Multiple sequence alignment - TraesCS3B01G003300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G003300 chr3B 100.000 4583 0 0 1 4583 2307486 2312068 0.000000e+00 8464.0
1 TraesCS3B01G003300 chr3B 79.934 2128 313 69 1915 3999 2171144 2169088 0.000000e+00 1459.0
2 TraesCS3B01G003300 chr3B 80.019 2052 285 59 1915 3920 2297803 2299775 0.000000e+00 1402.0
3 TraesCS3B01G003300 chr3B 83.982 1311 183 23 2270 3572 2161961 2160670 0.000000e+00 1232.0
4 TraesCS3B01G003300 chr3B 83.297 455 51 18 977 1424 2163448 2163012 3.320000e-106 396.0
5 TraesCS3B01G003300 chr3B 83.514 370 48 7 99 466 41642888 41642530 2.640000e-87 333.0
6 TraesCS3B01G003300 chr3B 84.962 266 34 5 996 1259 2172221 2171960 9.780000e-67 265.0
7 TraesCS3B01G003300 chr3B 81.949 277 27 13 1514 1776 2163006 2162739 3.590000e-51 213.0
8 TraesCS3B01G003300 chr3B 76.791 349 57 13 1514 1857 2171831 2171502 1.690000e-39 174.0
9 TraesCS3B01G003300 chr3B 94.118 102 4 2 1420 1520 101314946 101315046 2.210000e-33 154.0
10 TraesCS3B01G003300 chr3D 89.608 1453 99 29 1511 2935 3198721 3197293 0.000000e+00 1799.0
11 TraesCS3B01G003300 chr3D 78.075 2317 332 106 2288 4523 3223496 3221275 0.000000e+00 1303.0
12 TraesCS3B01G003300 chr3D 91.513 919 66 9 3668 4583 3196609 3195700 0.000000e+00 1254.0
13 TraesCS3B01G003300 chr3D 91.298 678 39 8 3003 3676 3197292 3196631 0.000000e+00 907.0
14 TraesCS3B01G003300 chr3D 87.353 767 34 33 715 1428 3199473 3198717 0.000000e+00 821.0
15 TraesCS3B01G003300 chr3D 96.000 100 2 2 1416 1515 255449936 255449839 1.320000e-35 161.0
16 TraesCS3B01G003300 chr3D 94.737 76 4 0 639 714 3199704 3199629 8.050000e-23 119.0
17 TraesCS3B01G003300 chr3A 80.672 2142 306 61 1516 3587 373439 371336 0.000000e+00 1563.0
18 TraesCS3B01G003300 chr3A 87.333 750 74 14 2259 3002 399638 398904 0.000000e+00 839.0
19 TraesCS3B01G003300 chr3A 85.345 580 51 18 866 1428 374005 373443 1.850000e-158 569.0
20 TraesCS3B01G003300 chr3A 79.093 904 121 39 3125 3988 398520 397645 1.110000e-155 560.0
21 TraesCS3B01G003300 chr3A 84.424 321 35 12 95 411 670644971 670644662 7.450000e-78 302.0
22 TraesCS3B01G003300 chr3A 86.466 266 33 3 996 1259 400724 400460 5.800000e-74 289.0
23 TraesCS3B01G003300 chr3A 83.654 104 4 4 778 873 374130 374032 8.170000e-13 86.1
24 TraesCS3B01G003300 chr3A 95.652 46 0 1 670 713 401123 401078 6.360000e-09 73.1
25 TraesCS3B01G003300 chr4B 84.906 371 41 8 99 466 3242522 3242880 1.210000e-95 361.0
26 TraesCS3B01G003300 chr4B 91.304 115 5 5 1414 1527 11712984 11712874 7.940000e-33 152.0
27 TraesCS3B01G003300 chr7D 84.252 381 44 12 92 470 9367681 9368047 1.570000e-94 357.0
28 TraesCS3B01G003300 chr7D 86.667 180 21 3 99 275 563409877 563409698 3.620000e-46 196.0
29 TraesCS3B01G003300 chr2A 84.127 378 46 7 95 469 587033631 587033265 2.030000e-93 353.0
30 TraesCS3B01G003300 chr1A 83.820 377 45 12 96 469 12765071 12764708 1.220000e-90 344.0
31 TraesCS3B01G003300 chr5D 82.864 391 50 10 80 466 171601087 171601464 7.350000e-88 335.0
32 TraesCS3B01G003300 chr5D 82.210 371 42 12 99 466 485092932 485092583 9.640000e-77 298.0
33 TraesCS3B01G003300 chr5A 83.511 376 45 9 95 466 25022328 25021966 7.350000e-88 335.0
34 TraesCS3B01G003300 chr5A 77.342 459 88 12 2487 2938 690811483 690811932 1.640000e-64 257.0
35 TraesCS3B01G003300 chr5A 82.110 218 30 5 95 310 466585030 466585240 1.310000e-40 178.0
36 TraesCS3B01G003300 chrUn 79.101 445 91 1 2515 2959 126951676 126951234 5.760000e-79 305.0
37 TraesCS3B01G003300 chr5B 84.737 190 27 2 277 466 542992314 542992127 6.050000e-44 189.0
38 TraesCS3B01G003300 chr4A 85.556 180 23 3 99 275 26029924 26029745 7.830000e-43 185.0
39 TraesCS3B01G003300 chr1B 97.917 96 1 1 1426 1521 604705773 604705679 1.020000e-36 165.0
40 TraesCS3B01G003300 chr1B 92.593 108 7 1 1411 1518 196463128 196463234 2.210000e-33 154.0
41 TraesCS3B01G003300 chr6D 93.519 108 5 2 1419 1526 443958512 443958617 4.750000e-35 159.0
42 TraesCS3B01G003300 chr2B 92.727 110 5 3 1416 1525 578147699 578147805 6.140000e-34 156.0
43 TraesCS3B01G003300 chr2B 92.157 102 5 3 1424 1524 365069388 365069289 1.720000e-29 141.0
44 TraesCS3B01G003300 chr7A 87.692 130 9 6 1392 1519 38814387 38814511 1.330000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G003300 chr3B 2307486 2312068 4582 False 8464.000000 8464 100.000000 1 4583 1 chr3B.!!$F2 4582
1 TraesCS3B01G003300 chr3B 2297803 2299775 1972 False 1402.000000 1402 80.019000 1915 3920 1 chr3B.!!$F1 2005
2 TraesCS3B01G003300 chr3B 2169088 2172221 3133 True 632.666667 1459 80.562333 996 3999 3 chr3B.!!$R3 3003
3 TraesCS3B01G003300 chr3B 2160670 2163448 2778 True 613.666667 1232 83.076000 977 3572 3 chr3B.!!$R2 2595
4 TraesCS3B01G003300 chr3D 3221275 3223496 2221 True 1303.000000 1303 78.075000 2288 4523 1 chr3D.!!$R1 2235
5 TraesCS3B01G003300 chr3D 3195700 3199704 4004 True 980.000000 1799 90.901800 639 4583 5 chr3D.!!$R3 3944
6 TraesCS3B01G003300 chr3A 371336 374130 2794 True 739.366667 1563 83.223667 778 3587 3 chr3A.!!$R2 2809
7 TraesCS3B01G003300 chr3A 397645 401123 3478 True 440.275000 839 87.136000 670 3988 4 chr3A.!!$R3 3318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 1041 0.033109 GCCTCCCATTTAAGCCACCT 60.033 55.0 0.00 0.00 0.00 4.00 F
1005 1300 0.179134 CGTGGGAGTTCGAGATGGAC 60.179 60.0 0.00 0.00 0.00 4.02 F
1763 2147 0.534203 TTTTGACCTCACGTCCAGGC 60.534 55.0 9.63 4.36 41.18 4.85 F
2642 3677 0.613292 AGGAGGAGCTCAGCGAAAGA 60.613 55.0 17.19 0.00 31.08 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 3698 0.676782 GGGCGTTGAAGCACCACTAT 60.677 55.000 0.00 0.0 39.27 2.12 R
2685 3720 1.152183 ACTCGTGGTAGGGGTGGTT 60.152 57.895 0.00 0.0 0.00 3.67 R
2951 3986 1.725641 TGCGTAGATGTGAAAGGCTG 58.274 50.000 0.00 0.0 0.00 4.85 R
3966 5368 0.039165 CTTTTTCTCCTGGTTGCGCC 60.039 55.000 4.18 0.0 37.90 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.895932 CAAATTAATTGGCACTCACTTAGTAC 57.104 34.615 0.39 0.00 34.17 2.73
34 35 8.511321 CAAATTAATTGGCACTCACTTAGTACA 58.489 33.333 0.39 0.00 34.17 2.90
35 36 8.807948 AATTAATTGGCACTCACTTAGTACAT 57.192 30.769 0.00 0.00 35.76 2.29
36 37 9.899661 AATTAATTGGCACTCACTTAGTACATA 57.100 29.630 0.00 0.00 35.76 2.29
38 39 9.899661 TTAATTGGCACTCACTTAGTACATATT 57.100 29.630 0.00 0.00 35.76 1.28
39 40 8.807948 AATTGGCACTCACTTAGTACATATTT 57.192 30.769 0.00 0.00 35.76 1.40
40 41 9.899661 AATTGGCACTCACTTAGTACATATTTA 57.100 29.630 0.00 0.00 35.76 1.40
41 42 8.942338 TTGGCACTCACTTAGTACATATTTAG 57.058 34.615 0.00 0.00 35.76 1.85
42 43 8.301252 TGGCACTCACTTAGTACATATTTAGA 57.699 34.615 0.00 0.00 35.76 2.10
43 44 8.414003 TGGCACTCACTTAGTACATATTTAGAG 58.586 37.037 0.00 0.00 35.76 2.43
44 45 8.630917 GGCACTCACTTAGTACATATTTAGAGA 58.369 37.037 0.00 0.00 35.76 3.10
45 46 9.672086 GCACTCACTTAGTACATATTTAGAGAG 57.328 37.037 0.00 0.00 35.76 3.20
157 158 8.388484 AGATTATAATTTGCAGCTCTACAAGG 57.612 34.615 0.00 0.00 0.00 3.61
158 159 4.907879 ATAATTTGCAGCTCTACAAGGC 57.092 40.909 0.00 0.00 0.00 4.35
159 160 1.467920 ATTTGCAGCTCTACAAGGCC 58.532 50.000 0.00 0.00 0.00 5.19
160 161 0.110295 TTTGCAGCTCTACAAGGCCA 59.890 50.000 5.01 0.00 0.00 5.36
161 162 0.606401 TTGCAGCTCTACAAGGCCAC 60.606 55.000 5.01 0.00 0.00 5.01
162 163 1.298014 GCAGCTCTACAAGGCCACT 59.702 57.895 5.01 0.00 0.00 4.00
163 164 0.537188 GCAGCTCTACAAGGCCACTA 59.463 55.000 5.01 0.00 0.00 2.74
164 165 1.066143 GCAGCTCTACAAGGCCACTAA 60.066 52.381 5.01 0.00 0.00 2.24
165 166 2.622436 CAGCTCTACAAGGCCACTAAC 58.378 52.381 5.01 0.00 0.00 2.34
166 167 2.028112 CAGCTCTACAAGGCCACTAACA 60.028 50.000 5.01 0.00 0.00 2.41
167 168 2.028020 AGCTCTACAAGGCCACTAACAC 60.028 50.000 5.01 0.00 0.00 3.32
168 169 2.935676 GCTCTACAAGGCCACTAACACC 60.936 54.545 5.01 0.00 0.00 4.16
169 170 2.301870 CTCTACAAGGCCACTAACACCA 59.698 50.000 5.01 0.00 0.00 4.17
170 171 2.706723 TCTACAAGGCCACTAACACCAA 59.293 45.455 5.01 0.00 0.00 3.67
171 172 2.675658 ACAAGGCCACTAACACCAAT 57.324 45.000 5.01 0.00 0.00 3.16
172 173 2.514803 ACAAGGCCACTAACACCAATC 58.485 47.619 5.01 0.00 0.00 2.67
173 174 1.468520 CAAGGCCACTAACACCAATCG 59.531 52.381 5.01 0.00 0.00 3.34
174 175 0.981183 AGGCCACTAACACCAATCGA 59.019 50.000 5.01 0.00 0.00 3.59
175 176 1.066143 AGGCCACTAACACCAATCGAG 60.066 52.381 5.01 0.00 0.00 4.04
176 177 1.066430 GGCCACTAACACCAATCGAGA 60.066 52.381 0.00 0.00 0.00 4.04
177 178 2.420129 GGCCACTAACACCAATCGAGAT 60.420 50.000 0.00 0.00 0.00 2.75
178 179 3.181469 GGCCACTAACACCAATCGAGATA 60.181 47.826 0.00 0.00 0.00 1.98
179 180 4.439057 GCCACTAACACCAATCGAGATAA 58.561 43.478 0.00 0.00 0.00 1.75
180 181 4.873827 GCCACTAACACCAATCGAGATAAA 59.126 41.667 0.00 0.00 0.00 1.40
181 182 5.353123 GCCACTAACACCAATCGAGATAAAA 59.647 40.000 0.00 0.00 0.00 1.52
182 183 6.038271 GCCACTAACACCAATCGAGATAAAAT 59.962 38.462 0.00 0.00 0.00 1.82
183 184 7.415206 GCCACTAACACCAATCGAGATAAAATT 60.415 37.037 0.00 0.00 0.00 1.82
184 185 7.910162 CCACTAACACCAATCGAGATAAAATTG 59.090 37.037 0.00 0.00 0.00 2.32
190 191 6.064846 CCAATCGAGATAAAATTGGTGAGG 57.935 41.667 3.95 0.00 42.86 3.86
191 192 5.590259 CCAATCGAGATAAAATTGGTGAGGT 59.410 40.000 3.95 0.00 42.86 3.85
192 193 6.095440 CCAATCGAGATAAAATTGGTGAGGTT 59.905 38.462 3.95 0.00 42.86 3.50
193 194 7.362920 CCAATCGAGATAAAATTGGTGAGGTTT 60.363 37.037 3.95 0.00 42.86 3.27
194 195 8.673711 CAATCGAGATAAAATTGGTGAGGTTTA 58.326 33.333 0.00 0.00 0.00 2.01
195 196 7.605410 TCGAGATAAAATTGGTGAGGTTTAC 57.395 36.000 0.00 0.00 0.00 2.01
196 197 6.596497 TCGAGATAAAATTGGTGAGGTTTACC 59.404 38.462 0.00 0.00 38.71 2.85
197 198 6.183360 CGAGATAAAATTGGTGAGGTTTACCC 60.183 42.308 0.00 0.00 37.40 3.69
198 199 5.955959 AGATAAAATTGGTGAGGTTTACCCC 59.044 40.000 0.00 0.00 37.40 4.95
199 200 2.209690 AATTGGTGAGGTTTACCCCG 57.790 50.000 0.00 0.00 37.40 5.73
200 201 1.069775 ATTGGTGAGGTTTACCCCGT 58.930 50.000 0.00 0.00 37.40 5.28
201 202 1.727062 TTGGTGAGGTTTACCCCGTA 58.273 50.000 0.00 0.00 37.40 4.02
202 203 1.955451 TGGTGAGGTTTACCCCGTAT 58.045 50.000 0.00 0.00 37.40 3.06
203 204 2.268107 TGGTGAGGTTTACCCCGTATT 58.732 47.619 0.00 0.00 37.40 1.89
204 205 3.448934 TGGTGAGGTTTACCCCGTATTA 58.551 45.455 0.00 0.00 37.40 0.98
205 206 3.451902 TGGTGAGGTTTACCCCGTATTAG 59.548 47.826 0.00 0.00 37.40 1.73
206 207 3.461061 GTGAGGTTTACCCCGTATTAGC 58.539 50.000 0.00 0.00 36.42 3.09
207 208 3.106054 TGAGGTTTACCCCGTATTAGCA 58.894 45.455 0.00 0.00 36.42 3.49
208 209 3.518705 TGAGGTTTACCCCGTATTAGCAA 59.481 43.478 0.00 0.00 36.42 3.91
209 210 3.873361 GAGGTTTACCCCGTATTAGCAAC 59.127 47.826 0.00 0.00 36.42 4.17
210 211 2.945008 GGTTTACCCCGTATTAGCAACC 59.055 50.000 0.00 0.00 0.00 3.77
211 212 2.600470 TTACCCCGTATTAGCAACCG 57.400 50.000 0.00 0.00 0.00 4.44
212 213 1.774110 TACCCCGTATTAGCAACCGA 58.226 50.000 0.00 0.00 0.00 4.69
213 214 0.462789 ACCCCGTATTAGCAACCGAG 59.537 55.000 0.00 0.00 0.00 4.63
214 215 0.249741 CCCCGTATTAGCAACCGAGG 60.250 60.000 0.00 0.00 0.00 4.63
215 216 0.748450 CCCGTATTAGCAACCGAGGA 59.252 55.000 0.00 0.00 0.00 3.71
216 217 1.537562 CCCGTATTAGCAACCGAGGAC 60.538 57.143 0.00 0.00 0.00 3.85
217 218 1.135527 CCGTATTAGCAACCGAGGACA 59.864 52.381 0.00 0.00 0.00 4.02
218 219 2.223971 CCGTATTAGCAACCGAGGACAT 60.224 50.000 0.00 0.00 0.00 3.06
219 220 3.005050 CCGTATTAGCAACCGAGGACATA 59.995 47.826 0.00 0.00 0.00 2.29
220 221 4.500205 CCGTATTAGCAACCGAGGACATAA 60.500 45.833 0.00 0.00 0.00 1.90
221 222 5.227908 CGTATTAGCAACCGAGGACATAAT 58.772 41.667 0.00 0.00 0.00 1.28
222 223 6.384224 CGTATTAGCAACCGAGGACATAATA 58.616 40.000 0.00 0.00 0.00 0.98
223 224 6.307318 CGTATTAGCAACCGAGGACATAATAC 59.693 42.308 0.00 8.16 33.98 1.89
224 225 3.470645 AGCAACCGAGGACATAATACC 57.529 47.619 0.00 0.00 0.00 2.73
225 226 3.039011 AGCAACCGAGGACATAATACCT 58.961 45.455 0.00 0.00 39.41 3.08
226 227 3.069729 AGCAACCGAGGACATAATACCTC 59.930 47.826 0.00 0.00 46.31 3.85
234 235 4.330250 AGGACATAATACCTCATGCATGC 58.670 43.478 22.25 11.82 0.00 4.06
235 236 4.074259 GGACATAATACCTCATGCATGCA 58.926 43.478 25.04 25.04 0.00 3.96
236 237 4.703575 GGACATAATACCTCATGCATGCAT 59.296 41.667 27.46 27.46 37.08 3.96
248 249 3.471354 CATGCATGCTGGAGTGAGA 57.529 52.632 20.33 0.00 0.00 3.27
249 250 1.746470 CATGCATGCTGGAGTGAGAA 58.254 50.000 20.33 0.00 0.00 2.87
250 251 1.671328 CATGCATGCTGGAGTGAGAAG 59.329 52.381 20.33 0.00 0.00 2.85
251 252 0.035725 TGCATGCTGGAGTGAGAAGG 60.036 55.000 20.33 0.00 0.00 3.46
252 253 0.035630 GCATGCTGGAGTGAGAAGGT 60.036 55.000 11.37 0.00 0.00 3.50
253 254 1.612726 GCATGCTGGAGTGAGAAGGTT 60.613 52.381 11.37 0.00 0.00 3.50
254 255 2.082231 CATGCTGGAGTGAGAAGGTTG 58.918 52.381 0.00 0.00 0.00 3.77
255 256 0.397941 TGCTGGAGTGAGAAGGTTGG 59.602 55.000 0.00 0.00 0.00 3.77
256 257 0.398318 GCTGGAGTGAGAAGGTTGGT 59.602 55.000 0.00 0.00 0.00 3.67
257 258 1.202818 GCTGGAGTGAGAAGGTTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
258 259 2.749800 GCTGGAGTGAGAAGGTTGGTTT 60.750 50.000 0.00 0.00 0.00 3.27
259 260 2.880890 CTGGAGTGAGAAGGTTGGTTTG 59.119 50.000 0.00 0.00 0.00 2.93
260 261 1.609072 GGAGTGAGAAGGTTGGTTTGC 59.391 52.381 0.00 0.00 0.00 3.68
261 262 2.297701 GAGTGAGAAGGTTGGTTTGCA 58.702 47.619 0.00 0.00 0.00 4.08
262 263 2.887152 GAGTGAGAAGGTTGGTTTGCAT 59.113 45.455 0.00 0.00 0.00 3.96
263 264 2.624838 AGTGAGAAGGTTGGTTTGCATG 59.375 45.455 0.00 0.00 0.00 4.06
264 265 1.340889 TGAGAAGGTTGGTTTGCATGC 59.659 47.619 11.82 11.82 0.00 4.06
265 266 1.340889 GAGAAGGTTGGTTTGCATGCA 59.659 47.619 18.46 18.46 0.00 3.96
266 267 1.972795 AGAAGGTTGGTTTGCATGCAT 59.027 42.857 23.37 2.11 0.00 3.96
267 268 2.028748 AGAAGGTTGGTTTGCATGCATC 60.029 45.455 23.37 17.11 0.00 3.91
268 269 1.340088 AGGTTGGTTTGCATGCATCA 58.660 45.000 23.37 16.99 0.00 3.07
269 270 1.001181 AGGTTGGTTTGCATGCATCAC 59.999 47.619 23.37 20.23 0.00 3.06
270 271 1.270199 GGTTGGTTTGCATGCATCACA 60.270 47.619 23.37 17.06 0.00 3.58
271 272 2.613474 GGTTGGTTTGCATGCATCACAT 60.613 45.455 23.37 0.00 40.66 3.21
272 273 3.368220 GGTTGGTTTGCATGCATCACATA 60.368 43.478 23.37 11.18 36.64 2.29
273 274 4.244066 GTTGGTTTGCATGCATCACATAA 58.756 39.130 23.37 15.90 36.64 1.90
274 275 4.739587 TGGTTTGCATGCATCACATAAT 57.260 36.364 23.37 0.00 36.64 1.28
275 276 5.087391 TGGTTTGCATGCATCACATAATT 57.913 34.783 23.37 0.00 36.64 1.40
276 277 5.110598 TGGTTTGCATGCATCACATAATTC 58.889 37.500 23.37 8.69 36.64 2.17
277 278 5.110598 GGTTTGCATGCATCACATAATTCA 58.889 37.500 23.37 0.00 36.64 2.57
278 279 5.005971 GGTTTGCATGCATCACATAATTCAC 59.994 40.000 23.37 0.00 36.64 3.18
279 280 4.985538 TGCATGCATCACATAATTCACA 57.014 36.364 18.46 0.00 36.64 3.58
280 281 5.523438 TGCATGCATCACATAATTCACAT 57.477 34.783 18.46 0.00 36.64 3.21
281 282 5.908341 TGCATGCATCACATAATTCACATT 58.092 33.333 18.46 0.00 36.64 2.71
282 283 7.040473 TGCATGCATCACATAATTCACATTA 57.960 32.000 18.46 0.00 36.64 1.90
283 284 7.490000 TGCATGCATCACATAATTCACATTAA 58.510 30.769 18.46 0.00 36.64 1.40
284 285 8.145122 TGCATGCATCACATAATTCACATTAAT 58.855 29.630 18.46 0.00 36.64 1.40
285 286 8.644619 GCATGCATCACATAATTCACATTAATC 58.355 33.333 14.21 0.00 36.64 1.75
286 287 9.685828 CATGCATCACATAATTCACATTAATCA 57.314 29.630 0.00 0.00 36.64 2.57
288 289 9.518906 TGCATCACATAATTCACATTAATCAAC 57.481 29.630 0.00 0.00 0.00 3.18
289 290 9.740239 GCATCACATAATTCACATTAATCAACT 57.260 29.630 0.00 0.00 0.00 3.16
300 301 9.653287 TTCACATTAATCAACTAACTAGGAGTG 57.347 33.333 0.00 0.00 0.00 3.51
301 302 9.031537 TCACATTAATCAACTAACTAGGAGTGA 57.968 33.333 0.00 0.00 0.00 3.41
302 303 9.653287 CACATTAATCAACTAACTAGGAGTGAA 57.347 33.333 0.00 0.00 0.00 3.18
308 309 9.628500 AATCAACTAACTAGGAGTGAAAAAGTT 57.372 29.630 0.00 0.00 34.86 2.66
309 310 8.433421 TCAACTAACTAGGAGTGAAAAAGTTG 57.567 34.615 0.00 0.00 41.50 3.16
310 311 8.044908 TCAACTAACTAGGAGTGAAAAAGTTGT 58.955 33.333 10.20 0.00 41.12 3.32
311 312 9.321562 CAACTAACTAGGAGTGAAAAAGTTGTA 57.678 33.333 0.00 0.00 37.55 2.41
315 316 8.747538 AACTAGGAGTGAAAAAGTTGTATTGT 57.252 30.769 0.00 0.00 0.00 2.71
316 317 8.747538 ACTAGGAGTGAAAAAGTTGTATTGTT 57.252 30.769 0.00 0.00 0.00 2.83
317 318 8.621286 ACTAGGAGTGAAAAAGTTGTATTGTTG 58.379 33.333 0.00 0.00 0.00 3.33
318 319 7.404671 AGGAGTGAAAAAGTTGTATTGTTGT 57.595 32.000 0.00 0.00 0.00 3.32
319 320 7.257722 AGGAGTGAAAAAGTTGTATTGTTGTG 58.742 34.615 0.00 0.00 0.00 3.33
320 321 6.019881 GGAGTGAAAAAGTTGTATTGTTGTGC 60.020 38.462 0.00 0.00 0.00 4.57
321 322 5.514914 AGTGAAAAAGTTGTATTGTTGTGCG 59.485 36.000 0.00 0.00 0.00 5.34
322 323 5.287513 GTGAAAAAGTTGTATTGTTGTGCGT 59.712 36.000 0.00 0.00 0.00 5.24
323 324 5.864474 TGAAAAAGTTGTATTGTTGTGCGTT 59.136 32.000 0.00 0.00 0.00 4.84
324 325 5.942325 AAAAGTTGTATTGTTGTGCGTTC 57.058 34.783 0.00 0.00 0.00 3.95
325 326 4.624336 AAGTTGTATTGTTGTGCGTTCA 57.376 36.364 0.00 0.00 0.00 3.18
326 327 4.624336 AGTTGTATTGTTGTGCGTTCAA 57.376 36.364 0.00 0.00 0.00 2.69
327 328 4.597079 AGTTGTATTGTTGTGCGTTCAAG 58.403 39.130 0.00 0.00 0.00 3.02
328 329 4.334203 AGTTGTATTGTTGTGCGTTCAAGA 59.666 37.500 0.00 0.00 0.00 3.02
329 330 4.884458 TGTATTGTTGTGCGTTCAAGAA 57.116 36.364 6.71 6.71 35.63 2.52
330 331 5.236655 TGTATTGTTGTGCGTTCAAGAAA 57.763 34.783 7.90 2.18 35.02 2.52
331 332 5.641709 TGTATTGTTGTGCGTTCAAGAAAA 58.358 33.333 7.90 0.34 35.02 2.29
332 333 6.093404 TGTATTGTTGTGCGTTCAAGAAAAA 58.907 32.000 7.90 0.06 35.02 1.94
358 359 8.889849 AATACACATTAATTAACACGTCAAGC 57.110 30.769 0.00 0.00 0.00 4.01
360 361 5.177881 ACACATTAATTAACACGTCAAGCGA 59.822 36.000 0.00 0.00 44.77 4.93
361 362 5.728049 CACATTAATTAACACGTCAAGCGAG 59.272 40.000 0.00 0.00 44.77 5.03
362 363 5.636121 ACATTAATTAACACGTCAAGCGAGA 59.364 36.000 0.00 0.00 44.77 4.04
363 364 6.146510 ACATTAATTAACACGTCAAGCGAGAA 59.853 34.615 0.00 0.00 44.77 2.87
364 365 4.647291 AATTAACACGTCAAGCGAGAAG 57.353 40.909 0.00 0.00 44.77 2.85
365 366 3.358707 TTAACACGTCAAGCGAGAAGA 57.641 42.857 0.00 0.00 44.77 2.87
366 367 2.218953 AACACGTCAAGCGAGAAGAA 57.781 45.000 0.00 0.00 44.77 2.52
367 368 2.218953 ACACGTCAAGCGAGAAGAAA 57.781 45.000 0.00 0.00 44.77 2.52
368 369 2.546778 ACACGTCAAGCGAGAAGAAAA 58.453 42.857 0.00 0.00 44.77 2.29
369 370 2.540101 ACACGTCAAGCGAGAAGAAAAG 59.460 45.455 0.00 0.00 44.77 2.27
370 371 2.794910 CACGTCAAGCGAGAAGAAAAGA 59.205 45.455 0.00 0.00 44.77 2.52
371 372 2.795470 ACGTCAAGCGAGAAGAAAAGAC 59.205 45.455 0.00 0.00 44.77 3.01
372 373 3.053455 CGTCAAGCGAGAAGAAAAGACT 58.947 45.455 0.00 0.00 44.77 3.24
373 374 4.227538 CGTCAAGCGAGAAGAAAAGACTA 58.772 43.478 0.00 0.00 44.77 2.59
374 375 4.322274 CGTCAAGCGAGAAGAAAAGACTAG 59.678 45.833 0.00 0.00 44.77 2.57
375 376 5.224135 GTCAAGCGAGAAGAAAAGACTAGT 58.776 41.667 0.00 0.00 0.00 2.57
376 377 5.692654 GTCAAGCGAGAAGAAAAGACTAGTT 59.307 40.000 0.00 0.00 0.00 2.24
377 378 6.201234 GTCAAGCGAGAAGAAAAGACTAGTTT 59.799 38.462 0.00 0.00 0.00 2.66
378 379 6.201044 TCAAGCGAGAAGAAAAGACTAGTTTG 59.799 38.462 0.00 0.00 32.49 2.93
379 380 4.449405 AGCGAGAAGAAAAGACTAGTTTGC 59.551 41.667 0.00 0.00 0.00 3.68
380 381 4.211374 GCGAGAAGAAAAGACTAGTTTGCA 59.789 41.667 0.00 0.00 0.00 4.08
381 382 5.277345 GCGAGAAGAAAAGACTAGTTTGCAA 60.277 40.000 0.00 0.00 0.00 4.08
382 383 6.130058 CGAGAAGAAAAGACTAGTTTGCAAC 58.870 40.000 0.00 0.00 0.00 4.17
383 384 6.238103 CGAGAAGAAAAGACTAGTTTGCAACA 60.238 38.462 0.00 0.00 0.00 3.33
384 385 7.519008 CGAGAAGAAAAGACTAGTTTGCAACAT 60.519 37.037 0.00 0.00 0.00 2.71
385 386 8.000780 AGAAGAAAAGACTAGTTTGCAACATT 57.999 30.769 0.00 0.00 0.00 2.71
386 387 7.917505 AGAAGAAAAGACTAGTTTGCAACATTG 59.082 33.333 0.00 0.00 0.00 2.82
387 388 7.333528 AGAAAAGACTAGTTTGCAACATTGA 57.666 32.000 0.00 0.00 0.00 2.57
388 389 7.196331 AGAAAAGACTAGTTTGCAACATTGAC 58.804 34.615 0.00 0.00 0.00 3.18
389 390 6.699575 AAAGACTAGTTTGCAACATTGACT 57.300 33.333 0.00 1.75 0.00 3.41
390 391 6.699575 AAGACTAGTTTGCAACATTGACTT 57.300 33.333 0.00 1.34 0.00 3.01
391 392 7.801716 AAGACTAGTTTGCAACATTGACTTA 57.198 32.000 0.00 0.00 0.00 2.24
392 393 7.801716 AGACTAGTTTGCAACATTGACTTAA 57.198 32.000 0.00 0.00 0.00 1.85
393 394 7.865707 AGACTAGTTTGCAACATTGACTTAAG 58.134 34.615 0.00 0.00 0.00 1.85
394 395 7.499232 AGACTAGTTTGCAACATTGACTTAAGT 59.501 33.333 8.13 8.13 0.00 2.24
395 396 7.417612 ACTAGTTTGCAACATTGACTTAAGTG 58.582 34.615 14.14 0.62 0.00 3.16
396 397 6.449635 AGTTTGCAACATTGACTTAAGTGA 57.550 33.333 14.14 0.39 0.00 3.41
397 398 6.265577 AGTTTGCAACATTGACTTAAGTGAC 58.734 36.000 14.14 0.00 0.00 3.67
398 399 4.829064 TGCAACATTGACTTAAGTGACC 57.171 40.909 14.14 0.00 0.00 4.02
399 400 4.203226 TGCAACATTGACTTAAGTGACCA 58.797 39.130 14.14 1.74 0.00 4.02
400 401 4.826733 TGCAACATTGACTTAAGTGACCAT 59.173 37.500 14.14 0.00 0.00 3.55
401 402 5.301551 TGCAACATTGACTTAAGTGACCATT 59.698 36.000 14.14 0.00 0.00 3.16
402 403 6.488344 TGCAACATTGACTTAAGTGACCATTA 59.512 34.615 14.14 0.00 0.00 1.90
403 404 7.013750 TGCAACATTGACTTAAGTGACCATTAA 59.986 33.333 14.14 0.00 0.00 1.40
404 405 8.028938 GCAACATTGACTTAAGTGACCATTAAT 58.971 33.333 14.14 0.00 0.00 1.40
405 406 9.912634 CAACATTGACTTAAGTGACCATTAATT 57.087 29.630 14.14 0.00 0.00 1.40
411 412 9.880157 TGACTTAAGTGACCATTAATTACTACC 57.120 33.333 14.14 0.00 0.00 3.18
415 416 9.675464 TTAAGTGACCATTAATTACTACCTTGG 57.325 33.333 0.00 0.00 0.00 3.61
416 417 7.266905 AGTGACCATTAATTACTACCTTGGT 57.733 36.000 0.00 0.00 38.64 3.67
417 418 8.383374 AGTGACCATTAATTACTACCTTGGTA 57.617 34.615 0.00 0.00 36.19 3.25
418 419 8.999895 AGTGACCATTAATTACTACCTTGGTAT 58.000 33.333 0.00 0.00 36.19 2.73
419 420 9.269453 GTGACCATTAATTACTACCTTGGTATC 57.731 37.037 0.00 0.00 36.19 2.24
420 421 9.220906 TGACCATTAATTACTACCTTGGTATCT 57.779 33.333 0.00 0.00 36.19 1.98
421 422 9.490379 GACCATTAATTACTACCTTGGTATCTG 57.510 37.037 0.00 0.00 36.19 2.90
422 423 8.999895 ACCATTAATTACTACCTTGGTATCTGT 58.000 33.333 0.00 0.00 34.37 3.41
435 436 9.830186 ACCTTGGTATCTGTAATATATGAGTCT 57.170 33.333 0.00 0.00 0.00 3.24
439 440 9.025041 TGGTATCTGTAATATATGAGTCTGTGG 57.975 37.037 0.00 0.00 0.00 4.17
440 441 7.976734 GGTATCTGTAATATATGAGTCTGTGGC 59.023 40.741 0.00 0.00 0.00 5.01
441 442 6.346477 TCTGTAATATATGAGTCTGTGGCC 57.654 41.667 0.00 0.00 0.00 5.36
442 443 6.077993 TCTGTAATATATGAGTCTGTGGCCT 58.922 40.000 3.32 0.00 0.00 5.19
443 444 6.554982 TCTGTAATATATGAGTCTGTGGCCTT 59.445 38.462 3.32 0.00 0.00 4.35
444 445 6.524734 TGTAATATATGAGTCTGTGGCCTTG 58.475 40.000 3.32 0.00 0.00 3.61
445 446 5.636903 AATATATGAGTCTGTGGCCTTGT 57.363 39.130 3.32 0.00 0.00 3.16
446 447 6.747414 AATATATGAGTCTGTGGCCTTGTA 57.253 37.500 3.32 0.00 0.00 2.41
447 448 6.942163 ATATATGAGTCTGTGGCCTTGTAT 57.058 37.500 3.32 0.00 0.00 2.29
448 449 8.435931 AATATATGAGTCTGTGGCCTTGTATA 57.564 34.615 3.32 0.00 0.00 1.47
449 450 6.747414 ATATGAGTCTGTGGCCTTGTATAA 57.253 37.500 3.32 0.00 0.00 0.98
450 451 4.901197 TGAGTCTGTGGCCTTGTATAAA 57.099 40.909 3.32 0.00 0.00 1.40
451 452 5.235850 TGAGTCTGTGGCCTTGTATAAAA 57.764 39.130 3.32 0.00 0.00 1.52
452 453 5.626142 TGAGTCTGTGGCCTTGTATAAAAA 58.374 37.500 3.32 0.00 0.00 1.94
453 454 6.245408 TGAGTCTGTGGCCTTGTATAAAAAT 58.755 36.000 3.32 0.00 0.00 1.82
454 455 7.398829 TGAGTCTGTGGCCTTGTATAAAAATA 58.601 34.615 3.32 0.00 0.00 1.40
455 456 8.052748 TGAGTCTGTGGCCTTGTATAAAAATAT 58.947 33.333 3.32 0.00 0.00 1.28
456 457 9.555727 GAGTCTGTGGCCTTGTATAAAAATATA 57.444 33.333 3.32 0.00 0.00 0.86
457 458 9.561069 AGTCTGTGGCCTTGTATAAAAATATAG 57.439 33.333 3.32 0.00 0.00 1.31
458 459 9.555727 GTCTGTGGCCTTGTATAAAAATATAGA 57.444 33.333 3.32 0.00 0.00 1.98
459 460 9.778741 TCTGTGGCCTTGTATAAAAATATAGAG 57.221 33.333 3.32 0.00 0.00 2.43
460 461 8.918202 TGTGGCCTTGTATAAAAATATAGAGG 57.082 34.615 3.32 0.00 0.00 3.69
461 462 7.942341 TGTGGCCTTGTATAAAAATATAGAGGG 59.058 37.037 3.32 0.00 0.00 4.30
462 463 8.161425 GTGGCCTTGTATAAAAATATAGAGGGA 58.839 37.037 3.32 0.00 27.99 4.20
463 464 8.383175 TGGCCTTGTATAAAAATATAGAGGGAG 58.617 37.037 3.32 0.00 27.99 4.30
464 465 8.383947 GGCCTTGTATAAAAATATAGAGGGAGT 58.616 37.037 0.00 0.00 27.99 3.85
518 519 9.816354 AGACATTATATTTGTGTATTTTTGGGC 57.184 29.630 0.00 0.00 0.00 5.36
519 520 9.816354 GACATTATATTTGTGTATTTTTGGGCT 57.184 29.630 0.00 0.00 0.00 5.19
522 523 9.830975 ATTATATTTGTGTATTTTTGGGCTTCC 57.169 29.630 0.00 0.00 0.00 3.46
523 524 3.651803 TTGTGTATTTTTGGGCTTCCG 57.348 42.857 0.00 0.00 0.00 4.30
524 525 1.889829 TGTGTATTTTTGGGCTTCCGG 59.110 47.619 0.00 0.00 0.00 5.14
525 526 0.892063 TGTATTTTTGGGCTTCCGGC 59.108 50.000 0.00 0.00 40.90 6.13
526 527 1.182667 GTATTTTTGGGCTTCCGGCT 58.817 50.000 0.00 0.00 41.46 5.52
527 528 1.135112 GTATTTTTGGGCTTCCGGCTG 60.135 52.381 0.00 0.00 41.46 4.85
528 529 1.543944 ATTTTTGGGCTTCCGGCTGG 61.544 55.000 4.71 4.71 41.46 4.85
529 530 4.676951 TTTGGGCTTCCGGCTGGG 62.677 66.667 12.87 0.00 41.46 4.45
548 549 4.387343 CCCATGCCCAGGCCTGTT 62.387 66.667 30.63 10.28 41.09 3.16
549 550 2.284112 CCATGCCCAGGCCTGTTT 60.284 61.111 30.63 9.91 41.09 2.83
550 551 2.353610 CCATGCCCAGGCCTGTTTC 61.354 63.158 30.63 18.68 41.09 2.78
551 552 1.607178 CATGCCCAGGCCTGTTTCA 60.607 57.895 30.63 23.28 41.09 2.69
552 553 0.974010 CATGCCCAGGCCTGTTTCAT 60.974 55.000 30.63 24.32 41.09 2.57
553 554 0.974010 ATGCCCAGGCCTGTTTCATG 60.974 55.000 30.63 14.33 41.09 3.07
554 555 2.353610 GCCCAGGCCTGTTTCATGG 61.354 63.158 30.63 23.15 34.56 3.66
555 556 1.383799 CCCAGGCCTGTTTCATGGA 59.616 57.895 30.63 0.00 32.55 3.41
556 557 0.682209 CCCAGGCCTGTTTCATGGAG 60.682 60.000 30.63 12.11 32.55 3.86
557 558 0.038744 CCAGGCCTGTTTCATGGAGT 59.961 55.000 30.63 0.00 32.55 3.85
558 559 1.548582 CCAGGCCTGTTTCATGGAGTT 60.549 52.381 30.63 0.00 32.55 3.01
559 560 1.542915 CAGGCCTGTTTCATGGAGTTG 59.457 52.381 25.53 0.00 0.00 3.16
560 561 0.244721 GGCCTGTTTCATGGAGTTGC 59.755 55.000 0.00 0.00 0.00 4.17
561 562 1.251251 GCCTGTTTCATGGAGTTGCT 58.749 50.000 0.00 0.00 0.00 3.91
562 563 1.200948 GCCTGTTTCATGGAGTTGCTC 59.799 52.381 0.00 0.00 0.00 4.26
563 564 2.787994 CCTGTTTCATGGAGTTGCTCT 58.212 47.619 0.00 0.00 0.00 4.09
564 565 3.152341 CCTGTTTCATGGAGTTGCTCTT 58.848 45.455 0.00 0.00 0.00 2.85
565 566 4.326826 CCTGTTTCATGGAGTTGCTCTTA 58.673 43.478 0.00 0.00 0.00 2.10
566 567 4.946157 CCTGTTTCATGGAGTTGCTCTTAT 59.054 41.667 0.00 0.00 0.00 1.73
567 568 6.115446 CCTGTTTCATGGAGTTGCTCTTATA 58.885 40.000 0.00 0.00 0.00 0.98
568 569 6.769822 CCTGTTTCATGGAGTTGCTCTTATAT 59.230 38.462 0.00 0.00 0.00 0.86
569 570 7.933577 CCTGTTTCATGGAGTTGCTCTTATATA 59.066 37.037 0.00 0.00 0.00 0.86
570 571 9.499479 CTGTTTCATGGAGTTGCTCTTATATAT 57.501 33.333 0.00 0.00 0.00 0.86
575 576 9.533831 TCATGGAGTTGCTCTTATATATACAGA 57.466 33.333 0.00 0.00 0.00 3.41
576 577 9.800433 CATGGAGTTGCTCTTATATATACAGAG 57.200 37.037 18.26 18.26 37.67 3.35
606 607 6.800072 TTTTTGGATAAAGGGTGTCAAAGT 57.200 33.333 0.00 0.00 0.00 2.66
607 608 7.899648 TTTTTGGATAAAGGGTGTCAAAGTA 57.100 32.000 0.00 0.00 0.00 2.24
608 609 8.485578 TTTTTGGATAAAGGGTGTCAAAGTAT 57.514 30.769 0.00 0.00 0.00 2.12
609 610 7.696992 TTTGGATAAAGGGTGTCAAAGTATC 57.303 36.000 0.00 0.00 0.00 2.24
610 611 6.636454 TGGATAAAGGGTGTCAAAGTATCT 57.364 37.500 0.00 0.00 0.00 1.98
611 612 6.650120 TGGATAAAGGGTGTCAAAGTATCTC 58.350 40.000 0.00 0.00 0.00 2.75
612 613 6.056236 GGATAAAGGGTGTCAAAGTATCTCC 58.944 44.000 0.00 0.00 0.00 3.71
613 614 4.993705 AAAGGGTGTCAAAGTATCTCCA 57.006 40.909 0.00 0.00 0.00 3.86
614 615 3.983044 AGGGTGTCAAAGTATCTCCAC 57.017 47.619 0.00 0.00 0.00 4.02
615 616 3.248024 AGGGTGTCAAAGTATCTCCACA 58.752 45.455 0.00 0.00 0.00 4.17
616 617 3.650942 AGGGTGTCAAAGTATCTCCACAA 59.349 43.478 0.00 0.00 0.00 3.33
617 618 4.104102 AGGGTGTCAAAGTATCTCCACAAA 59.896 41.667 0.00 0.00 0.00 2.83
618 619 4.825085 GGGTGTCAAAGTATCTCCACAAAA 59.175 41.667 0.00 0.00 0.00 2.44
619 620 5.300792 GGGTGTCAAAGTATCTCCACAAAAA 59.699 40.000 0.00 0.00 0.00 1.94
620 621 6.015434 GGGTGTCAAAGTATCTCCACAAAAAT 60.015 38.462 0.00 0.00 0.00 1.82
621 622 7.175990 GGGTGTCAAAGTATCTCCACAAAAATA 59.824 37.037 0.00 0.00 0.00 1.40
622 623 8.237267 GGTGTCAAAGTATCTCCACAAAAATAG 58.763 37.037 0.00 0.00 0.00 1.73
623 624 8.999431 GTGTCAAAGTATCTCCACAAAAATAGA 58.001 33.333 0.00 0.00 0.00 1.98
624 625 9.567776 TGTCAAAGTATCTCCACAAAAATAGAA 57.432 29.630 0.00 0.00 0.00 2.10
719 875 0.796312 GTGCAACCACATACGGAGTG 59.204 55.000 0.00 0.00 41.22 3.51
724 880 0.108804 ACCACATACGGAGTGCTTCG 60.109 55.000 0.00 0.00 45.73 3.79
769 934 7.726216 TCTAGAGTGTTTGGTGTCCATATATG 58.274 38.462 5.68 5.68 31.53 1.78
772 937 5.437060 AGTGTTTGGTGTCCATATATGTCC 58.563 41.667 11.73 8.68 31.53 4.02
813 1000 1.285023 CGGCCCTTATCCGTACTCG 59.715 63.158 0.00 0.00 41.85 4.18
848 1040 1.384222 CGCCTCCCATTTAAGCCACC 61.384 60.000 0.00 0.00 0.00 4.61
849 1041 0.033109 GCCTCCCATTTAAGCCACCT 60.033 55.000 0.00 0.00 0.00 4.00
851 1043 1.410224 CCTCCCATTTAAGCCACCTCC 60.410 57.143 0.00 0.00 0.00 4.30
852 1044 0.254747 TCCCATTTAAGCCACCTCCG 59.745 55.000 0.00 0.00 0.00 4.63
853 1045 1.384222 CCCATTTAAGCCACCTCCGC 61.384 60.000 0.00 0.00 0.00 5.54
855 1047 0.679640 CATTTAAGCCACCTCCGCCA 60.680 55.000 0.00 0.00 0.00 5.69
856 1048 0.679960 ATTTAAGCCACCTCCGCCAC 60.680 55.000 0.00 0.00 0.00 5.01
858 1050 2.180159 TTAAGCCACCTCCGCCACTC 62.180 60.000 0.00 0.00 0.00 3.51
863 1055 4.640690 ACCTCCGCCACTCCCACT 62.641 66.667 0.00 0.00 0.00 4.00
864 1056 3.775654 CCTCCGCCACTCCCACTC 61.776 72.222 0.00 0.00 0.00 3.51
935 1230 0.541296 AGCAGCCTGGTTGCATTTCT 60.541 50.000 32.46 12.72 42.09 2.52
974 1269 2.818132 GGCTGCTAGCAGATCCGT 59.182 61.111 41.87 0.00 44.75 4.69
990 1285 2.310233 CGTGACTCCTTGTGCGTGG 61.310 63.158 0.00 0.00 0.00 4.94
1005 1300 0.179134 CGTGGGAGTTCGAGATGGAC 60.179 60.000 0.00 0.00 0.00 4.02
1113 1408 1.765657 GAGGGAGAGGAGGCAGCAT 60.766 63.158 0.00 0.00 0.00 3.79
1182 1477 1.652947 TCTCCAACCCTGTAAGACCC 58.347 55.000 0.00 0.00 34.07 4.46
1183 1478 1.132657 TCTCCAACCCTGTAAGACCCA 60.133 52.381 0.00 0.00 34.07 4.51
1184 1479 1.003233 CTCCAACCCTGTAAGACCCAC 59.997 57.143 0.00 0.00 34.07 4.61
1190 1485 2.227194 CCCTGTAAGACCCACAAACAC 58.773 52.381 0.00 0.00 34.07 3.32
1204 1499 5.710099 CCCACAAACACTACTCCATATGTTT 59.290 40.000 1.24 0.00 44.08 2.83
1235 1532 8.825667 TTGTTTCCCTTTTTACTGAATAATGC 57.174 30.769 0.00 0.00 0.00 3.56
1253 1556 8.480643 AATAATGCGATACTTAGTTAGATGCC 57.519 34.615 0.00 0.00 0.00 4.40
1263 1566 6.615617 ACTTAGTTAGATGCCTCTCTCCATA 58.384 40.000 0.00 0.00 32.66 2.74
1265 1568 4.156477 AGTTAGATGCCTCTCTCCATACC 58.844 47.826 0.00 0.00 32.66 2.73
1266 1569 2.783379 AGATGCCTCTCTCCATACCA 57.217 50.000 0.00 0.00 0.00 3.25
1267 1570 3.272716 AGATGCCTCTCTCCATACCAT 57.727 47.619 0.00 0.00 0.00 3.55
1268 1571 4.410481 AGATGCCTCTCTCCATACCATA 57.590 45.455 0.00 0.00 0.00 2.74
1269 1572 4.093011 AGATGCCTCTCTCCATACCATAC 58.907 47.826 0.00 0.00 0.00 2.39
1323 1647 6.970484 AGAAGATGAGCACGTTTAATTGTTT 58.030 32.000 0.00 0.00 0.00 2.83
1347 1671 4.340666 TGAATTCTTTTAGTGGCAACTGCA 59.659 37.500 3.21 0.00 44.36 4.41
1350 1674 2.030007 TCTTTTAGTGGCAACTGCATGC 60.030 45.455 11.82 11.82 45.67 4.06
1423 1749 9.830186 ATTCAGTATCCACCACTATAGAATAGT 57.170 33.333 6.78 0.00 0.00 2.12
1425 1751 9.961264 TCAGTATCCACCACTATAGAATAGTAG 57.039 37.037 6.78 0.00 0.00 2.57
1426 1752 9.742144 CAGTATCCACCACTATAGAATAGTAGT 57.258 37.037 6.78 0.00 0.00 2.73
1430 1756 9.962809 ATCCACCACTATAGAATAGTAGTACTC 57.037 37.037 5.96 0.00 30.37 2.59
1431 1757 8.381636 TCCACCACTATAGAATAGTAGTACTCC 58.618 40.741 5.96 0.00 30.37 3.85
1432 1758 7.611079 CCACCACTATAGAATAGTAGTACTCCC 59.389 44.444 5.96 0.00 30.37 4.30
1433 1759 8.384718 CACCACTATAGAATAGTAGTACTCCCT 58.615 40.741 5.96 5.32 30.37 4.20
1434 1760 8.605065 ACCACTATAGAATAGTAGTACTCCCTC 58.395 40.741 5.96 2.36 30.37 4.30
1435 1761 8.048514 CCACTATAGAATAGTAGTACTCCCTCC 58.951 44.444 5.96 0.00 30.37 4.30
1436 1762 7.765360 CACTATAGAATAGTAGTACTCCCTCCG 59.235 44.444 5.96 0.00 30.37 4.63
1437 1763 6.700845 ATAGAATAGTAGTACTCCCTCCGT 57.299 41.667 5.96 0.00 0.00 4.69
1438 1764 7.805083 ATAGAATAGTAGTACTCCCTCCGTA 57.195 40.000 5.96 0.00 0.00 4.02
1439 1765 6.506538 AGAATAGTAGTACTCCCTCCGTAA 57.493 41.667 5.96 0.00 0.00 3.18
1440 1766 6.904626 AGAATAGTAGTACTCCCTCCGTAAA 58.095 40.000 5.96 0.00 0.00 2.01
1441 1767 6.770303 AGAATAGTAGTACTCCCTCCGTAAAC 59.230 42.308 5.96 0.00 0.00 2.01
1442 1768 4.582973 AGTAGTACTCCCTCCGTAAACT 57.417 45.455 0.00 0.00 0.00 2.66
1443 1769 5.700402 AGTAGTACTCCCTCCGTAAACTA 57.300 43.478 0.00 0.00 0.00 2.24
1444 1770 6.067217 AGTAGTACTCCCTCCGTAAACTAA 57.933 41.667 0.00 0.00 0.00 2.24
1445 1771 6.667661 AGTAGTACTCCCTCCGTAAACTAAT 58.332 40.000 0.00 0.00 0.00 1.73
1446 1772 7.806180 AGTAGTACTCCCTCCGTAAACTAATA 58.194 38.462 0.00 0.00 0.00 0.98
1447 1773 8.443979 AGTAGTACTCCCTCCGTAAACTAATAT 58.556 37.037 0.00 0.00 0.00 1.28
1448 1774 9.726438 GTAGTACTCCCTCCGTAAACTAATATA 57.274 37.037 0.00 0.00 0.00 0.86
1450 1776 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1451 1777 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1452 1778 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1453 1779 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1454 1780 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1455 1781 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1456 1782 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1457 1783 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1458 1784 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1459 1785 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1460 1786 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1474 1800 9.654663 AAGAGCGTTTAGATCACTATTTTTAGT 57.345 29.630 0.00 0.00 37.82 2.24
1475 1801 9.088512 AGAGCGTTTAGATCACTATTTTTAGTG 57.911 33.333 6.78 6.78 46.52 2.74
1489 1815 9.654663 ACTATTTTTAGTGATCTAAACGCTCTT 57.345 29.630 0.00 0.00 43.20 2.85
1506 1832 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1507 1833 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1508 1834 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1509 1835 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1548 1881 9.872684 ATAGTCCTTTCCATCACATGAAATATT 57.127 29.630 0.00 0.00 0.00 1.28
1651 2020 5.106038 CCTCATAAACAGTGACGTAGGTACA 60.106 44.000 0.00 0.00 0.00 2.90
1723 2100 6.536582 CGATGAGATGGACAACTGAAATTAGT 59.463 38.462 0.00 0.00 0.00 2.24
1737 2121 8.475331 ACTGAAATTAGTTATTGGTACAGTCG 57.525 34.615 0.00 0.00 42.39 4.18
1763 2147 0.534203 TTTTGACCTCACGTCCAGGC 60.534 55.000 9.63 4.36 41.18 4.85
1772 2156 1.335810 TCACGTCCAGGCGTACATATC 59.664 52.381 8.37 0.00 43.83 1.63
1787 2236 6.089551 GCGTACATATCTACGAGCATTGAAAT 59.910 38.462 13.84 0.00 41.75 2.17
1877 2661 3.588955 CATTTGAAAGGCCAAGCTAACC 58.411 45.455 5.01 0.00 0.00 2.85
1955 2743 9.725019 TCAAATTACCAAGAGTAGGCATATATG 57.275 33.333 8.45 8.45 30.92 1.78
2002 2792 4.324254 GGTGACAAATGGAACTCAGGGATA 60.324 45.833 0.00 0.00 0.00 2.59
2087 2972 8.604640 ATGCAGATAGTATGAAGTGAGATTTG 57.395 34.615 0.00 0.00 0.00 2.32
2145 3030 9.113876 GATCCAACTAAGTACGAAACATTTTTG 57.886 33.333 0.00 0.00 0.00 2.44
2157 3043 8.690680 ACGAAACATTTTTGTTTTAGCTAACA 57.309 26.923 5.45 1.19 41.49 2.41
2169 3055 7.653647 TGTTTTAGCTAACAATGTACAAAGGG 58.346 34.615 5.45 0.00 35.22 3.95
2178 3064 9.620660 CTAACAATGTACAAAGGGTGAAAATAC 57.379 33.333 0.00 0.00 0.00 1.89
2179 3065 6.674066 ACAATGTACAAAGGGTGAAAATACG 58.326 36.000 0.00 0.00 0.00 3.06
2296 3326 8.738645 ACTCTCTGTCAAGTAGAAACAAAAAT 57.261 30.769 0.00 0.00 0.00 1.82
2389 3421 3.683802 TCATGTGTGGTTATGTGCATCA 58.316 40.909 0.00 0.00 0.00 3.07
2586 3621 5.412904 CCTAGATGAGTCTGCGTCATACATA 59.587 44.000 0.00 0.00 34.69 2.29
2642 3677 0.613292 AGGAGGAGCTCAGCGAAAGA 60.613 55.000 17.19 0.00 31.08 2.52
2685 3720 2.904866 GGTGCTTCAACGCCCACA 60.905 61.111 0.00 0.00 33.92 4.17
2747 3782 2.686915 GAGAGAAACATTGGGAGGCATG 59.313 50.000 0.00 0.00 0.00 4.06
2781 3816 1.137404 GGTGCGGCAACATGATGAC 59.863 57.895 14.23 2.34 0.00 3.06
2951 3986 6.886459 TCCCAGGTTCGTACATATATAGGTAC 59.114 42.308 22.09 22.09 39.36 3.34
2968 4006 3.187700 GGTACAGCCTTTCACATCTACG 58.812 50.000 0.00 0.00 0.00 3.51
3014 4339 6.714810 TGTTAAAGATAAGGCACACATGAGTT 59.285 34.615 0.00 0.00 0.00 3.01
3026 4351 6.316140 GGCACACATGAGTTCAAGTATTCATA 59.684 38.462 0.00 0.00 0.00 2.15
3201 4533 6.381481 AAGTGATGCATGTACAATATGTGG 57.619 37.500 2.46 0.00 0.00 4.17
3222 4554 6.071447 TGTGGAAAATGTGGAATCGATGATTT 60.071 34.615 0.00 0.00 31.89 2.17
3267 4600 1.298953 TGGGGAAAGCTAGCCAAGAT 58.701 50.000 12.13 0.00 0.00 2.40
3303 4638 9.353431 TGACATTAGATAAAACATGTGCCATAT 57.647 29.630 0.00 0.00 29.81 1.78
3363 4700 6.040166 TCCACCCGCTAGAACTTAAGTATTAG 59.960 42.308 8.92 13.81 0.00 1.73
3561 4900 7.020010 GCATAGATGTTTCAAGTGTTTCTGAG 58.980 38.462 0.00 0.00 0.00 3.35
3591 4930 5.363101 AGAGCATTGGTATGATAGTGTGTG 58.637 41.667 0.00 0.00 33.37 3.82
3759 5159 3.616956 TGCTCTTTGATCTACCACCTG 57.383 47.619 0.00 0.00 0.00 4.00
3760 5160 2.237143 TGCTCTTTGATCTACCACCTGG 59.763 50.000 0.00 0.00 42.17 4.45
3795 5195 2.276732 CCATGTCTGGTTGTCAAGGT 57.723 50.000 0.00 0.00 37.79 3.50
3802 5202 2.165437 TCTGGTTGTCAAGGTTTGTTGC 59.835 45.455 0.00 0.00 0.00 4.17
3877 5277 3.286329 TCTGGCTATGTGATTGCATGT 57.714 42.857 0.00 0.00 32.56 3.21
3901 5303 3.940852 GCAAGCCCAAAAATATCCCAAAG 59.059 43.478 0.00 0.00 0.00 2.77
3920 5322 6.463360 CCAAAGTTGCCCAAGTGTAATTTAT 58.537 36.000 0.00 0.00 0.00 1.40
3969 5371 6.900568 TTTTTGCTCCATTTAATTATGGCG 57.099 33.333 2.73 0.00 43.94 5.69
4005 5407 9.865484 GAAAAAGAGCGGTAAATACTATGAATC 57.135 33.333 0.00 0.00 0.00 2.52
4098 5500 5.684704 TGAAGTTTGTTCTCTCAACATCCT 58.315 37.500 0.00 0.00 0.00 3.24
4107 5509 6.944290 TGTTCTCTCAACATCCTGATTTTGAT 59.056 34.615 8.67 0.00 37.03 2.57
4200 5616 5.618236 AGATGTGGATATCATGTCAAGGTG 58.382 41.667 4.83 0.00 0.00 4.00
4246 5703 8.251750 TGATTAAAGTATCAAACGAAGGAGTG 57.748 34.615 0.00 0.00 31.82 3.51
4277 5734 4.381079 GGGTAAGACTCAGCAAGTACTCTG 60.381 50.000 0.00 0.00 38.74 3.35
4284 5741 5.013547 ACTCAGCAAGTACTCTGTATGTCT 58.986 41.667 10.47 0.00 36.07 3.41
4308 5765 9.236006 TCTTTCCAAATTAGAGAAAGAGATTGG 57.764 33.333 17.17 0.00 46.43 3.16
4309 5766 7.396540 TTCCAAATTAGAGAAAGAGATTGGC 57.603 36.000 0.00 0.00 36.79 4.52
4322 5780 1.211457 AGATTGGCGAAATGAGAGGCT 59.789 47.619 0.00 0.00 0.00 4.58
4330 5788 3.812053 GCGAAATGAGAGGCTGATGTTAT 59.188 43.478 0.00 0.00 0.00 1.89
4388 5846 1.266178 GATGGGTCTTGGTTTTGGGG 58.734 55.000 0.00 0.00 0.00 4.96
4476 5935 3.169908 GGGCCAAAAGATTACCAGGAAA 58.830 45.455 4.39 0.00 0.00 3.13
4483 5942 6.040391 CCAAAAGATTACCAGGAAAGAACACA 59.960 38.462 0.00 0.00 0.00 3.72
4484 5943 6.635030 AAAGATTACCAGGAAAGAACACAC 57.365 37.500 0.00 0.00 0.00 3.82
4487 5946 0.923358 ACCAGGAAAGAACACACCCA 59.077 50.000 0.00 0.00 0.00 4.51
4491 5950 3.005791 CCAGGAAAGAACACACCCATTTC 59.994 47.826 0.00 0.00 0.00 2.17
4532 5991 1.267806 AGCGAAAGTGATTGGTTGCTG 59.732 47.619 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.511321 TGTACTAAGTGAGTGCCAATTAATTTG 58.489 33.333 0.00 0.00 39.89 2.32
9 10 8.630054 TGTACTAAGTGAGTGCCAATTAATTT 57.370 30.769 0.00 0.00 39.89 1.82
10 11 8.807948 ATGTACTAAGTGAGTGCCAATTAATT 57.192 30.769 0.00 0.00 39.89 1.40
12 13 9.899661 AATATGTACTAAGTGAGTGCCAATTAA 57.100 29.630 0.00 0.00 39.89 1.40
13 14 9.899661 AAATATGTACTAAGTGAGTGCCAATTA 57.100 29.630 0.00 0.00 39.89 1.40
14 15 8.807948 AAATATGTACTAAGTGAGTGCCAATT 57.192 30.769 0.00 0.00 39.89 2.32
15 16 9.547753 CTAAATATGTACTAAGTGAGTGCCAAT 57.452 33.333 0.00 0.00 39.89 3.16
16 17 8.755028 TCTAAATATGTACTAAGTGAGTGCCAA 58.245 33.333 0.00 0.00 39.89 4.52
17 18 8.301252 TCTAAATATGTACTAAGTGAGTGCCA 57.699 34.615 0.00 0.00 39.89 4.92
18 19 8.630917 TCTCTAAATATGTACTAAGTGAGTGCC 58.369 37.037 0.00 0.00 39.89 5.01
19 20 9.672086 CTCTCTAAATATGTACTAAGTGAGTGC 57.328 37.037 0.00 0.00 39.39 4.40
131 132 8.844244 CCTTGTAGAGCTGCAAATTATAATCTT 58.156 33.333 1.02 0.00 34.90 2.40
132 133 7.040823 GCCTTGTAGAGCTGCAAATTATAATCT 60.041 37.037 1.02 0.00 34.90 2.40
133 134 7.080724 GCCTTGTAGAGCTGCAAATTATAATC 58.919 38.462 1.02 0.00 34.90 1.75
134 135 6.015940 GGCCTTGTAGAGCTGCAAATTATAAT 60.016 38.462 1.02 0.00 34.90 1.28
135 136 5.299279 GGCCTTGTAGAGCTGCAAATTATAA 59.701 40.000 1.02 0.00 34.90 0.98
136 137 4.821805 GGCCTTGTAGAGCTGCAAATTATA 59.178 41.667 1.02 0.00 34.90 0.98
137 138 3.633986 GGCCTTGTAGAGCTGCAAATTAT 59.366 43.478 1.02 0.00 34.90 1.28
138 139 3.016736 GGCCTTGTAGAGCTGCAAATTA 58.983 45.455 1.02 0.00 34.90 1.40
139 140 1.821136 GGCCTTGTAGAGCTGCAAATT 59.179 47.619 1.02 0.00 34.90 1.82
140 141 1.272092 TGGCCTTGTAGAGCTGCAAAT 60.272 47.619 3.32 0.00 34.90 2.32
141 142 0.110295 TGGCCTTGTAGAGCTGCAAA 59.890 50.000 3.32 0.00 34.90 3.68
142 143 0.606401 GTGGCCTTGTAGAGCTGCAA 60.606 55.000 3.32 1.24 34.18 4.08
143 144 1.003355 GTGGCCTTGTAGAGCTGCA 60.003 57.895 3.32 0.00 0.00 4.41
144 145 0.537188 TAGTGGCCTTGTAGAGCTGC 59.463 55.000 3.32 0.00 0.00 5.25
145 146 2.028112 TGTTAGTGGCCTTGTAGAGCTG 60.028 50.000 3.32 0.00 0.00 4.24
146 147 2.028020 GTGTTAGTGGCCTTGTAGAGCT 60.028 50.000 3.32 0.00 0.00 4.09
147 148 2.347731 GTGTTAGTGGCCTTGTAGAGC 58.652 52.381 3.32 0.00 0.00 4.09
148 149 2.301870 TGGTGTTAGTGGCCTTGTAGAG 59.698 50.000 3.32 0.00 0.00 2.43
149 150 2.331166 TGGTGTTAGTGGCCTTGTAGA 58.669 47.619 3.32 0.00 0.00 2.59
150 151 2.851263 TGGTGTTAGTGGCCTTGTAG 57.149 50.000 3.32 0.00 0.00 2.74
151 152 3.681593 GATTGGTGTTAGTGGCCTTGTA 58.318 45.455 3.32 0.00 0.00 2.41
152 153 2.514803 GATTGGTGTTAGTGGCCTTGT 58.485 47.619 3.32 0.00 0.00 3.16
153 154 1.468520 CGATTGGTGTTAGTGGCCTTG 59.531 52.381 3.32 0.00 0.00 3.61
154 155 1.349688 TCGATTGGTGTTAGTGGCCTT 59.650 47.619 3.32 0.00 0.00 4.35
155 156 0.981183 TCGATTGGTGTTAGTGGCCT 59.019 50.000 3.32 0.00 0.00 5.19
156 157 1.066430 TCTCGATTGGTGTTAGTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
157 158 2.380084 TCTCGATTGGTGTTAGTGGC 57.620 50.000 0.00 0.00 0.00 5.01
158 159 6.978343 TTTTATCTCGATTGGTGTTAGTGG 57.022 37.500 0.00 0.00 0.00 4.00
159 160 7.910162 CCAATTTTATCTCGATTGGTGTTAGTG 59.090 37.037 3.95 0.00 42.99 2.74
160 161 7.985476 CCAATTTTATCTCGATTGGTGTTAGT 58.015 34.615 3.95 0.00 42.99 2.24
168 169 6.683974 ACCTCACCAATTTTATCTCGATTG 57.316 37.500 0.00 0.00 0.00 2.67
169 170 7.703058 AAACCTCACCAATTTTATCTCGATT 57.297 32.000 0.00 0.00 0.00 3.34
170 171 7.282450 GGTAAACCTCACCAATTTTATCTCGAT 59.718 37.037 0.00 0.00 36.01 3.59
171 172 6.596497 GGTAAACCTCACCAATTTTATCTCGA 59.404 38.462 0.00 0.00 36.01 4.04
172 173 6.183360 GGGTAAACCTCACCAATTTTATCTCG 60.183 42.308 0.00 0.00 37.84 4.04
173 174 6.096423 GGGGTAAACCTCACCAATTTTATCTC 59.904 42.308 0.00 0.00 37.84 2.75
174 175 5.955959 GGGGTAAACCTCACCAATTTTATCT 59.044 40.000 0.00 0.00 37.84 1.98
175 176 5.163591 CGGGGTAAACCTCACCAATTTTATC 60.164 44.000 0.00 0.00 35.80 1.75
176 177 4.707934 CGGGGTAAACCTCACCAATTTTAT 59.292 41.667 0.00 0.00 35.80 1.40
177 178 4.080687 CGGGGTAAACCTCACCAATTTTA 58.919 43.478 0.00 0.00 35.80 1.52
178 179 2.894765 CGGGGTAAACCTCACCAATTTT 59.105 45.455 0.00 0.00 35.80 1.82
179 180 2.158430 ACGGGGTAAACCTCACCAATTT 60.158 45.455 0.00 0.00 35.80 1.82
180 181 1.426215 ACGGGGTAAACCTCACCAATT 59.574 47.619 0.00 0.00 35.80 2.32
181 182 1.069775 ACGGGGTAAACCTCACCAAT 58.930 50.000 0.00 0.00 35.80 3.16
182 183 1.727062 TACGGGGTAAACCTCACCAA 58.273 50.000 0.00 0.00 35.80 3.67
183 184 1.955451 ATACGGGGTAAACCTCACCA 58.045 50.000 0.00 0.00 35.80 4.17
184 185 3.742327 GCTAATACGGGGTAAACCTCACC 60.742 52.174 0.00 0.00 35.80 4.02
185 186 3.118665 TGCTAATACGGGGTAAACCTCAC 60.119 47.826 0.00 0.00 35.80 3.51
186 187 3.106054 TGCTAATACGGGGTAAACCTCA 58.894 45.455 0.00 0.00 35.80 3.86
187 188 3.825143 TGCTAATACGGGGTAAACCTC 57.175 47.619 0.00 0.00 40.03 3.85
188 189 3.370846 GGTTGCTAATACGGGGTAAACCT 60.371 47.826 0.00 0.00 40.03 3.50
189 190 2.945008 GGTTGCTAATACGGGGTAAACC 59.055 50.000 0.00 0.00 39.11 3.27
190 191 2.609002 CGGTTGCTAATACGGGGTAAAC 59.391 50.000 0.00 0.00 0.00 2.01
191 192 2.499289 TCGGTTGCTAATACGGGGTAAA 59.501 45.455 0.00 0.00 0.00 2.01
192 193 2.101249 CTCGGTTGCTAATACGGGGTAA 59.899 50.000 0.00 0.00 0.00 2.85
193 194 1.682854 CTCGGTTGCTAATACGGGGTA 59.317 52.381 0.00 0.00 0.00 3.69
194 195 0.462789 CTCGGTTGCTAATACGGGGT 59.537 55.000 0.00 0.00 0.00 4.95
195 196 0.249741 CCTCGGTTGCTAATACGGGG 60.250 60.000 0.00 0.00 40.99 5.73
196 197 0.748450 TCCTCGGTTGCTAATACGGG 59.252 55.000 0.00 0.00 0.00 5.28
197 198 1.135527 TGTCCTCGGTTGCTAATACGG 59.864 52.381 0.00 0.00 0.00 4.02
198 199 2.572191 TGTCCTCGGTTGCTAATACG 57.428 50.000 0.00 0.00 0.00 3.06
199 200 6.589139 GGTATTATGTCCTCGGTTGCTAATAC 59.411 42.308 0.00 0.00 33.18 1.89
200 201 6.495872 AGGTATTATGTCCTCGGTTGCTAATA 59.504 38.462 0.00 0.00 0.00 0.98
201 202 5.307196 AGGTATTATGTCCTCGGTTGCTAAT 59.693 40.000 0.00 0.00 0.00 1.73
202 203 4.652421 AGGTATTATGTCCTCGGTTGCTAA 59.348 41.667 0.00 0.00 0.00 3.09
203 204 4.220724 AGGTATTATGTCCTCGGTTGCTA 58.779 43.478 0.00 0.00 0.00 3.49
204 205 3.039011 AGGTATTATGTCCTCGGTTGCT 58.961 45.455 0.00 0.00 0.00 3.91
205 206 3.391049 GAGGTATTATGTCCTCGGTTGC 58.609 50.000 0.00 0.00 40.36 4.17
212 213 4.202493 TGCATGCATGAGGTATTATGTCCT 60.202 41.667 30.64 0.00 36.70 3.85
213 214 4.074259 TGCATGCATGAGGTATTATGTCC 58.926 43.478 30.64 7.94 0.00 4.02
214 215 5.892160 ATGCATGCATGAGGTATTATGTC 57.108 39.130 31.74 8.14 35.03 3.06
230 231 1.671328 CTTCTCACTCCAGCATGCATG 59.329 52.381 22.70 22.70 31.97 4.06
231 232 1.408405 CCTTCTCACTCCAGCATGCAT 60.408 52.381 21.98 1.69 31.97 3.96
232 233 0.035725 CCTTCTCACTCCAGCATGCA 60.036 55.000 21.98 0.00 31.97 3.96
233 234 0.035630 ACCTTCTCACTCCAGCATGC 60.036 55.000 10.51 10.51 31.97 4.06
234 235 2.082231 CAACCTTCTCACTCCAGCATG 58.918 52.381 0.00 0.00 0.00 4.06
235 236 1.004044 CCAACCTTCTCACTCCAGCAT 59.996 52.381 0.00 0.00 0.00 3.79
236 237 0.397941 CCAACCTTCTCACTCCAGCA 59.602 55.000 0.00 0.00 0.00 4.41
237 238 0.398318 ACCAACCTTCTCACTCCAGC 59.602 55.000 0.00 0.00 0.00 4.85
238 239 2.880890 CAAACCAACCTTCTCACTCCAG 59.119 50.000 0.00 0.00 0.00 3.86
239 240 2.930950 CAAACCAACCTTCTCACTCCA 58.069 47.619 0.00 0.00 0.00 3.86
240 241 1.609072 GCAAACCAACCTTCTCACTCC 59.391 52.381 0.00 0.00 0.00 3.85
241 242 2.297701 TGCAAACCAACCTTCTCACTC 58.702 47.619 0.00 0.00 0.00 3.51
242 243 2.435372 TGCAAACCAACCTTCTCACT 57.565 45.000 0.00 0.00 0.00 3.41
243 244 2.863704 GCATGCAAACCAACCTTCTCAC 60.864 50.000 14.21 0.00 0.00 3.51
244 245 1.340889 GCATGCAAACCAACCTTCTCA 59.659 47.619 14.21 0.00 0.00 3.27
245 246 1.340889 TGCATGCAAACCAACCTTCTC 59.659 47.619 20.30 0.00 0.00 2.87
246 247 1.412079 TGCATGCAAACCAACCTTCT 58.588 45.000 20.30 0.00 0.00 2.85
247 248 2.288948 TGATGCATGCAAACCAACCTTC 60.289 45.455 26.68 14.53 0.00 3.46
248 249 1.693062 TGATGCATGCAAACCAACCTT 59.307 42.857 26.68 4.06 0.00 3.50
249 250 1.001181 GTGATGCATGCAAACCAACCT 59.999 47.619 26.68 4.93 0.00 3.50
250 251 1.270199 TGTGATGCATGCAAACCAACC 60.270 47.619 26.68 12.01 0.00 3.77
251 252 2.151881 TGTGATGCATGCAAACCAAC 57.848 45.000 26.68 17.63 0.00 3.77
252 253 4.532314 TTATGTGATGCATGCAAACCAA 57.468 36.364 26.68 17.74 38.47 3.67
253 254 4.739587 ATTATGTGATGCATGCAAACCA 57.260 36.364 26.68 20.19 38.47 3.67
254 255 5.005971 GTGAATTATGTGATGCATGCAAACC 59.994 40.000 26.68 16.86 38.47 3.27
255 256 5.577554 TGTGAATTATGTGATGCATGCAAAC 59.422 36.000 26.68 24.56 38.47 2.93
256 257 5.721232 TGTGAATTATGTGATGCATGCAAA 58.279 33.333 26.68 13.77 38.47 3.68
257 258 5.326200 TGTGAATTATGTGATGCATGCAA 57.674 34.783 26.68 8.62 38.47 4.08
258 259 4.985538 TGTGAATTATGTGATGCATGCA 57.014 36.364 25.04 25.04 38.47 3.96
259 260 7.933728 TTAATGTGAATTATGTGATGCATGC 57.066 32.000 11.82 11.82 38.47 4.06
260 261 9.685828 TGATTAATGTGAATTATGTGATGCATG 57.314 29.630 2.46 0.00 38.47 4.06
262 263 9.518906 GTTGATTAATGTGAATTATGTGATGCA 57.481 29.630 0.00 0.00 0.00 3.96
263 264 9.740239 AGTTGATTAATGTGAATTATGTGATGC 57.260 29.630 0.00 0.00 0.00 3.91
274 275 9.653287 CACTCCTAGTTAGTTGATTAATGTGAA 57.347 33.333 0.00 0.00 0.00 3.18
275 276 9.031537 TCACTCCTAGTTAGTTGATTAATGTGA 57.968 33.333 0.00 0.00 0.00 3.58
276 277 9.653287 TTCACTCCTAGTTAGTTGATTAATGTG 57.347 33.333 0.00 0.00 0.00 3.21
282 283 9.628500 AACTTTTTCACTCCTAGTTAGTTGATT 57.372 29.630 0.00 0.00 0.00 2.57
283 284 9.057089 CAACTTTTTCACTCCTAGTTAGTTGAT 57.943 33.333 0.00 0.00 41.29 2.57
284 285 8.044908 ACAACTTTTTCACTCCTAGTTAGTTGA 58.955 33.333 15.53 3.96 41.29 3.18
285 286 8.209917 ACAACTTTTTCACTCCTAGTTAGTTG 57.790 34.615 0.00 0.00 43.23 3.16
289 290 9.841295 ACAATACAACTTTTTCACTCCTAGTTA 57.159 29.630 0.00 0.00 0.00 2.24
290 291 8.747538 ACAATACAACTTTTTCACTCCTAGTT 57.252 30.769 0.00 0.00 0.00 2.24
291 292 8.621286 CAACAATACAACTTTTTCACTCCTAGT 58.379 33.333 0.00 0.00 0.00 2.57
292 293 8.621286 ACAACAATACAACTTTTTCACTCCTAG 58.379 33.333 0.00 0.00 0.00 3.02
293 294 8.402472 CACAACAATACAACTTTTTCACTCCTA 58.598 33.333 0.00 0.00 0.00 2.94
294 295 7.257722 CACAACAATACAACTTTTTCACTCCT 58.742 34.615 0.00 0.00 0.00 3.69
295 296 6.019881 GCACAACAATACAACTTTTTCACTCC 60.020 38.462 0.00 0.00 0.00 3.85
296 297 6.291060 CGCACAACAATACAACTTTTTCACTC 60.291 38.462 0.00 0.00 0.00 3.51
297 298 5.514914 CGCACAACAATACAACTTTTTCACT 59.485 36.000 0.00 0.00 0.00 3.41
298 299 5.287513 ACGCACAACAATACAACTTTTTCAC 59.712 36.000 0.00 0.00 0.00 3.18
299 300 5.403246 ACGCACAACAATACAACTTTTTCA 58.597 33.333 0.00 0.00 0.00 2.69
300 301 5.942325 ACGCACAACAATACAACTTTTTC 57.058 34.783 0.00 0.00 0.00 2.29
301 302 5.864474 TGAACGCACAACAATACAACTTTTT 59.136 32.000 0.00 0.00 0.00 1.94
302 303 5.403246 TGAACGCACAACAATACAACTTTT 58.597 33.333 0.00 0.00 0.00 2.27
303 304 4.987832 TGAACGCACAACAATACAACTTT 58.012 34.783 0.00 0.00 0.00 2.66
304 305 4.624336 TGAACGCACAACAATACAACTT 57.376 36.364 0.00 0.00 0.00 2.66
305 306 4.334203 TCTTGAACGCACAACAATACAACT 59.666 37.500 0.00 0.00 0.00 3.16
306 307 4.593157 TCTTGAACGCACAACAATACAAC 58.407 39.130 0.00 0.00 0.00 3.32
307 308 4.884458 TCTTGAACGCACAACAATACAA 57.116 36.364 0.00 0.00 0.00 2.41
308 309 4.884458 TTCTTGAACGCACAACAATACA 57.116 36.364 0.00 0.00 0.00 2.29
309 310 6.561945 TTTTTCTTGAACGCACAACAATAC 57.438 33.333 0.00 0.00 0.00 1.89
332 333 9.337091 GCTTGACGTGTTAATTAATGTGTATTT 57.663 29.630 0.31 0.00 0.00 1.40
333 334 7.690637 CGCTTGACGTGTTAATTAATGTGTATT 59.309 33.333 0.31 0.00 36.87 1.89
334 335 7.063662 TCGCTTGACGTGTTAATTAATGTGTAT 59.936 33.333 0.31 0.00 44.19 2.29
335 336 6.365518 TCGCTTGACGTGTTAATTAATGTGTA 59.634 34.615 0.31 0.00 44.19 2.90
336 337 5.177881 TCGCTTGACGTGTTAATTAATGTGT 59.822 36.000 0.31 0.44 44.19 3.72
337 338 5.613812 TCGCTTGACGTGTTAATTAATGTG 58.386 37.500 0.31 0.00 44.19 3.21
338 339 5.636121 TCTCGCTTGACGTGTTAATTAATGT 59.364 36.000 0.31 1.15 44.19 2.71
339 340 6.089920 TCTCGCTTGACGTGTTAATTAATG 57.910 37.500 0.31 0.00 44.19 1.90
340 341 6.588756 TCTTCTCGCTTGACGTGTTAATTAAT 59.411 34.615 0.31 0.00 44.19 1.40
341 342 5.921976 TCTTCTCGCTTGACGTGTTAATTAA 59.078 36.000 0.00 0.00 44.19 1.40
342 343 5.463286 TCTTCTCGCTTGACGTGTTAATTA 58.537 37.500 0.00 0.00 44.19 1.40
343 344 4.304110 TCTTCTCGCTTGACGTGTTAATT 58.696 39.130 0.00 0.00 44.19 1.40
344 345 3.909430 TCTTCTCGCTTGACGTGTTAAT 58.091 40.909 0.00 0.00 44.19 1.40
345 346 3.358707 TCTTCTCGCTTGACGTGTTAA 57.641 42.857 0.00 0.00 44.19 2.01
346 347 3.358707 TTCTTCTCGCTTGACGTGTTA 57.641 42.857 0.00 0.00 44.19 2.41
347 348 2.218953 TTCTTCTCGCTTGACGTGTT 57.781 45.000 0.00 0.00 44.19 3.32
348 349 2.218953 TTTCTTCTCGCTTGACGTGT 57.781 45.000 0.00 0.00 44.19 4.49
349 350 2.794910 TCTTTTCTTCTCGCTTGACGTG 59.205 45.455 0.00 0.00 44.19 4.49
350 351 2.795470 GTCTTTTCTTCTCGCTTGACGT 59.205 45.455 0.00 0.00 44.19 4.34
351 352 3.053455 AGTCTTTTCTTCTCGCTTGACG 58.947 45.455 0.00 0.00 45.62 4.35
352 353 5.224135 ACTAGTCTTTTCTTCTCGCTTGAC 58.776 41.667 0.00 0.00 0.00 3.18
353 354 5.455056 ACTAGTCTTTTCTTCTCGCTTGA 57.545 39.130 0.00 0.00 0.00 3.02
354 355 6.358762 CAAACTAGTCTTTTCTTCTCGCTTG 58.641 40.000 0.00 0.00 0.00 4.01
355 356 5.050023 GCAAACTAGTCTTTTCTTCTCGCTT 60.050 40.000 0.00 0.00 0.00 4.68
356 357 4.449405 GCAAACTAGTCTTTTCTTCTCGCT 59.551 41.667 0.00 0.00 0.00 4.93
357 358 4.211374 TGCAAACTAGTCTTTTCTTCTCGC 59.789 41.667 0.00 0.00 0.00 5.03
358 359 5.907197 TGCAAACTAGTCTTTTCTTCTCG 57.093 39.130 0.00 0.00 0.00 4.04
375 376 5.126222 TGGTCACTTAAGTCAATGTTGCAAA 59.874 36.000 4.77 0.00 0.00 3.68
376 377 4.642437 TGGTCACTTAAGTCAATGTTGCAA 59.358 37.500 4.77 0.00 0.00 4.08
377 378 4.203226 TGGTCACTTAAGTCAATGTTGCA 58.797 39.130 4.77 0.00 0.00 4.08
378 379 4.829064 TGGTCACTTAAGTCAATGTTGC 57.171 40.909 4.77 0.00 0.00 4.17
379 380 9.912634 AATTAATGGTCACTTAAGTCAATGTTG 57.087 29.630 4.77 0.00 0.00 3.33
385 386 9.880157 GGTAGTAATTAATGGTCACTTAAGTCA 57.120 33.333 4.77 1.21 0.00 3.41
389 390 9.675464 CCAAGGTAGTAATTAATGGTCACTTAA 57.325 33.333 0.00 0.00 0.00 1.85
390 391 8.828751 ACCAAGGTAGTAATTAATGGTCACTTA 58.171 33.333 0.00 0.00 34.78 2.24
391 392 7.696017 ACCAAGGTAGTAATTAATGGTCACTT 58.304 34.615 0.00 0.00 34.78 3.16
392 393 7.266905 ACCAAGGTAGTAATTAATGGTCACT 57.733 36.000 0.00 0.00 34.78 3.41
393 394 9.269453 GATACCAAGGTAGTAATTAATGGTCAC 57.731 37.037 5.10 0.00 40.08 3.67
394 395 9.220906 AGATACCAAGGTAGTAATTAATGGTCA 57.779 33.333 5.10 0.00 40.08 4.02
395 396 9.490379 CAGATACCAAGGTAGTAATTAATGGTC 57.510 37.037 5.10 0.00 40.08 4.02
396 397 8.999895 ACAGATACCAAGGTAGTAATTAATGGT 58.000 33.333 5.10 0.00 42.09 3.55
409 410 9.830186 AGACTCATATATTACAGATACCAAGGT 57.170 33.333 0.00 0.00 0.00 3.50
413 414 9.025041 CCACAGACTCATATATTACAGATACCA 57.975 37.037 0.00 0.00 0.00 3.25
414 415 7.976734 GCCACAGACTCATATATTACAGATACC 59.023 40.741 0.00 0.00 0.00 2.73
415 416 7.976734 GGCCACAGACTCATATATTACAGATAC 59.023 40.741 0.00 0.00 0.00 2.24
416 417 7.895962 AGGCCACAGACTCATATATTACAGATA 59.104 37.037 5.01 0.00 0.00 1.98
417 418 6.728164 AGGCCACAGACTCATATATTACAGAT 59.272 38.462 5.01 0.00 0.00 2.90
418 419 6.077993 AGGCCACAGACTCATATATTACAGA 58.922 40.000 5.01 0.00 0.00 3.41
419 420 6.352016 AGGCCACAGACTCATATATTACAG 57.648 41.667 5.01 0.00 0.00 2.74
420 421 6.099701 ACAAGGCCACAGACTCATATATTACA 59.900 38.462 5.01 0.00 0.00 2.41
421 422 6.525629 ACAAGGCCACAGACTCATATATTAC 58.474 40.000 5.01 0.00 0.00 1.89
422 423 6.747414 ACAAGGCCACAGACTCATATATTA 57.253 37.500 5.01 0.00 0.00 0.98
423 424 5.636903 ACAAGGCCACAGACTCATATATT 57.363 39.130 5.01 0.00 0.00 1.28
424 425 6.942163 ATACAAGGCCACAGACTCATATAT 57.058 37.500 5.01 0.00 0.00 0.86
425 426 7.849322 TTATACAAGGCCACAGACTCATATA 57.151 36.000 5.01 0.00 0.00 0.86
426 427 6.747414 TTATACAAGGCCACAGACTCATAT 57.253 37.500 5.01 0.00 0.00 1.78
427 428 6.553953 TTTATACAAGGCCACAGACTCATA 57.446 37.500 5.01 0.00 0.00 2.15
428 429 5.435686 TTTATACAAGGCCACAGACTCAT 57.564 39.130 5.01 0.00 0.00 2.90
429 430 4.901197 TTTATACAAGGCCACAGACTCA 57.099 40.909 5.01 0.00 0.00 3.41
430 431 6.759497 ATTTTTATACAAGGCCACAGACTC 57.241 37.500 5.01 0.00 0.00 3.36
431 432 9.561069 CTATATTTTTATACAAGGCCACAGACT 57.439 33.333 5.01 0.00 0.00 3.24
432 433 9.555727 TCTATATTTTTATACAAGGCCACAGAC 57.444 33.333 5.01 0.00 0.00 3.51
433 434 9.778741 CTCTATATTTTTATACAAGGCCACAGA 57.221 33.333 5.01 0.00 0.00 3.41
434 435 9.003658 CCTCTATATTTTTATACAAGGCCACAG 57.996 37.037 5.01 0.00 0.00 3.66
435 436 7.942341 CCCTCTATATTTTTATACAAGGCCACA 59.058 37.037 5.01 0.00 0.00 4.17
436 437 8.161425 TCCCTCTATATTTTTATACAAGGCCAC 58.839 37.037 5.01 0.00 0.00 5.01
437 438 8.282801 TCCCTCTATATTTTTATACAAGGCCA 57.717 34.615 5.01 0.00 0.00 5.36
438 439 8.383947 ACTCCCTCTATATTTTTATACAAGGCC 58.616 37.037 0.00 0.00 0.00 5.19
492 493 9.816354 GCCCAAAAATACACAAATATAATGTCT 57.184 29.630 0.00 0.00 0.00 3.41
493 494 9.816354 AGCCCAAAAATACACAAATATAATGTC 57.184 29.630 0.00 0.00 0.00 3.06
496 497 9.830975 GGAAGCCCAAAAATACACAAATATAAT 57.169 29.630 0.00 0.00 0.00 1.28
497 498 7.976734 CGGAAGCCCAAAAATACACAAATATAA 59.023 33.333 0.00 0.00 0.00 0.98
498 499 7.416890 CCGGAAGCCCAAAAATACACAAATATA 60.417 37.037 0.00 0.00 0.00 0.86
499 500 6.337356 CGGAAGCCCAAAAATACACAAATAT 58.663 36.000 0.00 0.00 0.00 1.28
500 501 5.336849 CCGGAAGCCCAAAAATACACAAATA 60.337 40.000 0.00 0.00 0.00 1.40
501 502 4.562552 CCGGAAGCCCAAAAATACACAAAT 60.563 41.667 0.00 0.00 0.00 2.32
502 503 3.243907 CCGGAAGCCCAAAAATACACAAA 60.244 43.478 0.00 0.00 0.00 2.83
503 504 2.297597 CCGGAAGCCCAAAAATACACAA 59.702 45.455 0.00 0.00 0.00 3.33
504 505 1.889829 CCGGAAGCCCAAAAATACACA 59.110 47.619 0.00 0.00 0.00 3.72
505 506 1.403647 GCCGGAAGCCCAAAAATACAC 60.404 52.381 5.05 0.00 34.35 2.90
506 507 0.892063 GCCGGAAGCCCAAAAATACA 59.108 50.000 5.05 0.00 34.35 2.29
507 508 1.135112 CAGCCGGAAGCCCAAAAATAC 60.135 52.381 5.05 0.00 45.47 1.89
508 509 1.181786 CAGCCGGAAGCCCAAAAATA 58.818 50.000 5.05 0.00 45.47 1.40
509 510 1.543944 CCAGCCGGAAGCCCAAAAAT 61.544 55.000 5.05 0.00 45.47 1.82
510 511 2.206536 CCAGCCGGAAGCCCAAAAA 61.207 57.895 5.05 0.00 45.47 1.94
511 512 2.600173 CCAGCCGGAAGCCCAAAA 60.600 61.111 5.05 0.00 45.47 2.44
512 513 4.676951 CCCAGCCGGAAGCCCAAA 62.677 66.667 5.05 0.00 45.47 3.28
534 535 0.974010 CATGAAACAGGCCTGGGCAT 60.974 55.000 35.42 28.54 44.11 4.40
535 536 1.607178 CATGAAACAGGCCTGGGCA 60.607 57.895 35.42 27.71 44.11 5.36
536 537 2.353610 CCATGAAACAGGCCTGGGC 61.354 63.158 35.42 23.34 41.06 5.36
537 538 0.682209 CTCCATGAAACAGGCCTGGG 60.682 60.000 35.42 24.81 34.19 4.45
538 539 0.038744 ACTCCATGAAACAGGCCTGG 59.961 55.000 35.42 17.87 34.19 4.45
539 540 1.542915 CAACTCCATGAAACAGGCCTG 59.457 52.381 31.60 31.60 0.00 4.85
540 541 1.915141 CAACTCCATGAAACAGGCCT 58.085 50.000 0.00 0.00 0.00 5.19
541 542 0.244721 GCAACTCCATGAAACAGGCC 59.755 55.000 0.00 0.00 0.00 5.19
542 543 1.200948 GAGCAACTCCATGAAACAGGC 59.799 52.381 0.00 0.00 0.00 4.85
543 544 2.787994 AGAGCAACTCCATGAAACAGG 58.212 47.619 0.00 0.00 0.00 4.00
544 545 7.798596 ATATAAGAGCAACTCCATGAAACAG 57.201 36.000 0.00 0.00 0.00 3.16
549 550 9.533831 TCTGTATATATAAGAGCAACTCCATGA 57.466 33.333 0.00 0.00 0.00 3.07
550 551 9.800433 CTCTGTATATATAAGAGCAACTCCATG 57.200 37.037 13.98 0.00 31.71 3.66
583 584 6.800072 ACTTTGACACCCTTTATCCAAAAA 57.200 33.333 0.00 0.00 0.00 1.94
584 585 7.947890 AGATACTTTGACACCCTTTATCCAAAA 59.052 33.333 0.00 0.00 0.00 2.44
585 586 7.466804 AGATACTTTGACACCCTTTATCCAAA 58.533 34.615 0.00 0.00 0.00 3.28
586 587 7.027874 AGATACTTTGACACCCTTTATCCAA 57.972 36.000 0.00 0.00 0.00 3.53
587 588 6.352737 GGAGATACTTTGACACCCTTTATCCA 60.353 42.308 0.00 0.00 0.00 3.41
588 589 6.056236 GGAGATACTTTGACACCCTTTATCC 58.944 44.000 0.00 0.00 0.00 2.59
589 590 6.539103 GTGGAGATACTTTGACACCCTTTATC 59.461 42.308 0.00 0.00 0.00 1.75
590 591 6.012858 TGTGGAGATACTTTGACACCCTTTAT 60.013 38.462 0.00 0.00 0.00 1.40
591 592 5.308497 TGTGGAGATACTTTGACACCCTTTA 59.692 40.000 0.00 0.00 0.00 1.85
592 593 4.104102 TGTGGAGATACTTTGACACCCTTT 59.896 41.667 0.00 0.00 0.00 3.11
593 594 3.650942 TGTGGAGATACTTTGACACCCTT 59.349 43.478 0.00 0.00 0.00 3.95
594 595 3.248024 TGTGGAGATACTTTGACACCCT 58.752 45.455 0.00 0.00 0.00 4.34
595 596 3.695830 TGTGGAGATACTTTGACACCC 57.304 47.619 0.00 0.00 0.00 4.61
596 597 6.385649 TTTTTGTGGAGATACTTTGACACC 57.614 37.500 0.00 0.00 0.00 4.16
597 598 8.999431 TCTATTTTTGTGGAGATACTTTGACAC 58.001 33.333 0.00 0.00 0.00 3.67
598 599 9.567776 TTCTATTTTTGTGGAGATACTTTGACA 57.432 29.630 0.00 0.00 0.00 3.58
648 649 5.421693 AGCACCAGCATATCCACAATTTTTA 59.578 36.000 0.00 0.00 45.49 1.52
655 656 0.181114 GGAGCACCAGCATATCCACA 59.819 55.000 0.00 0.00 45.49 4.17
656 657 0.536006 GGGAGCACCAGCATATCCAC 60.536 60.000 1.58 0.00 45.49 4.02
664 665 4.828925 GCGAGAGGGAGCACCAGC 62.829 72.222 1.58 0.00 43.89 4.85
755 911 4.488770 TGCTAGGACATATATGGACACCA 58.511 43.478 16.96 4.33 38.19 4.17
769 934 4.452455 CGGATGTGGAAAATATGCTAGGAC 59.548 45.833 0.00 0.00 0.00 3.85
772 937 3.189287 GCCGGATGTGGAAAATATGCTAG 59.811 47.826 5.05 0.00 0.00 3.42
813 1000 2.890474 CGCTCGTATGGGTGGTGC 60.890 66.667 0.00 0.00 0.00 5.01
848 1040 3.775654 GGAGTGGGAGTGGCGGAG 61.776 72.222 0.00 0.00 0.00 4.63
849 1041 4.316823 AGGAGTGGGAGTGGCGGA 62.317 66.667 0.00 0.00 0.00 5.54
851 1043 2.856039 TAGGAGGAGTGGGAGTGGCG 62.856 65.000 0.00 0.00 0.00 5.69
852 1044 1.001760 TAGGAGGAGTGGGAGTGGC 59.998 63.158 0.00 0.00 0.00 5.01
853 1045 0.688087 GGTAGGAGGAGTGGGAGTGG 60.688 65.000 0.00 0.00 0.00 4.00
855 1047 0.632294 GAGGTAGGAGGAGTGGGAGT 59.368 60.000 0.00 0.00 0.00 3.85
856 1048 0.930726 AGAGGTAGGAGGAGTGGGAG 59.069 60.000 0.00 0.00 0.00 4.30
858 1050 1.045911 GCAGAGGTAGGAGGAGTGGG 61.046 65.000 0.00 0.00 0.00 4.61
861 1053 1.859302 CAAGCAGAGGTAGGAGGAGT 58.141 55.000 0.00 0.00 0.00 3.85
863 1055 0.041833 AGCAAGCAGAGGTAGGAGGA 59.958 55.000 0.00 0.00 0.00 3.71
864 1056 0.463620 GAGCAAGCAGAGGTAGGAGG 59.536 60.000 0.00 0.00 0.00 4.30
935 1230 0.033796 CCGGTCTGGTGGTCTAGGTA 60.034 60.000 0.00 0.00 0.00 3.08
974 1269 2.099652 CTCCCACGCACAAGGAGTCA 62.100 60.000 0.00 0.00 41.96 3.41
990 1285 0.802607 GCACGTCCATCTCGAACTCC 60.803 60.000 0.00 0.00 0.00 3.85
1065 1360 2.997315 CTCTCCACCACCCTCGCA 60.997 66.667 0.00 0.00 0.00 5.10
1235 1532 6.128117 GGAGAGAGGCATCTAACTAAGTATCG 60.128 46.154 0.00 0.00 35.30 2.92
1249 1552 3.861846 TGTATGGTATGGAGAGAGGCAT 58.138 45.455 0.00 0.00 0.00 4.40
1253 1556 6.596309 TTAGCATGTATGGTATGGAGAGAG 57.404 41.667 4.79 0.00 40.08 3.20
1263 1566 4.825422 CCAGATCGATTAGCATGTATGGT 58.175 43.478 0.00 1.92 41.93 3.55
1265 1568 3.620374 GGCCAGATCGATTAGCATGTATG 59.380 47.826 14.63 0.00 0.00 2.39
1266 1569 3.369892 GGGCCAGATCGATTAGCATGTAT 60.370 47.826 4.39 0.00 0.00 2.29
1267 1570 2.028112 GGGCCAGATCGATTAGCATGTA 60.028 50.000 4.39 0.00 0.00 2.29
1268 1571 1.271054 GGGCCAGATCGATTAGCATGT 60.271 52.381 4.39 0.00 0.00 3.21
1269 1572 1.271001 TGGGCCAGATCGATTAGCATG 60.271 52.381 0.00 0.00 0.00 4.06
1323 1647 5.163468 TGCAGTTGCCACTAAAAGAATTCAA 60.163 36.000 8.44 0.00 41.18 2.69
1416 1742 6.506538 TTACGGAGGGAGTACTACTATTCT 57.493 41.667 4.77 0.00 0.00 2.40
1417 1743 6.770303 AGTTTACGGAGGGAGTACTACTATTC 59.230 42.308 4.77 0.95 0.00 1.75
1424 1750 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
1425 1751 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
1426 1752 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1427 1753 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1428 1754 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
1429 1755 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1430 1756 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1431 1757 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1432 1758 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1433 1759 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1434 1760 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1448 1774 9.654663 ACTAAAAATAGTGATCTAAACGCTCTT 57.345 29.630 0.00 0.00 0.00 2.85
1462 1788 9.088512 AGAGCGTTTAGATCACTAAAAATAGTG 57.911 33.333 9.22 9.22 45.97 2.74
1463 1789 9.654663 AAGAGCGTTTAGATCACTAAAAATAGT 57.345 29.630 0.00 0.00 45.97 2.12
1480 1806 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1481 1807 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1482 1808 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1483 1809 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1484 1810 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1495 1821 9.544579 ACTTAATTAGTACTCCCTCTGTAAACT 57.455 33.333 0.00 0.00 34.56 2.66
1531 1862 9.631257 AGTGATTACAATATTTCATGTGATGGA 57.369 29.630 0.00 0.00 0.00 3.41
1548 1881 1.904771 CTCCGGCCCAGTGATTACA 59.095 57.895 0.00 0.00 0.00 2.41
1556 1922 2.045045 TCAATTGCTCCGGCCCAG 60.045 61.111 0.00 0.00 37.74 4.45
1698 2075 5.808042 AATTTCAGTTGTCCATCTCATCG 57.192 39.130 0.00 0.00 0.00 3.84
1699 2076 7.856145 ACTAATTTCAGTTGTCCATCTCATC 57.144 36.000 0.00 0.00 0.00 2.92
1700 2077 9.911788 ATAACTAATTTCAGTTGTCCATCTCAT 57.088 29.630 4.21 0.00 39.12 2.90
1723 2100 7.388224 TCAAAATAAGCACGACTGTACCAATAA 59.612 33.333 0.00 0.00 0.00 1.40
1737 2121 4.066710 GACGTGAGGTCAAAATAAGCAC 57.933 45.455 0.00 0.00 45.36 4.40
1763 2147 6.986424 TTTCAATGCTCGTAGATATGTACG 57.014 37.500 22.65 22.65 45.84 3.67
1772 2156 6.923508 TGATACCTGTATTTCAATGCTCGTAG 59.076 38.462 0.00 0.00 0.00 3.51
1787 2236 4.652421 AGGCGAGGTTTAATGATACCTGTA 59.348 41.667 1.18 0.00 44.65 2.74
1837 2288 3.149005 TGGAACTTGGGGTTGTGTATC 57.851 47.619 0.00 0.00 38.41 2.24
1845 2298 2.972021 CCTTTCAAATGGAACTTGGGGT 59.028 45.455 0.00 0.00 34.56 4.95
1955 2743 5.525378 CCTGATAGTAATGTCAAACAGAGGC 59.475 44.000 0.00 0.00 0.00 4.70
1967 2755 6.356556 TCCATTTGTCACCCTGATAGTAATG 58.643 40.000 0.00 0.00 0.00 1.90
2002 2792 1.133450 TCTAGCTATCCAGTCCGGCTT 60.133 52.381 0.00 0.00 34.88 4.35
2039 2836 5.165676 TCGATGTTGTACTTGGTACATGAC 58.834 41.667 10.67 8.08 46.36 3.06
2058 2856 6.432472 TCTCACTTCATACTATCTGCATCGAT 59.568 38.462 0.00 0.00 0.00 3.59
2087 2972 8.195617 CAGGAGATAATTCTTCTGTTTCTCAC 57.804 38.462 3.53 0.00 46.65 3.51
2131 3016 9.784680 TGTTAGCTAAAACAAAAATGTTTCGTA 57.215 25.926 7.99 0.00 40.67 3.43
2145 3030 7.593644 CACCCTTTGTACATTGTTAGCTAAAAC 59.406 37.037 7.99 0.00 0.00 2.43
2151 3036 5.699097 TTCACCCTTTGTACATTGTTAGC 57.301 39.130 0.00 0.00 0.00 3.09
2157 3043 6.487331 TGTCGTATTTTCACCCTTTGTACATT 59.513 34.615 0.00 0.00 0.00 2.71
2165 3051 4.081322 ACTGTGTCGTATTTTCACCCTT 57.919 40.909 0.00 0.00 0.00 3.95
2169 3055 6.758593 TCACTTACTGTGTCGTATTTTCAC 57.241 37.500 0.00 0.00 46.27 3.18
2178 3064 6.806739 TCAGTTGATATTCACTTACTGTGTCG 59.193 38.462 0.00 0.00 46.27 4.35
2179 3065 8.709386 ATCAGTTGATATTCACTTACTGTGTC 57.291 34.615 0.00 0.00 39.18 3.67
2195 3081 7.395489 ACAAGGCATTCTTTCTTATCAGTTGAT 59.605 33.333 0.00 0.00 34.53 2.57
2389 3421 4.422073 TTTCCCAGATCTATGCATCGTT 57.578 40.909 0.19 0.00 0.00 3.85
2572 3607 5.011090 AGCTTCTTTATGTATGACGCAGA 57.989 39.130 0.00 0.00 30.41 4.26
2586 3621 2.304470 GACCCTCTCCTTGAGCTTCTTT 59.696 50.000 0.00 0.00 41.35 2.52
2642 3677 2.345760 CCTCTTGCGGCAGCCATTT 61.346 57.895 13.30 0.00 44.33 2.32
2663 3698 0.676782 GGGCGTTGAAGCACCACTAT 60.677 55.000 0.00 0.00 39.27 2.12
2685 3720 1.152183 ACTCGTGGTAGGGGTGGTT 60.152 57.895 0.00 0.00 0.00 3.67
2720 3755 4.081642 CCTCCCAATGTTTCTCTCGTTCTA 60.082 45.833 0.00 0.00 0.00 2.10
2758 3793 2.360350 ATGTTGCCGCACCTCCAG 60.360 61.111 0.00 0.00 0.00 3.86
2781 3816 1.915614 GCACCACATCCAAGCTCGTG 61.916 60.000 0.00 0.00 0.00 4.35
2951 3986 1.725641 TGCGTAGATGTGAAAGGCTG 58.274 50.000 0.00 0.00 0.00 4.85
2996 4035 4.697352 ACTTGAACTCATGTGTGCCTTATC 59.303 41.667 0.31 0.00 33.67 1.75
3041 4367 8.902540 TCAATAAGTATGGGCACATAAACTAG 57.097 34.615 11.02 0.00 41.02 2.57
3140 4467 8.148351 TGTGCCTTTCACTTGTATATATAGACC 58.852 37.037 5.09 0.00 45.81 3.85
3201 4533 7.701445 AGAGAAATCATCGATTCCACATTTTC 58.299 34.615 0.00 0.00 30.29 2.29
3242 4574 3.247162 TGGCTAGCTTTCCCCAATTTTT 58.753 40.909 15.72 0.00 0.00 1.94
3322 4659 2.107366 GTGGAGAGGGAGGAAGAGAAG 58.893 57.143 0.00 0.00 0.00 2.85
3453 4792 2.420022 GACCCATGTGAATTTCGTGGAG 59.580 50.000 18.38 12.93 42.63 3.86
3504 4843 2.715046 CTGAAGGCCTGCACAAGATAA 58.285 47.619 10.33 0.00 0.00 1.75
3561 4900 1.863454 CATACCAATGCTCTCAGTCGC 59.137 52.381 0.00 0.00 0.00 5.19
3717 5117 5.563867 GCAATCAACATCCTTTTCCGTACAA 60.564 40.000 0.00 0.00 0.00 2.41
3722 5122 3.441572 AGAGCAATCAACATCCTTTTCCG 59.558 43.478 0.00 0.00 0.00 4.30
3759 5159 9.052759 CCAGACATGGTTACTGTAAATTATACC 57.947 37.037 1.10 0.00 42.17 2.73
3786 5186 1.542030 ACGTGCAACAAACCTTGACAA 59.458 42.857 0.00 0.00 35.74 3.18
3823 5223 9.841880 GCGATACATGAACATAGACTTATTCTA 57.158 33.333 0.00 0.00 41.29 2.10
3837 5237 6.619446 GCCAGAATATTGAGCGATACATGAAC 60.619 42.308 0.00 0.00 0.00 3.18
3847 5247 4.309933 TCACATAGCCAGAATATTGAGCG 58.690 43.478 0.00 0.00 0.00 5.03
3877 5277 2.909006 TGGGATATTTTTGGGCTTGCAA 59.091 40.909 0.00 0.00 0.00 4.08
3901 5303 7.722795 ACAAAATAAATTACACTTGGGCAAC 57.277 32.000 0.00 0.00 0.00 4.17
3920 5322 8.723942 ATAAAGCAAACCACACAAATACAAAA 57.276 26.923 0.00 0.00 0.00 2.44
3966 5368 0.039165 CTTTTTCTCCTGGTTGCGCC 60.039 55.000 4.18 0.00 37.90 6.53
3969 5371 1.068954 CGCTCTTTTTCTCCTGGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
3972 5374 0.765510 ACCGCTCTTTTTCTCCTGGT 59.234 50.000 0.00 0.00 0.00 4.00
4054 5456 9.547279 ACTTCATTCCCCTAAGTAATGAATTTT 57.453 29.630 9.42 0.00 44.35 1.82
4079 5481 6.566197 AATCAGGATGTTGAGAGAACAAAC 57.434 37.500 0.00 0.00 37.40 2.93
4098 5500 7.622893 TGTCAACATCCGAATATCAAAATCA 57.377 32.000 0.00 0.00 0.00 2.57
4154 5556 8.385898 TCTTTCTTCCGCTTTATTGAACTTTA 57.614 30.769 0.00 0.00 0.00 1.85
4161 5563 5.123820 TCCACATCTTTCTTCCGCTTTATTG 59.876 40.000 0.00 0.00 0.00 1.90
4224 5640 8.362639 AGTACACTCCTTCGTTTGATACTTTAA 58.637 33.333 0.00 0.00 0.00 1.52
4246 5703 6.546772 ACTTGCTGAGTCTTACCCTATAGTAC 59.453 42.308 0.00 0.00 31.20 2.73
4284 5741 7.362056 CGCCAATCTCTTTCTCTAATTTGGAAA 60.362 37.037 0.00 0.00 0.00 3.13
4308 5765 1.661341 ACATCAGCCTCTCATTTCGC 58.339 50.000 0.00 0.00 0.00 4.70
4309 5766 5.745514 CAATAACATCAGCCTCTCATTTCG 58.254 41.667 0.00 0.00 0.00 3.46
4348 5806 6.693978 CCATCACGTAATAGTATTCAACACGA 59.306 38.462 18.22 5.28 0.00 4.35
4353 5811 7.356089 AGACCCATCACGTAATAGTATTCAA 57.644 36.000 0.00 0.00 0.00 2.69
4388 5846 5.449725 GGAAGAAAGTGAAGCATCTAATGGC 60.450 44.000 0.00 0.00 0.00 4.40
4460 5919 6.040504 GGTGTGTTCTTTCCTGGTAATCTTTT 59.959 38.462 0.00 0.00 0.00 2.27
4465 5924 3.139397 TGGGTGTGTTCTTTCCTGGTAAT 59.861 43.478 0.00 0.00 0.00 1.89
4513 5972 1.666888 CCAGCAACCAATCACTTTCGC 60.667 52.381 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.