTGCTCACC 60.203 52.381 1.25 4.11 0.00 4.02
2965 3095 2.288666 GTTTCACAGACTGCTCACCAA 58.711 47.619 1.25 0.00 0.00 3.67
2967 3097 1.953559 TCACAGACTGCTCACCAAAC 58.046 50.000 1.25 0.00 0.00 2.93
2969 3099 2.016318 CACAGACTGCTCACCAAACAA 58.984 47.619 1.25 0.00 0.00 2.83
2970 3100 2.423185 CACAGACTGCTCACCAAACAAA 59.577 45.455 1.25 0.00 0.00 2.83
2971 3101 3.088532 ACAGACTGCTCACCAAACAAAA 58.911 40.909 1.25 0.00 0.00 2.44
2972 3102 3.509575 ACAGACTGCTCACCAAACAAAAA 59.490 39.130 1.25 0.00 0.00 1.94
3003 3133 2.253513 AAAAAGACCGCCGGTGATG 58.746 52.632 16.53 2.60 35.25 3.07
3004 3134 1.862602 AAAAAGACCGCCGGTGATGC 61.863 55.000 16.53 0.00 35.25 3.91
3005 3135 2.748058 AAAAGACCGCCGGTGATGCT 62.748 55.000 16.53 0.03 35.25 3.79
3006 3136 3.958147 AAGACCGCCGGTGATGCTG 62.958 63.158 16.53 0.87 35.25 4.41
3007 3137 4.451150 GACCGCCGGTGATGCTGA 62.451 66.667 16.53 0.00 35.25 4.26
3008 3138 3.740128 GACCGCCGGTGATGCTGAT 62.740 63.158 16.53 0.00 35.25 2.90
3009 3139 3.274586 CCGCCGGTGATGCTGATG 61.275 66.667 18.79 0.00 0.00 3.07
3010 3140 3.945434 CGCCGGTGATGCTGATGC 61.945 66.667 10.20 0.00 40.20 3.91
3011 3141 3.589881 GCCGGTGATGCTGATGCC 61.590 66.667 1.90 0.00 38.71 4.40
3012 3142 2.124612 CCGGTGATGCTGATGCCA 60.125 61.111 0.00 0.00 38.71 4.92
3013 3143 1.750018 CCGGTGATGCTGATGCCAA 60.750 57.895 0.00 0.00 38.71 4.52
3016 3146 1.135527 CGGTGATGCTGATGCCAAAAT 59.864 47.619 0.00 0.00 38.71 1.82
3017 3147 2.546778 GGTGATGCTGATGCCAAAATG 58.453 47.619 0.00 0.00 38.71 2.32
3018 3148 2.546778 GTGATGCTGATGCCAAAATGG 58.453 47.619 0.00 0.00 41.55 3.16
3020 3150 2.166870 TGATGCTGATGCCAAAATGGTC 59.833 45.455 0.00 0.00 40.46 4.02
3022 3152 1.546923 TGCTGATGCCAAAATGGTCAG 59.453 47.619 10.92 10.92 41.19 3.51
3023 3153 1.134907 GCTGATGCCAAAATGGTCAGG 60.135 52.381 15.00 0.00 39.62 3.86
3024 3154 2.449464 CTGATGCCAAAATGGTCAGGA 58.551 47.619 8.43 0.00 40.46 3.86
3025 3155 2.165030 CTGATGCCAAAATGGTCAGGAC 59.835 50.000 8.43 0.00 40.46 3.85
3026 3156 2.225091 TGATGCCAAAATGGTCAGGACT 60.225 45.455 0.00 0.00 40.46 3.85
3027 3157 2.380064 TGCCAAAATGGTCAGGACTT 57.620 45.000 0.00 0.00 40.46 3.01
3028 3158 3.517296 TGCCAAAATGGTCAGGACTTA 57.483 42.857 0.00 0.00 40.46 2.24
3029 3159 3.420893 TGCCAAAATGGTCAGGACTTAG 58.579 45.455 0.00 0.00 40.46 2.18
3030 3160 2.164422 GCCAAAATGGTCAGGACTTAGC 59.836 50.000 0.00 0.00 40.46 3.09
3032 3162 3.420893 CAAAATGGTCAGGACTTAGCCA 58.579 45.455 0.00 0.00 0.00 4.75
3033 3163 3.356529 AAATGGTCAGGACTTAGCCAG 57.643 47.619 0.00 0.00 32.28 4.85
3034 3164 1.958288 ATGGTCAGGACTTAGCCAGT 58.042 50.000 0.00 0.00 39.07 4.00
3035 3165 2.615986 TGGTCAGGACTTAGCCAGTA 57.384 50.000 0.00 0.00 35.01 2.74
3037 3167 2.225293 TGGTCAGGACTTAGCCAGTAGT 60.225 50.000 0.00 0.00 35.01 2.73
3038 3168 2.166664 GGTCAGGACTTAGCCAGTAGTG 59.833 54.545 0.00 0.00 35.01 2.74
3039 3169 1.825474 TCAGGACTTAGCCAGTAGTGC 59.175 52.381 0.00 0.00 35.01 4.40
3040 3170 1.550524 CAGGACTTAGCCAGTAGTGCA 59.449 52.381 0.00 0.00 35.01 4.57
3041 3171 1.827969 AGGACTTAGCCAGTAGTGCAG 59.172 52.381 0.00 0.00 35.01 4.41
3042 3172 1.646189 GACTTAGCCAGTAGTGCAGC 58.354 55.000 0.00 0.00 35.01 5.25
3043 3173 1.205893 GACTTAGCCAGTAGTGCAGCT 59.794 52.381 6.56 6.56 35.01 4.24
3045 3480 2.005451 CTTAGCCAGTAGTGCAGCTTG 58.995 52.381 6.63 0.00 36.79 4.01
3047 3482 0.604780 AGCCAGTAGTGCAGCTTGTG 60.605 55.000 0.00 0.00 29.27 3.33
3050 3485 1.543208 CCAGTAGTGCAGCTTGTGGAA 60.543 52.381 0.00 0.00 33.12 3.53
3063 3498 2.496341 TGGAAGCGCCAGATCGAG 59.504 61.111 2.29 0.00 43.33 4.04
3064 3499 2.052104 TGGAAGCGCCAGATCGAGA 61.052 57.895 2.29 0.00 43.33 4.04
3066 3501 0.873743 GGAAGCGCCAGATCGAGAAG 60.874 60.000 2.29 0.00 36.34 2.85
3067 3502 0.873743 GAAGCGCCAGATCGAGAAGG 60.874 60.000 2.29 0.00 0.00 3.46
3074 3509 1.202510 CCAGATCGAGAAGGGAGCTTG 60.203 57.143 0.00 0.00 0.00 4.01
3075 3510 1.480137 CAGATCGAGAAGGGAGCTTGT 59.520 52.381 0.00 0.00 0.00 3.16
3076 3511 1.480137 AGATCGAGAAGGGAGCTTGTG 59.520 52.381 0.00 0.00 0.00 3.33
3079 3514 0.390472 CGAGAAGGGAGCTTGTGGAC 60.390 60.000 0.00 0.00 0.00 4.02
3081 3516 1.280421 GAGAAGGGAGCTTGTGGACAT 59.720 52.381 0.00 0.00 0.00 3.06
3082 3517 1.280421 AGAAGGGAGCTTGTGGACATC 59.720 52.381 0.00 0.00 0.00 3.06
3083 3518 1.280421 GAAGGGAGCTTGTGGACATCT 59.720 52.381 0.00 0.00 0.00 2.90
3085 3520 1.834263 AGGGAGCTTGTGGACATCTAC 59.166 52.381 0.00 0.00 0.00 2.59
3086 3521 1.834263 GGGAGCTTGTGGACATCTACT 59.166 52.381 0.00 0.00 0.00 2.57
3087 3522 2.237392 GGGAGCTTGTGGACATCTACTT 59.763 50.000 0.00 0.00 0.00 2.24
3088 3523 3.307762 GGGAGCTTGTGGACATCTACTTT 60.308 47.826 0.00 0.00 0.00 2.66
3089 3524 3.686726 GGAGCTTGTGGACATCTACTTTG 59.313 47.826 0.00 0.00 0.00 2.77
3090 3525 3.679389 AGCTTGTGGACATCTACTTTGG 58.321 45.455 0.00 0.00 0.00 3.28
3091 3526 3.327757 AGCTTGTGGACATCTACTTTGGA 59.672 43.478 0.00 0.00 0.00 3.53
3092 3527 4.072131 GCTTGTGGACATCTACTTTGGAA 58.928 43.478 0.00 0.00 0.00 3.53
3093 3528 4.154918 GCTTGTGGACATCTACTTTGGAAG 59.845 45.833 0.00 0.00 0.00 3.46
3094 3529 4.974645 TGTGGACATCTACTTTGGAAGT 57.025 40.909 0.00 0.00 45.40 3.01
3095 3530 4.894784 TGTGGACATCTACTTTGGAAGTC 58.105 43.478 0.00 0.00 41.77 3.01
3097 3532 3.576982 TGGACATCTACTTTGGAAGTCGT 59.423 43.478 0.00 0.00 41.77 4.34
3100 3535 6.161381 GGACATCTACTTTGGAAGTCGTTTA 58.839 40.000 0.00 0.00 41.77 2.01
3101 3536 6.647895 GGACATCTACTTTGGAAGTCGTTTAA 59.352 38.462 0.00 0.00 41.77 1.52
3103 3538 6.145048 ACATCTACTTTGGAAGTCGTTTAACG 59.855 38.462 11.60 11.60 41.77 3.18
3104 3539 5.591099 TCTACTTTGGAAGTCGTTTAACGT 58.409 37.500 17.16 0.00 43.14 3.99
3105 3540 4.525411 ACTTTGGAAGTCGTTTAACGTG 57.475 40.909 17.16 0.00 43.14 4.49
3106 3541 4.183101 ACTTTGGAAGTCGTTTAACGTGA 58.817 39.130 17.16 0.00 43.14 4.35
3108 3543 2.472816 TGGAAGTCGTTTAACGTGACC 58.527 47.619 17.16 15.31 43.14 4.02
3109 3544 1.794701 GGAAGTCGTTTAACGTGACCC 59.205 52.381 17.16 10.76 43.14 4.46
3112 4284 2.747436 AGTCGTTTAACGTGACCCTTC 58.253 47.619 17.16 0.46 43.14 3.46
3115 4287 4.037923 AGTCGTTTAACGTGACCCTTCTTA 59.962 41.667 17.16 0.00 43.14 2.10
3145 4317 9.620660 AAATTAAAACTATGACGAATTCGCTTT 57.379 25.926 27.03 13.98 44.43 3.51
3146 4318 8.601243 ATTAAAACTATGACGAATTCGCTTTG 57.399 30.769 27.03 18.36 44.43 2.77
3147 4319 5.607119 AAACTATGACGAATTCGCTTTGT 57.393 34.783 27.03 18.88 44.43 2.83
3148 4320 4.842139 ACTATGACGAATTCGCTTTGTC 57.158 40.909 27.03 16.72 45.20 3.18
3149 4321 3.617263 ACTATGACGAATTCGCTTTGTCC 59.383 43.478 27.03 8.58 44.62 4.02
3150 4322 2.163818 TGACGAATTCGCTTTGTCCT 57.836 45.000 27.03 5.36 44.62 3.85
3152 4324 1.798813 GACGAATTCGCTTTGTCCTGT 59.201 47.619 27.03 3.80 40.92 4.00
3153 4325 1.798813 ACGAATTCGCTTTGTCCTGTC 59.201 47.619 27.03 0.00 44.43 3.51
3154 4326 2.069273 CGAATTCGCTTTGTCCTGTCT 58.931 47.619 15.93 0.00 0.00 3.41
3155 4327 2.480419 CGAATTCGCTTTGTCCTGTCTT 59.520 45.455 15.93 0.00 0.00 3.01
3156 4328 3.058914 CGAATTCGCTTTGTCCTGTCTTT 60.059 43.478 15.93 0.00 0.00 2.52
3157 4329 3.904136 ATTCGCTTTGTCCTGTCTTTG 57.096 42.857 0.00 0.00 0.00 2.77
3158 4330 0.944386 TCGCTTTGTCCTGTCTTTGC 59.056 50.000 0.00 0.00 0.00 3.68
3159 4331 0.662619 CGCTTTGTCCTGTCTTTGCA 59.337 50.000 0.00 0.00 0.00 4.08
3160 4332 1.065401 CGCTTTGTCCTGTCTTTGCAA 59.935 47.619 0.00 0.00 0.00 4.08
3161 4333 2.735823 GCTTTGTCCTGTCTTTGCAAG 58.264 47.619 0.00 0.00 0.00 4.01
3162 4334 2.735823 CTTTGTCCTGTCTTTGCAAGC 58.264 47.619 0.00 0.00 0.00 4.01
3163 4335 2.057137 TTGTCCTGTCTTTGCAAGCT 57.943 45.000 0.00 0.00 0.00 3.74
3165 4337 2.771089 TGTCCTGTCTTTGCAAGCTAG 58.229 47.619 0.00 0.00 0.00 3.42
3166 4338 1.466558 GTCCTGTCTTTGCAAGCTAGC 59.533 52.381 6.62 6.62 0.00 3.42
3168 4340 2.567169 TCCTGTCTTTGCAAGCTAGCTA 59.433 45.455 19.70 0.00 34.99 3.32
3169 4341 2.935201 CCTGTCTTTGCAAGCTAGCTAG 59.065 50.000 19.70 16.84 34.99 3.42
3170 4342 3.594134 CTGTCTTTGCAAGCTAGCTAGT 58.406 45.455 19.70 0.00 34.99 2.57
3171 4343 3.589988 TGTCTTTGCAAGCTAGCTAGTC 58.410 45.455 19.70 13.74 34.99 2.59
3172 4344 2.933260 GTCTTTGCAAGCTAGCTAGTCC 59.067 50.000 19.70 7.25 34.99 3.85
3173 4345 2.093447 TCTTTGCAAGCTAGCTAGTCCC 60.093 50.000 19.70 5.72 34.99 4.46
3174 4346 1.275666 TTGCAAGCTAGCTAGTCCCA 58.724 50.000 19.70 8.04 34.99 4.37
3175 4347 0.537188 TGCAAGCTAGCTAGTCCCAC 59.463 55.000 19.70 8.88 34.99 4.61
3176 4348 0.537188 GCAAGCTAGCTAGTCCCACA 59.463 55.000 19.70 0.00 0.00 4.17
3177 4349 1.472376 GCAAGCTAGCTAGTCCCACAG 60.472 57.143 19.70 6.82 0.00 3.66
3179 4351 0.336737 AGCTAGCTAGTCCCACAGGT 59.663 55.000 17.69 0.00 0.00 4.00
3181 4353 1.960471 GCTAGCTAGTCCCACAGGTGA 60.960 57.143 21.62 0.00 0.00 4.02
3188 6454 2.034532 CCCACAGGTGATGCTGCA 59.965 61.111 4.13 4.13 0.00 4.41
3190 6456 2.697761 CCACAGGTGATGCTGCAGC 61.698 63.158 31.89 31.89 42.50 5.25
3192 6458 0.392060 CACAGGTGATGCTGCAGCTA 60.392 55.000 36.61 24.05 44.12 3.32
3196 6462 0.105593 GGTGATGCTGCAGCTAGCTA 59.894 55.000 36.61 18.93 45.94 3.32
3198 6464 1.117994 TGATGCTGCAGCTAGCTACT 58.882 50.000 36.61 14.06 45.94 2.57
3204 6470 0.394488 TGCAGCTAGCTACTCCGTCT 60.394 55.000 18.86 0.00 45.94 4.18
3205 6471 0.030101 GCAGCTAGCTACTCCGTCTG 59.970 60.000 18.86 3.51 41.15 3.51
3207 6473 1.332375 CAGCTAGCTACTCCGTCTGTC 59.668 57.143 18.86 0.00 0.00 3.51
3208 6474 0.664224 GCTAGCTACTCCGTCTGTCC 59.336 60.000 7.70 0.00 0.00 4.02
3209 6475 1.310904 CTAGCTACTCCGTCTGTCCC 58.689 60.000 0.00 0.00 0.00 4.46
3210 6476 0.622136 TAGCTACTCCGTCTGTCCCA 59.378 55.000 0.00 0.00 0.00 4.37
3211 6477 0.033011 AGCTACTCCGTCTGTCCCAT 60.033 55.000 0.00 0.00 0.00 4.00
3213 6479 2.029623 GCTACTCCGTCTGTCCCATAA 58.970 52.381 0.00 0.00 0.00 1.90
3214 6480 2.628657 GCTACTCCGTCTGTCCCATAAT 59.371 50.000 0.00 0.00 0.00 1.28
3216 6482 4.463186 GCTACTCCGTCTGTCCCATAATAT 59.537 45.833 0.00 0.00 0.00 1.28
3219 6485 6.591750 ACTCCGTCTGTCCCATAATATAAG 57.408 41.667 0.00 0.00 0.00 1.73
3223 6489 5.096169 CGTCTGTCCCATAATATAAGAGCG 58.904 45.833 0.00 0.00 0.00 5.03
3224 6490 5.335740 CGTCTGTCCCATAATATAAGAGCGT 60.336 44.000 0.00 0.00 0.00 5.07
3225 6491 6.456501 GTCTGTCCCATAATATAAGAGCGTT 58.543 40.000 0.00 0.00 0.00 4.84
3226 6492 6.929606 GTCTGTCCCATAATATAAGAGCGTTT 59.070 38.462 0.00 0.00 0.00 3.60
3227 6493 7.441458 GTCTGTCCCATAATATAAGAGCGTTTT 59.559 37.037 0.00 0.00 0.00 2.43
3228 6494 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 149 7.516198 AAGCTTCAATAGTTCATGTGAAAGT 57.484 32.000 0.00 0.00 35.58 2.66
205 214 9.764363 TCGTTCATATGAAAGCTTCAACTATAT 57.236 29.630 22.09 0.00 43.95 0.86
242 252 2.867624 ACAAGACACCATGCACTGAAT 58.132 42.857 0.00 0.00 0.00 2.57
277 287 2.448926 TCGAAAGATTCAACCAGCGA 57.551 45.000 0.00 0.00 33.31 4.93
494 515 2.747855 GCTGCAGGTTCCTTCCGG 60.748 66.667 17.12 0.00 0.00 5.14
581 602 3.242867 TCCTTCAGATATCTCCGCCATT 58.757 45.455 1.03 0.00 0.00 3.16
582 603 2.830923 CTCCTTCAGATATCTCCGCCAT 59.169 50.000 1.03 0.00 0.00 4.40
589 610 5.459536 CCTCCTCTTCCTCCTTCAGATATCT 60.460 48.000 0.00 0.00 0.00 1.98
592 620 3.116939 CCCTCCTCTTCCTCCTTCAGATA 60.117 52.174 0.00 0.00 0.00 1.98
649 680 5.108752 TCCCCTTCTTCCTCCTAAATTCTT 58.891 41.667 0.00 0.00 0.00 2.52
708 739 3.044894 CCTGCCTTATCTTCTTCCTCCT 58.955 50.000 0.00 0.00 0.00 3.69
744 775 4.203076 GGCCATCGTACGCCTCGT 62.203 66.667 11.24 0.00 42.21 4.18
866 897 6.414987 GTGCAAGTTTTCACAGATACAACTTC 59.585 38.462 0.00 0.00 35.89 3.01
947 978 2.434702 GGTGGATTAATCCCTCTCGTGT 59.565 50.000 27.97 0.00 46.59 4.49
949 980 1.687123 CGGTGGATTAATCCCTCTCGT 59.313 52.381 27.97 0.00 46.59 4.18
955 986 1.409661 AGCCAACGGTGGATTAATCCC 60.410 52.381 27.49 19.51 42.34 3.85
988 1019 0.179166 GAAATCATGGCTTGCGCGAA 60.179 50.000 12.10 0.00 36.88 4.70
990 1021 1.587088 GGAAATCATGGCTTGCGCG 60.587 57.895 0.00 0.00 36.88 6.86
992 1023 1.321805 TGGGGAAATCATGGCTTGCG 61.322 55.000 0.00 0.00 0.00 4.85
1010 1041 1.469251 CGTACGGTCTGGTGGAGAATG 60.469 57.143 7.57 0.00 30.26 2.67
1026 1057 1.656569 GGCTGCGGATCGTACGTAC 60.657 63.158 15.90 15.90 0.00 3.67
1027 1058 2.717485 GGCTGCGGATCGTACGTA 59.283 61.111 16.05 2.34 0.00 3.57
1028 1059 4.547905 CGGCTGCGGATCGTACGT 62.548 66.667 16.05 2.33 0.00 3.57
1048 1079 1.644509 AGGGTTTGGGCCTGAATTTC 58.355 50.000 4.53 0.00 0.00 2.17
1049 1080 2.536066 GTAGGGTTTGGGCCTGAATTT 58.464 47.619 4.53 0.00 0.00 1.82
1050 1081 1.615919 CGTAGGGTTTGGGCCTGAATT 60.616 52.381 4.53 0.00 0.00 2.17
1051 1082 0.034477 CGTAGGGTTTGGGCCTGAAT 60.034 55.000 4.53 0.00 0.00 2.57
1052 1083 1.128809 TCGTAGGGTTTGGGCCTGAA 61.129 55.000 4.53 0.00 0.00 3.02
1053 1084 0.912487 ATCGTAGGGTTTGGGCCTGA 60.912 55.000 4.53 0.00 0.00 3.86
1054 1085 0.463833 GATCGTAGGGTTTGGGCCTG 60.464 60.000 4.53 0.00 0.00 4.85
1055 1086 1.632965 GGATCGTAGGGTTTGGGCCT 61.633 60.000 4.53 0.00 0.00 5.19
1056 1087 1.153025 GGATCGTAGGGTTTGGGCC 60.153 63.158 0.00 0.00 0.00 5.80
1057 1088 1.523032 CGGATCGTAGGGTTTGGGC 60.523 63.158 0.00 0.00 0.00 5.36
1058 1089 1.523032 GCGGATCGTAGGGTTTGGG 60.523 63.158 0.00 0.00 0.00 4.12
1059 1090 1.523032 GGCGGATCGTAGGGTTTGG 60.523 63.158 0.00 0.00 0.00 3.28
1075 1106 3.799755 GTTCACCATGGCGACGGC 61.800 66.667 13.04 15.43 38.90 5.68
1080 1111 3.124921 GTCCCGTTCACCATGGCG 61.125 66.667 13.04 7.12 0.00 5.69
1081 1112 3.124921 CGTCCCGTTCACCATGGC 61.125 66.667 13.04 0.00 0.00 4.40
1123 1167 2.490685 GAAGAGCTCGTCCGGGAC 59.509 66.667 17.78 17.38 0.00 4.46
1277 1336 1.376683 GCGGTGTACTCATTGCCCA 60.377 57.895 0.00 0.00 0.00 5.36
1358 1417 5.445673 CGAGTGTAGTTGTAGTCTTCGTAGG 60.446 48.000 0.00 0.00 0.00 3.18
1359 1418 5.549159 CGAGTGTAGTTGTAGTCTTCGTAG 58.451 45.833 0.00 0.00 0.00 3.51
1361 1420 3.364764 GCGAGTGTAGTTGTAGTCTTCGT 60.365 47.826 0.00 0.00 0.00 3.85
1378 1437 0.677842 AAGGTGAAGTTACGGCGAGT 59.322 50.000 16.62 0.00 0.00 4.18
1439 1498 0.878086 GCAGAGGTAGAAGCGATGGC 60.878 60.000 0.00 0.00 40.37 4.40
1443 1502 0.246635 GGTTGCAGAGGTAGAAGCGA 59.753 55.000 0.00 0.00 0.00 4.93
1506 1565 1.743995 GTACAGGGCGGCGACATTT 60.744 57.895 17.61 1.92 0.00 2.32
1558 1617 1.733402 TTGTTTGGGCGCTTCCAGTG 61.733 55.000 7.64 0.00 38.17 3.66
1578 1637 2.546195 AGTAGACAACATCGTCGCTC 57.454 50.000 0.00 0.00 40.98 5.03
1614 1679 3.408634 CCCGATACACCTCTGTTTTTGT 58.591 45.455 0.00 0.00 0.00 2.83
1615 1680 2.161609 GCCCGATACACCTCTGTTTTTG 59.838 50.000 0.00 0.00 0.00 2.44
1621 1686 1.227380 GCAGCCCGATACACCTCTG 60.227 63.158 0.00 0.00 0.00 3.35
1755 1850 6.691388 GTGTATCAAAAATTACGATCTTGCCC 59.309 38.462 0.00 0.00 0.00 5.36
1891 1993 0.249405 CGCAACACCCATGCTTTTGT 60.249 50.000 0.00 0.00 41.64 2.83
1910 2012 1.861982 TACCTCTGCCTTGTAGTCCC 58.138 55.000 0.00 0.00 0.00 4.46
1973 2075 8.598202 ATCATATCTCAGCATCTGATAACTCT 57.402 34.615 0.00 0.00 39.92 3.24
2085 2187 1.334869 CCCTTGCTGTCACAGTGAAAC 59.665 52.381 4.32 0.00 33.43 2.78
2121 2223 2.959516 TCAATGTAGCTCCACACGAAG 58.040 47.619 0.00 0.00 0.00 3.79
2127 2229 3.629398 CCTTTGGATCAATGTAGCTCCAC 59.371 47.826 0.00 0.00 37.51 4.02
2208 2310 1.154093 CAGCTTCACATGCTTGCCG 60.154 57.895 0.00 0.00 38.92 5.69
2216 2318 2.033141 AGCGTGGCAGCTTCACAT 59.967 55.556 14.89 2.91 46.80 3.21
2232 2334 2.840651 TCCCTAGAGCCCTTGAAGAAAG 59.159 50.000 0.00 0.00 35.47 2.62
2271 2382 2.030946 GCTCACAGCGATAACCATGAAC 59.969 50.000 0.00 0.00 0.00 3.18
2292 2403 7.896383 TTATTTCCCATATTTCCTTCACAGG 57.104 36.000 0.00 0.00 42.50 4.00
2323 2434 1.447838 CCAACCTCGGTCCGACATG 60.448 63.158 10.71 9.34 0.00 3.21
2327 2438 1.975407 GAGTCCAACCTCGGTCCGA 60.975 63.158 14.54 14.54 0.00 4.55
2350 2461 9.986157 AATGGATAGACGGGTAAAGTAGATATA 57.014 33.333 0.00 0.00 0.00 0.86
2351 2462 8.896722 AATGGATAGACGGGTAAAGTAGATAT 57.103 34.615 0.00 0.00 0.00 1.63
2401 2512 5.997129 AGGAAAAGTTTGGCATTAACATTGG 59.003 36.000 4.98 0.00 0.00 3.16
2412 2523 7.215719 ACAGAACTATAAGGAAAAGTTTGGC 57.784 36.000 0.00 0.00 33.72 4.52
2420 2531 7.338449 GCCACCAATAACAGAACTATAAGGAAA 59.662 37.037 0.00 0.00 0.00 3.13
2421 2532 6.826741 GCCACCAATAACAGAACTATAAGGAA 59.173 38.462 0.00 0.00 0.00 3.36
2424 2535 6.238103 CGTGCCACCAATAACAGAACTATAAG 60.238 42.308 0.00 0.00 0.00 1.73
2425 2536 5.583061 CGTGCCACCAATAACAGAACTATAA 59.417 40.000 0.00 0.00 0.00 0.98
2426 2537 5.113383 CGTGCCACCAATAACAGAACTATA 58.887 41.667 0.00 0.00 0.00 1.31
2430 2541 1.401018 GCGTGCCACCAATAACAGAAC 60.401 52.381 0.00 0.00 0.00 3.01
2434 2556 2.186532 TAAGCGTGCCACCAATAACA 57.813 45.000 0.00 0.00 0.00 2.41
2435 2557 2.486592 AGTTAAGCGTGCCACCAATAAC 59.513 45.455 0.00 0.00 0.00 1.89
2448 2570 2.135139 TCTGTTGTCAGCAGTTAAGCG 58.865 47.619 15.38 0.00 41.10 4.68
2452 2574 2.813754 GGCATTCTGTTGTCAGCAGTTA 59.186 45.455 15.38 6.64 41.10 2.24
2467 2589 2.108952 AGGGATAAGACATGGGGCATTC 59.891 50.000 0.00 0.00 0.00 2.67
2471 2593 0.035458 CGAGGGATAAGACATGGGGC 59.965 60.000 0.00 0.00 0.00 5.80
2473 2595 1.000163 CGACGAGGGATAAGACATGGG 60.000 57.143 0.00 0.00 0.00 4.00
2475 2597 3.253432 TGATCGACGAGGGATAAGACATG 59.747 47.826 3.01 0.00 0.00 3.21
2478 2600 3.066342 TGTTGATCGACGAGGGATAAGAC 59.934 47.826 8.59 0.00 0.00 3.01
2485 2610 1.067846 TGTCTTGTTGATCGACGAGGG 60.068 52.381 24.63 6.83 32.83 4.30
2488 2613 2.095415 ACGATGTCTTGTTGATCGACGA 60.095 45.455 8.59 0.00 41.18 4.20
2489 2614 2.251040 ACGATGTCTTGTTGATCGACG 58.749 47.619 8.59 0.00 41.18 5.12
2515 2640 9.922305 CGGTCTATTCTGATAATTTTCTGAAAC 57.078 33.333 17.51 12.81 37.20 2.78
2519 2644 7.095439 GCTCCGGTCTATTCTGATAATTTTCTG 60.095 40.741 0.00 0.00 0.00 3.02
2520 2645 6.931840 GCTCCGGTCTATTCTGATAATTTTCT 59.068 38.462 0.00 0.00 0.00 2.52
2521 2646 6.931840 AGCTCCGGTCTATTCTGATAATTTTC 59.068 38.462 0.00 0.00 0.00 2.29
2535 2663 2.367567 ACTGAAAACAAGCTCCGGTCTA 59.632 45.455 0.00 0.00 0.00 2.59
2537 2665 1.594331 ACTGAAAACAAGCTCCGGTC 58.406 50.000 0.00 0.00 0.00 4.79
2538 2666 2.052782 AACTGAAAACAAGCTCCGGT 57.947 45.000 0.00 0.00 0.00 5.28
2542 2670 7.478520 TCACTACTTAACTGAAAACAAGCTC 57.521 36.000 0.00 0.00 0.00 4.09
2548 2676 8.890718 ACCTTCTTTCACTACTTAACTGAAAAC 58.109 33.333 0.00 0.00 34.36 2.43
2550 2678 8.483758 AGACCTTCTTTCACTACTTAACTGAAA 58.516 33.333 0.00 0.00 33.80 2.69
2555 2683 8.976471 GTTACAGACCTTCTTTCACTACTTAAC 58.024 37.037 0.00 0.00 0.00 2.01
2557 2685 8.241497 TGTTACAGACCTTCTTTCACTACTTA 57.759 34.615 0.00 0.00 0.00 2.24
2571 2701 9.063615 CACCTAAACTTTTTATGTTACAGACCT 57.936 33.333 0.00 0.00 0.00 3.85
2586 2716 9.777297 TCTAAAATACGGTAACACCTAAACTTT 57.223 29.630 0.00 0.00 35.66 2.66
2588 2718 8.806146 TCTCTAAAATACGGTAACACCTAAACT 58.194 33.333 0.00 0.00 35.66 2.66
2589 2719 8.986477 TCTCTAAAATACGGTAACACCTAAAC 57.014 34.615 0.00 0.00 35.66 2.01
2590 2720 9.023962 TCTCTCTAAAATACGGTAACACCTAAA 57.976 33.333 0.00 0.00 35.66 1.85
2591 2721 8.579850 TCTCTCTAAAATACGGTAACACCTAA 57.420 34.615 0.00 0.00 35.66 2.69
2592 2722 8.757982 ATCTCTCTAAAATACGGTAACACCTA 57.242 34.615 0.00 0.00 35.66 3.08
2593 2723 7.657023 ATCTCTCTAAAATACGGTAACACCT 57.343 36.000 0.00 0.00 35.66 4.00
2650 2780 2.037251 TCTCTCAAACACCCTTTCCTCG 59.963 50.000 0.00 0.00 0.00 4.63
2658 2788 4.899502 TCAGAAATCTCTCTCAAACACCC 58.100 43.478 0.00 0.00 0.00 4.61
2666 2796 5.911752 TGTAAGCCATCAGAAATCTCTCTC 58.088 41.667 0.00 0.00 0.00 3.20
2677 2807 4.597404 TGCTCTATCTGTAAGCCATCAG 57.403 45.455 0.00 0.00 35.12 2.90
2682 2812 3.129871 CTGCTTGCTCTATCTGTAAGCC 58.870 50.000 12.41 0.00 42.17 4.35
2690 2820 2.102925 AGCTTCCTCTGCTTGCTCTATC 59.897 50.000 0.00 0.00 37.52 2.08
2694 2824 0.036577 TCAGCTTCCTCTGCTTGCTC 60.037 55.000 0.00 0.00 38.92 4.26
2695 2825 0.321475 GTCAGCTTCCTCTGCTTGCT 60.321 55.000 0.00 0.00 38.92 3.91
2696 2826 0.321475 AGTCAGCTTCCTCTGCTTGC 60.321 55.000 0.00 0.00 38.92 4.01
2697 2827 1.440708 CAGTCAGCTTCCTCTGCTTG 58.559 55.000 0.00 0.00 38.92 4.01
2699 2829 1.296068 GCAGTCAGCTTCCTCTGCT 59.704 57.895 16.69 0.00 46.35 4.24
2700 2830 3.887783 GCAGTCAGCTTCCTCTGC 58.112 61.111 11.51 11.51 44.50 4.26
2701 2831 2.975732 TATGCAGTCAGCTTCCTCTG 57.024 50.000 0.00 0.00 45.94 3.35
2703 2833 5.144692 TCATATATGCAGTCAGCTTCCTC 57.855 43.478 7.92 0.00 45.94 3.71
2704 2834 5.247792 TGATCATATATGCAGTCAGCTTCCT 59.752 40.000 7.92 0.00 45.94 3.36
2705 2835 5.485620 TGATCATATATGCAGTCAGCTTCC 58.514 41.667 7.92 0.00 45.94 3.46
2706 2836 8.890124 ATATGATCATATATGCAGTCAGCTTC 57.110 34.615 23.85 0.00 36.86 3.86
2707 2837 9.682465 AAATATGATCATATATGCAGTCAGCTT 57.318 29.630 25.03 10.72 37.48 3.74
2753 2883 6.906157 AATATTGTCCCTATCATGCAAAGG 57.094 37.500 0.00 0.00 0.00 3.11
2754 2884 6.643770 GCAAATATTGTCCCTATCATGCAAAG 59.356 38.462 0.00 0.00 0.00 2.77
2757 2887 5.242171 CAGCAAATATTGTCCCTATCATGCA 59.758 40.000 0.00 0.00 32.76 3.96
2758 2888 5.474532 TCAGCAAATATTGTCCCTATCATGC 59.525 40.000 0.00 0.00 0.00 4.06
2759 2889 7.514784 TTCAGCAAATATTGTCCCTATCATG 57.485 36.000 0.00 0.00 0.00 3.07
2760 2890 8.716674 AATTCAGCAAATATTGTCCCTATCAT 57.283 30.769 0.00 0.00 0.00 2.45
2761 2891 8.537728 AAATTCAGCAAATATTGTCCCTATCA 57.462 30.769 0.00 0.00 0.00 2.15
2762 2892 9.822185 AAAAATTCAGCAAATATTGTCCCTATC 57.178 29.630 0.00 0.00 0.00 2.08
2765 2895 9.657419 CTTAAAAATTCAGCAAATATTGTCCCT 57.343 29.630 0.00 0.00 0.00 4.20
2766 2896 9.651913 TCTTAAAAATTCAGCAAATATTGTCCC 57.348 29.630 0.00 0.00 0.00 4.46
2774 2904 9.252962 CAGACAACTCTTAAAAATTCAGCAAAT 57.747 29.630 0.00 0.00 0.00 2.32
2775 2905 7.706179 CCAGACAACTCTTAAAAATTCAGCAAA 59.294 33.333 0.00 0.00 0.00 3.68
2776 2906 7.147915 ACCAGACAACTCTTAAAAATTCAGCAA 60.148 33.333 0.00 0.00 0.00 3.91
2777 2907 6.321181 ACCAGACAACTCTTAAAAATTCAGCA 59.679 34.615 0.00 0.00 0.00 4.41
2778 2908 6.739112 ACCAGACAACTCTTAAAAATTCAGC 58.261 36.000 0.00 0.00 0.00 4.26
2779 2909 9.237846 GAAACCAGACAACTCTTAAAAATTCAG 57.762 33.333 0.00 0.00 0.00 3.02
2780 2910 7.913297 CGAAACCAGACAACTCTTAAAAATTCA 59.087 33.333 0.00 0.00 0.00 2.57
2781 2911 8.126700 TCGAAACCAGACAACTCTTAAAAATTC 58.873 33.333 0.00 0.00 0.00 2.17
2782 2912 7.992008 TCGAAACCAGACAACTCTTAAAAATT 58.008 30.769 0.00 0.00 0.00 1.82
2783 2913 7.255139 CCTCGAAACCAGACAACTCTTAAAAAT 60.255 37.037 0.00 0.00 0.00 1.82
2784 2914 6.037830 CCTCGAAACCAGACAACTCTTAAAAA 59.962 38.462 0.00 0.00 0.00 1.94
2785 2915 5.526111 CCTCGAAACCAGACAACTCTTAAAA 59.474 40.000 0.00 0.00 0.00 1.52
2786 2916 5.054477 CCTCGAAACCAGACAACTCTTAAA 58.946 41.667 0.00 0.00 0.00 1.52
2787 2917 4.502604 CCCTCGAAACCAGACAACTCTTAA 60.503 45.833 0.00 0.00 0.00 1.85
2788 2918 3.006537 CCCTCGAAACCAGACAACTCTTA 59.993 47.826 0.00 0.00 0.00 2.10
2789 2919 2.224305 CCCTCGAAACCAGACAACTCTT 60.224 50.000 0.00 0.00 0.00 2.85
2790 2920 1.344763 CCCTCGAAACCAGACAACTCT 59.655 52.381 0.00 0.00 0.00 3.24
2791 2921 1.070289 ACCCTCGAAACCAGACAACTC 59.930 52.381 0.00 0.00 0.00 3.01
2792 2922 1.129058 ACCCTCGAAACCAGACAACT 58.871 50.000 0.00 0.00 0.00 3.16
2793 2923 1.202604 TCACCCTCGAAACCAGACAAC 60.203 52.381 0.00 0.00 0.00 3.32
2794 2924 1.124780 TCACCCTCGAAACCAGACAA 58.875 50.000 0.00 0.00 0.00 3.18
2795 2925 1.124780 TTCACCCTCGAAACCAGACA 58.875 50.000 0.00 0.00 0.00 3.41
2796 2926 2.474410 ATTCACCCTCGAAACCAGAC 57.526 50.000 0.00 0.00 0.00 3.51
2797 2927 2.637872 AGAATTCACCCTCGAAACCAGA 59.362 45.455 8.44 0.00 0.00 3.86
2798 2928 2.744202 CAGAATTCACCCTCGAAACCAG 59.256 50.000 8.44 0.00 0.00 4.00
2799 2929 2.370519 TCAGAATTCACCCTCGAAACCA 59.629 45.455 8.44 0.00 0.00 3.67
2800 2930 3.053831 TCAGAATTCACCCTCGAAACC 57.946 47.619 8.44 0.00 0.00 3.27
2801 2931 5.412904 AGAAATCAGAATTCACCCTCGAAAC 59.587 40.000 8.44 0.00 0.00 2.78
2802 2932 5.412594 CAGAAATCAGAATTCACCCTCGAAA 59.587 40.000 8.44 0.00 0.00 3.46
2803 2933 4.937620 CAGAAATCAGAATTCACCCTCGAA 59.062 41.667 8.44 0.00 0.00 3.71
2804 2934 4.222810 TCAGAAATCAGAATTCACCCTCGA 59.777 41.667 8.44 0.00 0.00 4.04
2805 2935 4.507710 TCAGAAATCAGAATTCACCCTCG 58.492 43.478 8.44 0.00 0.00 4.63
2806 2936 8.688747 ATATTCAGAAATCAGAATTCACCCTC 57.311 34.615 8.44 0.00 34.56 4.30
2807 2937 9.566432 GTATATTCAGAAATCAGAATTCACCCT 57.434 33.333 8.44 0.00 34.56 4.34
2808 2938 9.342308 TGTATATTCAGAAATCAGAATTCACCC 57.658 33.333 8.44 0.00 34.56 4.61
2820 2950 9.681062 CCCCGGTTTATATGTATATTCAGAAAT 57.319 33.333 0.00 0.00 0.00 2.17
2821 2951 7.608761 GCCCCGGTTTATATGTATATTCAGAAA 59.391 37.037 0.00 0.00 0.00 2.52
2832 2962 2.173782 TGTGATGCCCCGGTTTATATGT 59.826 45.455 0.00 0.00 0.00 2.29
2836 2966 1.214175 TCATGTGATGCCCCGGTTTAT 59.786 47.619 0.00 0.00 0.00 1.40
2837 2967 0.621082 TCATGTGATGCCCCGGTTTA 59.379 50.000 0.00 0.00 0.00 2.01
2841 2971 1.457823 CCAATCATGTGATGCCCCGG 61.458 60.000 0.00 0.00 34.49 5.73
2842 2972 0.752743 ACCAATCATGTGATGCCCCG 60.753 55.000 0.00 0.00 34.49 5.73
2844 2974 2.624838 CCTTACCAATCATGTGATGCCC 59.375 50.000 0.00 0.00 34.49 5.36
2845 2975 3.290710 ACCTTACCAATCATGTGATGCC 58.709 45.455 0.00 0.00 34.49 4.40
2846 2976 4.989279 AACCTTACCAATCATGTGATGC 57.011 40.909 0.00 0.00 34.49 3.91
2847 2977 6.151648 AGTGAAACCTTACCAATCATGTGATG 59.848 38.462 0.00 0.00 37.80 3.07
2849 2979 5.473162 CAGTGAAACCTTACCAATCATGTGA 59.527 40.000 0.00 0.00 37.80 3.58
2850 2980 5.241506 ACAGTGAAACCTTACCAATCATGTG 59.758 40.000 0.00 0.00 37.80 3.21
2851 2981 5.385198 ACAGTGAAACCTTACCAATCATGT 58.615 37.500 0.00 0.00 37.80 3.21
2853 2983 4.695455 CGACAGTGAAACCTTACCAATCAT 59.305 41.667 0.00 0.00 37.80 2.45
2854 2984 4.062293 CGACAGTGAAACCTTACCAATCA 58.938 43.478 0.00 0.00 37.80 2.57
2855 2985 4.062991 ACGACAGTGAAACCTTACCAATC 58.937 43.478 0.00 0.00 37.80 2.67
2856 2986 4.081322 ACGACAGTGAAACCTTACCAAT 57.919 40.909 0.00 0.00 37.80 3.16
2857 2987 3.547054 ACGACAGTGAAACCTTACCAA 57.453 42.857 0.00 0.00 37.80 3.67
2859 2989 6.549912 AATTAACGACAGTGAAACCTTACC 57.450 37.500 0.00 0.00 37.80 2.85
2860 2990 8.928733 TGATAATTAACGACAGTGAAACCTTAC 58.071 33.333 0.00 0.00 37.80 2.34
2861 2991 9.146984 CTGATAATTAACGACAGTGAAACCTTA 57.853 33.333 0.00 0.00 37.80 2.69
2863 2993 7.383687 TCTGATAATTAACGACAGTGAAACCT 58.616 34.615 0.00 0.00 37.80 3.50
2864 2994 7.591006 TCTGATAATTAACGACAGTGAAACC 57.409 36.000 0.00 0.00 37.80 3.27
2868 2998 9.516314 CACTAATCTGATAATTAACGACAGTGA 57.484 33.333 0.00 0.00 0.00 3.41
2869 2999 9.302345 ACACTAATCTGATAATTAACGACAGTG 57.698 33.333 17.24 17.24 0.00 3.66
2870 3000 9.302345 CACACTAATCTGATAATTAACGACAGT 57.698 33.333 0.00 0.00 0.00 3.55
2871 3001 8.755941 CCACACTAATCTGATAATTAACGACAG 58.244 37.037 0.00 0.00 0.00 3.51
2872 3002 8.255206 ACCACACTAATCTGATAATTAACGACA 58.745 33.333 0.00 0.00 0.00 4.35
2873 3003 8.540492 CACCACACTAATCTGATAATTAACGAC 58.460 37.037 0.00 0.00 0.00 4.34
2874 3004 7.709182 CCACCACACTAATCTGATAATTAACGA 59.291 37.037 0.00 0.00 0.00 3.85
2875 3005 7.042051 CCCACCACACTAATCTGATAATTAACG 60.042 40.741 0.00 0.00 0.00 3.18
2876 3006 7.228706 CCCCACCACACTAATCTGATAATTAAC 59.771 40.741 0.00 0.00 0.00 2.01
2878 3008 6.690460 GCCCCACCACACTAATCTGATAATTA 60.690 42.308 0.00 0.00 0.00 1.40
2880 3010 4.446311 GCCCCACCACACTAATCTGATAAT 60.446 45.833 0.00 0.00 0.00 1.28
2881 3011 3.118038 GCCCCACCACACTAATCTGATAA 60.118 47.826 0.00 0.00 0.00 1.75
2883 3013 1.212935 GCCCCACCACACTAATCTGAT 59.787 52.381 0.00 0.00 0.00 2.90
2886 3016 1.064463 CATGCCCCACCACACTAATCT 60.064 52.381 0.00 0.00 0.00 2.40
2888 3018 0.033208 CCATGCCCCACCACACTAAT 60.033 55.000 0.00 0.00 0.00 1.73
2889 3019 1.382240 CCATGCCCCACCACACTAA 59.618 57.895 0.00 0.00 0.00 2.24
2891 3021 4.684134 GCCATGCCCCACCACACT 62.684 66.667 0.00 0.00 0.00 3.55
2892 3022 2.779742 TAAGCCATGCCCCACCACAC 62.780 60.000 0.00 0.00 0.00 3.82
2894 3024 0.687427 AATAAGCCATGCCCCACCAC 60.687 55.000 0.00 0.00 0.00 4.16
2895 3025 0.042431 AAATAAGCCATGCCCCACCA 59.958 50.000 0.00 0.00 0.00 4.17
2896 3026 2.080654 TAAATAAGCCATGCCCCACC 57.919 50.000 0.00 0.00 0.00 4.61
2897 3027 3.230134 TGATAAATAAGCCATGCCCCAC 58.770 45.455 0.00 0.00 0.00 4.61
2898 3028 3.139957 TCTGATAAATAAGCCATGCCCCA 59.860 43.478 0.00 0.00 0.00 4.96
2899 3029 3.766545 TCTGATAAATAAGCCATGCCCC 58.233 45.455 0.00 0.00 0.00 5.80
2901 3031 6.579666 TGAATCTGATAAATAAGCCATGCC 57.420 37.500 0.00 0.00 0.00 4.40
2902 3032 6.530534 GCATGAATCTGATAAATAAGCCATGC 59.469 38.462 0.00 0.00 43.72 4.06
2903 3033 7.599171 TGCATGAATCTGATAAATAAGCCATG 58.401 34.615 0.00 0.00 0.00 3.66
2905 3035 7.449086 TGATGCATGAATCTGATAAATAAGCCA 59.551 33.333 14.96 0.00 0.00 4.75
2906 3036 7.754027 GTGATGCATGAATCTGATAAATAAGCC 59.246 37.037 14.96 0.00 0.00 4.35
2907 3037 8.512956 AGTGATGCATGAATCTGATAAATAAGC 58.487 33.333 14.96 0.00 0.00 3.09
2910 3040 9.563748 TCAAGTGATGCATGAATCTGATAAATA 57.436 29.630 14.96 0.00 0.00 1.40
2911 3041 8.459911 TCAAGTGATGCATGAATCTGATAAAT 57.540 30.769 14.96 0.00 0.00 1.40
2912 3042 7.868906 TCAAGTGATGCATGAATCTGATAAA 57.131 32.000 14.96 0.00 0.00 1.40
2913 3043 8.349983 CAATCAAGTGATGCATGAATCTGATAA 58.650 33.333 14.96 0.00 34.49 1.75
2914 3044 7.040686 CCAATCAAGTGATGCATGAATCTGATA 60.041 37.037 14.96 0.00 34.49 2.15
2916 3046 5.067283 CCAATCAAGTGATGCATGAATCTGA 59.933 40.000 14.96 10.42 34.49 3.27
2917 3047 5.163550 ACCAATCAAGTGATGCATGAATCTG 60.164 40.000 14.96 5.25 34.49 2.90
2918 3048 4.954202 ACCAATCAAGTGATGCATGAATCT 59.046 37.500 14.96 0.00 34.49 2.40
2919 3049 5.258456 ACCAATCAAGTGATGCATGAATC 57.742 39.130 2.46 6.74 34.49 2.52
2921 3051 5.125900 CCTTACCAATCAAGTGATGCATGAA 59.874 40.000 2.46 0.00 34.49 2.57
2923 3053 4.400251 ACCTTACCAATCAAGTGATGCATG 59.600 41.667 2.46 0.00 34.49 4.06
2924 3054 4.603131 ACCTTACCAATCAAGTGATGCAT 58.397 39.130 0.00 0.00 34.49 3.96
2925 3055 4.032960 ACCTTACCAATCAAGTGATGCA 57.967 40.909 0.00 0.00 34.49 3.96
2927 3057 6.016360 TGTGAAACCTTACCAATCAAGTGATG 60.016 38.462 0.00 0.00 32.52 3.07
2928 3058 6.068010 TGTGAAACCTTACCAATCAAGTGAT 58.932 36.000 0.00 0.00 34.36 3.06
2930 3060 5.530915 TCTGTGAAACCTTACCAATCAAGTG 59.469 40.000 0.00 0.00 34.36 3.16
2931 3061 5.531287 GTCTGTGAAACCTTACCAATCAAGT 59.469 40.000 0.00 0.00 34.36 3.16
2932 3062 5.765182 AGTCTGTGAAACCTTACCAATCAAG 59.235 40.000 0.00 0.00 34.36 3.02
2936 3066 3.821033 GCAGTCTGTGAAACCTTACCAAT 59.179 43.478 0.93 0.00 34.36 3.16
2937 3067 3.118038 AGCAGTCTGTGAAACCTTACCAA 60.118 43.478 0.93 0.00 34.36 3.67
2938 3068 2.438021 AGCAGTCTGTGAAACCTTACCA 59.562 45.455 0.93 0.00 34.36 3.25
2939 3069 3.067833 GAGCAGTCTGTGAAACCTTACC 58.932 50.000 0.93 0.00 34.36 2.85
2940 3070 3.495001 GTGAGCAGTCTGTGAAACCTTAC 59.505 47.826 0.93 0.00 34.36 2.34
2941 3071 3.494398 GGTGAGCAGTCTGTGAAACCTTA 60.494 47.826 0.93 0.00 34.36 2.69
2943 3073 1.202698 GGTGAGCAGTCTGTGAAACCT 60.203 52.381 0.93 0.00 34.36 3.50
2944 3074 1.230324 GGTGAGCAGTCTGTGAAACC 58.770 55.000 0.93 1.53 34.36 3.27
2945 3075 1.953559 TGGTGAGCAGTCTGTGAAAC 58.046 50.000 0.93 0.00 37.35 2.78
2946 3076 2.682856 GTTTGGTGAGCAGTCTGTGAAA 59.317 45.455 0.93 0.00 0.00 2.69
2947 3077 2.288666 GTTTGGTGAGCAGTCTGTGAA 58.711 47.619 0.93 0.00 0.00 3.18
2948 3078 1.209261 TGTTTGGTGAGCAGTCTGTGA 59.791 47.619 0.93 0.00 0.00 3.58
2949 3079 1.667236 TGTTTGGTGAGCAGTCTGTG 58.333 50.000 0.93 0.00 0.00 3.66
2987 3117 2.746277 GCATCACCGGCGGTCTTT 60.746 61.111 31.82 14.14 31.02 2.52
2988 3118 3.706373 AGCATCACCGGCGGTCTT 61.706 61.111 31.82 17.03 31.02 3.01
2989 3119 4.457496 CAGCATCACCGGCGGTCT 62.457 66.667 31.82 20.73 31.02 3.85
2990 3120 3.740128 ATCAGCATCACCGGCGGTC 62.740 63.158 31.82 18.52 31.02 4.79
2991 3121 3.785859 ATCAGCATCACCGGCGGT 61.786 61.111 28.83 28.83 35.62 5.68
2992 3122 3.274586 CATCAGCATCACCGGCGG 61.275 66.667 27.06 27.06 36.08 6.13
2993 3123 3.945434 GCATCAGCATCACCGGCG 61.945 66.667 0.00 0.00 41.58 6.46
2994 3124 3.589881 GGCATCAGCATCACCGGC 61.590 66.667 0.00 0.00 44.61 6.13
2995 3125 1.314534 TTTGGCATCAGCATCACCGG 61.315 55.000 0.00 0.00 44.61 5.28
2996 3126 0.527113 TTTTGGCATCAGCATCACCG 59.473 50.000 0.00 0.00 44.61 4.94
2997 3127 2.546778 CATTTTGGCATCAGCATCACC 58.453 47.619 0.00 0.00 44.61 4.02
2998 3128 2.093869 ACCATTTTGGCATCAGCATCAC 60.094 45.455 0.00 0.00 42.67 3.06
2999 3129 2.166870 GACCATTTTGGCATCAGCATCA 59.833 45.455 0.00 0.00 42.67 3.07
3000 3130 2.166870 TGACCATTTTGGCATCAGCATC 59.833 45.455 0.00 0.00 42.67 3.91
3001 3131 2.167693 CTGACCATTTTGGCATCAGCAT 59.832 45.455 1.00 0.00 42.67 3.79
3003 3133 1.134907 CCTGACCATTTTGGCATCAGC 60.135 52.381 7.80 0.00 42.67 4.26
3004 3134 2.165030 GTCCTGACCATTTTGGCATCAG 59.835 50.000 6.56 6.56 42.67 2.90
3005 3135 2.170166 GTCCTGACCATTTTGGCATCA 58.830 47.619 0.00 0.00 42.67 3.07
3006 3136 2.450476 AGTCCTGACCATTTTGGCATC 58.550 47.619 0.00 0.00 42.67 3.91
3007 3137 2.610438 AGTCCTGACCATTTTGGCAT 57.390 45.000 0.00 0.00 42.67 4.40
3008 3138 2.380064 AAGTCCTGACCATTTTGGCA 57.620 45.000 0.00 0.00 42.67 4.92
3009 3139 2.164422 GCTAAGTCCTGACCATTTTGGC 59.836 50.000 0.00 0.00 42.67 4.52
3010 3140 2.755103 GGCTAAGTCCTGACCATTTTGG 59.245 50.000 0.00 0.00 45.02 3.28
3011 3141 3.420893 TGGCTAAGTCCTGACCATTTTG 58.579 45.455 0.00 0.00 0.00 2.44
3012 3142 3.074538 ACTGGCTAAGTCCTGACCATTTT 59.925 43.478 0.00 0.00 31.64 1.82
3013 3143 2.644798 ACTGGCTAAGTCCTGACCATTT 59.355 45.455 0.00 0.00 31.64 2.32
3016 3146 2.225293 ACTACTGGCTAAGTCCTGACCA 60.225 50.000 0.00 0.00 40.56 4.02
3017 3147 2.166664 CACTACTGGCTAAGTCCTGACC 59.833 54.545 0.00 0.00 40.56 4.02
3018 3148 2.417515 GCACTACTGGCTAAGTCCTGAC 60.418 54.545 0.00 0.00 40.56 3.51
3020 3150 1.550524 TGCACTACTGGCTAAGTCCTG 59.449 52.381 0.00 0.00 40.56 3.86
3022 3152 1.740718 GCTGCACTACTGGCTAAGTCC 60.741 57.143 0.00 0.00 40.56 3.85
3023 3153 1.205893 AGCTGCACTACTGGCTAAGTC 59.794 52.381 1.02 0.00 40.56 3.01
3024 3154 1.270907 AGCTGCACTACTGGCTAAGT 58.729 50.000 1.02 0.00 43.40 2.24
3025 3155 2.005451 CAAGCTGCACTACTGGCTAAG 58.995 52.381 1.02 0.00 34.40 2.18
3026 3156 1.347707 ACAAGCTGCACTACTGGCTAA 59.652 47.619 1.02 0.00 34.40 3.09
3027 3157 0.976641 ACAAGCTGCACTACTGGCTA 59.023 50.000 1.02 0.00 34.40 3.93
3028 3158 0.604780 CACAAGCTGCACTACTGGCT 60.605 55.000 1.02 0.00 36.53 4.75
3029 3159 1.580845 CCACAAGCTGCACTACTGGC 61.581 60.000 1.02 0.00 0.00 4.85
3030 3160 0.035317 TCCACAAGCTGCACTACTGG 59.965 55.000 1.02 0.00 0.00 4.00
3032 3162 2.175878 CTTCCACAAGCTGCACTACT 57.824 50.000 1.02 0.00 0.00 2.57
3042 3172 1.699656 CGATCTGGCGCTTCCACAAG 61.700 60.000 7.64 0.00 40.72 3.16
3043 3173 1.741401 CGATCTGGCGCTTCCACAA 60.741 57.895 7.64 0.00 40.72 3.33
3045 3480 1.880340 CTCGATCTGGCGCTTCCAC 60.880 63.158 7.64 0.00 40.72 4.02
3047 3482 0.873743 CTTCTCGATCTGGCGCTTCC 60.874 60.000 7.64 0.00 0.00 3.46
3050 3485 2.790791 CCCTTCTCGATCTGGCGCT 61.791 63.158 7.64 0.00 0.00 5.92
3056 3491 1.480137 CACAAGCTCCCTTCTCGATCT 59.520 52.381 0.00 0.00 0.00 2.75
3061 3496 0.687354 TGTCCACAAGCTCCCTTCTC 59.313 55.000 0.00 0.00 0.00 2.87
3063 3498 1.280421 AGATGTCCACAAGCTCCCTTC 59.720 52.381 0.00 0.00 0.00 3.46
3064 3499 1.366319 AGATGTCCACAAGCTCCCTT 58.634 50.000 0.00 0.00 0.00 3.95
3066 3501 1.834263 AGTAGATGTCCACAAGCTCCC 59.166 52.381 0.00 0.00 0.00 4.30
3067 3502 3.618690 AAGTAGATGTCCACAAGCTCC 57.381 47.619 0.00 0.00 0.00 4.70
3074 3509 3.927142 CGACTTCCAAAGTAGATGTCCAC 59.073 47.826 0.00 0.00 43.03 4.02
3075 3510 3.576982 ACGACTTCCAAAGTAGATGTCCA 59.423 43.478 6.90 0.00 43.03 4.02
3076 3511 4.189639 ACGACTTCCAAAGTAGATGTCC 57.810 45.455 6.90 0.00 43.03 4.02
3079 3514 6.145048 ACGTTAAACGACTTCCAAAGTAGATG 59.855 38.462 0.00 0.00 46.05 2.90
3081 3516 5.459762 CACGTTAAACGACTTCCAAAGTAGA 59.540 40.000 0.00 0.00 46.05 2.59
3082 3517 5.459762 TCACGTTAAACGACTTCCAAAGTAG 59.540 40.000 0.00 0.00 46.05 2.57
3083 3518 5.231991 GTCACGTTAAACGACTTCCAAAGTA 59.768 40.000 0.00 0.00 46.05 2.24
3085 3520 4.511734 GTCACGTTAAACGACTTCCAAAG 58.488 43.478 0.00 0.00 46.05 2.77
3086 3521 3.309410 GGTCACGTTAAACGACTTCCAAA 59.691 43.478 0.00 0.00 46.05 3.28
3087 3522 2.865551 GGTCACGTTAAACGACTTCCAA 59.134 45.455 0.00 0.00 46.05 3.53
3088 3523 2.472816 GGTCACGTTAAACGACTTCCA 58.527 47.619 0.00 0.00 46.05 3.53
3089 3524 1.794701 GGGTCACGTTAAACGACTTCC 59.205 52.381 0.00 0.00 46.05 3.46
3090 3525 2.747436 AGGGTCACGTTAAACGACTTC 58.253 47.619 0.00 0.00 46.05 3.01
3091 3526 2.896745 AGGGTCACGTTAAACGACTT 57.103 45.000 0.00 0.00 46.05 3.01
3092 3527 2.363359 AGAAGGGTCACGTTAAACGACT 59.637 45.455 0.00 0.00 46.05 4.18
3093 3528 2.747436 AGAAGGGTCACGTTAAACGAC 58.253 47.619 0.00 0.00 46.05 4.34
3094 3529 3.457610 AAGAAGGGTCACGTTAAACGA 57.542 42.857 0.00 0.00 46.05 3.85
3124 4296 5.997385 ACAAAGCGAATTCGTCATAGTTTT 58.003 33.333 27.24 12.96 42.22 2.43
3126 4298 4.092968 GGACAAAGCGAATTCGTCATAGTT 59.907 41.667 27.24 10.82 42.22 2.24
3129 4301 3.616821 CAGGACAAAGCGAATTCGTCATA 59.383 43.478 27.24 0.00 42.22 2.15
3131 4303 1.798223 CAGGACAAAGCGAATTCGTCA 59.202 47.619 27.24 0.00 42.22 4.35
3132 4304 1.798813 ACAGGACAAAGCGAATTCGTC 59.201 47.619 27.24 19.30 42.22 4.20
3133 4305 1.798813 GACAGGACAAAGCGAATTCGT 59.201 47.619 27.24 12.64 42.22 3.85
3134 4306 2.069273 AGACAGGACAAAGCGAATTCG 58.931 47.619 23.34 23.34 43.27 3.34
3135 4307 4.222114 CAAAGACAGGACAAAGCGAATTC 58.778 43.478 0.00 0.00 0.00 2.17
3138 4310 1.333619 GCAAAGACAGGACAAAGCGAA 59.666 47.619 0.00 0.00 0.00 4.70
3139 4311 0.944386 GCAAAGACAGGACAAAGCGA 59.056 50.000 0.00 0.00 0.00 4.93
3140 4312 0.662619 TGCAAAGACAGGACAAAGCG 59.337 50.000 0.00 0.00 0.00 4.68
3154 4326 1.628340 TGGGACTAGCTAGCTTGCAAA 59.372 47.619 24.88 2.79 34.99 3.68
3155 4327 1.066143 GTGGGACTAGCTAGCTTGCAA 60.066 52.381 24.88 0.89 34.99 4.08
3156 4328 0.537188 GTGGGACTAGCTAGCTTGCA 59.463 55.000 24.88 11.46 34.99 4.08
3157 4329 0.537188 TGTGGGACTAGCTAGCTTGC 59.463 55.000 24.88 15.96 0.00 4.01
3158 4330 1.137872 CCTGTGGGACTAGCTAGCTTG 59.862 57.143 24.88 23.43 33.58 4.01
3159 4331 1.273324 ACCTGTGGGACTAGCTAGCTT 60.273 52.381 24.88 5.38 36.25 3.74
3160 4332 0.336737 ACCTGTGGGACTAGCTAGCT 59.663 55.000 23.12 23.12 36.25 3.32
3161 4333 0.461961 CACCTGTGGGACTAGCTAGC 59.538 60.000 20.91 6.62 36.25 3.42
3162 4334 2.145397 TCACCTGTGGGACTAGCTAG 57.855 55.000 19.44 19.44 36.25 3.42
3163 4335 2.388735 CATCACCTGTGGGACTAGCTA 58.611 52.381 0.00 0.00 36.25 3.32
3165 4337 0.462759 GCATCACCTGTGGGACTAGC 60.463 60.000 0.00 0.00 36.25 3.42
3166 4338 1.134580 CAGCATCACCTGTGGGACTAG 60.135 57.143 0.00 0.00 36.25 2.57
3168 4340 1.681666 CAGCATCACCTGTGGGACT 59.318 57.895 0.00 0.00 36.25 3.85
3169 4341 2.042831 GCAGCATCACCTGTGGGAC 61.043 63.158 0.00 0.00 35.28 4.46
3170 4342 2.352422 GCAGCATCACCTGTGGGA 59.648 61.111 0.00 0.00 35.28 4.37
3171 4343 2.034532 TGCAGCATCACCTGTGGG 59.965 61.111 0.00 0.00 35.28 4.61
3172 4344 2.697761 GCTGCAGCATCACCTGTGG 61.698 63.158 33.36 0.00 41.59 4.17
3173 4345 0.392060 TAGCTGCAGCATCACCTGTG 60.392 55.000 38.24 0.00 45.16 3.66
3174 4346 0.107800 CTAGCTGCAGCATCACCTGT 60.108 55.000 38.24 18.88 45.16 4.00
3175 4347 1.437772 GCTAGCTGCAGCATCACCTG 61.438 60.000 38.24 19.92 45.16 4.00
3176 4348 1.153208 GCTAGCTGCAGCATCACCT 60.153 57.895 38.24 20.37 45.16 4.00
3177 4349 0.105593 TAGCTAGCTGCAGCATCACC 59.894 55.000 38.24 21.20 44.35 4.02
3179 4351 1.068281 GAGTAGCTAGCTGCAGCATCA 59.932 52.381 38.24 22.20 44.35 3.07
3181 4353 0.392336 GGAGTAGCTAGCTGCAGCAT 59.608 55.000 38.24 25.13 44.35 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.