Multiple sequence alignment - TraesCS3B01G001800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G001800 chr3B 100.000 2392 0 0 1 2392 1614442 1612051 0.000000e+00 4418
1 TraesCS3B01G001800 chr3A 92.262 840 42 14 866 1702 1389563 1388744 0.000000e+00 1170
2 TraesCS3B01G001800 chr3A 92.015 551 38 3 2 552 1390332 1389788 0.000000e+00 769
3 TraesCS3B01G001800 chr3A 93.496 246 11 2 609 853 1389788 1389547 6.290000e-96 361
4 TraesCS3B01G001800 chr3A 91.195 159 6 3 2148 2298 1388544 1388386 2.410000e-50 209
5 TraesCS3B01G001800 chr2D 94.465 271 15 0 1701 1971 300882972 300883242 3.680000e-113 418
6 TraesCS3B01G001800 chr1B 94.444 270 15 0 1702 1971 221530450 221530181 1.320000e-112 416
7 TraesCS3B01G001800 chr1B 94.052 269 16 0 1703 1971 215948657 215948389 2.210000e-110 409
8 TraesCS3B01G001800 chr5B 93.704 270 16 1 1702 1971 439967278 439967546 1.030000e-108 403
9 TraesCS3B01G001800 chr5B 93.657 268 17 0 1704 1971 205869847 205870114 3.700000e-108 401
10 TraesCS3B01G001800 chr6D 93.382 272 17 1 1701 1971 121348303 121348574 3.700000e-108 401
11 TraesCS3B01G001800 chr6B 93.358 271 18 0 1701 1971 567391692 567391422 3.700000e-108 401
12 TraesCS3B01G001800 chr3D 93.358 271 18 0 1701 1971 605994404 605994674 3.700000e-108 401
13 TraesCS3B01G001800 chr5D 91.549 284 24 0 1688 1971 534457021 534457304 2.230000e-105 392


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G001800 chr3B 1612051 1614442 2391 True 4418.00 4418 100.000 1 2392 1 chr3B.!!$R1 2391
1 TraesCS3B01G001800 chr3A 1388386 1390332 1946 True 627.25 1170 92.242 2 2298 4 chr3A.!!$R1 2296

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 2.225727 GACCCTTTACTTTGCTTGACGG 59.774 50.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 1947 0.036306 CAGGTGGCTACGGAGGTTTT 59.964 55.0 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.232452 ACCATCGCTCCTAGATGCATAC 59.768 50.000 0.00 0.00 42.92 2.39
52 53 3.268034 AGGATCCCCTACCTCAAGATC 57.732 52.381 8.55 0.00 42.15 2.75
55 56 3.582164 GATCCCCTACCTCAAGATCTGT 58.418 50.000 0.00 0.00 32.42 3.41
57 58 2.587777 TCCCCTACCTCAAGATCTGTCT 59.412 50.000 0.00 0.00 35.82 3.41
83 84 4.812476 TCCGTCCGAATGGCAGCG 62.812 66.667 5.66 5.66 34.14 5.18
111 112 2.488347 GGCCAAGTTGTCTGACCCTTTA 60.488 50.000 5.17 0.00 0.00 1.85
121 122 4.134563 GTCTGACCCTTTACTTTGCTTGA 58.865 43.478 0.00 0.00 0.00 3.02
124 125 2.225727 GACCCTTTACTTTGCTTGACGG 59.774 50.000 0.00 0.00 0.00 4.79
158 159 5.413499 CAATTGGGAGCTATTTTTGTCCAG 58.587 41.667 0.00 0.00 0.00 3.86
159 160 3.806949 TGGGAGCTATTTTTGTCCAGT 57.193 42.857 0.00 0.00 0.00 4.00
169 170 7.719633 AGCTATTTTTGTCCAGTTTTGAGTAGA 59.280 33.333 0.00 0.00 0.00 2.59
179 180 7.170320 GTCCAGTTTTGAGTAGACGAAAATACA 59.830 37.037 0.00 0.00 0.00 2.29
297 298 6.775629 ACTAGGAAAATTAGCAAGGTTGACAA 59.224 34.615 0.00 0.00 0.00 3.18
372 373 7.615582 ACTTATCATTGGTGTAAGATGTGTG 57.384 36.000 9.70 0.00 31.55 3.82
421 422 7.039923 GGTTCTCACCGAGGATATATAACTTGA 60.040 40.741 0.00 0.24 31.60 3.02
422 423 7.450124 TCTCACCGAGGATATATAACTTGAC 57.550 40.000 0.00 0.00 0.00 3.18
423 424 6.148976 TCTCACCGAGGATATATAACTTGACG 59.851 42.308 0.00 0.00 0.00 4.35
432 433 8.857098 AGGATATATAACTTGACGCTTTCTACA 58.143 33.333 0.00 0.00 0.00 2.74
437 438 3.537580 ACTTGACGCTTTCTACAAACCA 58.462 40.909 0.00 0.00 0.00 3.67
445 446 4.685628 CGCTTTCTACAAACCATGCAATTT 59.314 37.500 0.00 0.00 0.00 1.82
456 457 2.696707 CCATGCAATTTGGGCTCACTAT 59.303 45.455 0.00 0.00 0.00 2.12
501 502 4.282496 GAACCATTAGGGAGAGTGAGAGA 58.718 47.826 0.00 0.00 41.15 3.10
515 516 6.997655 AGAGTGAGAGAATGTAATGTGAACA 58.002 36.000 0.00 0.00 0.00 3.18
516 517 7.445121 AGAGTGAGAGAATGTAATGTGAACAA 58.555 34.615 0.00 0.00 0.00 2.83
530 531 9.946165 GTAATGTGAACAAAAGCTTTAACTACT 57.054 29.630 13.10 0.00 0.00 2.57
551 552 8.657712 ACTACTTAGTATGTTGGTTTCCTTCTT 58.342 33.333 0.00 0.00 34.13 2.52
552 553 7.745620 ACTTAGTATGTTGGTTTCCTTCTTG 57.254 36.000 0.00 0.00 0.00 3.02
553 554 7.287810 ACTTAGTATGTTGGTTTCCTTCTTGT 58.712 34.615 0.00 0.00 0.00 3.16
554 555 8.434392 ACTTAGTATGTTGGTTTCCTTCTTGTA 58.566 33.333 0.00 0.00 0.00 2.41
555 556 8.842358 TTAGTATGTTGGTTTCCTTCTTGTAG 57.158 34.615 0.00 0.00 0.00 2.74
556 557 5.705905 AGTATGTTGGTTTCCTTCTTGTAGC 59.294 40.000 0.00 0.00 0.00 3.58
557 558 3.219281 TGTTGGTTTCCTTCTTGTAGCC 58.781 45.455 0.00 0.00 0.00 3.93
558 559 3.219281 GTTGGTTTCCTTCTTGTAGCCA 58.781 45.455 0.00 0.00 0.00 4.75
559 560 3.806949 TGGTTTCCTTCTTGTAGCCAT 57.193 42.857 0.00 0.00 0.00 4.40
560 561 3.686016 TGGTTTCCTTCTTGTAGCCATC 58.314 45.455 0.00 0.00 0.00 3.51
561 562 3.330701 TGGTTTCCTTCTTGTAGCCATCT 59.669 43.478 0.00 0.00 0.00 2.90
562 563 4.202567 TGGTTTCCTTCTTGTAGCCATCTT 60.203 41.667 0.00 0.00 0.00 2.40
563 564 4.156739 GGTTTCCTTCTTGTAGCCATCTTG 59.843 45.833 0.00 0.00 0.00 3.02
564 565 4.908601 TTCCTTCTTGTAGCCATCTTGA 57.091 40.909 0.00 0.00 0.00 3.02
565 566 4.908601 TCCTTCTTGTAGCCATCTTGAA 57.091 40.909 0.00 0.00 0.00 2.69
566 567 5.441718 TCCTTCTTGTAGCCATCTTGAAT 57.558 39.130 0.00 0.00 0.00 2.57
567 568 6.560003 TCCTTCTTGTAGCCATCTTGAATA 57.440 37.500 0.00 0.00 0.00 1.75
568 569 6.349300 TCCTTCTTGTAGCCATCTTGAATAC 58.651 40.000 0.00 0.00 0.00 1.89
569 570 6.070251 TCCTTCTTGTAGCCATCTTGAATACA 60.070 38.462 0.00 0.00 0.00 2.29
570 571 6.769822 CCTTCTTGTAGCCATCTTGAATACAT 59.230 38.462 0.00 0.00 0.00 2.29
571 572 7.255035 CCTTCTTGTAGCCATCTTGAATACATG 60.255 40.741 0.00 0.00 0.00 3.21
572 573 6.653020 TCTTGTAGCCATCTTGAATACATGT 58.347 36.000 2.69 2.69 0.00 3.21
573 574 7.791029 TCTTGTAGCCATCTTGAATACATGTA 58.209 34.615 8.27 8.27 0.00 2.29
574 575 8.432013 TCTTGTAGCCATCTTGAATACATGTAT 58.568 33.333 12.75 12.75 0.00 2.29
575 576 7.967890 TGTAGCCATCTTGAATACATGTATG 57.032 36.000 18.94 7.28 0.00 2.39
576 577 7.508687 TGTAGCCATCTTGAATACATGTATGT 58.491 34.615 18.94 9.29 44.48 2.29
577 578 7.992608 TGTAGCCATCTTGAATACATGTATGTT 59.007 33.333 18.94 5.26 41.97 2.71
578 579 7.886629 AGCCATCTTGAATACATGTATGTTT 57.113 32.000 18.94 4.50 41.97 2.83
579 580 7.709947 AGCCATCTTGAATACATGTATGTTTG 58.290 34.615 18.94 10.17 41.97 2.93
580 581 7.340232 AGCCATCTTGAATACATGTATGTTTGT 59.660 33.333 18.94 2.86 41.97 2.83
581 582 8.620416 GCCATCTTGAATACATGTATGTTTGTA 58.380 33.333 18.94 4.62 41.97 2.41
585 586 9.733556 TCTTGAATACATGTATGTTTGTAACCT 57.266 29.630 18.94 0.00 41.97 3.50
592 593 8.319143 ACATGTATGTTTGTAACCTAAGTGAC 57.681 34.615 0.00 0.00 37.90 3.67
593 594 7.389607 ACATGTATGTTTGTAACCTAAGTGACC 59.610 37.037 0.00 0.00 37.90 4.02
594 595 7.069877 TGTATGTTTGTAACCTAAGTGACCT 57.930 36.000 0.00 0.00 0.00 3.85
595 596 7.511268 TGTATGTTTGTAACCTAAGTGACCTT 58.489 34.615 0.00 0.00 34.56 3.50
596 597 7.658575 TGTATGTTTGTAACCTAAGTGACCTTC 59.341 37.037 0.00 0.00 31.89 3.46
597 598 6.243216 TGTTTGTAACCTAAGTGACCTTCT 57.757 37.500 0.00 0.00 31.89 2.85
598 599 7.364149 TGTTTGTAACCTAAGTGACCTTCTA 57.636 36.000 0.00 0.00 31.89 2.10
599 600 7.970102 TGTTTGTAACCTAAGTGACCTTCTAT 58.030 34.615 0.00 0.00 31.89 1.98
600 601 8.434392 TGTTTGTAACCTAAGTGACCTTCTATT 58.566 33.333 0.00 0.00 31.89 1.73
601 602 9.281371 GTTTGTAACCTAAGTGACCTTCTATTT 57.719 33.333 0.00 0.00 31.89 1.40
602 603 9.856162 TTTGTAACCTAAGTGACCTTCTATTTT 57.144 29.630 0.00 0.00 31.89 1.82
607 608 9.449719 AACCTAAGTGACCTTCTATTTTATGTG 57.550 33.333 0.00 0.00 31.89 3.21
657 658 8.141909 AGTTTTGATGCCATATGAAGATTCATG 58.858 33.333 16.49 4.15 46.68 3.07
661 662 6.210584 TGATGCCATATGAAGATTCATGCATT 59.789 34.615 22.42 12.78 46.17 3.56
780 781 8.699749 CCAAATTTAGTTTACTTAGCTTTGCAC 58.300 33.333 0.00 0.00 0.00 4.57
800 802 8.948631 TTGCACTCTTTCTTACCTCATATTAG 57.051 34.615 0.00 0.00 0.00 1.73
811 813 9.435570 TCTTACCTCATATTAGTTTAGCTTCCT 57.564 33.333 0.00 0.00 0.00 3.36
853 855 8.212995 GGGCCTTACAACTAACTATTTATGGTA 58.787 37.037 0.84 0.00 0.00 3.25
854 856 9.788889 GGCCTTACAACTAACTATTTATGGTAT 57.211 33.333 0.00 0.00 0.00 2.73
917 919 2.423577 ACGCCATAAGAACCTCACAAC 58.576 47.619 0.00 0.00 0.00 3.32
924 926 2.833631 AGAACCTCACAACGTTAGGG 57.166 50.000 17.71 11.89 31.75 3.53
1008 1010 4.906618 TCTCTTGTTCTACAATGGAACCC 58.093 43.478 3.04 0.00 41.42 4.11
1010 1012 3.071892 TCTTGTTCTACAATGGAACCCGT 59.928 43.478 3.04 0.00 41.42 5.28
1031 1033 1.228862 GGAAGGCCATTGTGGGTGT 60.229 57.895 5.01 0.00 38.19 4.16
1237 1239 6.399639 TTGTTACAAGGAGATTTGGGAAAC 57.600 37.500 0.00 0.00 32.32 2.78
1256 1258 1.282157 ACTTGCATGGGTAGGGAGAAC 59.718 52.381 4.44 0.00 0.00 3.01
1259 1261 0.539986 GCATGGGTAGGGAGAACGAA 59.460 55.000 0.00 0.00 0.00 3.85
1428 1430 7.139896 TCGTTTACAGTGCATTGATTGTAAT 57.860 32.000 16.98 0.00 36.31 1.89
1437 1439 6.705825 AGTGCATTGATTGTAATATGCGACTA 59.294 34.615 0.00 0.00 44.77 2.59
1441 1443 7.148423 GCATTGATTGTAATATGCGACTATCCA 60.148 37.037 0.00 0.00 34.70 3.41
1464 1466 8.970020 TCCATCCAAGTTACTACTATTTCGTAA 58.030 33.333 0.00 0.00 33.17 3.18
1475 1477 5.418310 ACTATTTCGTAAATGATTGGGCG 57.582 39.130 0.00 0.00 32.38 6.13
1476 1478 5.120399 ACTATTTCGTAAATGATTGGGCGA 58.880 37.500 0.00 0.00 32.38 5.54
1477 1479 4.974368 ATTTCGTAAATGATTGGGCGAA 57.026 36.364 7.33 7.33 36.72 4.70
1479 1481 4.974368 TTCGTAAATGATTGGGCGAAAT 57.026 36.364 8.49 0.00 35.80 2.17
1487 1489 4.149511 TGATTGGGCGAAATCATCTACA 57.850 40.909 9.43 0.00 40.72 2.74
1489 1491 4.946772 TGATTGGGCGAAATCATCTACAAA 59.053 37.500 9.43 0.00 40.72 2.83
1490 1492 5.417266 TGATTGGGCGAAATCATCTACAAAA 59.583 36.000 9.43 0.00 40.72 2.44
1491 1493 5.913137 TTGGGCGAAATCATCTACAAAAT 57.087 34.783 0.00 0.00 0.00 1.82
1492 1494 7.284261 TGATTGGGCGAAATCATCTACAAAATA 59.716 33.333 9.43 0.00 40.72 1.40
1493 1495 7.581213 TTGGGCGAAATCATCTACAAAATAT 57.419 32.000 0.00 0.00 0.00 1.28
1495 1497 8.862325 TGGGCGAAATCATCTACAAAATATAT 57.138 30.769 0.00 0.00 0.00 0.86
1496 1498 9.952030 TGGGCGAAATCATCTACAAAATATATA 57.048 29.630 0.00 0.00 0.00 0.86
1554 1556 6.212888 ACTTTATGTTCAAGATTGGGATGC 57.787 37.500 0.00 0.00 0.00 3.91
1560 1562 4.079844 TGTTCAAGATTGGGATGCTATGGA 60.080 41.667 0.00 0.00 0.00 3.41
1561 1563 4.794311 TCAAGATTGGGATGCTATGGAA 57.206 40.909 0.00 0.00 0.00 3.53
1655 1658 6.820335 TGTATATTTGACACTCTGCTAGCAT 58.180 36.000 19.72 1.86 0.00 3.79
1702 1705 6.481643 TGTCTTAATTTGCTAGGCCTAGTTT 58.518 36.000 34.85 24.99 35.65 2.66
1703 1706 6.946009 TGTCTTAATTTGCTAGGCCTAGTTTT 59.054 34.615 34.85 24.71 35.65 2.43
1704 1707 7.450323 TGTCTTAATTTGCTAGGCCTAGTTTTT 59.550 33.333 34.85 24.99 35.65 1.94
1735 1738 7.881775 AAGGGCGACTTTATTATCTCAAAAT 57.118 32.000 0.00 0.00 35.35 1.82
1736 1739 7.264373 AGGGCGACTTTATTATCTCAAAATG 57.736 36.000 0.00 0.00 0.00 2.32
1737 1740 6.828785 AGGGCGACTTTATTATCTCAAAATGT 59.171 34.615 0.00 0.00 0.00 2.71
1738 1741 7.990886 AGGGCGACTTTATTATCTCAAAATGTA 59.009 33.333 0.00 0.00 0.00 2.29
1739 1742 8.283291 GGGCGACTTTATTATCTCAAAATGTAG 58.717 37.037 0.00 0.00 0.00 2.74
1740 1743 7.798982 GGCGACTTTATTATCTCAAAATGTAGC 59.201 37.037 0.00 0.00 0.00 3.58
1741 1744 8.335356 GCGACTTTATTATCTCAAAATGTAGCA 58.665 33.333 0.00 0.00 0.00 3.49
1758 1761 0.864455 GCATCAAGCGGATACAGAGC 59.136 55.000 0.00 0.00 33.95 4.09
1759 1762 1.807755 GCATCAAGCGGATACAGAGCA 60.808 52.381 0.00 0.00 33.95 4.26
1760 1763 2.763933 CATCAAGCGGATACAGAGCAT 58.236 47.619 0.00 0.00 33.95 3.79
1761 1764 2.988010 TCAAGCGGATACAGAGCATT 57.012 45.000 0.00 0.00 0.00 3.56
1762 1765 4.309933 CATCAAGCGGATACAGAGCATTA 58.690 43.478 0.00 0.00 33.95 1.90
1763 1766 4.607293 TCAAGCGGATACAGAGCATTAT 57.393 40.909 0.00 0.00 0.00 1.28
1764 1767 4.309933 TCAAGCGGATACAGAGCATTATG 58.690 43.478 0.00 0.00 0.00 1.90
1765 1768 4.039124 TCAAGCGGATACAGAGCATTATGA 59.961 41.667 0.00 0.00 0.00 2.15
1766 1769 4.185467 AGCGGATACAGAGCATTATGAG 57.815 45.455 0.00 0.00 0.00 2.90
1767 1770 3.576118 AGCGGATACAGAGCATTATGAGT 59.424 43.478 0.00 0.00 0.00 3.41
1768 1771 4.767409 AGCGGATACAGAGCATTATGAGTA 59.233 41.667 0.00 0.00 0.00 2.59
1769 1772 5.243954 AGCGGATACAGAGCATTATGAGTAA 59.756 40.000 0.00 0.00 0.00 2.24
1770 1773 5.346281 GCGGATACAGAGCATTATGAGTAAC 59.654 44.000 0.00 0.00 0.00 2.50
1771 1774 6.447162 CGGATACAGAGCATTATGAGTAACA 58.553 40.000 0.00 0.00 0.00 2.41
1772 1775 6.363626 CGGATACAGAGCATTATGAGTAACAC 59.636 42.308 0.00 0.00 0.00 3.32
1773 1776 6.647067 GGATACAGAGCATTATGAGTAACACC 59.353 42.308 0.00 0.00 0.00 4.16
1774 1777 4.770795 ACAGAGCATTATGAGTAACACCC 58.229 43.478 0.00 0.00 0.00 4.61
1775 1778 3.804325 CAGAGCATTATGAGTAACACCCG 59.196 47.826 0.00 0.00 0.00 5.28
1776 1779 3.131396 GAGCATTATGAGTAACACCCGG 58.869 50.000 0.00 0.00 0.00 5.73
1777 1780 1.602377 GCATTATGAGTAACACCCGGC 59.398 52.381 0.00 0.00 0.00 6.13
1778 1781 2.218603 CATTATGAGTAACACCCGGCC 58.781 52.381 0.00 0.00 0.00 6.13
1779 1782 1.575419 TTATGAGTAACACCCGGCCT 58.425 50.000 0.00 0.00 0.00 5.19
1780 1783 1.117150 TATGAGTAACACCCGGCCTC 58.883 55.000 0.00 0.00 0.00 4.70
1781 1784 0.617820 ATGAGTAACACCCGGCCTCT 60.618 55.000 0.00 0.00 0.00 3.69
1782 1785 1.218316 GAGTAACACCCGGCCTCTG 59.782 63.158 0.00 0.00 0.00 3.35
1783 1786 2.436115 GTAACACCCGGCCTCTGC 60.436 66.667 0.00 0.00 0.00 4.26
1784 1787 2.925706 TAACACCCGGCCTCTGCA 60.926 61.111 0.00 0.00 40.13 4.41
1785 1788 2.297895 TAACACCCGGCCTCTGCAT 61.298 57.895 0.00 0.00 40.13 3.96
1786 1789 0.978667 TAACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
1787 1790 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
1788 1791 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
1789 1792 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
1790 1793 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
1791 1794 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
1792 1795 1.541233 CCCGGCCTCTGCATAACTAAG 60.541 57.143 0.00 0.00 40.13 2.18
1793 1796 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
1794 1797 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
1795 1798 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
1808 1811 8.746922 CATAACTAAGATGCACACAACAAAAT 57.253 30.769 0.00 0.00 0.00 1.82
1809 1812 8.853345 CATAACTAAGATGCACACAACAAAATC 58.147 33.333 0.00 0.00 0.00 2.17
1810 1813 5.772521 ACTAAGATGCACACAACAAAATCC 58.227 37.500 0.00 0.00 0.00 3.01
1811 1814 4.669206 AAGATGCACACAACAAAATCCA 57.331 36.364 0.00 0.00 0.00 3.41
1812 1815 4.247267 AGATGCACACAACAAAATCCAG 57.753 40.909 0.00 0.00 0.00 3.86
1813 1816 3.890756 AGATGCACACAACAAAATCCAGA 59.109 39.130 0.00 0.00 0.00 3.86
1814 1817 4.341806 AGATGCACACAACAAAATCCAGAA 59.658 37.500 0.00 0.00 0.00 3.02
1815 1818 4.044336 TGCACACAACAAAATCCAGAAG 57.956 40.909 0.00 0.00 0.00 2.85
1816 1819 3.446873 TGCACACAACAAAATCCAGAAGT 59.553 39.130 0.00 0.00 0.00 3.01
1817 1820 4.044426 GCACACAACAAAATCCAGAAGTC 58.956 43.478 0.00 0.00 0.00 3.01
1818 1821 4.202050 GCACACAACAAAATCCAGAAGTCT 60.202 41.667 0.00 0.00 0.00 3.24
1819 1822 5.276270 CACACAACAAAATCCAGAAGTCTG 58.724 41.667 1.05 1.05 43.40 3.51
1853 1856 8.934825 ACCATGAAATAAAAATCGACAAATTGG 58.065 29.630 0.00 0.00 0.00 3.16
1854 1857 7.904461 CCATGAAATAAAAATCGACAAATTGGC 59.096 33.333 0.00 0.00 0.00 4.52
1855 1858 7.953158 TGAAATAAAAATCGACAAATTGGCA 57.047 28.000 0.00 0.00 0.00 4.92
1856 1859 8.370493 TGAAATAAAAATCGACAAATTGGCAA 57.630 26.923 0.68 0.68 0.00 4.52
1857 1860 8.279103 TGAAATAAAAATCGACAAATTGGCAAC 58.721 29.630 0.00 0.00 0.00 4.17
1873 1876 5.125367 TGGCAACAGTAGAGTCCTATAGA 57.875 43.478 0.00 0.00 46.17 1.98
1874 1877 4.888239 TGGCAACAGTAGAGTCCTATAGAC 59.112 45.833 0.00 0.00 46.17 2.59
1875 1878 6.156177 TGGCAACAGTAGAGTCCTATAGACC 61.156 48.000 0.00 0.00 45.17 3.85
1885 1888 4.422546 GTCCTATAGACCGACACTATGC 57.577 50.000 0.00 0.00 39.84 3.14
1886 1889 3.190953 GTCCTATAGACCGACACTATGCC 59.809 52.174 0.00 0.00 39.84 4.40
1887 1890 3.074094 TCCTATAGACCGACACTATGCCT 59.926 47.826 0.00 0.00 33.43 4.75
1888 1891 4.287845 TCCTATAGACCGACACTATGCCTA 59.712 45.833 0.00 0.00 33.43 3.93
1889 1892 5.045066 TCCTATAGACCGACACTATGCCTAT 60.045 44.000 0.00 0.00 33.43 2.57
1890 1893 5.066634 CCTATAGACCGACACTATGCCTATG 59.933 48.000 0.00 0.00 33.43 2.23
1891 1894 2.667470 AGACCGACACTATGCCTATGT 58.333 47.619 0.00 0.00 0.00 2.29
1892 1895 2.623889 AGACCGACACTATGCCTATGTC 59.376 50.000 0.00 0.00 39.50 3.06
1897 1900 3.643763 GACACTATGCCTATGTCGAAGG 58.356 50.000 0.00 0.00 33.94 3.46
1898 1901 2.365617 ACACTATGCCTATGTCGAAGGG 59.634 50.000 3.86 0.00 34.46 3.95
1899 1902 1.971357 ACTATGCCTATGTCGAAGGGG 59.029 52.381 3.86 0.00 34.46 4.79
1900 1903 1.276421 CTATGCCTATGTCGAAGGGGG 59.724 57.143 3.86 0.00 34.46 5.40
1901 1904 0.694444 ATGCCTATGTCGAAGGGGGT 60.694 55.000 3.86 0.00 34.46 4.95
1902 1905 1.146263 GCCTATGTCGAAGGGGGTG 59.854 63.158 3.86 0.00 34.46 4.61
1903 1906 1.830145 CCTATGTCGAAGGGGGTGG 59.170 63.158 0.00 0.00 0.00 4.61
1904 1907 0.981277 CCTATGTCGAAGGGGGTGGT 60.981 60.000 0.00 0.00 0.00 4.16
1905 1908 0.178068 CTATGTCGAAGGGGGTGGTG 59.822 60.000 0.00 0.00 0.00 4.17
1906 1909 1.268992 TATGTCGAAGGGGGTGGTGG 61.269 60.000 0.00 0.00 0.00 4.61
1907 1910 2.926242 GTCGAAGGGGGTGGTGGA 60.926 66.667 0.00 0.00 0.00 4.02
1908 1911 2.124085 TCGAAGGGGGTGGTGGAT 59.876 61.111 0.00 0.00 0.00 3.41
1909 1912 1.993391 TCGAAGGGGGTGGTGGATC 60.993 63.158 0.00 0.00 0.00 3.36
1910 1913 2.590092 GAAGGGGGTGGTGGATCG 59.410 66.667 0.00 0.00 0.00 3.69
1911 1914 3.015145 AAGGGGGTGGTGGATCGG 61.015 66.667 0.00 0.00 0.00 4.18
1931 1934 2.819595 CGCAGGTTACGCTGCCAT 60.820 61.111 16.15 0.00 43.05 4.40
1932 1935 2.813179 CGCAGGTTACGCTGCCATC 61.813 63.158 16.15 0.00 43.05 3.51
1933 1936 2.472909 GCAGGTTACGCTGCCATCC 61.473 63.158 12.60 0.00 40.40 3.51
1934 1937 1.078497 CAGGTTACGCTGCCATCCA 60.078 57.895 0.00 0.00 0.00 3.41
1935 1938 0.464373 CAGGTTACGCTGCCATCCAT 60.464 55.000 0.00 0.00 0.00 3.41
1936 1939 0.464373 AGGTTACGCTGCCATCCATG 60.464 55.000 0.00 0.00 0.00 3.66
1937 1940 0.748005 GGTTACGCTGCCATCCATGT 60.748 55.000 0.00 0.00 0.00 3.21
1938 1941 1.094785 GTTACGCTGCCATCCATGTT 58.905 50.000 0.00 0.00 0.00 2.71
1939 1942 1.093972 TTACGCTGCCATCCATGTTG 58.906 50.000 0.00 0.00 0.00 3.33
1940 1943 0.747644 TACGCTGCCATCCATGTTGG 60.748 55.000 7.42 7.42 39.43 3.77
1941 1944 2.777972 CGCTGCCATCCATGTTGGG 61.778 63.158 12.46 2.37 38.32 4.12
1942 1945 1.380246 GCTGCCATCCATGTTGGGA 60.380 57.895 12.46 9.34 42.21 4.37
1943 1946 0.971959 GCTGCCATCCATGTTGGGAA 60.972 55.000 12.46 0.00 41.12 3.97
1944 1947 1.559368 CTGCCATCCATGTTGGGAAA 58.441 50.000 12.46 0.00 41.12 3.13
1945 1948 1.901159 CTGCCATCCATGTTGGGAAAA 59.099 47.619 12.46 0.00 41.12 2.29
1946 1949 2.302445 CTGCCATCCATGTTGGGAAAAA 59.698 45.455 12.46 0.00 41.12 1.94
1961 1964 3.334413 AAAAACCTCCGTAGCCACC 57.666 52.632 0.00 0.00 0.00 4.61
1962 1965 0.769247 AAAAACCTCCGTAGCCACCT 59.231 50.000 0.00 0.00 0.00 4.00
1963 1966 0.036306 AAAACCTCCGTAGCCACCTG 59.964 55.000 0.00 0.00 0.00 4.00
1964 1967 2.465055 AAACCTCCGTAGCCACCTGC 62.465 60.000 0.00 0.00 41.71 4.85
1973 1976 4.567318 GCCACCTGCTCCAATAGG 57.433 61.111 0.00 0.00 40.01 2.57
1974 1977 1.825622 GCCACCTGCTCCAATAGGC 60.826 63.158 0.00 0.00 37.61 3.93
1975 1978 1.152881 CCACCTGCTCCAATAGGCC 60.153 63.158 0.00 0.00 37.61 5.19
1976 1979 1.639635 CCACCTGCTCCAATAGGCCT 61.640 60.000 11.78 11.78 37.61 5.19
1977 1980 1.131638 CACCTGCTCCAATAGGCCTA 58.868 55.000 16.60 16.60 37.61 3.93
1978 1981 1.071385 CACCTGCTCCAATAGGCCTAG 59.929 57.143 19.33 6.89 37.61 3.02
1979 1982 1.344496 ACCTGCTCCAATAGGCCTAGT 60.344 52.381 19.33 13.61 37.61 2.57
1980 1983 1.771255 CCTGCTCCAATAGGCCTAGTT 59.229 52.381 19.33 9.81 33.74 2.24
1981 1984 2.972713 CCTGCTCCAATAGGCCTAGTTA 59.027 50.000 19.33 5.26 33.74 2.24
1982 1985 3.584848 CCTGCTCCAATAGGCCTAGTTAT 59.415 47.826 19.33 0.00 33.74 1.89
1983 1986 4.323104 CCTGCTCCAATAGGCCTAGTTATC 60.323 50.000 19.33 6.23 33.74 1.75
1984 1987 4.231273 TGCTCCAATAGGCCTAGTTATCA 58.769 43.478 19.33 8.73 33.74 2.15
1985 1988 4.284490 TGCTCCAATAGGCCTAGTTATCAG 59.716 45.833 19.33 9.03 33.74 2.90
1986 1989 4.284746 GCTCCAATAGGCCTAGTTATCAGT 59.715 45.833 19.33 0.00 33.74 3.41
1987 1990 5.480772 GCTCCAATAGGCCTAGTTATCAGTA 59.519 44.000 19.33 0.00 33.74 2.74
1988 1991 6.572703 GCTCCAATAGGCCTAGTTATCAGTAC 60.573 46.154 19.33 0.00 33.74 2.73
1989 1992 6.378745 TCCAATAGGCCTAGTTATCAGTACA 58.621 40.000 19.33 0.00 33.74 2.90
1994 1997 8.951614 ATAGGCCTAGTTATCAGTACATACAA 57.048 34.615 19.33 0.00 0.00 2.41
2016 2019 5.745312 AATCACTGAGTGTCCACAAGATA 57.255 39.130 12.93 0.00 34.79 1.98
2032 2035 7.665559 TCCACAAGATAGTGCTCAAAAACTAAT 59.334 33.333 0.00 0.00 38.18 1.73
2045 2048 5.705441 TCAAAAACTAATCGAGGCACAAGAT 59.295 36.000 0.00 0.00 0.00 2.40
2075 2078 4.752879 GAGGCGGCTGCGGTGTAA 62.753 66.667 19.63 0.00 44.10 2.41
2076 2079 4.323477 AGGCGGCTGCGGTGTAAA 62.323 61.111 12.25 0.00 44.10 2.01
2097 2100 3.942130 AAAAGTTGAATAGTGCCAGGC 57.058 42.857 3.66 3.66 0.00 4.85
2115 2118 3.871594 CAGGCGAGGTCTATGGTTTTAAG 59.128 47.826 0.00 0.00 0.00 1.85
2118 2121 3.203716 CGAGGTCTATGGTTTTAAGGGC 58.796 50.000 0.00 0.00 0.00 5.19
2137 2140 2.289565 GCCCTCTTAAGGTTCGATTGG 58.710 52.381 1.85 0.00 41.59 3.16
2139 2142 2.238898 CCCTCTTAAGGTTCGATTGGGT 59.761 50.000 1.85 0.00 41.59 4.51
2144 2147 6.057321 TCTTAAGGTTCGATTGGGTTGTAT 57.943 37.500 1.85 0.00 0.00 2.29
2158 2161 4.019321 TGGGTTGTATGGGAAGAAGAAGAG 60.019 45.833 0.00 0.00 0.00 2.85
2232 2271 9.100197 AGTTAATATTCATGGGGAAAAACTTGT 57.900 29.630 0.00 0.00 39.39 3.16
2241 2280 2.866156 GGGAAAAACTTGTGAGCAAAGC 59.134 45.455 0.00 0.00 33.73 3.51
2258 2297 4.686091 GCAAAGCCAAAAAGTATCAAGGTC 59.314 41.667 0.00 0.00 0.00 3.85
2279 2326 4.711980 GCATCTGCAGCAATCAGC 57.288 55.556 9.47 2.54 46.19 4.26
2317 2364 4.542662 AAGTATCAAGATCGTTGCATGC 57.457 40.909 11.82 11.82 0.00 4.06
2318 2365 3.534554 AGTATCAAGATCGTTGCATGCA 58.465 40.909 18.46 18.46 0.00 3.96
2319 2366 4.132336 AGTATCAAGATCGTTGCATGCAT 58.868 39.130 23.37 6.15 0.00 3.96
2320 2367 5.299949 AGTATCAAGATCGTTGCATGCATA 58.700 37.500 23.37 10.83 0.00 3.14
2321 2368 5.759763 AGTATCAAGATCGTTGCATGCATAA 59.240 36.000 23.37 10.44 0.00 1.90
2322 2369 4.277257 TCAAGATCGTTGCATGCATAAC 57.723 40.909 23.37 16.77 0.00 1.89
2323 2370 3.940852 TCAAGATCGTTGCATGCATAACT 59.059 39.130 23.37 13.46 0.00 2.24
2324 2371 3.957671 AGATCGTTGCATGCATAACTG 57.042 42.857 23.37 13.43 0.00 3.16
2325 2372 2.615447 AGATCGTTGCATGCATAACTGG 59.385 45.455 23.37 6.16 0.00 4.00
2326 2373 1.093972 TCGTTGCATGCATAACTGGG 58.906 50.000 23.37 5.44 0.00 4.45
2327 2374 0.526096 CGTTGCATGCATAACTGGGC 60.526 55.000 23.37 0.00 0.00 5.36
2328 2375 0.819582 GTTGCATGCATAACTGGGCT 59.180 50.000 23.37 0.00 0.00 5.19
2329 2376 2.023673 GTTGCATGCATAACTGGGCTA 58.976 47.619 23.37 0.00 0.00 3.93
2330 2377 2.624838 GTTGCATGCATAACTGGGCTAT 59.375 45.455 23.37 0.00 0.00 2.97
2331 2378 3.786368 TGCATGCATAACTGGGCTATA 57.214 42.857 18.46 0.00 0.00 1.31
2332 2379 4.305539 TGCATGCATAACTGGGCTATAT 57.694 40.909 18.46 0.00 0.00 0.86
2333 2380 5.434182 TGCATGCATAACTGGGCTATATA 57.566 39.130 18.46 0.00 0.00 0.86
2334 2381 6.005066 TGCATGCATAACTGGGCTATATAT 57.995 37.500 18.46 0.00 0.00 0.86
2335 2382 5.824097 TGCATGCATAACTGGGCTATATATG 59.176 40.000 18.46 0.00 0.00 1.78
2336 2383 5.824624 GCATGCATAACTGGGCTATATATGT 59.175 40.000 14.21 0.00 0.00 2.29
2337 2384 6.319658 GCATGCATAACTGGGCTATATATGTT 59.680 38.462 14.21 0.00 0.00 2.71
2338 2385 7.467811 GCATGCATAACTGGGCTATATATGTTC 60.468 40.741 14.21 0.00 0.00 3.18
2339 2386 7.257790 TGCATAACTGGGCTATATATGTTCT 57.742 36.000 0.00 0.00 0.00 3.01
2340 2387 7.105588 TGCATAACTGGGCTATATATGTTCTG 58.894 38.462 0.00 0.00 0.00 3.02
2341 2388 6.540189 GCATAACTGGGCTATATATGTTCTGG 59.460 42.308 0.00 0.00 0.00 3.86
2342 2389 5.505181 AACTGGGCTATATATGTTCTGGG 57.495 43.478 0.00 0.00 0.00 4.45
2343 2390 3.846588 ACTGGGCTATATATGTTCTGGGG 59.153 47.826 0.00 0.00 0.00 4.96
2344 2391 2.576191 TGGGCTATATATGTTCTGGGGC 59.424 50.000 0.00 0.00 0.00 5.80
2345 2392 2.846827 GGGCTATATATGTTCTGGGGCT 59.153 50.000 0.00 0.00 0.00 5.19
2346 2393 3.370953 GGGCTATATATGTTCTGGGGCTG 60.371 52.174 0.00 0.00 0.00 4.85
2347 2394 3.370953 GGCTATATATGTTCTGGGGCTGG 60.371 52.174 0.00 0.00 0.00 4.85
2348 2395 3.370953 GCTATATATGTTCTGGGGCTGGG 60.371 52.174 0.00 0.00 0.00 4.45
2349 2396 2.505672 TATATGTTCTGGGGCTGGGA 57.494 50.000 0.00 0.00 0.00 4.37
2350 2397 1.838611 ATATGTTCTGGGGCTGGGAT 58.161 50.000 0.00 0.00 0.00 3.85
2351 2398 1.140312 TATGTTCTGGGGCTGGGATC 58.860 55.000 0.00 0.00 0.00 3.36
2352 2399 0.920763 ATGTTCTGGGGCTGGGATCA 60.921 55.000 0.00 0.00 0.00 2.92
2353 2400 1.139498 TGTTCTGGGGCTGGGATCAA 61.139 55.000 0.00 0.00 0.00 2.57
2354 2401 0.259938 GTTCTGGGGCTGGGATCAAT 59.740 55.000 0.00 0.00 0.00 2.57
2355 2402 1.009997 TTCTGGGGCTGGGATCAATT 58.990 50.000 0.00 0.00 0.00 2.32
2356 2403 0.259647 TCTGGGGCTGGGATCAATTG 59.740 55.000 0.00 0.00 0.00 2.32
2357 2404 0.757935 CTGGGGCTGGGATCAATTGG 60.758 60.000 5.42 0.00 0.00 3.16
2358 2405 1.311059 GGGGCTGGGATCAATTGGT 59.689 57.895 5.42 0.00 0.00 3.67
2359 2406 0.555769 GGGGCTGGGATCAATTGGTA 59.444 55.000 5.42 0.00 0.00 3.25
2360 2407 1.479389 GGGGCTGGGATCAATTGGTAG 60.479 57.143 5.42 0.00 0.00 3.18
2361 2408 1.479389 GGGCTGGGATCAATTGGTAGG 60.479 57.143 5.42 0.00 0.00 3.18
2362 2409 1.322442 GCTGGGATCAATTGGTAGGC 58.678 55.000 5.42 0.00 0.00 3.93
2363 2410 1.410083 GCTGGGATCAATTGGTAGGCA 60.410 52.381 5.42 0.00 0.00 4.75
2364 2411 2.754186 GCTGGGATCAATTGGTAGGCAT 60.754 50.000 5.42 0.00 0.00 4.40
2365 2412 3.569491 CTGGGATCAATTGGTAGGCATT 58.431 45.455 5.42 0.00 0.00 3.56
2366 2413 4.728772 CTGGGATCAATTGGTAGGCATTA 58.271 43.478 5.42 0.00 0.00 1.90
2367 2414 4.469657 TGGGATCAATTGGTAGGCATTAC 58.530 43.478 5.42 0.00 0.00 1.89
2368 2415 4.167892 TGGGATCAATTGGTAGGCATTACT 59.832 41.667 5.42 0.00 32.61 2.24
2369 2416 5.371176 TGGGATCAATTGGTAGGCATTACTA 59.629 40.000 5.42 0.00 32.61 1.82
2370 2417 5.705905 GGGATCAATTGGTAGGCATTACTAC 59.294 44.000 5.42 0.00 42.00 2.73
2371 2418 6.465894 GGGATCAATTGGTAGGCATTACTACT 60.466 42.308 5.42 0.00 42.29 2.57
2372 2419 7.256547 GGGATCAATTGGTAGGCATTACTACTA 60.257 40.741 5.42 0.00 42.29 1.82
2373 2420 8.154856 GGATCAATTGGTAGGCATTACTACTAA 58.845 37.037 5.42 4.96 44.75 2.24
2374 2421 9.209175 GATCAATTGGTAGGCATTACTACTAAG 57.791 37.037 5.42 0.00 44.17 2.18
2375 2422 8.086143 TCAATTGGTAGGCATTACTACTAAGT 57.914 34.615 5.42 3.28 44.17 2.24
2376 2423 8.545472 TCAATTGGTAGGCATTACTACTAAGTT 58.455 33.333 5.42 1.97 44.17 2.66
2377 2424 8.612619 CAATTGGTAGGCATTACTACTAAGTTG 58.387 37.037 0.00 8.28 44.17 3.16
2378 2425 5.667466 TGGTAGGCATTACTACTAAGTTGC 58.333 41.667 0.00 0.00 42.29 4.17
2384 2431 6.927294 GCATTACTACTAAGTTGCCTTCAT 57.073 37.500 0.00 0.00 34.65 2.57
2385 2432 6.719365 GCATTACTACTAAGTTGCCTTCATG 58.281 40.000 0.00 0.00 34.65 3.07
2386 2433 6.719365 CATTACTACTAAGTTGCCTTCATGC 58.281 40.000 0.00 0.00 37.15 4.06
2387 2434 4.286297 ACTACTAAGTTGCCTTCATGCA 57.714 40.909 0.00 0.00 40.07 3.96
2388 2435 4.848357 ACTACTAAGTTGCCTTCATGCAT 58.152 39.130 0.00 0.00 41.70 3.96
2389 2436 4.637534 ACTACTAAGTTGCCTTCATGCATG 59.362 41.667 21.07 21.07 41.70 4.06
2390 2437 2.756760 ACTAAGTTGCCTTCATGCATGG 59.243 45.455 25.97 11.94 41.70 3.66
2391 2438 1.927487 AAGTTGCCTTCATGCATGGA 58.073 45.000 25.97 17.63 41.70 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.116707 TCTTGAGGTAGGGGATCCTAAGG 60.117 52.174 12.58 0.00 46.39 2.69
52 53 2.157668 CGGACGGAATCAAAACAGACAG 59.842 50.000 0.00 0.00 0.00 3.51
55 56 2.823924 TCGGACGGAATCAAAACAGA 57.176 45.000 0.00 0.00 0.00 3.41
57 58 2.486203 CCATTCGGACGGAATCAAAACA 59.514 45.455 5.33 0.00 43.52 2.83
100 101 4.134563 GTCAAGCAAAGTAAAGGGTCAGA 58.865 43.478 0.00 0.00 0.00 3.27
111 112 4.251246 TTGCCCGTCAAGCAAAGT 57.749 50.000 0.00 0.00 46.71 2.66
158 159 9.872757 TTGAATGTATTTTCGTCTACTCAAAAC 57.127 29.630 0.00 0.00 0.00 2.43
281 282 8.421002 ACAAATAAAGTTGTCAACCTTGCTAAT 58.579 29.630 12.17 0.00 37.10 1.73
282 283 7.704472 CACAAATAAAGTTGTCAACCTTGCTAA 59.296 33.333 12.17 0.00 39.73 3.09
297 298 5.144100 TGTCCCCATCAACACAAATAAAGT 58.856 37.500 0.00 0.00 0.00 2.66
336 337 8.313292 ACACCAATGATAAGTTTTGCAATACAT 58.687 29.630 20.04 12.02 0.00 2.29
340 341 8.584157 TCTTACACCAATGATAAGTTTTGCAAT 58.416 29.630 0.00 0.00 0.00 3.56
372 373 2.299297 CGGTATGGATCCTTGGAGGTAC 59.701 54.545 14.23 0.42 36.53 3.34
411 412 7.604927 TGGTTTGTAGAAAGCGTCAAGTTATAT 59.395 33.333 9.64 0.00 41.60 0.86
412 413 6.930164 TGGTTTGTAGAAAGCGTCAAGTTATA 59.070 34.615 9.64 0.00 41.60 0.98
413 414 5.761234 TGGTTTGTAGAAAGCGTCAAGTTAT 59.239 36.000 9.64 0.00 41.60 1.89
414 415 5.117584 TGGTTTGTAGAAAGCGTCAAGTTA 58.882 37.500 9.64 0.00 41.60 2.24
415 416 3.942748 TGGTTTGTAGAAAGCGTCAAGTT 59.057 39.130 9.64 0.00 41.60 2.66
421 422 2.226330 TGCATGGTTTGTAGAAAGCGT 58.774 42.857 9.64 6.74 41.60 5.07
422 423 2.987413 TGCATGGTTTGTAGAAAGCG 57.013 45.000 9.64 0.00 41.60 4.68
423 424 5.106987 CCAAATTGCATGGTTTGTAGAAAGC 60.107 40.000 7.55 7.55 39.57 3.51
432 433 1.698532 TGAGCCCAAATTGCATGGTTT 59.301 42.857 4.19 0.00 36.14 3.27
437 438 2.620115 CGATAGTGAGCCCAAATTGCAT 59.380 45.455 0.00 0.00 0.00 3.96
456 457 4.188462 CAGGTGATATAACAAAGGCACGA 58.812 43.478 0.00 0.00 0.00 4.35
501 502 9.816354 AGTTAAAGCTTTTGTTCACATTACATT 57.184 25.926 18.47 0.00 0.00 2.71
516 517 9.788889 ACCAACATACTAAGTAGTTAAAGCTTT 57.211 29.630 17.30 17.30 37.73 3.51
526 527 8.936864 CAAGAAGGAAACCAACATACTAAGTAG 58.063 37.037 0.00 0.00 0.00 2.57
530 531 7.389607 GCTACAAGAAGGAAACCAACATACTAA 59.610 37.037 0.00 0.00 0.00 2.24
551 552 7.508687 ACATACATGTATTCAAGATGGCTACA 58.491 34.615 15.85 0.00 39.68 2.74
552 553 7.969536 ACATACATGTATTCAAGATGGCTAC 57.030 36.000 15.85 0.00 39.68 3.58
553 554 8.839343 CAAACATACATGTATTCAAGATGGCTA 58.161 33.333 15.85 0.00 40.80 3.93
554 555 7.340232 ACAAACATACATGTATTCAAGATGGCT 59.660 33.333 15.85 0.00 40.80 4.75
555 556 7.483307 ACAAACATACATGTATTCAAGATGGC 58.517 34.615 15.85 0.00 40.80 4.40
559 560 9.733556 AGGTTACAAACATACATGTATTCAAGA 57.266 29.630 15.85 0.00 40.80 3.02
566 567 9.426837 GTCACTTAGGTTACAAACATACATGTA 57.573 33.333 8.27 8.27 40.80 2.29
567 568 7.389607 GGTCACTTAGGTTACAAACATACATGT 59.610 37.037 2.69 2.69 44.20 3.21
568 569 7.606456 AGGTCACTTAGGTTACAAACATACATG 59.394 37.037 0.00 0.00 0.00 3.21
569 570 7.686434 AGGTCACTTAGGTTACAAACATACAT 58.314 34.615 0.00 0.00 0.00 2.29
570 571 7.069877 AGGTCACTTAGGTTACAAACATACA 57.930 36.000 0.00 0.00 0.00 2.29
571 572 7.876582 AGAAGGTCACTTAGGTTACAAACATAC 59.123 37.037 0.00 0.00 36.97 2.39
572 573 7.970102 AGAAGGTCACTTAGGTTACAAACATA 58.030 34.615 0.00 0.00 36.97 2.29
573 574 6.838382 AGAAGGTCACTTAGGTTACAAACAT 58.162 36.000 0.00 0.00 36.97 2.71
574 575 6.243216 AGAAGGTCACTTAGGTTACAAACA 57.757 37.500 0.00 0.00 36.97 2.83
575 576 8.843885 AATAGAAGGTCACTTAGGTTACAAAC 57.156 34.615 0.00 0.00 36.97 2.93
576 577 9.856162 AAAATAGAAGGTCACTTAGGTTACAAA 57.144 29.630 0.00 0.00 36.97 2.83
581 582 9.449719 CACATAAAATAGAAGGTCACTTAGGTT 57.550 33.333 0.00 0.00 36.97 3.50
582 583 8.603304 ACACATAAAATAGAAGGTCACTTAGGT 58.397 33.333 0.00 0.00 36.97 3.08
583 584 9.449719 AACACATAAAATAGAAGGTCACTTAGG 57.550 33.333 0.00 0.00 36.97 2.69
586 587 8.918202 TGAACACATAAAATAGAAGGTCACTT 57.082 30.769 0.00 0.00 40.34 3.16
587 588 8.950210 CATGAACACATAAAATAGAAGGTCACT 58.050 33.333 0.00 0.00 0.00 3.41
588 589 8.730680 ACATGAACACATAAAATAGAAGGTCAC 58.269 33.333 0.00 0.00 0.00 3.67
589 590 8.729756 CACATGAACACATAAAATAGAAGGTCA 58.270 33.333 0.00 0.00 0.00 4.02
590 591 8.730680 ACACATGAACACATAAAATAGAAGGTC 58.269 33.333 0.00 0.00 0.00 3.85
591 592 8.635765 ACACATGAACACATAAAATAGAAGGT 57.364 30.769 0.00 0.00 0.00 3.50
592 593 9.912634 AAACACATGAACACATAAAATAGAAGG 57.087 29.630 0.00 0.00 0.00 3.46
603 604 9.979578 ACATTGTTAATAAACACATGAACACAT 57.020 25.926 0.00 0.00 45.18 3.21
604 605 9.809096 AACATTGTTAATAAACACATGAACACA 57.191 25.926 0.00 0.00 45.18 3.72
628 629 9.455847 GAATCTTCATATGGCATCAAAACTAAC 57.544 33.333 1.65 0.00 0.00 2.34
657 658 3.130869 TGCACATGGATAGGTGAAAATGC 59.869 43.478 0.00 0.00 40.90 3.56
661 662 4.406456 AGTTTGCACATGGATAGGTGAAA 58.594 39.130 0.00 0.00 40.90 2.69
705 706 2.872858 GAGCATTAATGACCCCTCGAAC 59.127 50.000 19.73 0.00 0.00 3.95
768 769 5.703130 AGGTAAGAAAGAGTGCAAAGCTAAG 59.297 40.000 0.00 0.00 0.00 2.18
811 813 7.509546 TGTAAGGCCCATTGAAATTAAAACAA 58.490 30.769 0.00 0.00 0.00 2.83
812 814 7.067496 TGTAAGGCCCATTGAAATTAAAACA 57.933 32.000 0.00 0.00 0.00 2.83
818 820 6.496911 AGTTAGTTGTAAGGCCCATTGAAATT 59.503 34.615 0.00 0.00 0.00 1.82
819 821 6.016555 AGTTAGTTGTAAGGCCCATTGAAAT 58.983 36.000 0.00 0.00 0.00 2.17
820 822 5.390387 AGTTAGTTGTAAGGCCCATTGAAA 58.610 37.500 0.00 0.00 0.00 2.69
821 823 4.993028 AGTTAGTTGTAAGGCCCATTGAA 58.007 39.130 0.00 0.00 0.00 2.69
822 824 4.650972 AGTTAGTTGTAAGGCCCATTGA 57.349 40.909 0.00 0.00 0.00 2.57
823 825 7.404671 AAATAGTTAGTTGTAAGGCCCATTG 57.595 36.000 0.00 0.00 0.00 2.82
824 826 9.131791 CATAAATAGTTAGTTGTAAGGCCCATT 57.868 33.333 0.00 0.00 0.00 3.16
825 827 7.724061 CCATAAATAGTTAGTTGTAAGGCCCAT 59.276 37.037 0.00 0.00 0.00 4.00
863 865 9.374838 CCGTAGACACCATAAATAGTTAGTTTT 57.625 33.333 0.00 0.00 0.00 2.43
864 866 8.534496 ACCGTAGACACCATAAATAGTTAGTTT 58.466 33.333 0.00 0.00 0.00 2.66
865 867 7.977853 CACCGTAGACACCATAAATAGTTAGTT 59.022 37.037 0.00 0.00 0.00 2.24
866 868 7.486647 CACCGTAGACACCATAAATAGTTAGT 58.513 38.462 0.00 0.00 0.00 2.24
867 869 6.420008 GCACCGTAGACACCATAAATAGTTAG 59.580 42.308 0.00 0.00 0.00 2.34
868 870 6.127394 TGCACCGTAGACACCATAAATAGTTA 60.127 38.462 0.00 0.00 0.00 2.24
869 871 5.114081 GCACCGTAGACACCATAAATAGTT 58.886 41.667 0.00 0.00 0.00 2.24
870 872 4.160814 TGCACCGTAGACACCATAAATAGT 59.839 41.667 0.00 0.00 0.00 2.12
871 873 4.689071 TGCACCGTAGACACCATAAATAG 58.311 43.478 0.00 0.00 0.00 1.73
872 874 4.739587 TGCACCGTAGACACCATAAATA 57.260 40.909 0.00 0.00 0.00 1.40
873 875 3.620427 TGCACCGTAGACACCATAAAT 57.380 42.857 0.00 0.00 0.00 1.40
874 876 3.007074 TCTTGCACCGTAGACACCATAAA 59.993 43.478 0.00 0.00 0.00 1.40
875 877 2.563620 TCTTGCACCGTAGACACCATAA 59.436 45.455 0.00 0.00 0.00 1.90
876 878 2.172679 TCTTGCACCGTAGACACCATA 58.827 47.619 0.00 0.00 0.00 2.74
877 879 0.973632 TCTTGCACCGTAGACACCAT 59.026 50.000 0.00 0.00 0.00 3.55
878 880 0.753867 TTCTTGCACCGTAGACACCA 59.246 50.000 0.00 0.00 0.00 4.17
879 881 1.145803 GTTCTTGCACCGTAGACACC 58.854 55.000 0.00 0.00 0.00 4.16
880 882 0.782384 CGTTCTTGCACCGTAGACAC 59.218 55.000 0.00 0.00 0.00 3.67
881 883 0.942410 GCGTTCTTGCACCGTAGACA 60.942 55.000 0.00 0.00 34.15 3.41
887 889 0.096976 CTTATGGCGTTCTTGCACCG 59.903 55.000 0.00 0.00 36.28 4.94
917 919 0.322322 TGTACTTGGGTGCCCTAACG 59.678 55.000 8.91 0.00 36.94 3.18
924 926 2.226330 TGATGTTGTGTACTTGGGTGC 58.774 47.619 0.00 0.00 0.00 5.01
933 935 9.936759 TCAAGAATGTAGTAATGATGTTGTGTA 57.063 29.630 0.00 0.00 0.00 2.90
990 992 3.142951 CACGGGTTCCATTGTAGAACAA 58.857 45.455 6.04 0.00 44.40 2.83
999 1001 0.328258 CCTTCCTCACGGGTTCCATT 59.672 55.000 0.00 0.00 36.25 3.16
1008 1010 1.308069 CCACAATGGCCTTCCTCACG 61.308 60.000 3.32 0.00 0.00 4.35
1010 1012 1.383799 CCCACAATGGCCTTCCTCA 59.616 57.895 3.32 0.00 35.79 3.86
1018 1020 1.047801 AGGAAAACACCCACAATGGC 58.952 50.000 0.00 0.00 35.79 4.40
1031 1033 6.096846 GGCCATAAGCAAGATAAGAAGGAAAA 59.903 38.462 0.00 0.00 46.50 2.29
1097 1099 7.811236 GCACAAGTACTAACACAACACTATAGA 59.189 37.037 6.78 0.00 0.00 1.98
1136 1138 7.094377 ACAAGTACCATCAATGTGGATAACAAC 60.094 37.037 8.46 0.00 43.61 3.32
1237 1239 1.743772 CGTTCTCCCTACCCATGCAAG 60.744 57.143 0.00 0.00 0.00 4.01
1256 1258 2.089017 TGCATGTCGGCAATCTTCG 58.911 52.632 0.00 0.00 41.65 3.79
1428 1430 4.955811 AACTTGGATGGATAGTCGCATA 57.044 40.909 0.00 0.00 0.00 3.14
1437 1439 8.019656 ACGAAATAGTAGTAACTTGGATGGAT 57.980 34.615 0.00 0.00 37.15 3.41
1499 1501 9.426837 ACAATCTTGAACACAAAATTATCCATG 57.573 29.630 0.00 0.00 0.00 3.66
1500 1502 9.643693 GACAATCTTGAACACAAAATTATCCAT 57.356 29.630 0.00 0.00 0.00 3.41
1501 1503 8.859090 AGACAATCTTGAACACAAAATTATCCA 58.141 29.630 0.00 0.00 0.00 3.41
1508 1510 9.921637 AAGTTTTAGACAATCTTGAACACAAAA 57.078 25.926 0.00 0.85 0.00 2.44
1509 1511 9.921637 AAAGTTTTAGACAATCTTGAACACAAA 57.078 25.926 0.00 0.00 0.00 2.83
1536 1538 4.831155 CCATAGCATCCCAATCTTGAACAT 59.169 41.667 0.00 0.00 0.00 2.71
1538 1540 4.464008 TCCATAGCATCCCAATCTTGAAC 58.536 43.478 0.00 0.00 0.00 3.18
1544 1546 7.288810 TGTATTTTTCCATAGCATCCCAATC 57.711 36.000 0.00 0.00 0.00 2.67
1632 1635 6.347240 GCATGCTAGCAGAGTGTCAAATATAC 60.347 42.308 23.89 0.00 0.00 1.47
1636 1639 2.681848 GCATGCTAGCAGAGTGTCAAAT 59.318 45.455 23.89 0.00 0.00 2.32
1655 1658 9.955208 GACATTATCAAATAACAAGATGATGCA 57.045 29.630 0.00 0.00 38.55 3.96
1709 1712 8.795842 TTTTGAGATAATAAAGTCGCCCTTTA 57.204 30.769 8.83 8.83 46.78 1.85
1710 1713 7.696992 TTTTGAGATAATAAAGTCGCCCTTT 57.303 32.000 5.44 5.44 45.36 3.11
1711 1714 7.339466 ACATTTTGAGATAATAAAGTCGCCCTT 59.661 33.333 0.00 0.00 33.79 3.95
1712 1715 6.828785 ACATTTTGAGATAATAAAGTCGCCCT 59.171 34.615 0.00 0.00 0.00 5.19
1713 1716 7.027778 ACATTTTGAGATAATAAAGTCGCCC 57.972 36.000 0.00 0.00 0.00 6.13
1714 1717 7.798982 GCTACATTTTGAGATAATAAAGTCGCC 59.201 37.037 0.00 0.00 0.00 5.54
1715 1718 8.335356 TGCTACATTTTGAGATAATAAAGTCGC 58.665 33.333 0.00 0.00 0.00 5.19
1722 1725 8.498358 CGCTTGATGCTACATTTTGAGATAATA 58.502 33.333 0.00 0.00 40.11 0.98
1723 1726 7.358066 CGCTTGATGCTACATTTTGAGATAAT 58.642 34.615 0.00 0.00 40.11 1.28
1724 1727 6.238456 CCGCTTGATGCTACATTTTGAGATAA 60.238 38.462 0.00 0.00 40.11 1.75
1725 1728 5.237127 CCGCTTGATGCTACATTTTGAGATA 59.763 40.000 0.00 0.00 40.11 1.98
1726 1729 4.036027 CCGCTTGATGCTACATTTTGAGAT 59.964 41.667 0.00 0.00 40.11 2.75
1727 1730 3.374988 CCGCTTGATGCTACATTTTGAGA 59.625 43.478 0.00 0.00 40.11 3.27
1728 1731 3.374988 TCCGCTTGATGCTACATTTTGAG 59.625 43.478 0.00 0.00 40.11 3.02
1729 1732 3.342719 TCCGCTTGATGCTACATTTTGA 58.657 40.909 0.00 0.00 40.11 2.69
1730 1733 3.763097 TCCGCTTGATGCTACATTTTG 57.237 42.857 0.00 0.00 40.11 2.44
1731 1734 4.881273 TGTATCCGCTTGATGCTACATTTT 59.119 37.500 3.59 0.00 37.04 1.82
1732 1735 4.450976 TGTATCCGCTTGATGCTACATTT 58.549 39.130 3.59 0.00 37.04 2.32
1733 1736 4.060900 CTGTATCCGCTTGATGCTACATT 58.939 43.478 3.59 0.00 37.04 2.71
1734 1737 3.321968 TCTGTATCCGCTTGATGCTACAT 59.678 43.478 3.59 0.00 37.04 2.29
1735 1738 2.693074 TCTGTATCCGCTTGATGCTACA 59.307 45.455 3.59 0.00 37.04 2.74
1736 1739 3.312828 CTCTGTATCCGCTTGATGCTAC 58.687 50.000 3.59 0.00 37.04 3.58
1737 1740 2.288457 GCTCTGTATCCGCTTGATGCTA 60.288 50.000 3.59 0.00 37.04 3.49
1738 1741 1.539929 GCTCTGTATCCGCTTGATGCT 60.540 52.381 3.59 0.00 37.04 3.79
1739 1742 0.864455 GCTCTGTATCCGCTTGATGC 59.136 55.000 0.00 0.00 36.68 3.91
1740 1743 2.229675 TGCTCTGTATCCGCTTGATG 57.770 50.000 0.00 0.00 34.76 3.07
1741 1744 3.482156 AATGCTCTGTATCCGCTTGAT 57.518 42.857 0.00 0.00 37.49 2.57
1742 1745 2.988010 AATGCTCTGTATCCGCTTGA 57.012 45.000 0.00 0.00 0.00 3.02
1743 1746 4.309933 TCATAATGCTCTGTATCCGCTTG 58.690 43.478 0.00 0.00 0.00 4.01
1744 1747 4.039730 ACTCATAATGCTCTGTATCCGCTT 59.960 41.667 0.00 0.00 0.00 4.68
1745 1748 3.576118 ACTCATAATGCTCTGTATCCGCT 59.424 43.478 0.00 0.00 0.00 5.52
1746 1749 3.919216 ACTCATAATGCTCTGTATCCGC 58.081 45.455 0.00 0.00 0.00 5.54
1747 1750 6.363626 GTGTTACTCATAATGCTCTGTATCCG 59.636 42.308 0.00 0.00 0.00 4.18
1748 1751 6.647067 GGTGTTACTCATAATGCTCTGTATCC 59.353 42.308 0.00 0.00 0.00 2.59
1749 1752 6.647067 GGGTGTTACTCATAATGCTCTGTATC 59.353 42.308 0.00 0.00 0.00 2.24
1750 1753 6.525629 GGGTGTTACTCATAATGCTCTGTAT 58.474 40.000 0.00 0.00 0.00 2.29
1751 1754 5.451381 CGGGTGTTACTCATAATGCTCTGTA 60.451 44.000 0.00 0.00 0.00 2.74
1752 1755 4.680708 CGGGTGTTACTCATAATGCTCTGT 60.681 45.833 0.00 0.00 0.00 3.41
1753 1756 3.804325 CGGGTGTTACTCATAATGCTCTG 59.196 47.826 0.00 0.00 0.00 3.35
1754 1757 3.181465 CCGGGTGTTACTCATAATGCTCT 60.181 47.826 0.00 0.00 0.00 4.09
1755 1758 3.131396 CCGGGTGTTACTCATAATGCTC 58.869 50.000 0.00 0.00 0.00 4.26
1756 1759 2.745152 GCCGGGTGTTACTCATAATGCT 60.745 50.000 2.18 0.00 0.00 3.79
1757 1760 1.602377 GCCGGGTGTTACTCATAATGC 59.398 52.381 2.18 0.00 0.00 3.56
1758 1761 2.158813 AGGCCGGGTGTTACTCATAATG 60.159 50.000 2.18 0.00 0.00 1.90
1759 1762 2.104281 GAGGCCGGGTGTTACTCATAAT 59.896 50.000 2.18 0.00 0.00 1.28
1760 1763 1.483415 GAGGCCGGGTGTTACTCATAA 59.517 52.381 2.18 0.00 0.00 1.90
1761 1764 1.117150 GAGGCCGGGTGTTACTCATA 58.883 55.000 2.18 0.00 0.00 2.15
1762 1765 0.617820 AGAGGCCGGGTGTTACTCAT 60.618 55.000 2.18 0.00 0.00 2.90
1763 1766 1.229082 AGAGGCCGGGTGTTACTCA 60.229 57.895 2.18 0.00 0.00 3.41
1764 1767 1.218316 CAGAGGCCGGGTGTTACTC 59.782 63.158 2.18 0.00 0.00 2.59
1765 1768 2.955881 GCAGAGGCCGGGTGTTACT 61.956 63.158 2.18 0.00 0.00 2.24
1766 1769 2.436115 GCAGAGGCCGGGTGTTAC 60.436 66.667 2.18 0.00 0.00 2.50
1767 1770 0.978667 TATGCAGAGGCCGGGTGTTA 60.979 55.000 2.18 0.00 40.13 2.41
1768 1771 1.847798 TTATGCAGAGGCCGGGTGTT 61.848 55.000 2.18 0.00 40.13 3.32
1769 1772 2.297895 TTATGCAGAGGCCGGGTGT 61.298 57.895 2.18 0.00 40.13 4.16
1770 1773 1.819632 GTTATGCAGAGGCCGGGTG 60.820 63.158 2.18 0.00 40.13 4.61
1771 1774 0.689745 TAGTTATGCAGAGGCCGGGT 60.690 55.000 2.18 0.00 40.13 5.28
1772 1775 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
1773 1776 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
1774 1777 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
1783 1786 8.746922 ATTTTGTTGTGTGCATCTTAGTTATG 57.253 30.769 0.00 0.00 0.00 1.90
1784 1787 8.028938 GGATTTTGTTGTGTGCATCTTAGTTAT 58.971 33.333 0.00 0.00 0.00 1.89
1785 1788 7.013750 TGGATTTTGTTGTGTGCATCTTAGTTA 59.986 33.333 0.00 0.00 0.00 2.24
1786 1789 6.183360 TGGATTTTGTTGTGTGCATCTTAGTT 60.183 34.615 0.00 0.00 0.00 2.24
1787 1790 5.301551 TGGATTTTGTTGTGTGCATCTTAGT 59.698 36.000 0.00 0.00 0.00 2.24
1788 1791 5.771469 TGGATTTTGTTGTGTGCATCTTAG 58.229 37.500 0.00 0.00 0.00 2.18
1789 1792 5.534278 TCTGGATTTTGTTGTGTGCATCTTA 59.466 36.000 0.00 0.00 0.00 2.10
1790 1793 4.341806 TCTGGATTTTGTTGTGTGCATCTT 59.658 37.500 0.00 0.00 0.00 2.40
1791 1794 3.890756 TCTGGATTTTGTTGTGTGCATCT 59.109 39.130 0.00 0.00 0.00 2.90
1792 1795 4.241590 TCTGGATTTTGTTGTGTGCATC 57.758 40.909 0.00 0.00 0.00 3.91
1793 1796 4.099881 ACTTCTGGATTTTGTTGTGTGCAT 59.900 37.500 0.00 0.00 0.00 3.96
1794 1797 3.446873 ACTTCTGGATTTTGTTGTGTGCA 59.553 39.130 0.00 0.00 0.00 4.57
1795 1798 4.044426 GACTTCTGGATTTTGTTGTGTGC 58.956 43.478 0.00 0.00 0.00 4.57
1796 1799 5.276270 CAGACTTCTGGATTTTGTTGTGTG 58.724 41.667 0.00 0.00 40.20 3.82
1797 1800 5.505173 CAGACTTCTGGATTTTGTTGTGT 57.495 39.130 0.00 0.00 40.20 3.72
1827 1830 8.934825 CCAATTTGTCGATTTTTATTTCATGGT 58.065 29.630 0.00 0.00 0.00 3.55
1828 1831 7.904461 GCCAATTTGTCGATTTTTATTTCATGG 59.096 33.333 0.00 0.00 0.00 3.66
1829 1832 8.441608 TGCCAATTTGTCGATTTTTATTTCATG 58.558 29.630 0.00 0.00 0.00 3.07
1830 1833 8.545229 TGCCAATTTGTCGATTTTTATTTCAT 57.455 26.923 0.00 0.00 0.00 2.57
1831 1834 7.953158 TGCCAATTTGTCGATTTTTATTTCA 57.047 28.000 0.00 0.00 0.00 2.69
1832 1835 8.279103 TGTTGCCAATTTGTCGATTTTTATTTC 58.721 29.630 0.00 0.00 0.00 2.17
1833 1836 8.147642 TGTTGCCAATTTGTCGATTTTTATTT 57.852 26.923 0.00 0.00 0.00 1.40
1834 1837 7.440856 ACTGTTGCCAATTTGTCGATTTTTATT 59.559 29.630 0.00 0.00 0.00 1.40
1835 1838 6.928492 ACTGTTGCCAATTTGTCGATTTTTAT 59.072 30.769 0.00 0.00 0.00 1.40
1836 1839 6.276847 ACTGTTGCCAATTTGTCGATTTTTA 58.723 32.000 0.00 0.00 0.00 1.52
1837 1840 5.115480 ACTGTTGCCAATTTGTCGATTTTT 58.885 33.333 0.00 0.00 0.00 1.94
1838 1841 4.692228 ACTGTTGCCAATTTGTCGATTTT 58.308 34.783 0.00 0.00 0.00 1.82
1839 1842 4.320608 ACTGTTGCCAATTTGTCGATTT 57.679 36.364 0.00 0.00 0.00 2.17
1840 1843 4.759693 TCTACTGTTGCCAATTTGTCGATT 59.240 37.500 0.00 0.00 0.00 3.34
1841 1844 4.323417 TCTACTGTTGCCAATTTGTCGAT 58.677 39.130 0.00 0.00 0.00 3.59
1842 1845 3.734463 TCTACTGTTGCCAATTTGTCGA 58.266 40.909 0.00 0.00 0.00 4.20
1843 1846 3.498397 ACTCTACTGTTGCCAATTTGTCG 59.502 43.478 0.00 0.00 0.00 4.35
1844 1847 4.083271 GGACTCTACTGTTGCCAATTTGTC 60.083 45.833 0.00 0.00 0.00 3.18
1845 1848 3.821033 GGACTCTACTGTTGCCAATTTGT 59.179 43.478 0.00 0.00 0.00 2.83
1846 1849 4.074970 AGGACTCTACTGTTGCCAATTTG 58.925 43.478 0.00 0.00 0.00 2.32
1847 1850 4.373156 AGGACTCTACTGTTGCCAATTT 57.627 40.909 0.00 0.00 0.00 1.82
1848 1851 5.700402 ATAGGACTCTACTGTTGCCAATT 57.300 39.130 0.00 0.00 0.00 2.32
1849 1852 6.041069 GTCTATAGGACTCTACTGTTGCCAAT 59.959 42.308 0.00 0.00 41.46 3.16
1850 1853 5.360144 GTCTATAGGACTCTACTGTTGCCAA 59.640 44.000 0.00 0.00 41.46 4.52
1851 1854 4.888239 GTCTATAGGACTCTACTGTTGCCA 59.112 45.833 0.00 0.00 41.46 4.92
1852 1855 4.278919 GGTCTATAGGACTCTACTGTTGCC 59.721 50.000 0.00 0.00 43.97 4.52
1853 1856 4.023878 CGGTCTATAGGACTCTACTGTTGC 60.024 50.000 0.00 0.00 43.97 4.17
1854 1857 5.236911 GTCGGTCTATAGGACTCTACTGTTG 59.763 48.000 0.00 0.00 43.97 3.33
1855 1858 5.104610 TGTCGGTCTATAGGACTCTACTGTT 60.105 44.000 0.00 0.00 43.97 3.16
1856 1859 4.408270 TGTCGGTCTATAGGACTCTACTGT 59.592 45.833 0.00 0.00 43.97 3.55
1857 1860 4.751098 GTGTCGGTCTATAGGACTCTACTG 59.249 50.000 0.00 0.00 43.97 2.74
1858 1861 4.655186 AGTGTCGGTCTATAGGACTCTACT 59.345 45.833 0.00 0.00 43.97 2.57
1859 1862 4.959723 AGTGTCGGTCTATAGGACTCTAC 58.040 47.826 0.00 0.00 43.97 2.59
1860 1863 6.699366 CATAGTGTCGGTCTATAGGACTCTA 58.301 44.000 15.58 15.58 43.97 2.43
1861 1864 5.553123 CATAGTGTCGGTCTATAGGACTCT 58.447 45.833 13.29 13.29 43.97 3.24
1862 1865 4.154556 GCATAGTGTCGGTCTATAGGACTC 59.845 50.000 0.00 1.36 43.97 3.36
1863 1866 4.073549 GCATAGTGTCGGTCTATAGGACT 58.926 47.826 0.00 0.00 43.97 3.85
1864 1867 3.190953 GGCATAGTGTCGGTCTATAGGAC 59.809 52.174 0.00 0.46 43.79 3.85
1865 1868 3.074094 AGGCATAGTGTCGGTCTATAGGA 59.926 47.826 0.00 0.00 0.00 2.94
1866 1869 3.422796 AGGCATAGTGTCGGTCTATAGG 58.577 50.000 0.00 0.00 0.00 2.57
1867 1870 5.648526 ACATAGGCATAGTGTCGGTCTATAG 59.351 44.000 0.00 0.00 0.00 1.31
1868 1871 5.567430 ACATAGGCATAGTGTCGGTCTATA 58.433 41.667 0.00 0.00 0.00 1.31
1869 1872 4.408276 ACATAGGCATAGTGTCGGTCTAT 58.592 43.478 0.00 0.00 0.00 1.98
1870 1873 3.819337 GACATAGGCATAGTGTCGGTCTA 59.181 47.826 5.60 0.00 33.73 2.59
1871 1874 2.623889 GACATAGGCATAGTGTCGGTCT 59.376 50.000 5.60 0.00 33.73 3.85
1872 1875 3.014604 GACATAGGCATAGTGTCGGTC 57.985 52.381 5.60 0.00 33.73 4.79
1876 1879 3.553096 CCCTTCGACATAGGCATAGTGTC 60.553 52.174 9.48 9.48 39.02 3.67
1877 1880 2.365617 CCCTTCGACATAGGCATAGTGT 59.634 50.000 0.00 0.00 0.00 3.55
1878 1881 2.289072 CCCCTTCGACATAGGCATAGTG 60.289 54.545 0.00 0.00 0.00 2.74
1879 1882 1.971357 CCCCTTCGACATAGGCATAGT 59.029 52.381 0.00 0.00 0.00 2.12
1880 1883 1.276421 CCCCCTTCGACATAGGCATAG 59.724 57.143 0.00 0.00 0.00 2.23
1881 1884 1.348064 CCCCCTTCGACATAGGCATA 58.652 55.000 0.00 0.00 0.00 3.14
1882 1885 0.694444 ACCCCCTTCGACATAGGCAT 60.694 55.000 0.00 0.00 0.00 4.40
1883 1886 1.306654 ACCCCCTTCGACATAGGCA 60.307 57.895 0.00 0.00 0.00 4.75
1884 1887 1.146263 CACCCCCTTCGACATAGGC 59.854 63.158 0.00 0.00 0.00 3.93
1885 1888 0.981277 ACCACCCCCTTCGACATAGG 60.981 60.000 0.00 0.00 0.00 2.57
1886 1889 0.178068 CACCACCCCCTTCGACATAG 59.822 60.000 0.00 0.00 0.00 2.23
1887 1890 1.268992 CCACCACCCCCTTCGACATA 61.269 60.000 0.00 0.00 0.00 2.29
1888 1891 2.602676 CCACCACCCCCTTCGACAT 61.603 63.158 0.00 0.00 0.00 3.06
1889 1892 3.246112 CCACCACCCCCTTCGACA 61.246 66.667 0.00 0.00 0.00 4.35
1890 1893 2.253403 GATCCACCACCCCCTTCGAC 62.253 65.000 0.00 0.00 0.00 4.20
1891 1894 1.993391 GATCCACCACCCCCTTCGA 60.993 63.158 0.00 0.00 0.00 3.71
1892 1895 2.590092 GATCCACCACCCCCTTCG 59.410 66.667 0.00 0.00 0.00 3.79
1893 1896 2.590092 CGATCCACCACCCCCTTC 59.410 66.667 0.00 0.00 0.00 3.46
1894 1897 3.015145 CCGATCCACCACCCCCTT 61.015 66.667 0.00 0.00 0.00 3.95
1905 1908 3.857038 TAACCTGCGGGCCGATCC 61.857 66.667 33.44 13.24 35.63 3.36
1906 1909 2.588034 GTAACCTGCGGGCCGATC 60.588 66.667 33.44 14.10 35.63 3.69
1907 1910 4.524318 CGTAACCTGCGGGCCGAT 62.524 66.667 33.44 11.90 35.63 4.18
1916 1919 0.464373 ATGGATGGCAGCGTAACCTG 60.464 55.000 0.00 0.00 35.93 4.00
1917 1920 0.464373 CATGGATGGCAGCGTAACCT 60.464 55.000 0.00 0.00 0.00 3.50
1918 1921 0.748005 ACATGGATGGCAGCGTAACC 60.748 55.000 0.00 0.00 0.00 2.85
1919 1922 1.094785 AACATGGATGGCAGCGTAAC 58.905 50.000 0.00 0.00 0.00 2.50
1920 1923 1.093972 CAACATGGATGGCAGCGTAA 58.906 50.000 0.00 0.00 0.00 3.18
1921 1924 0.747644 CCAACATGGATGGCAGCGTA 60.748 55.000 6.84 0.00 40.96 4.42
1922 1925 2.048023 CCAACATGGATGGCAGCGT 61.048 57.895 6.84 0.00 40.96 5.07
1923 1926 2.777972 CCCAACATGGATGGCAGCG 61.778 63.158 12.96 0.00 40.96 5.18
1924 1927 0.971959 TTCCCAACATGGATGGCAGC 60.972 55.000 12.96 0.00 40.96 5.25
1925 1928 1.559368 TTTCCCAACATGGATGGCAG 58.441 50.000 12.96 2.90 40.96 4.85
1926 1929 2.021262 TTTTCCCAACATGGATGGCA 57.979 45.000 12.96 0.00 40.96 4.92
1943 1946 0.769247 AGGTGGCTACGGAGGTTTTT 59.231 50.000 0.00 0.00 0.00 1.94
1944 1947 0.036306 CAGGTGGCTACGGAGGTTTT 59.964 55.000 0.00 0.00 0.00 2.43
1945 1948 1.677552 CAGGTGGCTACGGAGGTTT 59.322 57.895 0.00 0.00 0.00 3.27
1946 1949 2.955881 GCAGGTGGCTACGGAGGTT 61.956 63.158 0.00 0.00 40.25 3.50
1947 1950 3.391382 GCAGGTGGCTACGGAGGT 61.391 66.667 0.00 0.00 40.25 3.85
1956 1959 1.825622 GCCTATTGGAGCAGGTGGC 60.826 63.158 0.00 0.00 45.30 5.01
1957 1960 1.152881 GGCCTATTGGAGCAGGTGG 60.153 63.158 0.00 0.00 34.18 4.61
1958 1961 1.071385 CTAGGCCTATTGGAGCAGGTG 59.929 57.143 14.30 0.00 34.18 4.00
1959 1962 1.344496 ACTAGGCCTATTGGAGCAGGT 60.344 52.381 14.30 0.88 34.18 4.00
1960 1963 1.428869 ACTAGGCCTATTGGAGCAGG 58.571 55.000 14.30 0.16 34.57 4.85
1961 1964 4.284490 TGATAACTAGGCCTATTGGAGCAG 59.716 45.833 14.30 2.74 34.57 4.24
1962 1965 4.231273 TGATAACTAGGCCTATTGGAGCA 58.769 43.478 14.30 6.06 34.57 4.26
1963 1966 4.284746 ACTGATAACTAGGCCTATTGGAGC 59.715 45.833 14.30 3.34 34.57 4.70
1964 1967 6.493802 TGTACTGATAACTAGGCCTATTGGAG 59.506 42.308 14.30 5.28 34.57 3.86
1965 1968 6.378745 TGTACTGATAACTAGGCCTATTGGA 58.621 40.000 14.30 0.00 34.57 3.53
1966 1969 6.665992 TGTACTGATAACTAGGCCTATTGG 57.334 41.667 14.30 4.24 0.00 3.16
1967 1970 8.803235 TGTATGTACTGATAACTAGGCCTATTG 58.197 37.037 14.30 5.07 0.00 1.90
1968 1971 8.951614 TGTATGTACTGATAACTAGGCCTATT 57.048 34.615 14.30 4.50 0.00 1.73
1969 1972 8.951614 TTGTATGTACTGATAACTAGGCCTAT 57.048 34.615 14.30 1.31 0.00 2.57
1970 1973 8.771521 TTTGTATGTACTGATAACTAGGCCTA 57.228 34.615 13.09 13.09 0.00 3.93
1971 1974 7.670605 TTTGTATGTACTGATAACTAGGCCT 57.329 36.000 11.78 11.78 0.00 5.19
1972 1975 8.148351 TGATTTGTATGTACTGATAACTAGGCC 58.852 37.037 0.00 0.00 0.00 5.19
1973 1976 8.979574 GTGATTTGTATGTACTGATAACTAGGC 58.020 37.037 0.00 0.00 0.00 3.93
1977 1980 9.809096 CTCAGTGATTTGTATGTACTGATAACT 57.191 33.333 0.00 0.00 44.54 2.24
1978 1981 9.587772 ACTCAGTGATTTGTATGTACTGATAAC 57.412 33.333 0.00 0.00 44.54 1.89
1979 1982 9.586435 CACTCAGTGATTTGTATGTACTGATAA 57.414 33.333 0.00 0.00 44.54 1.75
1980 1983 8.749354 ACACTCAGTGATTTGTATGTACTGATA 58.251 33.333 13.14 0.00 44.54 2.15
1981 1984 7.615403 ACACTCAGTGATTTGTATGTACTGAT 58.385 34.615 13.14 0.00 44.54 2.90
1982 1985 6.993079 ACACTCAGTGATTTGTATGTACTGA 58.007 36.000 13.14 0.00 43.74 3.41
1983 1986 6.311445 GGACACTCAGTGATTTGTATGTACTG 59.689 42.308 13.14 0.00 39.95 2.74
1984 1987 6.014584 TGGACACTCAGTGATTTGTATGTACT 60.015 38.462 13.14 0.00 36.96 2.73
1985 1988 6.090898 GTGGACACTCAGTGATTTGTATGTAC 59.909 42.308 13.14 1.72 36.96 2.90
1986 1989 6.163476 GTGGACACTCAGTGATTTGTATGTA 58.837 40.000 13.14 0.00 36.96 2.29
1987 1990 4.997395 GTGGACACTCAGTGATTTGTATGT 59.003 41.667 13.14 0.21 36.96 2.29
1988 1991 4.996758 TGTGGACACTCAGTGATTTGTATG 59.003 41.667 13.14 0.00 36.96 2.39
1989 1992 5.227569 TGTGGACACTCAGTGATTTGTAT 57.772 39.130 13.14 0.00 36.96 2.29
1994 1997 4.630644 ATCTTGTGGACACTCAGTGATT 57.369 40.909 13.14 0.00 36.96 2.57
2000 2003 2.899900 AGCACTATCTTGTGGACACTCA 59.100 45.455 3.91 0.00 38.31 3.41
2016 2019 3.437049 GCCTCGATTAGTTTTTGAGCACT 59.563 43.478 0.00 0.00 0.00 4.40
2032 2035 3.491619 GCAATCTCTATCTTGTGCCTCGA 60.492 47.826 0.00 0.00 0.00 4.04
2045 2048 1.355563 CGCCTCGTCGCAATCTCTA 59.644 57.895 0.00 0.00 0.00 2.43
2076 2079 3.305335 CGCCTGGCACTATTCAACTTTTT 60.305 43.478 20.29 0.00 0.00 1.94
2097 2100 3.203716 GCCCTTAAAACCATAGACCTCG 58.796 50.000 0.00 0.00 0.00 4.63
2137 2140 5.422214 TCTCTTCTTCTTCCCATACAACC 57.578 43.478 0.00 0.00 0.00 3.77
2139 2142 4.471386 CCCTCTCTTCTTCTTCCCATACAA 59.529 45.833 0.00 0.00 0.00 2.41
2144 2147 1.152271 ACCCCTCTCTTCTTCTTCCCA 59.848 52.381 0.00 0.00 0.00 4.37
2158 2161 0.992695 ACTTCAAGCCCTAACCCCTC 59.007 55.000 0.00 0.00 0.00 4.30
2214 2253 3.069443 GCTCACAAGTTTTTCCCCATGAA 59.931 43.478 0.00 0.00 0.00 2.57
2232 2271 5.509501 CCTTGATACTTTTTGGCTTTGCTCA 60.510 40.000 0.00 0.00 0.00 4.26
2241 2280 4.278170 TGCACTGACCTTGATACTTTTTGG 59.722 41.667 0.00 0.00 0.00 3.28
2298 2345 3.950087 TGCATGCAACGATCTTGATAC 57.050 42.857 20.30 0.00 0.00 2.24
2299 2346 5.759763 AGTTATGCATGCAACGATCTTGATA 59.240 36.000 26.68 5.28 0.00 2.15
2300 2347 4.577693 AGTTATGCATGCAACGATCTTGAT 59.422 37.500 26.68 6.39 0.00 2.57
2301 2348 3.940852 AGTTATGCATGCAACGATCTTGA 59.059 39.130 26.68 0.00 0.00 3.02
2302 2349 4.033019 CAGTTATGCATGCAACGATCTTG 58.967 43.478 26.68 12.66 0.00 3.02
2303 2350 3.065786 CCAGTTATGCATGCAACGATCTT 59.934 43.478 26.68 8.86 0.00 2.40
2304 2351 2.615447 CCAGTTATGCATGCAACGATCT 59.385 45.455 26.68 15.20 0.00 2.75
2305 2352 2.287188 CCCAGTTATGCATGCAACGATC 60.287 50.000 26.68 13.22 0.00 3.69
2306 2353 1.677576 CCCAGTTATGCATGCAACGAT 59.322 47.619 26.68 10.93 0.00 3.73
2307 2354 1.093972 CCCAGTTATGCATGCAACGA 58.906 50.000 26.68 10.47 0.00 3.85
2308 2355 0.526096 GCCCAGTTATGCATGCAACG 60.526 55.000 26.68 14.44 0.00 4.10
2309 2356 0.819582 AGCCCAGTTATGCATGCAAC 59.180 50.000 26.68 19.35 0.00 4.17
2310 2357 2.433662 TAGCCCAGTTATGCATGCAA 57.566 45.000 26.68 11.45 0.00 4.08
2311 2358 2.662535 ATAGCCCAGTTATGCATGCA 57.337 45.000 25.04 25.04 0.00 3.96
2312 2359 5.824624 ACATATATAGCCCAGTTATGCATGC 59.175 40.000 11.82 11.82 0.00 4.06
2313 2360 7.772292 AGAACATATATAGCCCAGTTATGCATG 59.228 37.037 10.16 0.00 0.00 4.06
2314 2361 7.772292 CAGAACATATATAGCCCAGTTATGCAT 59.228 37.037 3.79 3.79 0.00 3.96
2315 2362 7.105588 CAGAACATATATAGCCCAGTTATGCA 58.894 38.462 0.00 0.00 0.00 3.96
2316 2363 6.540189 CCAGAACATATATAGCCCAGTTATGC 59.460 42.308 0.00 0.00 29.65 3.14
2317 2364 7.050377 CCCAGAACATATATAGCCCAGTTATG 58.950 42.308 0.00 0.00 0.00 1.90
2318 2365 6.158695 CCCCAGAACATATATAGCCCAGTTAT 59.841 42.308 0.00 0.00 0.00 1.89
2319 2366 5.487488 CCCCAGAACATATATAGCCCAGTTA 59.513 44.000 0.00 0.00 0.00 2.24
2320 2367 4.289672 CCCCAGAACATATATAGCCCAGTT 59.710 45.833 0.00 0.00 0.00 3.16
2321 2368 3.846588 CCCCAGAACATATATAGCCCAGT 59.153 47.826 0.00 0.00 0.00 4.00
2322 2369 3.370953 GCCCCAGAACATATATAGCCCAG 60.371 52.174 0.00 0.00 0.00 4.45
2323 2370 2.576191 GCCCCAGAACATATATAGCCCA 59.424 50.000 0.00 0.00 0.00 5.36
2324 2371 2.846827 AGCCCCAGAACATATATAGCCC 59.153 50.000 0.00 0.00 0.00 5.19
2325 2372 3.370953 CCAGCCCCAGAACATATATAGCC 60.371 52.174 0.00 0.00 0.00 3.93
2326 2373 3.370953 CCCAGCCCCAGAACATATATAGC 60.371 52.174 0.00 0.00 0.00 2.97
2327 2374 4.104086 TCCCAGCCCCAGAACATATATAG 58.896 47.826 0.00 0.00 0.00 1.31
2328 2375 4.154802 TCCCAGCCCCAGAACATATATA 57.845 45.455 0.00 0.00 0.00 0.86
2329 2376 3.004126 TCCCAGCCCCAGAACATATAT 57.996 47.619 0.00 0.00 0.00 0.86
2330 2377 2.505672 TCCCAGCCCCAGAACATATA 57.494 50.000 0.00 0.00 0.00 0.86
2331 2378 1.707427 GATCCCAGCCCCAGAACATAT 59.293 52.381 0.00 0.00 0.00 1.78
2332 2379 1.140312 GATCCCAGCCCCAGAACATA 58.860 55.000 0.00 0.00 0.00 2.29
2333 2380 0.920763 TGATCCCAGCCCCAGAACAT 60.921 55.000 0.00 0.00 0.00 2.71
2334 2381 1.139498 TTGATCCCAGCCCCAGAACA 61.139 55.000 0.00 0.00 0.00 3.18
2335 2382 0.259938 ATTGATCCCAGCCCCAGAAC 59.740 55.000 0.00 0.00 0.00 3.01
2336 2383 1.009997 AATTGATCCCAGCCCCAGAA 58.990 50.000 0.00 0.00 0.00 3.02
2337 2384 0.259647 CAATTGATCCCAGCCCCAGA 59.740 55.000 0.00 0.00 0.00 3.86
2338 2385 0.757935 CCAATTGATCCCAGCCCCAG 60.758 60.000 7.12 0.00 0.00 4.45
2339 2386 1.310715 CCAATTGATCCCAGCCCCA 59.689 57.895 7.12 0.00 0.00 4.96
2340 2387 0.555769 TACCAATTGATCCCAGCCCC 59.444 55.000 7.12 0.00 0.00 5.80
2341 2388 1.479389 CCTACCAATTGATCCCAGCCC 60.479 57.143 7.12 0.00 0.00 5.19
2342 2389 1.986882 CCTACCAATTGATCCCAGCC 58.013 55.000 7.12 0.00 0.00 4.85
2343 2390 1.322442 GCCTACCAATTGATCCCAGC 58.678 55.000 7.12 0.00 0.00 4.85
2344 2391 2.734755 TGCCTACCAATTGATCCCAG 57.265 50.000 7.12 0.00 0.00 4.45
2345 2392 3.686227 AATGCCTACCAATTGATCCCA 57.314 42.857 7.12 0.00 0.00 4.37
2346 2393 4.729868 AGTAATGCCTACCAATTGATCCC 58.270 43.478 7.12 0.00 0.00 3.85
2347 2394 6.534634 AGTAGTAATGCCTACCAATTGATCC 58.465 40.000 7.12 0.00 38.46 3.36
2348 2395 9.209175 CTTAGTAGTAATGCCTACCAATTGATC 57.791 37.037 7.12 0.00 38.46 2.92
2349 2396 8.714906 ACTTAGTAGTAATGCCTACCAATTGAT 58.285 33.333 7.12 0.00 38.46 2.57
2350 2397 8.086143 ACTTAGTAGTAATGCCTACCAATTGA 57.914 34.615 7.12 0.00 38.46 2.57
2351 2398 8.612619 CAACTTAGTAGTAATGCCTACCAATTG 58.387 37.037 0.00 0.00 38.46 2.32
2352 2399 7.282450 GCAACTTAGTAGTAATGCCTACCAATT 59.718 37.037 5.04 0.00 38.46 2.32
2353 2400 6.766467 GCAACTTAGTAGTAATGCCTACCAAT 59.234 38.462 5.04 0.00 38.46 3.16
2354 2401 6.110707 GCAACTTAGTAGTAATGCCTACCAA 58.889 40.000 5.04 0.00 38.46 3.67
2355 2402 5.667466 GCAACTTAGTAGTAATGCCTACCA 58.333 41.667 5.04 0.00 38.46 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.