Multiple sequence alignment - TraesCS3B01G000600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G000600 chr3B 100.000 4997 0 0 1 4997 662279 667275 0.000000e+00 9228.0
1 TraesCS3B01G000600 chr3B 79.839 124 25 0 2101 2224 779530967 779530844 1.920000e-14 91.6
2 TraesCS3B01G000600 chr3D 91.321 3860 188 60 928 4701 3825764 3821966 0.000000e+00 5136.0
3 TraesCS3B01G000600 chr3D 80.144 831 70 43 111 904 3826595 3825823 2.650000e-147 532.0
4 TraesCS3B01G000600 chr3D 84.706 255 15 12 4756 4987 3821943 3821690 3.010000e-57 233.0
5 TraesCS3B01G000600 chr3D 81.818 110 20 0 2101 2210 582053474 582053583 5.330000e-15 93.5
6 TraesCS3B01G000600 chrUn 90.896 2131 119 32 2886 4987 31932307 31934391 0.000000e+00 2791.0
7 TraesCS3B01G000600 chrUn 94.095 1304 51 14 939 2236 31930413 31931696 0.000000e+00 1958.0
8 TraesCS3B01G000600 chrUn 91.077 594 28 12 2270 2838 31931701 31932294 0.000000e+00 780.0
9 TraesCS3B01G000600 chrUn 85.498 331 12 13 588 918 31930062 31930356 3.760000e-81 313.0
10 TraesCS3B01G000600 chrUn 90.278 216 11 6 296 503 31929817 31930030 1.770000e-69 274.0
11 TraesCS3B01G000600 chr1D 81.902 326 59 0 3166 3491 424730683 424731008 4.930000e-70 276.0
12 TraesCS3B01G000600 chr1A 81.090 312 59 0 3166 3477 520573079 520573390 2.990000e-62 250.0
13 TraesCS3B01G000600 chr1A 97.500 40 1 0 2417 2456 29010212 29010251 8.980000e-08 69.4
14 TraesCS3B01G000600 chr7A 97.436 39 1 0 2418 2456 206586100 206586138 3.230000e-07 67.6
15 TraesCS3B01G000600 chr7A 97.436 39 1 0 2418 2456 439794713 439794675 3.230000e-07 67.6
16 TraesCS3B01G000600 chr4A 97.436 39 1 0 2418 2456 319828043 319828005 3.230000e-07 67.6
17 TraesCS3B01G000600 chr3A 97.436 39 1 0 2418 2456 25379231 25379193 3.230000e-07 67.6
18 TraesCS3B01G000600 chr1B 97.436 39 1 0 2418 2456 595180798 595180836 3.230000e-07 67.6
19 TraesCS3B01G000600 chr6D 91.489 47 2 2 2410 2456 72021723 72021767 4.180000e-06 63.9
20 TraesCS3B01G000600 chr6A 91.489 47 3 1 2410 2456 88767581 88767626 4.180000e-06 63.9
21 TraesCS3B01G000600 chr6B 93.023 43 1 2 2837 2878 497372269 497372228 1.500000e-05 62.1
22 TraesCS3B01G000600 chr2B 89.796 49 3 1 2410 2456 655839671 655839623 1.500000e-05 62.1
23 TraesCS3B01G000600 chr5A 100.000 29 0 0 1868 1896 130083209 130083237 3.000000e-03 54.7
24 TraesCS3B01G000600 chr2A 100.000 29 0 0 1868 1896 203254785 203254813 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G000600 chr3B 662279 667275 4996 False 9228.0 9228 100.000000 1 4997 1 chr3B.!!$F1 4996
1 TraesCS3B01G000600 chr3D 3821690 3826595 4905 True 1967.0 5136 85.390333 111 4987 3 chr3D.!!$R1 4876
2 TraesCS3B01G000600 chrUn 31929817 31934391 4574 False 1223.2 2791 90.368800 296 4987 5 chrUn.!!$F1 4691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 605 0.040204 CAAGGCATCCAACCTCCCTT 59.960 55.0 0.0 0.0 36.14 3.95 F
1752 1883 0.041839 GCAGCAAATACGCCGATGAG 60.042 55.0 0.0 0.0 0.00 2.90 F
2055 2192 0.173708 GCGGAGGTGACTAAGTGGAG 59.826 60.0 0.0 0.0 44.43 3.86 F
3365 3599 0.038310 CACCCAAGTCCTTCCCCTTC 59.962 60.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2192 0.107459 GATGTTCACTCCCCTCTGGC 60.107 60.0 0.00 0.0 0.00 4.85 R
3162 3396 0.111253 AGGTTGGCCTTCTTCCACAG 59.889 55.0 3.32 0.0 44.18 3.66 R
3882 4116 0.464373 ATGCATGGCAAGTAGGGTCG 60.464 55.0 0.00 0.0 43.62 4.79 R
4602 4842 0.179045 CTTGGGCTTCCCTATGTCGG 60.179 60.0 3.27 0.0 45.70 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.051027 GTAAAATGTGATGAAATGTTGTACTCG 57.949 33.333 0.00 0.00 0.00 4.18
77 78 6.801539 AATGTGATGAAATGTTGTACTCGT 57.198 33.333 0.00 0.00 0.00 4.18
78 79 7.899178 AATGTGATGAAATGTTGTACTCGTA 57.101 32.000 0.00 0.00 0.00 3.43
79 80 6.699895 TGTGATGAAATGTTGTACTCGTAC 57.300 37.500 0.35 0.35 36.63 3.67
80 81 6.217294 TGTGATGAAATGTTGTACTCGTACA 58.783 36.000 5.84 5.84 43.61 2.90
93 94 7.614124 TGTACTCGTACAAAAAGTTTTTCCT 57.386 32.000 10.66 2.35 42.49 3.36
94 95 8.715191 TGTACTCGTACAAAAAGTTTTTCCTA 57.285 30.769 10.66 1.45 42.49 2.94
95 96 9.328845 TGTACTCGTACAAAAAGTTTTTCCTAT 57.671 29.630 10.66 0.70 42.49 2.57
98 99 9.328845 ACTCGTACAAAAAGTTTTTCCTATACA 57.671 29.630 10.66 3.45 0.00 2.29
99 100 9.807386 CTCGTACAAAAAGTTTTTCCTATACAG 57.193 33.333 10.66 0.59 0.00 2.74
100 101 9.545105 TCGTACAAAAAGTTTTTCCTATACAGA 57.455 29.630 10.66 9.60 0.00 3.41
109 110 8.850007 AGTTTTTCCTATACAGAAACTCTTCC 57.150 34.615 0.00 0.00 36.17 3.46
110 111 8.437575 AGTTTTTCCTATACAGAAACTCTTCCA 58.562 33.333 0.00 0.00 36.17 3.53
111 112 8.722394 GTTTTTCCTATACAGAAACTCTTCCAG 58.278 37.037 0.00 0.00 33.11 3.86
112 113 7.792364 TTTCCTATACAGAAACTCTTCCAGA 57.208 36.000 0.00 0.00 31.28 3.86
113 114 7.792364 TTCCTATACAGAAACTCTTCCAGAA 57.208 36.000 0.00 0.00 31.28 3.02
114 115 7.792364 TCCTATACAGAAACTCTTCCAGAAA 57.208 36.000 0.00 0.00 31.28 2.52
115 116 8.202461 TCCTATACAGAAACTCTTCCAGAAAA 57.798 34.615 0.00 0.00 31.28 2.29
149 154 8.511604 TCTTTTAGAATCAAATAGCTCCAAGG 57.488 34.615 0.00 0.00 0.00 3.61
162 167 8.870075 AATAGCTCCAAGGATACCATTAAATC 57.130 34.615 0.00 0.00 37.17 2.17
285 307 3.578716 TGCATATAGCTAGGAGGTTCACC 59.421 47.826 0.00 0.00 45.94 4.02
415 443 1.374758 GAGTCCGGAGCTTGTGGTG 60.375 63.158 3.06 0.00 0.00 4.17
426 454 0.886043 CTTGTGGTGCAGCAGTAGCA 60.886 55.000 20.85 10.98 45.49 3.49
427 455 0.886043 TTGTGGTGCAGCAGTAGCAG 60.886 55.000 20.85 0.00 43.63 4.24
428 456 1.004560 GTGGTGCAGCAGTAGCAGA 60.005 57.895 20.85 0.00 43.63 4.26
429 457 0.603707 GTGGTGCAGCAGTAGCAGAA 60.604 55.000 20.85 0.00 43.63 3.02
431 459 2.166270 GTGCAGCAGTAGCAGAACC 58.834 57.895 0.00 0.00 43.63 3.62
462 490 4.700692 TGGTTACACTCTGCTCAGTACTAG 59.299 45.833 0.00 0.00 0.00 2.57
479 507 3.827722 ACTAGAGCTCCACTGTATCTCC 58.172 50.000 10.93 0.00 0.00 3.71
547 584 2.627515 ACTCAAGTGAGCTGAAGCAA 57.372 45.000 8.25 0.00 45.79 3.91
548 585 2.492012 ACTCAAGTGAGCTGAAGCAAG 58.508 47.619 8.25 0.00 45.79 4.01
549 586 1.197264 CTCAAGTGAGCTGAAGCAAGC 59.803 52.381 4.90 0.00 45.16 4.01
550 587 0.949397 CAAGTGAGCTGAAGCAAGCA 59.051 50.000 4.90 0.00 46.08 3.91
551 588 1.335810 CAAGTGAGCTGAAGCAAGCAA 59.664 47.619 4.90 0.00 46.08 3.91
552 589 1.236628 AGTGAGCTGAAGCAAGCAAG 58.763 50.000 4.90 0.00 46.08 4.01
553 590 0.240411 GTGAGCTGAAGCAAGCAAGG 59.760 55.000 4.90 0.00 46.08 3.61
554 591 1.212229 GAGCTGAAGCAAGCAAGGC 59.788 57.895 4.90 0.00 46.08 4.35
555 592 1.521450 GAGCTGAAGCAAGCAAGGCA 61.521 55.000 4.90 0.00 46.08 4.75
556 593 0.898789 AGCTGAAGCAAGCAAGGCAT 60.899 50.000 4.90 0.00 46.08 4.40
557 594 0.458025 GCTGAAGCAAGCAAGGCATC 60.458 55.000 0.00 0.00 43.01 3.91
558 595 0.172803 CTGAAGCAAGCAAGGCATCC 59.827 55.000 0.00 0.00 0.00 3.51
559 596 0.540133 TGAAGCAAGCAAGGCATCCA 60.540 50.000 0.00 0.00 0.00 3.41
560 597 0.604578 GAAGCAAGCAAGGCATCCAA 59.395 50.000 0.00 0.00 0.00 3.53
561 598 0.319405 AAGCAAGCAAGGCATCCAAC 59.681 50.000 0.00 0.00 0.00 3.77
562 599 1.079612 GCAAGCAAGGCATCCAACC 60.080 57.895 0.00 0.00 0.00 3.77
563 600 1.538687 GCAAGCAAGGCATCCAACCT 61.539 55.000 0.00 0.00 40.02 3.50
564 601 0.529378 CAAGCAAGGCATCCAACCTC 59.471 55.000 0.00 0.00 36.14 3.85
565 602 0.613012 AAGCAAGGCATCCAACCTCC 60.613 55.000 0.00 0.00 36.14 4.30
566 603 2.054453 GCAAGGCATCCAACCTCCC 61.054 63.158 0.00 0.00 36.14 4.30
567 604 1.693640 CAAGGCATCCAACCTCCCT 59.306 57.895 0.00 0.00 36.14 4.20
568 605 0.040204 CAAGGCATCCAACCTCCCTT 59.960 55.000 0.00 0.00 36.14 3.95
569 606 1.284785 CAAGGCATCCAACCTCCCTTA 59.715 52.381 0.00 0.00 36.14 2.69
570 607 0.919710 AGGCATCCAACCTCCCTTAC 59.080 55.000 0.00 0.00 28.76 2.34
571 608 0.106669 GGCATCCAACCTCCCTTACC 60.107 60.000 0.00 0.00 0.00 2.85
572 609 0.919710 GCATCCAACCTCCCTTACCT 59.080 55.000 0.00 0.00 0.00 3.08
573 610 1.285078 GCATCCAACCTCCCTTACCTT 59.715 52.381 0.00 0.00 0.00 3.50
629 689 3.551485 GTGCACAGTTTGTTTGTTCATCC 59.449 43.478 13.17 0.00 0.00 3.51
632 692 4.445385 GCACAGTTTGTTTGTTCATCCATC 59.555 41.667 0.00 0.00 0.00 3.51
633 693 4.676471 CACAGTTTGTTTGTTCATCCATCG 59.324 41.667 0.00 0.00 0.00 3.84
634 694 4.578516 ACAGTTTGTTTGTTCATCCATCGA 59.421 37.500 0.00 0.00 0.00 3.59
636 696 6.429692 ACAGTTTGTTTGTTCATCCATCGATA 59.570 34.615 0.00 0.00 0.00 2.92
637 697 7.121168 ACAGTTTGTTTGTTCATCCATCGATAT 59.879 33.333 0.00 0.00 0.00 1.63
639 699 9.173021 AGTTTGTTTGTTCATCCATCGATATAA 57.827 29.630 0.00 0.00 0.00 0.98
640 700 9.221775 GTTTGTTTGTTCATCCATCGATATAAC 57.778 33.333 0.00 0.00 0.00 1.89
641 701 7.490962 TGTTTGTTCATCCATCGATATAACC 57.509 36.000 0.00 0.00 0.00 2.85
642 702 7.279615 TGTTTGTTCATCCATCGATATAACCT 58.720 34.615 0.00 0.00 0.00 3.50
643 703 7.441157 TGTTTGTTCATCCATCGATATAACCTC 59.559 37.037 0.00 0.00 0.00 3.85
644 704 6.918067 TGTTCATCCATCGATATAACCTCT 57.082 37.500 0.00 0.00 0.00 3.69
645 705 6.691508 TGTTCATCCATCGATATAACCTCTG 58.308 40.000 0.00 0.00 0.00 3.35
646 706 5.330455 TCATCCATCGATATAACCTCTGC 57.670 43.478 0.00 0.00 0.00 4.26
647 707 4.772100 TCATCCATCGATATAACCTCTGCA 59.228 41.667 0.00 0.00 0.00 4.41
648 708 5.423290 TCATCCATCGATATAACCTCTGCAT 59.577 40.000 0.00 0.00 0.00 3.96
744 804 4.270325 GGCGAGTAACAAGTGTATCATTCC 59.730 45.833 0.00 0.00 0.00 3.01
745 805 4.026804 GCGAGTAACAAGTGTATCATTCCG 60.027 45.833 0.00 0.00 0.00 4.30
746 806 5.337554 CGAGTAACAAGTGTATCATTCCGA 58.662 41.667 0.00 0.00 0.00 4.55
747 807 5.977725 CGAGTAACAAGTGTATCATTCCGAT 59.022 40.000 0.00 0.00 38.21 4.18
813 883 4.760047 CCAAGACGGAGGCGGTGG 62.760 72.222 0.00 0.00 36.56 4.61
814 884 4.760047 CAAGACGGAGGCGGTGGG 62.760 72.222 0.00 0.00 0.00 4.61
826 896 3.979497 GGTGGGGTGGGGTGAAGG 61.979 72.222 0.00 0.00 0.00 3.46
827 897 4.678743 GTGGGGTGGGGTGAAGGC 62.679 72.222 0.00 0.00 0.00 4.35
830 900 3.909651 GGGTGGGGTGAAGGCCAA 61.910 66.667 5.01 0.00 0.00 4.52
831 901 2.283173 GGTGGGGTGAAGGCCAAG 60.283 66.667 5.01 0.00 0.00 3.61
832 902 2.991540 GTGGGGTGAAGGCCAAGC 60.992 66.667 5.01 0.00 0.00 4.01
833 903 3.506743 TGGGGTGAAGGCCAAGCA 61.507 61.111 5.01 0.00 0.00 3.91
920 993 3.437795 CTGGGCTGCGCTTCCAAG 61.438 66.667 17.81 8.80 0.00 3.61
921 994 3.907260 CTGGGCTGCGCTTCCAAGA 62.907 63.158 17.81 1.80 0.00 3.02
922 995 2.439156 GGGCTGCGCTTCCAAGAT 60.439 61.111 9.73 0.00 0.00 2.40
924 997 1.451028 GGCTGCGCTTCCAAGATCT 60.451 57.895 9.73 0.00 0.00 2.75
926 999 0.098376 GCTGCGCTTCCAAGATCTTG 59.902 55.000 25.75 25.75 40.13 3.02
940 1049 4.057406 AGATCTTGGAGCTGAAATCTCG 57.943 45.455 0.00 0.00 0.00 4.04
978 1088 3.190874 AGCTACGCTTTATTCACTGAGC 58.809 45.455 0.00 0.00 33.89 4.26
979 1089 3.118956 AGCTACGCTTTATTCACTGAGCT 60.119 43.478 0.00 0.00 33.89 4.09
980 1090 4.098044 AGCTACGCTTTATTCACTGAGCTA 59.902 41.667 0.00 0.00 33.89 3.32
981 1091 4.442733 GCTACGCTTTATTCACTGAGCTAG 59.557 45.833 0.00 0.00 33.09 3.42
1485 1595 2.046892 CACCTGCCGGAGAACCTG 60.047 66.667 5.05 0.00 0.00 4.00
1542 1673 2.750657 GGAGATCCAGGGGTGGCTG 61.751 68.421 0.00 0.00 35.64 4.85
1656 1787 1.815421 GCAGTCCATCGACCGCATT 60.815 57.895 0.00 0.00 41.31 3.56
1659 1790 0.179100 AGTCCATCGACCGCATTCTG 60.179 55.000 0.00 0.00 40.12 3.02
1668 1799 1.748122 CCGCATTCTGCTCTGCCTT 60.748 57.895 0.00 0.00 42.25 4.35
1704 1835 2.436646 CTCCGCGGCATCAAACCT 60.437 61.111 23.51 0.00 0.00 3.50
1752 1883 0.041839 GCAGCAAATACGCCGATGAG 60.042 55.000 0.00 0.00 0.00 2.90
1776 1907 2.556459 CCTCGAGGACGGCGATGAT 61.556 63.158 28.21 0.00 40.21 2.45
1800 1931 1.153168 CGCCTACTTCCCCATGGTG 60.153 63.158 11.73 0.00 0.00 4.17
1806 1937 0.253160 ACTTCCCCATGGTGCTCCTA 60.253 55.000 11.73 0.00 34.23 2.94
1836 1967 4.315803 CCATGTGTAACGAGAAAGAGGTT 58.684 43.478 0.00 0.00 42.39 3.50
1841 1972 2.150397 AACGAGAAAGAGGTTCGTGG 57.850 50.000 0.00 0.00 45.77 4.94
1842 1973 1.038280 ACGAGAAAGAGGTTCGTGGT 58.962 50.000 0.00 0.00 44.90 4.16
1843 1974 2.233271 ACGAGAAAGAGGTTCGTGGTA 58.767 47.619 0.00 0.00 44.90 3.25
1844 1975 2.228343 ACGAGAAAGAGGTTCGTGGTAG 59.772 50.000 0.00 0.00 44.90 3.18
1845 1976 2.228343 CGAGAAAGAGGTTCGTGGTAGT 59.772 50.000 0.00 0.00 41.52 2.73
1847 1978 4.629092 GAGAAAGAGGTTCGTGGTAGTTT 58.371 43.478 0.00 0.00 41.52 2.66
1848 1979 4.629092 AGAAAGAGGTTCGTGGTAGTTTC 58.371 43.478 0.00 0.00 41.52 2.78
1849 1980 4.344390 AGAAAGAGGTTCGTGGTAGTTTCT 59.656 41.667 0.00 0.00 41.52 2.52
1850 1981 3.938289 AGAGGTTCGTGGTAGTTTCTC 57.062 47.619 0.00 0.00 0.00 2.87
1851 1982 2.561858 AGAGGTTCGTGGTAGTTTCTCC 59.438 50.000 0.00 0.00 0.00 3.71
1852 1983 2.298163 GAGGTTCGTGGTAGTTTCTCCA 59.702 50.000 0.00 0.00 0.00 3.86
1861 1992 5.755409 TGGTAGTTTCTCCACATGTACAT 57.245 39.130 1.41 1.41 0.00 2.29
1881 2012 4.643334 ACATCATGCATGCTTTGTATCTGT 59.357 37.500 22.25 14.35 35.65 3.41
1920 2056 8.771920 TCTCATACATTTTAATGAACTGACGT 57.228 30.769 9.32 0.00 39.67 4.34
1921 2057 8.655970 TCTCATACATTTTAATGAACTGACGTG 58.344 33.333 9.32 0.00 39.67 4.49
1922 2058 8.317891 TCATACATTTTAATGAACTGACGTGT 57.682 30.769 9.32 0.00 39.67 4.49
1987 2124 2.969238 CGGGATCGCATGCTGGTC 60.969 66.667 17.13 14.40 0.00 4.02
2055 2192 0.173708 GCGGAGGTGACTAAGTGGAG 59.826 60.000 0.00 0.00 44.43 3.86
2200 2337 2.359975 GACTTCCAGCCCAACCCG 60.360 66.667 0.00 0.00 0.00 5.28
2300 2443 4.681483 TCGACTATCGATGCATTGCTTAAG 59.319 41.667 8.54 0.00 44.82 1.85
2315 2458 3.194116 TGCTTAAGGTTAACTCCGTCGAT 59.806 43.478 5.42 0.00 0.00 3.59
2354 2497 5.783360 AGAGATCTACTACCTAGCTAGCTGA 59.217 44.000 27.68 13.23 0.00 4.26
2409 2552 2.435437 TGGATCGATCTCAGATTTGGCA 59.565 45.455 23.96 7.39 0.00 4.92
2410 2553 3.118298 TGGATCGATCTCAGATTTGGCAA 60.118 43.478 23.96 0.00 0.00 4.52
2419 2562 4.943705 TCTCAGATTTGGCAATTGACCTAC 59.056 41.667 9.30 0.00 0.00 3.18
2423 2573 5.066505 CAGATTTGGCAATTGACCTACTACC 59.933 44.000 9.30 0.00 0.00 3.18
2427 2577 4.616553 TGGCAATTGACCTACTACCTCTA 58.383 43.478 9.30 0.00 0.00 2.43
2459 2609 7.925703 ATATAAGACGTTTTAGATCACACGG 57.074 36.000 4.75 0.00 36.95 4.94
2460 2610 3.928727 AGACGTTTTAGATCACACGGA 57.071 42.857 0.00 0.00 36.95 4.69
2461 2611 3.572584 AGACGTTTTAGATCACACGGAC 58.427 45.455 0.00 0.00 36.95 4.79
2462 2612 3.255149 AGACGTTTTAGATCACACGGACT 59.745 43.478 0.00 0.00 36.95 3.85
2463 2613 3.314553 ACGTTTTAGATCACACGGACTG 58.685 45.455 0.00 0.00 36.95 3.51
2466 2616 5.100259 CGTTTTAGATCACACGGACTGTAT 58.900 41.667 0.00 0.00 0.00 2.29
2467 2617 6.127925 ACGTTTTAGATCACACGGACTGTATA 60.128 38.462 0.00 0.00 36.95 1.47
2468 2618 6.916387 CGTTTTAGATCACACGGACTGTATAT 59.084 38.462 0.00 0.00 0.00 0.86
2469 2619 7.113124 CGTTTTAGATCACACGGACTGTATATC 59.887 40.741 0.00 0.00 0.00 1.63
2470 2620 7.818997 TTTAGATCACACGGACTGTATATCT 57.181 36.000 0.00 9.21 37.97 1.98
2471 2621 8.913487 TTTAGATCACACGGACTGTATATCTA 57.087 34.615 0.00 7.80 36.68 1.98
2512 2712 8.902540 ATTCACTTTGAAACTACATGTGTAGA 57.097 30.769 23.07 1.89 43.58 2.59
2513 2713 8.902540 TTCACTTTGAAACTACATGTGTAGAT 57.097 30.769 23.07 11.35 40.70 1.98
2514 2714 9.990360 TTCACTTTGAAACTACATGTGTAGATA 57.010 29.630 23.07 6.72 40.70 1.98
2832 3040 3.926616 ACCTCAACGATGTCAAGGTAAG 58.073 45.455 3.11 0.00 38.56 2.34
2850 3058 6.612741 AGGTAAGTTATACTACTCCCTCTGG 58.387 44.000 0.00 0.00 28.53 3.86
2871 3079 4.142271 TGGCCCAAAATATAAGAGCGTTTG 60.142 41.667 0.00 0.00 0.00 2.93
2878 3086 6.795098 AAATATAAGAGCGTTTGTGACACA 57.205 33.333 3.56 3.56 0.00 3.72
2883 3091 9.929180 ATATAAGAGCGTTTGTGACACATATAT 57.071 29.630 9.55 8.36 0.00 0.86
2884 3092 5.973651 AGAGCGTTTGTGACACATATATG 57.026 39.130 9.55 11.29 0.00 1.78
2908 3116 3.599730 TCGGATGCAATCTAGCTATGG 57.400 47.619 0.00 0.00 44.71 2.74
3107 3341 9.869844 GATTAATTCATAGTCACACTTGCATAC 57.130 33.333 0.00 0.00 0.00 2.39
3115 3349 3.620374 GTCACACTTGCATACAGATCTGG 59.380 47.826 26.08 10.15 34.19 3.86
3140 3374 4.631813 GCTGACTAGGTCCTTGTATGTTTG 59.368 45.833 5.92 0.00 0.00 2.93
3162 3396 0.953727 TAATTGCATGCAGATCCCGC 59.046 50.000 21.50 0.00 0.00 6.13
3347 3581 2.046023 CTCAACATCCTGCCGGCA 60.046 61.111 30.59 30.59 0.00 5.69
3365 3599 0.038310 CACCCAAGTCCTTCCCCTTC 59.962 60.000 0.00 0.00 0.00 3.46
3401 3635 2.254459 CTCTTCGAGAACACCATGTCG 58.746 52.381 0.00 0.00 37.43 4.35
3528 3762 3.147595 CGATGGCCGAGGAGACCA 61.148 66.667 0.00 0.00 41.76 4.02
3653 3887 4.154347 GCCGAGGCAGAGGAGGTG 62.154 72.222 9.58 0.00 41.49 4.00
3728 3962 1.356124 TCTTCAAGAAGGAGCTGGCT 58.644 50.000 9.73 0.00 38.88 4.75
3731 3965 0.901124 TCAAGAAGGAGCTGGCTCTC 59.099 55.000 19.92 11.88 42.38 3.20
3800 4034 1.406205 GGGCTGCACTTCTACTTCCTC 60.406 57.143 0.50 0.00 0.00 3.71
3827 4061 2.342648 GGCGTCACCTTCCTCGTT 59.657 61.111 0.00 0.00 34.51 3.85
3877 4111 1.198637 CAGCTAGTGGCAAGCAGAAAC 59.801 52.381 13.28 0.00 42.62 2.78
3882 4116 1.202452 AGTGGCAAGCAGAAACAAAGC 60.202 47.619 0.00 0.00 0.00 3.51
4099 4333 4.499019 GCTAGCTAGCTAGTTCTCTGTTGG 60.499 50.000 39.05 19.81 45.67 3.77
4148 4382 8.082242 AGCAAGCAGGTTGTTAATTACTTTTAG 58.918 33.333 13.80 0.00 38.55 1.85
4153 4387 7.114388 GCAGGTTGTTAATTACTTTTAGCACAC 59.886 37.037 0.00 0.00 0.00 3.82
4166 4400 0.532573 AGCACACTACTCCATCCGTG 59.467 55.000 0.00 0.00 0.00 4.94
4172 4406 3.254060 CACTACTCCATCCGTGAACAAG 58.746 50.000 0.00 0.00 0.00 3.16
4174 4408 2.169832 ACTCCATCCGTGAACAAGTG 57.830 50.000 0.00 0.00 0.00 3.16
4243 4481 9.567848 AATGAGTTAACAAATACGCTAAAATGG 57.432 29.630 8.61 0.00 0.00 3.16
4245 4483 7.175293 TGAGTTAACAAATACGCTAAAATGGGT 59.825 33.333 8.61 0.00 36.98 4.51
4256 4494 6.707290 ACGCTAAAATGGGTCTATATGCATA 58.293 36.000 9.27 9.27 0.00 3.14
4257 4495 7.338710 ACGCTAAAATGGGTCTATATGCATAT 58.661 34.615 22.31 22.31 0.00 1.78
4258 4496 7.495934 ACGCTAAAATGGGTCTATATGCATATC 59.504 37.037 22.33 8.74 0.00 1.63
4259 4497 7.712639 CGCTAAAATGGGTCTATATGCATATCT 59.287 37.037 22.33 3.68 0.00 1.98
4314 4552 7.563724 TTGTTTATGGAGGGAGTAGTACTTT 57.436 36.000 0.00 0.00 0.00 2.66
4425 4663 1.080705 GTGCGGTCTCGTGCTAACT 60.081 57.895 0.00 0.00 38.89 2.24
4427 4665 1.100510 TGCGGTCTCGTGCTAACTAT 58.899 50.000 0.00 0.00 38.89 2.12
4443 4681 7.982354 GTGCTAACTATGTCTTGTAGAAGGAAT 59.018 37.037 0.00 0.00 0.00 3.01
4454 4692 6.657966 TCTTGTAGAAGGAATGACGTCTAAGA 59.342 38.462 17.92 0.00 0.00 2.10
4458 4696 4.404073 AGAAGGAATGACGTCTAAGATGCT 59.596 41.667 17.92 6.03 0.00 3.79
4470 4708 1.021390 AAGATGCTGCTGTGGCGTAC 61.021 55.000 0.00 0.00 42.25 3.67
4471 4709 1.741401 GATGCTGCTGTGGCGTACA 60.741 57.895 0.00 0.00 42.25 2.90
4482 4720 0.036164 TGGCGTACAAGTTGCAGGAT 59.964 50.000 1.81 0.00 0.00 3.24
4491 4729 3.270877 CAAGTTGCAGGATAGGGTACAC 58.729 50.000 0.00 0.00 0.00 2.90
4492 4730 1.838077 AGTTGCAGGATAGGGTACACC 59.162 52.381 0.00 0.00 40.67 4.16
4493 4731 1.557832 GTTGCAGGATAGGGTACACCA 59.442 52.381 0.00 0.00 43.89 4.17
4507 4745 1.963855 CACCATCGTGTTGCGGGAA 60.964 57.895 0.00 0.00 41.72 3.97
4541 4781 5.562307 GCATCGTATGAGTTCGTAGGTATGT 60.562 44.000 0.00 0.00 0.00 2.29
4542 4782 6.436261 CATCGTATGAGTTCGTAGGTATGTT 58.564 40.000 0.00 0.00 0.00 2.71
4584 4824 4.827835 TGGTATGTGATCTAGGCAGTAGTC 59.172 45.833 0.00 0.00 0.00 2.59
4593 4833 4.511636 GCAGTAGTCAGCCTGAGC 57.488 61.111 0.00 0.00 40.32 4.26
4594 4834 1.153469 GCAGTAGTCAGCCTGAGCC 60.153 63.158 0.00 0.00 41.25 4.70
4596 4836 0.610174 CAGTAGTCAGCCTGAGCCAA 59.390 55.000 0.00 0.00 41.25 4.52
4597 4837 0.610687 AGTAGTCAGCCTGAGCCAAC 59.389 55.000 0.00 0.00 41.25 3.77
4598 4838 0.391793 GTAGTCAGCCTGAGCCAACC 60.392 60.000 0.00 0.00 41.25 3.77
4599 4839 0.545309 TAGTCAGCCTGAGCCAACCT 60.545 55.000 0.00 0.00 41.25 3.50
4601 4841 1.073722 TCAGCCTGAGCCAACCTTG 59.926 57.895 0.00 0.00 41.25 3.61
4602 4842 2.282745 AGCCTGAGCCAACCTTGC 60.283 61.111 0.00 0.00 41.25 4.01
4603 4843 3.376918 GCCTGAGCCAACCTTGCC 61.377 66.667 0.00 0.00 0.00 4.52
4604 4844 3.058160 CCTGAGCCAACCTTGCCG 61.058 66.667 0.00 0.00 0.00 5.69
4605 4845 2.032528 CTGAGCCAACCTTGCCGA 59.967 61.111 0.00 0.00 0.00 5.54
4606 4846 2.281484 TGAGCCAACCTTGCCGAC 60.281 61.111 0.00 0.00 0.00 4.79
4607 4847 2.281484 GAGCCAACCTTGCCGACA 60.281 61.111 0.00 0.00 0.00 4.35
4608 4848 1.675641 GAGCCAACCTTGCCGACAT 60.676 57.895 0.00 0.00 0.00 3.06
4609 4849 0.392461 GAGCCAACCTTGCCGACATA 60.392 55.000 0.00 0.00 0.00 2.29
4610 4850 0.392998 AGCCAACCTTGCCGACATAG 60.393 55.000 0.00 0.00 0.00 2.23
4611 4851 1.376609 GCCAACCTTGCCGACATAGG 61.377 60.000 0.00 0.00 33.09 2.57
4612 4852 0.748005 CCAACCTTGCCGACATAGGG 60.748 60.000 5.31 0.00 31.88 3.53
4613 4853 0.251916 CAACCTTGCCGACATAGGGA 59.748 55.000 5.31 0.00 31.88 4.20
4614 4854 0.988832 AACCTTGCCGACATAGGGAA 59.011 50.000 5.31 0.00 39.34 3.97
4642 4882 2.877300 GCAGGAGAACACATGACACCAT 60.877 50.000 0.00 0.00 0.00 3.55
4658 4898 3.433306 ACCATCGAATTCCAAGGTGAA 57.567 42.857 0.00 0.00 0.00 3.18
4659 4899 3.968265 ACCATCGAATTCCAAGGTGAAT 58.032 40.909 0.00 0.00 36.53 2.57
4719 4959 1.497161 ATTAGCTGACCCTTAGCGGT 58.503 50.000 0.00 0.00 45.61 5.68
4726 4966 3.442625 GCTGACCCTTAGCGGTTAAATTT 59.557 43.478 0.00 0.00 35.79 1.82
4729 4969 6.052405 TGACCCTTAGCGGTTAAATTTAGA 57.948 37.500 0.00 0.00 35.79 2.10
4731 4971 5.434408 ACCCTTAGCGGTTAAATTTAGAGG 58.566 41.667 0.00 0.25 29.19 3.69
4733 4973 4.275196 CCTTAGCGGTTAAATTTAGAGGGC 59.725 45.833 0.00 2.01 0.00 5.19
4745 4985 7.497925 AAATTTAGAGGGCGAGCTTAATTAG 57.502 36.000 0.00 0.00 0.00 1.73
4746 4986 5.609533 TTTAGAGGGCGAGCTTAATTAGT 57.390 39.130 0.00 0.00 0.00 2.24
4747 4987 6.720112 TTTAGAGGGCGAGCTTAATTAGTA 57.280 37.500 0.00 0.00 0.00 1.82
4748 4988 6.720112 TTAGAGGGCGAGCTTAATTAGTAA 57.280 37.500 0.00 0.00 0.00 2.24
4749 4989 5.810080 AGAGGGCGAGCTTAATTAGTAAT 57.190 39.130 0.00 0.00 0.00 1.89
4750 4990 6.912951 AGAGGGCGAGCTTAATTAGTAATA 57.087 37.500 0.00 0.00 0.00 0.98
4751 4991 6.926313 AGAGGGCGAGCTTAATTAGTAATAG 58.074 40.000 0.00 0.00 0.00 1.73
4752 4992 6.720288 AGAGGGCGAGCTTAATTAGTAATAGA 59.280 38.462 0.00 0.00 0.00 1.98
4753 4993 6.926313 AGGGCGAGCTTAATTAGTAATAGAG 58.074 40.000 0.00 0.00 0.00 2.43
4754 4994 5.577554 GGGCGAGCTTAATTAGTAATAGAGC 59.422 44.000 16.80 16.80 32.32 4.09
4762 5002 9.314321 GCTTAATTAGTAATAGAGCACAAGTGA 57.686 33.333 18.47 0.00 32.40 3.41
4772 5012 3.750130 AGAGCACAAGTGAATCACATGAC 59.250 43.478 23.05 14.66 35.44 3.06
4793 5033 2.683465 GCCCAGCCTCCAGATTCCA 61.683 63.158 0.00 0.00 0.00 3.53
4799 5039 1.006281 AGCCTCCAGATTCCAAATGCA 59.994 47.619 0.00 0.00 0.00 3.96
4802 5042 3.118519 GCCTCCAGATTCCAAATGCATTT 60.119 43.478 18.99 18.99 0.00 2.32
4805 5045 6.642430 CCTCCAGATTCCAAATGCATTTAAA 58.358 36.000 23.69 19.73 0.00 1.52
4806 5046 6.759827 CCTCCAGATTCCAAATGCATTTAAAG 59.240 38.462 23.69 15.28 0.00 1.85
4887 5127 4.471904 TCTAAGTCAAAGATCGCACCAT 57.528 40.909 0.00 0.00 0.00 3.55
4888 5128 4.433615 TCTAAGTCAAAGATCGCACCATC 58.566 43.478 0.00 0.00 0.00 3.51
4889 5129 2.768253 AGTCAAAGATCGCACCATCA 57.232 45.000 0.00 0.00 0.00 3.07
4890 5130 2.350522 AGTCAAAGATCGCACCATCAC 58.649 47.619 0.00 0.00 0.00 3.06
4902 5148 4.332543 TCGCACCATCACTTACATGAATTC 59.667 41.667 0.00 0.00 30.82 2.17
4910 5156 5.015515 TCACTTACATGAATTCAATGCCCA 58.984 37.500 13.09 0.00 0.00 5.36
4925 5171 1.962807 TGCCCAAATCAGGTCAACTTG 59.037 47.619 0.00 0.00 0.00 3.16
4946 5208 5.263968 TGAAGCTAGGCTACAACTATGTC 57.736 43.478 0.00 0.00 38.25 3.06
4952 5214 6.595716 AGCTAGGCTACAACTATGTCAAAAAG 59.404 38.462 0.00 0.00 41.05 2.27
4953 5215 6.371825 GCTAGGCTACAACTATGTCAAAAAGT 59.628 38.462 0.00 0.00 41.05 2.66
4958 5220 7.291567 GCTACAACTATGTCAAAAAGTGAGAC 58.708 38.462 0.00 0.00 41.05 3.36
4987 5249 5.414454 GGAAAACAATGGTAGCTGATGTACA 59.586 40.000 0.00 0.00 0.00 2.90
4988 5250 6.072175 GGAAAACAATGGTAGCTGATGTACAA 60.072 38.462 0.00 0.00 0.00 2.41
4989 5251 5.880054 AACAATGGTAGCTGATGTACAAC 57.120 39.130 0.00 0.00 0.00 3.32
4990 5252 4.261801 ACAATGGTAGCTGATGTACAACC 58.738 43.478 0.00 2.00 0.00 3.77
4991 5253 3.560636 ATGGTAGCTGATGTACAACCC 57.439 47.619 0.00 0.00 0.00 4.11
4992 5254 2.261729 TGGTAGCTGATGTACAACCCA 58.738 47.619 0.00 0.00 0.00 4.51
4993 5255 2.843730 TGGTAGCTGATGTACAACCCAT 59.156 45.455 0.00 0.00 0.00 4.00
4994 5256 4.034410 TGGTAGCTGATGTACAACCCATA 58.966 43.478 0.00 0.00 0.00 2.74
4995 5257 4.658435 TGGTAGCTGATGTACAACCCATAT 59.342 41.667 0.00 0.00 0.00 1.78
4996 5258 5.131977 TGGTAGCTGATGTACAACCCATATT 59.868 40.000 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.051027 CGAGTACAACATTTCATCACATTTTAC 57.949 33.333 0.00 0.00 0.00 2.01
51 52 8.779303 ACGAGTACAACATTTCATCACATTTTA 58.221 29.630 0.00 0.00 0.00 1.52
52 53 7.648142 ACGAGTACAACATTTCATCACATTTT 58.352 30.769 0.00 0.00 0.00 1.82
53 54 7.202016 ACGAGTACAACATTTCATCACATTT 57.798 32.000 0.00 0.00 0.00 2.32
54 55 6.801539 ACGAGTACAACATTTCATCACATT 57.198 33.333 0.00 0.00 0.00 2.71
55 56 6.871492 TGTACGAGTACAACATTTCATCACAT 59.129 34.615 13.06 0.00 42.49 3.21
56 57 6.217294 TGTACGAGTACAACATTTCATCACA 58.783 36.000 13.06 0.00 42.49 3.58
57 58 6.699895 TGTACGAGTACAACATTTCATCAC 57.300 37.500 13.06 0.00 42.49 3.06
69 70 7.614124 AGGAAAAACTTTTTGTACGAGTACA 57.386 32.000 11.61 11.61 43.61 2.90
72 73 9.328845 TGTATAGGAAAAACTTTTTGTACGAGT 57.671 29.630 4.17 0.00 0.00 4.18
73 74 9.807386 CTGTATAGGAAAAACTTTTTGTACGAG 57.193 33.333 4.17 1.58 0.00 4.18
74 75 9.545105 TCTGTATAGGAAAAACTTTTTGTACGA 57.455 29.630 4.17 0.00 0.00 3.43
83 84 9.286170 GGAAGAGTTTCTGTATAGGAAAAACTT 57.714 33.333 6.34 13.77 39.55 2.66
84 85 8.437575 TGGAAGAGTTTCTGTATAGGAAAAACT 58.562 33.333 4.98 4.98 41.50 2.66
85 86 8.617290 TGGAAGAGTTTCTGTATAGGAAAAAC 57.383 34.615 3.33 0.00 34.97 2.43
86 87 8.656806 TCTGGAAGAGTTTCTGTATAGGAAAAA 58.343 33.333 3.33 0.00 38.67 1.94
87 88 8.202461 TCTGGAAGAGTTTCTGTATAGGAAAA 57.798 34.615 3.33 0.00 38.67 2.29
88 89 7.792364 TCTGGAAGAGTTTCTGTATAGGAAA 57.208 36.000 0.00 0.00 38.67 3.13
120 121 9.167311 TGGAGCTATTTGATTCTAAAAGAGTTC 57.833 33.333 0.00 0.00 36.16 3.01
122 123 9.171877 CTTGGAGCTATTTGATTCTAAAAGAGT 57.828 33.333 0.00 0.00 30.36 3.24
186 192 7.334090 AGTCAGACATGATTAAGTATTGCACT 58.666 34.615 0.00 0.00 37.87 4.40
258 270 5.630415 ACCTCCTAGCTATATGCACAAAA 57.370 39.130 0.00 0.00 45.94 2.44
272 284 5.659079 AGAAATACTCTGGTGAACCTCCTAG 59.341 44.000 0.37 0.00 36.82 3.02
273 285 5.422331 CAGAAATACTCTGGTGAACCTCCTA 59.578 44.000 0.37 0.00 46.89 2.94
274 286 4.223923 CAGAAATACTCTGGTGAACCTCCT 59.776 45.833 0.37 0.00 46.89 3.69
299 321 6.797033 GCAACACTCATTAACAAGTACATCAC 59.203 38.462 0.00 0.00 0.00 3.06
365 390 3.851128 GAGGCTCCCGGTAGGCAC 61.851 72.222 22.78 12.91 44.19 5.01
393 418 0.179124 CACAAGCTCCGGACTCTAGC 60.179 60.000 0.00 1.22 36.48 3.42
394 419 0.457851 CCACAAGCTCCGGACTCTAG 59.542 60.000 0.00 0.00 0.00 2.43
395 420 0.251653 ACCACAAGCTCCGGACTCTA 60.252 55.000 0.00 0.00 0.00 2.43
396 421 1.534235 ACCACAAGCTCCGGACTCT 60.534 57.895 0.00 0.00 0.00 3.24
397 422 1.374758 CACCACAAGCTCCGGACTC 60.375 63.158 0.00 0.00 0.00 3.36
398 423 2.743718 CACCACAAGCTCCGGACT 59.256 61.111 0.00 0.00 0.00 3.85
399 424 3.050275 GCACCACAAGCTCCGGAC 61.050 66.667 0.00 0.00 0.00 4.79
402 430 3.730761 GCTGCACCACAAGCTCCG 61.731 66.667 0.00 0.00 0.00 4.63
415 443 0.321122 ACTGGTTCTGCTACTGCTGC 60.321 55.000 0.00 0.00 40.48 5.25
431 459 2.290641 GCAGAGTGTAACCAACCAACTG 59.709 50.000 0.00 0.00 37.80 3.16
462 490 2.103373 TGTGGAGATACAGTGGAGCTC 58.897 52.381 12.45 12.45 0.00 4.09
479 507 1.802960 CACTTGAGTGGCTAGCTTGTG 59.197 52.381 15.72 9.21 42.10 3.33
533 570 1.236628 CTTGCTTGCTTCAGCTCACT 58.763 50.000 0.00 0.00 40.79 3.41
540 577 0.540133 TGGATGCCTTGCTTGCTTCA 60.540 50.000 9.50 0.00 35.30 3.02
541 578 0.604578 TTGGATGCCTTGCTTGCTTC 59.395 50.000 0.00 0.00 33.47 3.86
542 579 0.319405 GTTGGATGCCTTGCTTGCTT 59.681 50.000 0.00 0.00 0.00 3.91
543 580 1.538687 GGTTGGATGCCTTGCTTGCT 61.539 55.000 0.00 0.00 0.00 3.91
544 581 1.079612 GGTTGGATGCCTTGCTTGC 60.080 57.895 0.00 0.00 0.00 4.01
545 582 0.529378 GAGGTTGGATGCCTTGCTTG 59.471 55.000 0.00 0.00 36.29 4.01
546 583 0.613012 GGAGGTTGGATGCCTTGCTT 60.613 55.000 0.00 0.00 36.29 3.91
547 584 1.000396 GGAGGTTGGATGCCTTGCT 60.000 57.895 0.00 0.00 36.29 3.91
548 585 2.054453 GGGAGGTTGGATGCCTTGC 61.054 63.158 0.00 0.00 36.29 4.01
549 586 0.040204 AAGGGAGGTTGGATGCCTTG 59.960 55.000 0.00 0.00 45.65 3.61
550 587 2.491271 AAGGGAGGTTGGATGCCTT 58.509 52.632 0.00 0.00 42.98 4.35
551 588 0.919710 GTAAGGGAGGTTGGATGCCT 59.080 55.000 0.00 0.00 40.74 4.75
552 589 0.106669 GGTAAGGGAGGTTGGATGCC 60.107 60.000 0.00 0.00 0.00 4.40
553 590 0.919710 AGGTAAGGGAGGTTGGATGC 59.080 55.000 0.00 0.00 0.00 3.91
554 591 2.357154 CCAAGGTAAGGGAGGTTGGATG 60.357 54.545 0.00 0.00 40.18 3.51
555 592 1.923148 CCAAGGTAAGGGAGGTTGGAT 59.077 52.381 0.00 0.00 40.18 3.41
556 593 1.132332 TCCAAGGTAAGGGAGGTTGGA 60.132 52.381 0.00 0.00 43.47 3.53
557 594 1.368374 TCCAAGGTAAGGGAGGTTGG 58.632 55.000 0.00 0.00 39.28 3.77
558 595 2.846827 AGATCCAAGGTAAGGGAGGTTG 59.153 50.000 0.00 0.00 36.45 3.77
559 596 2.846827 CAGATCCAAGGTAAGGGAGGTT 59.153 50.000 0.00 0.00 36.45 3.50
560 597 2.045885 TCAGATCCAAGGTAAGGGAGGT 59.954 50.000 0.00 0.00 36.45 3.85
561 598 2.764269 TCAGATCCAAGGTAAGGGAGG 58.236 52.381 0.00 0.00 36.45 4.30
562 599 3.432890 GCTTCAGATCCAAGGTAAGGGAG 60.433 52.174 4.58 0.00 36.45 4.30
563 600 2.505819 GCTTCAGATCCAAGGTAAGGGA 59.494 50.000 4.58 0.00 37.64 4.20
564 601 2.239654 TGCTTCAGATCCAAGGTAAGGG 59.760 50.000 4.58 0.00 0.00 3.95
565 602 3.274288 GTGCTTCAGATCCAAGGTAAGG 58.726 50.000 4.58 0.00 0.00 2.69
566 603 2.932614 CGTGCTTCAGATCCAAGGTAAG 59.067 50.000 4.58 0.00 0.00 2.34
567 604 2.354704 CCGTGCTTCAGATCCAAGGTAA 60.355 50.000 4.58 0.00 0.00 2.85
568 605 1.207089 CCGTGCTTCAGATCCAAGGTA 59.793 52.381 4.58 0.00 0.00 3.08
569 606 0.036010 CCGTGCTTCAGATCCAAGGT 60.036 55.000 4.58 0.00 0.00 3.50
570 607 0.036010 ACCGTGCTTCAGATCCAAGG 60.036 55.000 4.58 2.59 34.83 3.61
571 608 1.813513 AACCGTGCTTCAGATCCAAG 58.186 50.000 0.00 0.00 0.00 3.61
572 609 2.037902 TGTAACCGTGCTTCAGATCCAA 59.962 45.455 0.00 0.00 0.00 3.53
573 610 1.621317 TGTAACCGTGCTTCAGATCCA 59.379 47.619 0.00 0.00 0.00 3.41
629 689 4.502016 AGCATGCAGAGGTTATATCGATG 58.498 43.478 21.98 0.00 0.00 3.84
632 692 5.316327 TCTAGCATGCAGAGGTTATATCG 57.684 43.478 21.98 0.00 0.00 2.92
633 693 7.102346 ACAATCTAGCATGCAGAGGTTATATC 58.898 38.462 21.98 0.00 0.00 1.63
634 694 7.013823 ACAATCTAGCATGCAGAGGTTATAT 57.986 36.000 21.98 5.59 0.00 0.86
636 696 5.301835 ACAATCTAGCATGCAGAGGTTAT 57.698 39.130 21.98 5.49 0.00 1.89
637 697 4.760530 ACAATCTAGCATGCAGAGGTTA 57.239 40.909 21.98 0.78 0.00 2.85
639 699 4.760530 TTACAATCTAGCATGCAGAGGT 57.239 40.909 21.98 20.78 0.00 3.85
640 700 5.549347 AGATTACAATCTAGCATGCAGAGG 58.451 41.667 21.98 16.95 43.66 3.69
641 701 6.566187 GCAAGATTACAATCTAGCATGCAGAG 60.566 42.308 21.98 16.45 44.67 3.35
642 702 5.237996 GCAAGATTACAATCTAGCATGCAGA 59.762 40.000 21.98 19.63 44.67 4.26
643 703 5.450171 GCAAGATTACAATCTAGCATGCAG 58.550 41.667 21.98 14.96 44.67 4.41
644 704 4.024641 CGCAAGATTACAATCTAGCATGCA 60.025 41.667 21.98 5.01 44.67 3.96
645 705 4.461405 CGCAAGATTACAATCTAGCATGC 58.539 43.478 10.51 10.51 44.67 4.06
646 706 4.612259 GCCGCAAGATTACAATCTAGCATG 60.612 45.833 4.93 1.78 44.67 4.06
647 707 3.499918 GCCGCAAGATTACAATCTAGCAT 59.500 43.478 4.93 0.00 44.67 3.79
648 708 2.872245 GCCGCAAGATTACAATCTAGCA 59.128 45.455 4.93 0.00 44.67 3.49
709 769 8.727910 CACTTGTTACTCGCCTATATATGTCTA 58.272 37.037 0.00 0.00 0.00 2.59
710 770 7.230913 ACACTTGTTACTCGCCTATATATGTCT 59.769 37.037 0.00 0.00 0.00 3.41
711 771 7.368833 ACACTTGTTACTCGCCTATATATGTC 58.631 38.462 0.00 0.00 0.00 3.06
712 772 7.286215 ACACTTGTTACTCGCCTATATATGT 57.714 36.000 0.00 0.00 0.00 2.29
713 773 9.504710 GATACACTTGTTACTCGCCTATATATG 57.495 37.037 0.00 0.00 0.00 1.78
714 774 9.239551 TGATACACTTGTTACTCGCCTATATAT 57.760 33.333 0.00 0.00 0.00 0.86
715 775 8.625786 TGATACACTTGTTACTCGCCTATATA 57.374 34.615 0.00 0.00 0.00 0.86
716 776 7.520451 TGATACACTTGTTACTCGCCTATAT 57.480 36.000 0.00 0.00 0.00 0.86
717 777 6.947644 TGATACACTTGTTACTCGCCTATA 57.052 37.500 0.00 0.00 0.00 1.31
723 783 5.337554 TCGGAATGATACACTTGTTACTCG 58.662 41.667 0.00 0.00 0.00 4.18
729 789 4.338400 TCTCGATCGGAATGATACACTTGT 59.662 41.667 16.41 0.00 37.47 3.16
730 790 4.860072 TCTCGATCGGAATGATACACTTG 58.140 43.478 16.41 0.00 37.47 3.16
744 804 1.212616 GGATTGTTGCCTCTCGATCG 58.787 55.000 9.36 9.36 0.00 3.69
745 805 2.315925 TGGATTGTTGCCTCTCGATC 57.684 50.000 0.00 0.00 0.00 3.69
746 806 2.636830 CTTGGATTGTTGCCTCTCGAT 58.363 47.619 0.00 0.00 0.00 3.59
747 807 1.339055 CCTTGGATTGTTGCCTCTCGA 60.339 52.381 0.00 0.00 0.00 4.04
813 883 3.886550 CTTGGCCTTCACCCCACCC 62.887 68.421 3.32 0.00 0.00 4.61
814 884 2.283173 CTTGGCCTTCACCCCACC 60.283 66.667 3.32 0.00 0.00 4.61
826 896 1.080298 GCATGTGAGGTTGCTTGGC 60.080 57.895 0.00 0.00 35.95 4.52
827 897 0.242825 CAGCATGTGAGGTTGCTTGG 59.757 55.000 0.00 0.00 46.71 3.61
828 898 3.786809 CAGCATGTGAGGTTGCTTG 57.213 52.632 0.00 0.00 46.71 4.01
918 991 4.161189 TCGAGATTTCAGCTCCAAGATCTT 59.839 41.667 0.88 0.88 0.00 2.40
919 992 3.703556 TCGAGATTTCAGCTCCAAGATCT 59.296 43.478 0.00 0.00 0.00 2.75
920 993 4.052159 TCGAGATTTCAGCTCCAAGATC 57.948 45.455 0.00 0.00 0.00 2.75
921 994 4.502950 GGATCGAGATTTCAGCTCCAAGAT 60.503 45.833 0.00 0.00 0.00 2.40
922 995 3.181471 GGATCGAGATTTCAGCTCCAAGA 60.181 47.826 0.00 0.00 0.00 3.02
924 997 2.501316 TGGATCGAGATTTCAGCTCCAA 59.499 45.455 0.00 0.00 0.00 3.53
926 999 2.898729 TGGATCGAGATTTCAGCTCC 57.101 50.000 0.00 0.00 0.00 4.70
940 1049 0.307146 GCTTGCTTGCTCGATGGATC 59.693 55.000 0.00 0.00 0.00 3.36
978 1088 2.203401 GCTGCTTGCTCAGATCACTAG 58.797 52.381 0.00 0.00 38.95 2.57
979 1089 1.134580 GGCTGCTTGCTCAGATCACTA 60.135 52.381 0.00 0.00 42.39 2.74
980 1090 0.392729 GGCTGCTTGCTCAGATCACT 60.393 55.000 0.00 0.00 42.39 3.41
981 1091 0.675837 TGGCTGCTTGCTCAGATCAC 60.676 55.000 0.00 0.00 42.39 3.06
1326 1436 1.437160 GAGCGAGAGGAGCAGGAAG 59.563 63.158 0.00 0.00 37.01 3.46
1459 1569 4.003788 CGGCAGGTGTCGGAGGTT 62.004 66.667 0.00 0.00 39.84 3.50
1467 1577 2.526873 AGGTTCTCCGGCAGGTGT 60.527 61.111 1.81 0.00 39.05 4.16
1656 1787 2.350134 CAGCCAAGGCAGAGCAGA 59.650 61.111 14.40 0.00 44.88 4.26
1659 1790 2.675772 AAGCAGCCAAGGCAGAGC 60.676 61.111 14.40 13.64 44.88 4.09
1668 1799 0.679002 GCTTGATCCAGAAGCAGCCA 60.679 55.000 10.52 0.00 44.43 4.75
1724 1855 1.059942 GTATTTGCTGCCACGTTTGC 58.940 50.000 0.00 0.00 0.00 3.68
1752 1883 1.227002 GCCGTCCTCGAGGTCATTC 60.227 63.158 30.17 12.71 39.71 2.67
1776 1907 3.145551 GGGAAGTAGGCGCCGAGA 61.146 66.667 23.20 7.86 0.00 4.04
1800 1931 0.471617 ACATGGGCATCTGTAGGAGC 59.528 55.000 0.00 0.00 0.00 4.70
1806 1937 1.277842 TCGTTACACATGGGCATCTGT 59.722 47.619 0.00 0.00 0.00 3.41
1854 1985 4.994907 ACAAAGCATGCATGATGTACAT 57.005 36.364 30.64 8.43 40.17 2.29
1855 1986 5.824097 AGATACAAAGCATGCATGATGTACA 59.176 36.000 30.64 15.87 34.14 2.90
1856 1987 6.140786 CAGATACAAAGCATGCATGATGTAC 58.859 40.000 30.64 22.60 34.14 2.90
1857 1988 5.824097 ACAGATACAAAGCATGCATGATGTA 59.176 36.000 30.64 28.75 34.14 2.29
1858 1989 4.643334 ACAGATACAAAGCATGCATGATGT 59.357 37.500 30.64 27.76 34.14 3.06
1859 1990 5.183014 ACAGATACAAAGCATGCATGATG 57.817 39.130 30.64 24.14 34.84 3.07
1860 1991 5.847111 AACAGATACAAAGCATGCATGAT 57.153 34.783 30.64 22.50 0.00 2.45
1861 1992 5.183522 TCAAACAGATACAAAGCATGCATGA 59.816 36.000 30.64 8.50 0.00 3.07
1896 2027 8.443160 ACACGTCAGTTCATTAAAATGTATGAG 58.557 33.333 2.80 3.96 37.65 2.90
1903 2035 6.708949 ACACCTACACGTCAGTTCATTAAAAT 59.291 34.615 0.00 0.00 0.00 1.82
1914 2050 2.071540 TCTCGTACACCTACACGTCAG 58.928 52.381 0.00 0.00 39.18 3.51
1915 2051 1.800586 GTCTCGTACACCTACACGTCA 59.199 52.381 0.00 0.00 39.18 4.35
1916 2052 1.201855 CGTCTCGTACACCTACACGTC 60.202 57.143 0.00 0.00 39.18 4.34
1917 2053 0.792640 CGTCTCGTACACCTACACGT 59.207 55.000 0.00 0.00 39.18 4.49
1918 2054 0.792640 ACGTCTCGTACACCTACACG 59.207 55.000 0.00 0.00 38.73 4.49
1919 2055 1.201855 CGACGTCTCGTACACCTACAC 60.202 57.143 14.70 0.00 41.37 2.90
1920 2056 1.070821 CGACGTCTCGTACACCTACA 58.929 55.000 14.70 0.00 41.37 2.74
1921 2057 1.350193 TCGACGTCTCGTACACCTAC 58.650 55.000 14.70 0.00 41.37 3.18
1922 2058 2.159184 AGATCGACGTCTCGTACACCTA 60.159 50.000 14.70 0.00 41.37 3.08
2047 2184 0.325671 CTCCCCTCTGGCTCCACTTA 60.326 60.000 0.00 0.00 0.00 2.24
2055 2192 0.107459 GATGTTCACTCCCCTCTGGC 60.107 60.000 0.00 0.00 0.00 4.85
2200 2337 0.390472 CGGTGAGCTTGAGGAAGTCC 60.390 60.000 0.00 0.00 0.00 3.85
2499 2699 7.855784 TCCATCCATTATCTACACATGTAGT 57.144 36.000 16.65 1.92 46.08 2.73
2512 2712 9.312904 CCCTACAAACAAATATCCATCCATTAT 57.687 33.333 0.00 0.00 0.00 1.28
2513 2713 7.728083 CCCCTACAAACAAATATCCATCCATTA 59.272 37.037 0.00 0.00 0.00 1.90
2514 2714 6.554605 CCCCTACAAACAAATATCCATCCATT 59.445 38.462 0.00 0.00 0.00 3.16
2521 2729 4.647853 GGGTTCCCCTACAAACAAATATCC 59.352 45.833 0.00 0.00 41.34 2.59
2737 2945 2.821366 GTGGTGCGCTCCATCCAG 60.821 66.667 31.67 0.00 39.81 3.86
2794 3002 4.624913 TGAGGTAGATGAACTTCCATCCT 58.375 43.478 0.00 0.00 42.89 3.24
2832 3040 2.898612 GGGCCAGAGGGAGTAGTATAAC 59.101 54.545 4.39 0.00 35.59 1.89
2850 3058 4.798387 CACAAACGCTCTTATATTTTGGGC 59.202 41.667 0.00 0.00 32.53 5.36
2871 3079 6.980397 TGCATCCGATATCATATATGTGTCAC 59.020 38.462 12.42 0.00 0.00 3.67
2878 3086 9.033711 AGCTAGATTGCATCCGATATCATATAT 57.966 33.333 3.12 0.00 34.99 0.86
2883 3091 6.462067 CCATAGCTAGATTGCATCCGATATCA 60.462 42.308 3.12 0.00 34.99 2.15
2884 3092 5.925397 CCATAGCTAGATTGCATCCGATATC 59.075 44.000 0.00 0.00 34.99 1.63
2942 3162 4.152402 CACAGAGCACCTACACAAATACAC 59.848 45.833 0.00 0.00 0.00 2.90
2970 3190 2.728435 GGCCTGGTACGATTCCGGT 61.728 63.158 0.00 0.00 40.78 5.28
3089 3309 6.200475 CAGATCTGTATGCAAGTGTGACTATG 59.800 42.308 14.95 0.00 0.00 2.23
3107 3341 2.100584 GACCTAGTCAGCACCAGATCTG 59.899 54.545 16.24 16.24 32.09 2.90
3115 3349 3.195825 ACATACAAGGACCTAGTCAGCAC 59.804 47.826 0.00 0.00 33.68 4.40
3140 3374 3.374745 CGGGATCTGCATGCAATTAAAC 58.625 45.455 22.88 9.73 0.00 2.01
3162 3396 0.111253 AGGTTGGCCTTCTTCCACAG 59.889 55.000 3.32 0.00 44.18 3.66
3347 3581 1.489560 CGAAGGGGAAGGACTTGGGT 61.490 60.000 0.00 0.00 0.00 4.51
3365 3599 2.002505 AGAGGAGGTATGGGATGACG 57.997 55.000 0.00 0.00 0.00 4.35
3401 3635 0.736053 TGGCGTTGAACTTTGTGACC 59.264 50.000 0.00 0.00 0.00 4.02
3404 3638 1.066908 ACCATGGCGTTGAACTTTGTG 59.933 47.619 13.04 0.00 0.00 3.33
3407 3641 1.336755 GACACCATGGCGTTGAACTTT 59.663 47.619 13.04 0.00 0.00 2.66
3446 3680 1.313812 CGACCCACTCGTAGGAGCTT 61.314 60.000 12.30 0.00 44.48 3.74
3470 3704 2.747855 GTCCTGCCGGCCTTCTTG 60.748 66.667 26.77 5.77 0.00 3.02
3557 3791 2.203379 TCGGACACTCCACGGACA 60.203 61.111 0.00 0.00 35.91 4.02
3563 3797 2.997315 CCAGCCTCGGACACTCCA 60.997 66.667 0.00 0.00 35.91 3.86
3653 3887 3.503363 GCGGCTGCCAGTGATGTC 61.503 66.667 20.29 0.00 33.98 3.06
3698 3932 3.350833 CTTCTTGAAGATCCTGTTGGGG 58.649 50.000 4.48 0.00 35.33 4.96
3728 3962 1.076632 GAGGAGGAGGAAGGCGAGA 60.077 63.158 0.00 0.00 0.00 4.04
3731 3965 1.745264 GATGAGGAGGAGGAAGGCG 59.255 63.158 0.00 0.00 0.00 5.52
3800 4034 2.266055 GTGACGCCCTGGAAGAGG 59.734 66.667 0.00 0.00 42.38 3.69
3877 4111 0.605319 TGGCAAGTAGGGTCGCTTTG 60.605 55.000 0.00 0.00 0.00 2.77
3882 4116 0.464373 ATGCATGGCAAGTAGGGTCG 60.464 55.000 0.00 0.00 43.62 4.79
4026 4260 7.448420 ACATTGAGTCTTTGATCTCTCAAGAA 58.552 34.615 11.13 0.00 45.63 2.52
4099 4333 0.670162 TTGCTTGCCTCTCACTTTGC 59.330 50.000 0.00 0.00 0.00 3.68
4148 4382 0.530744 TCACGGATGGAGTAGTGTGC 59.469 55.000 0.00 0.00 36.16 4.57
4153 4387 3.254060 CACTTGTTCACGGATGGAGTAG 58.746 50.000 0.00 0.00 0.00 2.57
4209 4447 7.044966 GCGTATTTGTTAACTCATTCAATTCGG 60.045 37.037 7.22 0.00 0.00 4.30
4256 4494 9.930693 ACGTTCTAACTCTTTTCTAATTCAGAT 57.069 29.630 0.00 0.00 31.77 2.90
4257 4495 9.408069 GACGTTCTAACTCTTTTCTAATTCAGA 57.592 33.333 0.00 0.00 0.00 3.27
4258 4496 9.413048 AGACGTTCTAACTCTTTTCTAATTCAG 57.587 33.333 0.00 0.00 0.00 3.02
4259 4497 9.760077 AAGACGTTCTAACTCTTTTCTAATTCA 57.240 29.630 0.00 0.00 0.00 2.57
4311 4549 3.802685 CGGAAGAAGGCTACCGAATAAAG 59.197 47.826 14.08 0.00 46.94 1.85
4380 4618 9.865321 GATCAATATCCAATGGTCCATAATTTG 57.135 33.333 4.33 0.03 0.00 2.32
4395 4633 1.686587 AGACCGCACGATCAATATCCA 59.313 47.619 0.00 0.00 0.00 3.41
4402 4640 2.178273 CACGAGACCGCACGATCA 59.822 61.111 0.00 0.00 39.95 2.92
4425 4663 6.377429 AGACGTCATTCCTTCTACAAGACATA 59.623 38.462 19.50 0.00 0.00 2.29
4427 4665 4.523173 AGACGTCATTCCTTCTACAAGACA 59.477 41.667 19.50 0.00 0.00 3.41
4443 4681 1.546029 ACAGCAGCATCTTAGACGTCA 59.454 47.619 19.50 0.48 0.00 4.35
4454 4692 1.300971 CTTGTACGCCACAGCAGCAT 61.301 55.000 0.00 0.00 38.72 3.79
4458 4696 1.781025 GCAACTTGTACGCCACAGCA 61.781 55.000 0.00 0.00 38.72 4.41
4470 4708 3.270877 GTGTACCCTATCCTGCAACTTG 58.729 50.000 0.00 0.00 0.00 3.16
4471 4709 2.238898 GGTGTACCCTATCCTGCAACTT 59.761 50.000 0.00 0.00 0.00 2.66
4507 4745 4.973168 ACTCATACGATGCCCATTACATT 58.027 39.130 0.00 0.00 0.00 2.71
4561 4801 4.804597 ACTACTGCCTAGATCACATACCA 58.195 43.478 0.00 0.00 0.00 3.25
4563 4803 5.563867 GCTGACTACTGCCTAGATCACATAC 60.564 48.000 0.00 0.00 35.44 2.39
4584 4824 2.633509 GCAAGGTTGGCTCAGGCTG 61.634 63.158 8.58 8.58 38.73 4.85
4593 4833 0.748005 CCCTATGTCGGCAAGGTTGG 60.748 60.000 14.42 0.94 0.00 3.77
4594 4834 0.251916 TCCCTATGTCGGCAAGGTTG 59.748 55.000 14.42 3.86 0.00 3.77
4596 4836 0.541863 CTTCCCTATGTCGGCAAGGT 59.458 55.000 14.42 0.00 0.00 3.50
4597 4837 0.815615 GCTTCCCTATGTCGGCAAGG 60.816 60.000 0.00 2.11 0.00 3.61
4598 4838 0.815615 GGCTTCCCTATGTCGGCAAG 60.816 60.000 0.00 0.00 0.00 4.01
4599 4839 1.223487 GGCTTCCCTATGTCGGCAA 59.777 57.895 0.00 0.00 0.00 4.52
4601 4841 2.111251 GGGCTTCCCTATGTCGGC 59.889 66.667 0.00 0.00 41.34 5.54
4602 4842 0.179045 CTTGGGCTTCCCTATGTCGG 60.179 60.000 3.27 0.00 45.70 4.79
4603 4843 0.815615 GCTTGGGCTTCCCTATGTCG 60.816 60.000 3.27 0.00 45.70 4.35
4604 4844 0.255890 TGCTTGGGCTTCCCTATGTC 59.744 55.000 3.27 0.00 45.70 3.06
4605 4845 0.257039 CTGCTTGGGCTTCCCTATGT 59.743 55.000 3.27 0.00 45.70 2.29
4606 4846 0.466922 CCTGCTTGGGCTTCCCTATG 60.467 60.000 3.27 0.00 45.70 2.23
4607 4847 0.624500 TCCTGCTTGGGCTTCCCTAT 60.625 55.000 3.27 0.00 45.70 2.57
4608 4848 1.229820 TCCTGCTTGGGCTTCCCTA 60.230 57.895 3.27 0.00 45.70 3.53
4609 4849 2.532715 TCCTGCTTGGGCTTCCCT 60.533 61.111 3.27 0.00 45.70 4.20
4610 4850 2.044551 CTCCTGCTTGGGCTTCCC 60.045 66.667 0.00 0.00 45.71 3.97
4611 4851 0.962855 GTTCTCCTGCTTGGGCTTCC 60.963 60.000 0.00 0.00 39.59 3.46
4612 4852 0.250901 TGTTCTCCTGCTTGGGCTTC 60.251 55.000 0.00 0.00 39.59 3.86
4613 4853 0.538287 GTGTTCTCCTGCTTGGGCTT 60.538 55.000 0.00 0.00 39.59 4.35
4614 4854 1.073897 GTGTTCTCCTGCTTGGGCT 59.926 57.895 0.00 0.00 39.59 5.19
4622 4862 2.549064 TGGTGTCATGTGTTCTCCTG 57.451 50.000 0.00 0.00 0.00 3.86
4685 4925 5.511729 GTCAGCTAATTGCCGTGTAAAATTC 59.488 40.000 0.00 0.00 44.23 2.17
4708 4948 5.434408 CCTCTAAATTTAACCGCTAAGGGT 58.566 41.667 0.00 0.00 46.96 4.34
4714 4954 2.093341 TCGCCCTCTAAATTTAACCGCT 60.093 45.455 0.00 0.00 0.00 5.52
4715 4955 2.282407 TCGCCCTCTAAATTTAACCGC 58.718 47.619 0.00 0.00 0.00 5.68
4719 4959 7.875327 AATTAAGCTCGCCCTCTAAATTTAA 57.125 32.000 0.00 0.00 0.00 1.52
4726 4966 6.912951 ATTACTAATTAAGCTCGCCCTCTA 57.087 37.500 0.00 0.00 0.00 2.43
4729 4969 6.572703 GCTCTATTACTAATTAAGCTCGCCCT 60.573 42.308 0.00 0.00 0.00 5.19
4731 4971 6.089685 GTGCTCTATTACTAATTAAGCTCGCC 59.910 42.308 12.68 1.43 31.95 5.54
4733 4973 8.575565 TTGTGCTCTATTACTAATTAAGCTCG 57.424 34.615 12.68 0.00 31.95 5.03
4745 4985 6.968131 TGTGATTCACTTGTGCTCTATTAC 57.032 37.500 17.26 0.00 35.11 1.89
4746 4986 7.278646 GTCATGTGATTCACTTGTGCTCTATTA 59.721 37.037 24.02 6.68 39.49 0.98
4747 4987 6.093219 GTCATGTGATTCACTTGTGCTCTATT 59.907 38.462 24.02 0.00 39.49 1.73
4748 4988 5.583854 GTCATGTGATTCACTTGTGCTCTAT 59.416 40.000 24.02 4.24 39.49 1.98
4749 4989 4.931601 GTCATGTGATTCACTTGTGCTCTA 59.068 41.667 24.02 8.33 39.49 2.43
4750 4990 3.750130 GTCATGTGATTCACTTGTGCTCT 59.250 43.478 24.02 0.00 39.49 4.09
4751 4991 3.424039 CGTCATGTGATTCACTTGTGCTC 60.424 47.826 24.02 15.26 39.49 4.26
4752 4992 2.481568 CGTCATGTGATTCACTTGTGCT 59.518 45.455 24.02 1.39 39.49 4.40
4753 4993 2.480037 TCGTCATGTGATTCACTTGTGC 59.520 45.455 24.02 18.53 39.49 4.57
4754 4994 3.424039 GCTCGTCATGTGATTCACTTGTG 60.424 47.826 24.02 19.22 39.49 3.33
4762 5002 0.745845 GCTGGGCTCGTCATGTGATT 60.746 55.000 0.00 0.00 0.00 2.57
4772 5012 2.657102 GAATCTGGAGGCTGGGCTCG 62.657 65.000 16.02 5.62 0.00 5.03
4793 5033 5.490159 CATGTGGGGTCTTTAAATGCATTT 58.510 37.500 26.72 26.72 0.00 2.32
4861 5101 5.163943 GGTGCGATCTTTGACTTAGAAACTC 60.164 44.000 0.00 0.00 0.00 3.01
4887 5127 5.015515 TGGGCATTGAATTCATGTAAGTGA 58.984 37.500 9.40 0.00 0.00 3.41
4888 5128 5.327616 TGGGCATTGAATTCATGTAAGTG 57.672 39.130 9.40 3.53 0.00 3.16
4889 5129 5.999205 TTGGGCATTGAATTCATGTAAGT 57.001 34.783 9.40 0.00 0.00 2.24
4890 5130 7.042950 TGATTTGGGCATTGAATTCATGTAAG 58.957 34.615 9.40 0.00 0.00 2.34
4902 5148 2.564062 AGTTGACCTGATTTGGGCATTG 59.436 45.455 0.00 0.00 45.85 2.82
4910 5156 5.006386 CCTAGCTTCAAGTTGACCTGATTT 58.994 41.667 4.68 0.00 0.00 2.17
4925 5171 5.263968 TGACATAGTTGTAGCCTAGCTTC 57.736 43.478 0.00 0.00 40.44 3.86
4946 5208 5.125417 TGTTTTCCTCCTGTCTCACTTTTTG 59.875 40.000 0.00 0.00 0.00 2.44
4952 5214 3.503748 CCATTGTTTTCCTCCTGTCTCAC 59.496 47.826 0.00 0.00 0.00 3.51
4953 5215 3.138283 ACCATTGTTTTCCTCCTGTCTCA 59.862 43.478 0.00 0.00 0.00 3.27
4958 5220 3.441572 CAGCTACCATTGTTTTCCTCCTG 59.558 47.826 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.