Multiple sequence alignment - TraesCS3B01G000300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G000300 chr3B 100.000 4348 0 0 1 4348 264011 268358 0.000000e+00 8030.0
1 TraesCS3B01G000300 chr3B 89.600 375 34 5 3972 4343 504522809 504522437 5.580000e-129 472.0
2 TraesCS3B01G000300 chr3B 100.000 193 0 0 4572 4764 268582 268774 1.630000e-94 357.0
3 TraesCS3B01G000300 chr3B 78.386 347 71 4 3402 3746 417375943 417376287 6.210000e-54 222.0
4 TraesCS3B01G000300 chr3A 91.297 1896 106 19 2455 4343 431559 433402 0.000000e+00 2532.0
5 TraesCS3B01G000300 chr3A 89.174 1792 114 34 661 2411 429811 431563 0.000000e+00 2161.0
6 TraesCS3B01G000300 chr3A 91.704 675 52 3 1 672 429117 429790 0.000000e+00 933.0
7 TraesCS3B01G000300 chr3A 92.471 425 27 4 3887 4308 610355 610777 1.900000e-168 603.0
8 TraesCS3B01G000300 chr3A 90.244 410 40 0 2480 2889 606305 606714 1.950000e-148 536.0
9 TraesCS3B01G000300 chr3A 88.561 271 21 3 3758 4024 449297 449561 2.140000e-83 320.0
10 TraesCS3B01G000300 chr3A 91.371 197 12 1 3641 3837 562925 563116 1.020000e-66 265.0
11 TraesCS3B01G000300 chr3A 84.581 227 20 9 2950 3175 448693 448905 1.340000e-50 211.0
12 TraesCS3B01G000300 chr3A 84.000 175 14 4 4586 4760 565150 565310 6.380000e-34 156.0
13 TraesCS3B01G000300 chr3D 92.164 1123 76 6 1856 2968 3336397 3337517 0.000000e+00 1576.0
14 TraesCS3B01G000300 chr3D 91.761 971 56 9 3054 4020 3337577 3338527 0.000000e+00 1328.0
15 TraesCS3B01G000300 chr3D 84.731 799 45 28 559 1341 3335292 3336029 0.000000e+00 728.0
16 TraesCS3B01G000300 chr3D 89.783 460 37 6 6 465 3334838 3335287 8.890000e-162 580.0
17 TraesCS3B01G000300 chr3D 89.071 183 15 4 1572 1751 3336185 3336365 6.210000e-54 222.0
18 TraesCS3B01G000300 chr3D 78.035 346 74 2 3402 3746 304028936 304028592 2.890000e-52 217.0
19 TraesCS3B01G000300 chr4A 90.933 375 29 5 3972 4343 687368398 687368770 2.560000e-137 499.0
20 TraesCS3B01G000300 chr5B 90.667 375 30 5 3972 4343 171317638 171318010 1.190000e-135 494.0
21 TraesCS3B01G000300 chr2B 90.400 375 31 5 3972 4343 203466959 203467331 5.540000e-134 488.0
22 TraesCS3B01G000300 chr2B 96.196 184 6 1 4581 4764 87813639 87813821 2.790000e-77 300.0
23 TraesCS3B01G000300 chr2B 94.118 51 3 0 3940 3990 87813554 87813604 1.420000e-10 78.7
24 TraesCS3B01G000300 chr7B 90.133 375 32 5 3972 4343 694882841 694883213 2.580000e-132 483.0
25 TraesCS3B01G000300 chr6B 89.867 375 33 5 3972 4343 160729435 160729807 1.200000e-130 477.0
26 TraesCS3B01G000300 chr6B 88.380 284 28 5 4063 4343 346222194 346221913 2.120000e-88 337.0
27 TraesCS3B01G000300 chr6B 96.023 176 6 1 4589 4764 265680412 265680238 7.800000e-73 285.0
28 TraesCS3B01G000300 chr1A 96.629 178 5 1 4587 4764 570358547 570358371 1.300000e-75 294.0
29 TraesCS3B01G000300 chr1A 96.078 51 2 0 3940 3990 570358635 570358585 3.060000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G000300 chr3B 264011 268774 4763 False 4193.500000 8030 100.0000 1 4764 2 chr3B.!!$F2 4763
1 TraesCS3B01G000300 chr3A 429117 433402 4285 False 1875.333333 2532 90.7250 1 4343 3 chr3A.!!$F1 4342
2 TraesCS3B01G000300 chr3A 606305 610777 4472 False 569.500000 603 91.3575 2480 4308 2 chr3A.!!$F4 1828
3 TraesCS3B01G000300 chr3A 448693 449561 868 False 265.500000 320 86.5710 2950 4024 2 chr3A.!!$F2 1074
4 TraesCS3B01G000300 chr3A 562925 565310 2385 False 210.500000 265 87.6855 3641 4760 2 chr3A.!!$F3 1119
5 TraesCS3B01G000300 chr3D 3334838 3338527 3689 False 886.800000 1576 89.5020 6 4020 5 chr3D.!!$F1 4014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 536 0.107703 GACATGGCAAGACGATGGGA 60.108 55.000 0.00 0.00 38.71 4.37 F
1016 1069 1.077716 AAATGCCGCACCCTACTCC 60.078 57.895 0.00 0.00 0.00 3.85 F
1889 1992 0.620030 TAGGAAGGCTTGCATGCTGA 59.380 50.000 21.16 6.71 0.00 4.26 F
2268 2387 0.031994 ATGCCGCTTTGGTCAACAAC 59.968 50.000 0.00 0.00 39.19 3.32 F
3232 3806 1.067213 GCAAGGAGACCTGTGAGAGAC 60.067 57.143 0.00 0.00 32.13 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 1850 0.244994 ACCAGCACTGTCTCGTCATC 59.755 55.0 0.00 0.0 0.00 2.92 R
1975 2078 0.817654 GAAAAGGGGCCGATTCCTTG 59.182 55.0 11.34 0.0 42.06 3.61 R
3075 3649 0.031721 GGTCGTATAAGGTCCCTGCG 59.968 60.0 0.00 0.0 0.00 5.18 R
3556 6489 0.034059 CTTTCTCTGCCACGACCACT 59.966 55.0 0.00 0.0 0.00 4.00 R
4729 9348 0.249280 CAACCCTTTGCCGACAAACC 60.249 55.0 0.00 0.0 40.84 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.606604 CCCCGTTCTTCCTTCTCGAA 59.393 55.000 0.00 0.00 0.00 3.71
93 94 5.626809 CGTGTCATTTCCTTCTCCTCCATTA 60.627 44.000 0.00 0.00 0.00 1.90
109 110 2.159085 CCATTAGACGGGTTCTCCACTC 60.159 54.545 0.00 0.00 35.55 3.51
117 118 1.273098 GGGTTCTCCACTCCTGGACTA 60.273 57.143 0.00 0.00 42.15 2.59
215 216 2.257541 ATCCCACCCACCTCTCCGAT 62.258 60.000 0.00 0.00 0.00 4.18
217 218 1.685765 CCACCCACCTCTCCGATCA 60.686 63.158 0.00 0.00 0.00 2.92
339 340 2.086869 TGTCCTTTAGTCGACTACGGG 58.913 52.381 27.37 26.41 40.21 5.28
373 374 1.488393 GCCTACATCCTTGCTCCTTCT 59.512 52.381 0.00 0.00 0.00 2.85
410 411 1.198408 CATGTCTCTGCATTTGCGTGT 59.802 47.619 0.00 0.00 45.83 4.49
414 415 0.798159 CTCTGCATTTGCGTGTGCTA 59.202 50.000 8.22 0.00 45.83 3.49
418 419 2.079925 TGCATTTGCGTGTGCTACATA 58.920 42.857 8.22 0.00 45.83 2.29
427 428 3.489229 GCGTGTGCTACATAGACATGAGA 60.489 47.826 0.00 0.00 38.39 3.27
428 429 4.794329 GCGTGTGCTACATAGACATGAGAT 60.794 45.833 0.00 0.00 38.39 2.75
448 449 0.807496 GCAATGCAAGACTCACTCCC 59.193 55.000 0.00 0.00 0.00 4.30
489 490 7.337689 GGGAGCATGAATATATAGTTGATGCAA 59.662 37.037 20.89 0.00 44.93 4.08
502 503 2.533391 GATGCAAGGCGGAACAGTGC 62.533 60.000 0.00 0.00 35.75 4.40
535 536 0.107703 GACATGGCAAGACGATGGGA 60.108 55.000 0.00 0.00 38.71 4.37
564 565 5.067674 AGCATCACACCAATAATAAATGCGT 59.932 36.000 0.00 0.00 42.24 5.24
582 583 7.994425 AATGCGTCCCATGTATAAATGATTA 57.006 32.000 4.31 0.00 33.49 1.75
646 650 4.684484 AGAGTTAGAGTCGGTTTTTGGT 57.316 40.909 0.00 0.00 0.00 3.67
649 653 2.614983 GTTAGAGTCGGTTTTTGGTGCA 59.385 45.455 0.00 0.00 0.00 4.57
656 660 1.272212 CGGTTTTTGGTGCAGGCTATT 59.728 47.619 0.00 0.00 0.00 1.73
840 888 2.683152 GCAAGAGGAGGATGAGCAATGT 60.683 50.000 0.00 0.00 0.00 2.71
841 889 3.204526 CAAGAGGAGGATGAGCAATGTC 58.795 50.000 0.00 0.00 0.00 3.06
845 893 2.158652 AGGAGGATGAGCAATGTCCATG 60.159 50.000 0.00 0.00 34.42 3.66
846 894 2.422519 GGAGGATGAGCAATGTCCATGT 60.423 50.000 0.00 0.00 34.42 3.21
847 895 2.617308 GAGGATGAGCAATGTCCATGTG 59.383 50.000 0.00 0.00 34.42 3.21
848 896 2.025605 AGGATGAGCAATGTCCATGTGT 60.026 45.455 0.00 0.00 34.42 3.72
849 897 2.098607 GGATGAGCAATGTCCATGTGTG 59.901 50.000 0.00 0.00 32.23 3.82
850 898 2.565046 TGAGCAATGTCCATGTGTGA 57.435 45.000 0.00 0.00 0.00 3.58
851 899 2.429478 TGAGCAATGTCCATGTGTGAG 58.571 47.619 0.00 0.00 0.00 3.51
909 959 4.514577 CTGCCCGCCGTGGACTAG 62.515 72.222 0.00 0.00 42.00 2.57
929 980 1.741401 CACGCATCACCATCACCGT 60.741 57.895 0.00 0.00 0.00 4.83
931 982 1.447663 CGCATCACCATCACCGTCA 60.448 57.895 0.00 0.00 0.00 4.35
932 983 1.695893 CGCATCACCATCACCGTCAC 61.696 60.000 0.00 0.00 0.00 3.67
934 985 1.083806 CATCACCATCACCGTCACCG 61.084 60.000 0.00 0.00 0.00 4.94
1012 1065 2.124901 CCGAAATGCCGCACCCTA 60.125 61.111 0.00 0.00 0.00 3.53
1016 1069 1.077716 AAATGCCGCACCCTACTCC 60.078 57.895 0.00 0.00 0.00 3.85
1358 1411 9.910511 GCAAAAAGCACATATCTGAAATTTATG 57.089 29.630 0.00 0.00 44.79 1.90
1361 1414 9.525409 AAAAGCACATATCTGAAATTTATGAGC 57.475 29.630 10.51 10.51 39.02 4.26
1362 1415 8.461249 AAGCACATATCTGAAATTTATGAGCT 57.539 30.769 13.67 13.67 45.72 4.09
1363 1416 7.872881 AGCACATATCTGAAATTTATGAGCTG 58.127 34.615 16.87 10.30 43.70 4.24
1365 1418 7.082602 CACATATCTGAAATTTATGAGCTGCC 58.917 38.462 0.00 0.00 0.00 4.85
1367 1420 3.872696 TCTGAAATTTATGAGCTGCCGA 58.127 40.909 0.00 0.00 0.00 5.54
1368 1421 3.623060 TCTGAAATTTATGAGCTGCCGAC 59.377 43.478 0.00 0.00 0.00 4.79
1415 1478 3.581024 TGAAATGCAGTCAAATCTGGC 57.419 42.857 0.48 0.00 36.12 4.85
1428 1491 6.948309 AGTCAAATCTGGCTTATTTTACCTGT 59.052 34.615 6.09 0.00 31.83 4.00
1429 1492 7.029563 GTCAAATCTGGCTTATTTTACCTGTG 58.970 38.462 0.00 0.00 0.00 3.66
1453 1516 2.689471 ACTCTTGCTGAACATTTGTGCA 59.311 40.909 0.00 0.00 31.56 4.57
1454 1517 3.130869 ACTCTTGCTGAACATTTGTGCAA 59.869 39.130 6.72 6.72 40.65 4.08
1455 1518 4.114073 CTCTTGCTGAACATTTGTGCAAA 58.886 39.130 7.90 0.00 42.00 3.68
1456 1519 3.864583 TCTTGCTGAACATTTGTGCAAAC 59.135 39.130 7.90 0.00 42.00 2.93
1467 1530 9.632807 GAACATTTGTGCAAACCTAAACATATA 57.367 29.630 0.00 0.00 32.51 0.86
1468 1531 8.980143 ACATTTGTGCAAACCTAAACATATAC 57.020 30.769 0.00 0.00 32.51 1.47
1469 1532 8.580720 ACATTTGTGCAAACCTAAACATATACA 58.419 29.630 0.00 0.00 32.51 2.29
1470 1533 9.075519 CATTTGTGCAAACCTAAACATATACAG 57.924 33.333 0.00 0.00 32.51 2.74
1471 1534 7.987750 TTGTGCAAACCTAAACATATACAGA 57.012 32.000 0.00 0.00 0.00 3.41
1472 1535 7.609760 TGTGCAAACCTAAACATATACAGAG 57.390 36.000 0.00 0.00 0.00 3.35
1473 1536 7.390823 TGTGCAAACCTAAACATATACAGAGA 58.609 34.615 0.00 0.00 0.00 3.10
1534 1597 2.827921 GCTGGACTTTGGGTGATTTGAT 59.172 45.455 0.00 0.00 0.00 2.57
1535 1598 3.259123 GCTGGACTTTGGGTGATTTGATT 59.741 43.478 0.00 0.00 0.00 2.57
1586 1669 4.964897 TGATACAGTTGGATGGATCTGAGT 59.035 41.667 0.98 0.00 40.63 3.41
1639 1725 4.731773 GCTGGTTTGCCATCTAAGATTTCG 60.732 45.833 0.00 0.00 45.05 3.46
1705 1791 5.124457 AGAGAATTTTGATGATGGGTCAACG 59.876 40.000 0.00 0.00 38.01 4.10
1739 1825 6.620877 AGCATCCCGATATGAAGGTATTTA 57.379 37.500 1.62 0.00 0.00 1.40
1741 1827 7.633789 AGCATCCCGATATGAAGGTATTTATT 58.366 34.615 1.62 0.00 0.00 1.40
1742 1828 8.109634 AGCATCCCGATATGAAGGTATTTATTT 58.890 33.333 1.62 0.00 0.00 1.40
1743 1829 8.184192 GCATCCCGATATGAAGGTATTTATTTG 58.816 37.037 1.62 0.00 0.00 2.32
1744 1830 7.681939 TCCCGATATGAAGGTATTTATTTGC 57.318 36.000 0.00 0.00 0.00 3.68
1757 1843 6.197096 GGTATTTATTTGCATTTCTGTCTGCG 59.803 38.462 0.00 0.00 41.32 5.18
1764 1850 2.975851 GCATTTCTGTCTGCGAACTTTG 59.024 45.455 0.00 0.00 0.00 2.77
1765 1851 3.303990 GCATTTCTGTCTGCGAACTTTGA 60.304 43.478 0.00 0.00 0.00 2.69
1766 1852 4.614535 GCATTTCTGTCTGCGAACTTTGAT 60.615 41.667 0.00 0.00 0.00 2.57
1812 1915 1.342082 CTCCGCGTTGTCCAGTTACG 61.342 60.000 4.92 0.00 38.26 3.18
1830 1933 6.017934 CAGTTACGCTCATGCATAGGTTTATT 60.018 38.462 0.00 0.00 39.64 1.40
1831 1934 7.170828 CAGTTACGCTCATGCATAGGTTTATTA 59.829 37.037 0.00 0.00 39.64 0.98
1854 1957 9.646522 ATTAACCTTATTTCTATTGGATGTGCT 57.353 29.630 0.00 0.00 0.00 4.40
1868 1971 3.185188 GGATGTGCTTATGCTGATGTACG 59.815 47.826 1.96 0.00 40.48 3.67
1878 1981 2.035961 TGCTGATGTACGATAGGAAGGC 59.964 50.000 0.00 0.00 43.77 4.35
1889 1992 0.620030 TAGGAAGGCTTGCATGCTGA 59.380 50.000 21.16 6.71 0.00 4.26
1955 2058 7.823745 ATGGCCTCTAATTAAATGTTACTGG 57.176 36.000 3.32 0.00 0.00 4.00
1975 2078 2.937149 GGTTCGCTAGGAAAATCCACTC 59.063 50.000 0.00 0.00 39.61 3.51
2015 2118 4.924625 TCTCCAGGAGGTACATATCTAGC 58.075 47.826 17.10 0.00 35.89 3.42
2116 2221 4.832266 CCTACAAGGAGCTCTGATATCAGT 59.168 45.833 27.80 12.61 40.41 3.41
2120 2225 4.935352 AGGAGCTCTGATATCAGTGAAC 57.065 45.455 29.95 22.36 44.12 3.18
2121 2226 3.640967 AGGAGCTCTGATATCAGTGAACC 59.359 47.826 29.95 27.51 44.12 3.62
2129 2234 3.843619 TGATATCAGTGAACCCCTTGACA 59.156 43.478 0.00 0.00 0.00 3.58
2199 2310 2.159476 CCCTCGTGTGATGCAATTTCTG 60.159 50.000 0.00 0.00 0.00 3.02
2268 2387 0.031994 ATGCCGCTTTGGTCAACAAC 59.968 50.000 0.00 0.00 39.19 3.32
2417 2536 9.712305 GTTTGCCTTCATATTCTCTAGCTATAA 57.288 33.333 0.00 0.00 0.00 0.98
2445 2564 7.159372 GGTATGTACCATCCTGTAAAGTATGG 58.841 42.308 2.96 2.96 45.73 2.74
2448 2567 5.962031 TGTACCATCCTGTAAAGTATGGACT 59.038 40.000 11.37 0.00 41.20 3.85
2450 2569 4.099573 ACCATCCTGTAAAGTATGGACTCG 59.900 45.833 11.37 0.00 41.20 4.18
2511 2630 4.621034 CGTTCTGTCATTTTGCCCATAAAC 59.379 41.667 0.00 0.00 0.00 2.01
2641 2761 2.610438 ACCATGATGGAGCAAAACCT 57.390 45.000 20.11 0.00 40.96 3.50
2701 2821 3.627577 CCGAGGGATGGTTTATGAAACTG 59.372 47.826 2.39 0.00 41.14 3.16
2728 2848 5.130292 AGGCAGATCAGAATTTTGTTGTG 57.870 39.130 0.00 0.00 0.00 3.33
2730 2850 5.302568 AGGCAGATCAGAATTTTGTTGTGAA 59.697 36.000 7.99 0.00 0.00 3.18
2737 2857 5.048782 TCAGAATTTTGTTGTGAAGGATCCG 60.049 40.000 5.98 0.00 0.00 4.18
2746 2866 1.205893 GTGAAGGATCCGAACAGAGCT 59.794 52.381 5.98 0.00 0.00 4.09
2749 2869 1.786937 AGGATCCGAACAGAGCTCAT 58.213 50.000 17.77 0.00 0.00 2.90
2750 2870 2.114616 AGGATCCGAACAGAGCTCATT 58.885 47.619 17.77 9.85 0.00 2.57
2758 2878 4.092091 CCGAACAGAGCTCATTTGTTCTAC 59.908 45.833 29.62 15.27 45.20 2.59
2764 2884 2.040278 AGCTCATTTGTTCTACCTGCCA 59.960 45.455 0.00 0.00 0.00 4.92
2776 2896 1.446792 CCTGCCATATAGCGCTCGG 60.447 63.158 16.34 12.23 34.65 4.63
2822 2942 3.430929 GCCTGGATCAAATACACTCGACT 60.431 47.826 0.00 0.00 0.00 4.18
2979 3099 8.937634 ATTTGAATCTTTGAGTAATCATTGGC 57.062 30.769 0.00 0.00 0.00 4.52
3145 3719 2.080286 TCAAAGCTCTCTGTAACGCC 57.920 50.000 0.00 0.00 0.00 5.68
3181 3755 2.280628 GTTTTCATCCGCGGAAGAGAT 58.719 47.619 34.66 13.09 0.00 2.75
3202 3776 4.927267 TGTGTCCCTTCCAGAAACATAT 57.073 40.909 0.00 0.00 0.00 1.78
3203 3777 6.386927 AGATGTGTCCCTTCCAGAAACATATA 59.613 38.462 0.00 0.00 41.32 0.86
3232 3806 1.067213 GCAAGGAGACCTGTGAGAGAC 60.067 57.143 0.00 0.00 32.13 3.36
3271 3845 1.202114 GCAGAGAGATCTATCCTGGCG 59.798 57.143 13.71 0.00 0.00 5.69
3379 6312 1.384222 GGATCCCACGCCAAATCACC 61.384 60.000 0.00 0.00 0.00 4.02
3514 6447 1.324736 GTGATCATCGCCGACAACTTC 59.675 52.381 0.00 0.00 0.00 3.01
3534 6467 4.395583 GCTCCCGTTCGACGACGT 62.396 66.667 0.00 0.00 46.05 4.34
3541 6474 1.464687 CCGTTCGACGACGTACTTGAT 60.465 52.381 13.90 0.00 46.05 2.57
3556 6489 0.034198 TTGATTGGACCGCGTTCTCA 59.966 50.000 4.92 0.00 0.00 3.27
3715 6648 3.181471 ACGACATCTTCCACATGATCCTC 60.181 47.826 0.00 0.00 0.00 3.71
3739 6681 2.561037 GGTTTGGTTCAGCCGGGTG 61.561 63.158 27.73 27.73 41.21 4.61
3740 6682 1.527380 GTTTGGTTCAGCCGGGTGA 60.527 57.895 31.67 31.67 41.21 4.02
3743 6685 0.608035 TTGGTTCAGCCGGGTGAATC 60.608 55.000 41.90 40.92 38.68 2.52
3744 6686 1.002624 GGTTCAGCCGGGTGAATCA 60.003 57.895 40.94 24.94 37.48 2.57
3745 6687 0.394352 GGTTCAGCCGGGTGAATCAT 60.394 55.000 40.94 0.00 37.48 2.45
3746 6688 1.134220 GGTTCAGCCGGGTGAATCATA 60.134 52.381 40.94 24.25 37.48 2.15
3747 6689 2.487265 GGTTCAGCCGGGTGAATCATAT 60.487 50.000 40.94 0.00 37.48 1.78
3748 6690 2.808543 GTTCAGCCGGGTGAATCATATC 59.191 50.000 41.90 27.96 38.68 1.63
3750 6692 2.037641 TCAGCCGGGTGAATCATATCAG 59.962 50.000 33.02 3.17 0.00 2.90
3751 6693 1.349026 AGCCGGGTGAATCATATCAGG 59.651 52.381 4.72 0.00 0.00 3.86
3837 6856 2.685897 CGGTCTCTAGTCTGAAGGAAGG 59.314 54.545 0.00 0.00 0.00 3.46
3959 7187 0.600557 ACAGAGTTGAGCTCCTGACG 59.399 55.000 20.39 4.97 45.21 4.35
4035 7267 5.719085 ACAGAGACAGAGACATATGACCTTT 59.281 40.000 10.38 0.00 0.00 3.11
4120 7352 9.651913 ATTAGCTCTAAAGTTTCTCTCTTTCAG 57.348 33.333 0.00 0.00 36.65 3.02
4225 7471 6.698766 ACTCTTGATTGCACATTTTGTTCTTC 59.301 34.615 0.00 0.00 0.00 2.87
4229 7475 7.236674 TGATTGCACATTTTGTTCTTCAAAG 57.763 32.000 0.00 0.00 45.14 2.77
4248 7495 6.240894 TCAAAGAGGAAGTATTGATTGCACT 58.759 36.000 0.00 0.00 0.00 4.40
4258 7506 2.132740 TGATTGCACTTTTTGGCGTC 57.867 45.000 0.00 0.00 0.00 5.19
4266 7515 2.781646 CACTTTTTGGCGTCGAAACTTC 59.218 45.455 0.83 0.00 0.00 3.01
4278 7527 5.679906 CGTCGAAACTTCAGATGAATGTTT 58.320 37.500 16.19 16.19 37.70 2.83
4299 7549 7.912383 TGTTTAACAGTTTGTAGTAGCTTGTC 58.088 34.615 0.00 0.00 0.00 3.18
4300 7550 7.549842 TGTTTAACAGTTTGTAGTAGCTTGTCA 59.450 33.333 0.00 0.00 0.00 3.58
4623 9242 8.778141 TGTTCTATCGTAGATTACAATTCGAC 57.222 34.615 0.00 0.00 45.12 4.20
4635 9254 2.287915 ACAATTCGACTGAGCACAACAC 59.712 45.455 0.78 0.00 0.00 3.32
4636 9255 2.238942 ATTCGACTGAGCACAACACA 57.761 45.000 0.00 0.00 0.00 3.72
4695 9314 9.803315 GGAGTAGATTTGTTTTCTTCTGTTTTT 57.197 29.630 0.00 0.00 0.00 1.94
4706 9325 8.699749 GTTTTCTTCTGTTTTTGTATACATGGC 58.300 33.333 6.36 0.00 0.00 4.40
4708 9327 8.856153 TTCTTCTGTTTTTGTATACATGGCTA 57.144 30.769 6.36 0.00 0.00 3.93
4760 9379 3.430453 CAAAGGGTTGAAGGATTAGCCA 58.570 45.455 0.00 0.00 36.52 4.75
4761 9380 4.026052 CAAAGGGTTGAAGGATTAGCCAT 58.974 43.478 0.00 0.00 36.52 4.40
4762 9381 4.337264 AAGGGTTGAAGGATTAGCCATT 57.663 40.909 0.00 0.00 40.02 3.16
4763 9382 5.466127 AAGGGTTGAAGGATTAGCCATTA 57.534 39.130 0.00 0.00 40.02 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.268589 CGCTAGCGATTCGAGAAGGAA 60.269 52.381 32.98 0.00 42.83 3.36
40 41 0.459899 TGTTCATCCACGCTAGCGAT 59.540 50.000 41.33 22.95 42.83 4.58
93 94 0.900647 CAGGAGTGGAGAACCCGTCT 60.901 60.000 0.00 0.00 40.25 4.18
109 110 1.901085 GGTGCTGAGGTAGTCCAGG 59.099 63.158 0.00 0.00 35.89 4.45
215 216 2.225522 TGGTAGTGAGGGAATGAGGTGA 60.226 50.000 0.00 0.00 0.00 4.02
217 218 2.188817 GTGGTAGTGAGGGAATGAGGT 58.811 52.381 0.00 0.00 0.00 3.85
319 320 2.086869 CCCGTAGTCGACTAAAGGACA 58.913 52.381 33.05 12.58 39.71 4.02
320 321 2.359900 TCCCGTAGTCGACTAAAGGAC 58.640 52.381 33.05 21.73 39.71 3.85
339 340 1.210478 TGTAGGCATGGAGGAGCTTTC 59.790 52.381 0.00 0.00 0.00 2.62
373 374 3.621558 ACATGATACACTCTCGGTCTCA 58.378 45.455 0.00 0.00 0.00 3.27
410 411 4.942761 TGCATCTCATGTCTATGTAGCA 57.057 40.909 0.00 0.00 35.73 3.49
414 415 4.457466 TGCATTGCATCTCATGTCTATGT 58.543 39.130 7.38 0.00 32.77 2.29
418 419 3.377485 GTCTTGCATTGCATCTCATGTCT 59.623 43.478 12.95 0.00 38.76 3.41
427 428 2.089980 GGAGTGAGTCTTGCATTGCAT 58.910 47.619 12.95 0.00 38.76 3.96
428 429 1.527034 GGAGTGAGTCTTGCATTGCA 58.473 50.000 7.38 7.38 36.47 4.08
448 449 1.950828 CTCCCACTGATGCTAGCAAG 58.049 55.000 23.54 17.96 0.00 4.01
489 490 2.345244 CTGAGCACTGTTCCGCCT 59.655 61.111 0.00 0.00 0.00 5.52
502 503 0.165295 CATGTCGTGTTGCTGCTGAG 59.835 55.000 0.00 0.00 0.00 3.35
599 603 5.313712 CAATGGCCCGGTTTATCTTATACT 58.686 41.667 0.00 0.00 0.00 2.12
601 605 4.076394 GCAATGGCCCGGTTTATCTTATA 58.924 43.478 0.00 0.00 0.00 0.98
605 609 0.033601 TGCAATGGCCCGGTTTATCT 60.034 50.000 0.00 0.00 40.13 1.98
613 617 0.734889 CTAACTCTTGCAATGGCCCG 59.265 55.000 0.00 0.00 40.13 6.13
646 650 4.089408 TCAGCATTATGAATAGCCTGCA 57.911 40.909 0.00 0.00 32.18 4.41
649 653 6.012683 AGGATCTTCAGCATTATGAATAGCCT 60.013 38.462 5.99 5.99 43.39 4.58
688 723 6.988522 TCATATCTTGGATCCGTCGATTTTA 58.011 36.000 7.39 0.00 0.00 1.52
804 852 8.204836 TCCTCCTCTTGCAAGAATTATTACTAC 58.795 37.037 28.16 0.00 34.03 2.73
848 896 2.603473 CCCCCGGTGACACTCTCA 60.603 66.667 5.39 0.00 0.00 3.27
849 897 4.083862 GCCCCCGGTGACACTCTC 62.084 72.222 5.39 0.00 0.00 3.20
850 898 4.954118 TGCCCCCGGTGACACTCT 62.954 66.667 5.39 0.00 0.00 3.24
851 899 2.764637 ATTTGCCCCCGGTGACACTC 62.765 60.000 5.39 0.00 0.00 3.51
909 959 2.764314 GGTGATGGTGATGCGTGGC 61.764 63.158 0.00 0.00 0.00 5.01
942 993 1.153549 GGAGTTGAGTGCTAGCGGG 60.154 63.158 10.77 0.00 0.00 6.13
943 994 1.517257 CGGAGTTGAGTGCTAGCGG 60.517 63.158 10.77 0.00 0.00 5.52
944 995 2.161486 GCGGAGTTGAGTGCTAGCG 61.161 63.158 10.77 0.00 0.00 4.26
945 996 1.811679 GGCGGAGTTGAGTGCTAGC 60.812 63.158 8.10 8.10 0.00 3.42
946 997 0.179124 GAGGCGGAGTTGAGTGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
947 998 1.605058 GGAGGCGGAGTTGAGTGCTA 61.605 60.000 0.00 0.00 0.00 3.49
948 999 2.659610 GAGGCGGAGTTGAGTGCT 59.340 61.111 0.00 0.00 0.00 4.40
949 1000 2.435059 GGAGGCGGAGTTGAGTGC 60.435 66.667 0.00 0.00 0.00 4.40
950 1001 2.125912 CGGAGGCGGAGTTGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
951 1002 4.070552 GCGGAGGCGGAGTTGAGT 62.071 66.667 0.00 0.00 0.00 3.41
1251 1304 1.574526 CCTTGGCATTGAGGGGAGGA 61.575 60.000 0.00 0.00 0.00 3.71
1288 1341 4.346129 GAGCACAAAATTAATCTCTGCGG 58.654 43.478 0.00 0.00 0.00 5.69
1374 1431 1.352156 CCGAGAACAGTAACGGCAGC 61.352 60.000 0.00 0.00 38.98 5.25
1415 1478 8.230486 CAGCAAGAGTTACACAGGTAAAATAAG 58.770 37.037 0.00 0.00 40.95 1.73
1428 1491 5.733091 GCACAAATGTTCAGCAAGAGTTACA 60.733 40.000 0.00 0.00 0.00 2.41
1429 1492 4.676924 GCACAAATGTTCAGCAAGAGTTAC 59.323 41.667 0.00 0.00 0.00 2.50
1467 1530 8.045507 TCAGCTCATGATTAAGAATTTCTCTGT 58.954 33.333 0.00 0.00 30.49 3.41
1468 1531 8.434733 TCAGCTCATGATTAAGAATTTCTCTG 57.565 34.615 0.00 0.00 30.49 3.35
1469 1532 9.458727 TTTCAGCTCATGATTAAGAATTTCTCT 57.541 29.630 0.00 0.00 37.89 3.10
1472 1535 8.753175 GCATTTCAGCTCATGATTAAGAATTTC 58.247 33.333 0.00 0.00 37.89 2.17
1473 1536 8.255206 TGCATTTCAGCTCATGATTAAGAATTT 58.745 29.630 0.00 0.00 37.89 1.82
1477 1540 6.373186 CTGCATTTCAGCTCATGATTAAGA 57.627 37.500 0.00 0.00 37.89 2.10
1534 1597 8.040002 TCACCTATCCCACATATATGTTCAAA 57.960 34.615 15.85 2.93 39.39 2.69
1535 1598 7.625498 TCACCTATCCCACATATATGTTCAA 57.375 36.000 15.85 4.65 39.39 2.69
1639 1725 4.759205 AACATGGAAGGGGCCGGC 62.759 66.667 21.18 21.18 0.00 6.13
1705 1791 2.506472 GGATGCTCGGGTTCCTCC 59.494 66.667 0.00 0.00 0.00 4.30
1739 1825 3.254166 AGTTCGCAGACAGAAATGCAAAT 59.746 39.130 0.00 0.00 42.68 2.32
1741 1827 2.221169 AGTTCGCAGACAGAAATGCAA 58.779 42.857 0.00 0.00 42.68 4.08
1742 1828 1.882912 AGTTCGCAGACAGAAATGCA 58.117 45.000 0.00 0.00 42.68 3.96
1743 1829 2.975851 CAAAGTTCGCAGACAGAAATGC 59.024 45.455 0.00 0.00 39.09 3.56
1744 1830 4.472691 TCAAAGTTCGCAGACAGAAATG 57.527 40.909 0.00 0.00 34.32 2.32
1751 1837 2.058798 TCGTCATCAAAGTTCGCAGAC 58.941 47.619 0.00 0.00 34.32 3.51
1757 1843 3.120854 GCACTGTCTCGTCATCAAAGTTC 60.121 47.826 0.00 0.00 0.00 3.01
1764 1850 0.244994 ACCAGCACTGTCTCGTCATC 59.755 55.000 0.00 0.00 0.00 2.92
1765 1851 0.681733 AACCAGCACTGTCTCGTCAT 59.318 50.000 0.00 0.00 0.00 3.06
1766 1852 0.464036 AAACCAGCACTGTCTCGTCA 59.536 50.000 0.00 0.00 0.00 4.35
1831 1934 7.961326 AAGCACATCCAATAGAAATAAGGTT 57.039 32.000 0.00 0.00 0.00 3.50
1835 1938 8.570488 CAGCATAAGCACATCCAATAGAAATAA 58.430 33.333 0.00 0.00 45.49 1.40
1840 1943 5.294734 TCAGCATAAGCACATCCAATAGA 57.705 39.130 0.00 0.00 45.49 1.98
1843 1946 4.212716 ACATCAGCATAAGCACATCCAAT 58.787 39.130 0.00 0.00 45.49 3.16
1850 1953 4.623167 CCTATCGTACATCAGCATAAGCAC 59.377 45.833 0.00 0.00 45.49 4.40
1852 1955 5.060662 TCCTATCGTACATCAGCATAAGC 57.939 43.478 0.00 0.00 42.56 3.09
1854 1957 5.566826 GCCTTCCTATCGTACATCAGCATAA 60.567 44.000 0.00 0.00 0.00 1.90
1868 1971 1.607628 CAGCATGCAAGCCTTCCTATC 59.392 52.381 21.98 0.00 34.23 2.08
1878 1981 3.777465 AAACATAGCTCAGCATGCAAG 57.223 42.857 21.98 17.39 34.76 4.01
1933 2036 7.466860 CGAACCAGTAACATTTAATTAGAGGCC 60.467 40.741 0.00 0.00 0.00 5.19
1947 2050 4.339872 TTTTCCTAGCGAACCAGTAACA 57.660 40.909 0.00 0.00 0.00 2.41
1955 2058 3.596214 TGAGTGGATTTTCCTAGCGAAC 58.404 45.455 0.00 0.00 37.46 3.95
1975 2078 0.817654 GAAAAGGGGCCGATTCCTTG 59.182 55.000 11.34 0.00 42.06 3.61
2063 2168 5.025453 ACTGGAAATGGGCTTCACAATTAT 58.975 37.500 0.00 0.00 0.00 1.28
2064 2169 4.220382 CACTGGAAATGGGCTTCACAATTA 59.780 41.667 0.00 0.00 0.00 1.40
2104 2209 4.406972 TCAAGGGGTTCACTGATATCAGAG 59.593 45.833 34.16 27.21 46.59 3.35
2110 2215 3.907474 TCTTGTCAAGGGGTTCACTGATA 59.093 43.478 12.66 0.00 0.00 2.15
2111 2216 2.711009 TCTTGTCAAGGGGTTCACTGAT 59.289 45.455 12.66 0.00 0.00 2.90
2116 2221 1.142870 CCACTCTTGTCAAGGGGTTCA 59.857 52.381 16.88 0.00 31.51 3.18
2120 2225 2.656947 TTTCCACTCTTGTCAAGGGG 57.343 50.000 16.88 13.34 31.51 4.79
2121 2226 2.229784 GCATTTCCACTCTTGTCAAGGG 59.770 50.000 11.11 11.11 34.26 3.95
2129 2234 2.154462 CGGTTCTGCATTTCCACTCTT 58.846 47.619 0.00 0.00 0.00 2.85
2199 2310 2.866762 GTTGACTCCAGATGCCGAATAC 59.133 50.000 0.00 0.00 0.00 1.89
2268 2387 5.233902 GCATATATAAGCTCTTCATCTGCCG 59.766 44.000 2.71 0.00 0.00 5.69
2386 2505 3.696051 GAGAATATGAAGGCAAACCAGCA 59.304 43.478 0.00 0.00 39.06 4.41
2431 2550 3.362706 AGCGAGTCCATACTTTACAGGA 58.637 45.455 0.00 0.00 35.56 3.86
2445 2564 2.423892 TGGACAGTTAGATGAGCGAGTC 59.576 50.000 0.00 0.00 0.00 3.36
2448 2567 2.447443 ACTGGACAGTTAGATGAGCGA 58.553 47.619 0.00 0.00 38.83 4.93
2560 2680 7.661536 ACTCCTACAAGCATAAGTTGATAGA 57.338 36.000 0.00 0.00 0.00 1.98
2563 2683 8.486210 TCATAACTCCTACAAGCATAAGTTGAT 58.514 33.333 0.00 0.00 0.00 2.57
2641 2761 8.796475 CCTTTCAACTCTGGAGAATGAAAAATA 58.204 33.333 22.49 11.31 41.79 1.40
2677 2797 4.018779 AGTTTCATAAACCATCCCTCGGAA 60.019 41.667 0.00 0.00 42.34 4.30
2701 2821 4.643784 ACAAAATTCTGATCTGCCTCCATC 59.356 41.667 0.00 0.00 0.00 3.51
2728 2848 1.478510 TGAGCTCTGTTCGGATCCTTC 59.521 52.381 16.19 0.48 0.00 3.46
2730 2850 1.786937 ATGAGCTCTGTTCGGATCCT 58.213 50.000 16.19 0.00 0.00 3.24
2737 2857 5.121454 CAGGTAGAACAAATGAGCTCTGTTC 59.879 44.000 27.53 27.53 46.02 3.18
2746 2866 5.997746 GCTATATGGCAGGTAGAACAAATGA 59.002 40.000 6.13 0.00 0.00 2.57
2749 2869 4.377021 CGCTATATGGCAGGTAGAACAAA 58.623 43.478 11.93 0.00 0.00 2.83
2750 2870 3.802329 GCGCTATATGGCAGGTAGAACAA 60.802 47.826 11.93 0.00 0.00 2.83
2758 2878 1.446792 CCGAGCGCTATATGGCAGG 60.447 63.158 11.50 4.88 0.00 4.85
2776 2896 4.518211 ACATAAAGATTATGCTCCAGCTGC 59.482 41.667 8.66 0.00 42.66 5.25
2822 2942 7.667043 AGTTTTTCACAAATATAGACAGCGA 57.333 32.000 0.00 0.00 0.00 4.93
2979 3099 5.214417 CACAGTGTACAATTTGTGTCATGG 58.786 41.667 20.15 9.41 41.98 3.66
3075 3649 0.031721 GGTCGTATAAGGTCCCTGCG 59.968 60.000 0.00 0.00 0.00 5.18
3145 3719 2.770164 AAACCCCTTCTGAGACATCG 57.230 50.000 0.00 0.00 0.00 3.84
3181 3755 4.927267 ATATGTTTCTGGAAGGGACACA 57.073 40.909 0.00 0.00 33.35 3.72
3202 3776 3.445008 AGGTCTCCTTGCAGACTTGATA 58.555 45.455 4.09 0.00 42.31 2.15
3203 3777 2.264455 AGGTCTCCTTGCAGACTTGAT 58.736 47.619 4.09 0.00 42.31 2.57
3232 3806 2.753966 CGCTGGCTTTCCACCGATG 61.754 63.158 0.00 0.00 42.55 3.84
3271 3845 0.108945 GCATCTGCCCTGCAAAGAAC 60.109 55.000 0.00 0.00 38.41 3.01
3349 4904 1.621814 CGTGGGATCCGGGTGTATATT 59.378 52.381 5.45 0.00 0.00 1.28
3379 6312 1.961277 GGCATAGTTCATCCGCCGG 60.961 63.158 0.00 0.00 32.14 6.13
3433 6366 0.611200 TGTTCACCTCGTACCCCATG 59.389 55.000 0.00 0.00 0.00 3.66
3490 6423 3.144871 TCGGCGATGATCACCGGT 61.145 61.111 20.32 0.00 41.98 5.28
3514 6447 4.394078 TCGTCGAACGGGAGCACG 62.394 66.667 0.00 0.00 42.81 5.34
3534 6467 1.274167 AGAACGCGGTCCAATCAAGTA 59.726 47.619 22.82 0.00 0.00 2.24
3541 6474 1.300620 CACTGAGAACGCGGTCCAA 60.301 57.895 22.82 8.54 0.00 3.53
3556 6489 0.034059 CTTTCTCTGCCACGACCACT 59.966 55.000 0.00 0.00 0.00 4.00
3562 6495 2.271800 GGTACATCTTTCTCTGCCACG 58.728 52.381 0.00 0.00 0.00 4.94
3605 6538 0.256752 TACCTGTTCTCCGGGATCGA 59.743 55.000 0.00 0.00 42.95 3.59
3715 6648 1.515521 GGCTGAACCAAACCGAGTGG 61.516 60.000 0.00 0.00 42.28 4.00
3739 6681 4.202441 ACTTGGTGCACCTGATATGATTC 58.798 43.478 34.75 5.91 36.82 2.52
3740 6682 4.240881 ACTTGGTGCACCTGATATGATT 57.759 40.909 34.75 8.71 36.82 2.57
3743 6685 4.375272 CTCTACTTGGTGCACCTGATATG 58.625 47.826 34.75 19.12 36.82 1.78
3744 6686 3.181461 GCTCTACTTGGTGCACCTGATAT 60.181 47.826 34.75 18.41 36.82 1.63
3745 6687 2.168521 GCTCTACTTGGTGCACCTGATA 59.831 50.000 34.75 21.74 36.82 2.15
3746 6688 1.065854 GCTCTACTTGGTGCACCTGAT 60.066 52.381 34.75 21.78 36.82 2.90
3747 6689 0.321671 GCTCTACTTGGTGCACCTGA 59.678 55.000 34.75 22.33 36.82 3.86
3748 6690 0.035317 TGCTCTACTTGGTGCACCTG 59.965 55.000 34.75 27.64 36.82 4.00
3750 6692 0.035458 ACTGCTCTACTTGGTGCACC 59.965 55.000 29.67 29.67 0.00 5.01
3751 6693 2.611518 CTACTGCTCTACTTGGTGCAC 58.388 52.381 8.80 8.80 0.00 4.57
3837 6856 4.640647 GGTTACATCACCTCCTTCCATTTC 59.359 45.833 0.00 0.00 33.50 2.17
3865 7079 6.864360 AGAATACTACTGGTGTCTATCGAC 57.136 41.667 0.00 0.00 40.64 4.20
3892 7110 3.118223 GGCAAAGGATAGCTCAGGTTACT 60.118 47.826 0.00 0.00 0.00 2.24
3959 7187 2.683968 TCTGTCGCCACATTCAGTAAC 58.316 47.619 0.00 0.00 0.00 2.50
4120 7352 2.663196 CGGTCCCTTGTCTCACCC 59.337 66.667 0.00 0.00 0.00 4.61
4225 7471 6.506500 AGTGCAATCAATACTTCCTCTTTG 57.493 37.500 0.00 0.00 0.00 2.77
4229 7475 6.587608 CCAAAAAGTGCAATCAATACTTCCTC 59.412 38.462 0.00 0.00 33.82 3.71
4248 7495 2.678836 TCTGAAGTTTCGACGCCAAAAA 59.321 40.909 0.00 0.00 0.00 1.94
4258 7506 8.070171 ACTGTTAAACATTCATCTGAAGTTTCG 58.930 33.333 16.54 10.59 37.04 3.46
4278 7527 7.046292 TCTGACAAGCTACTACAAACTGTTA 57.954 36.000 0.00 0.00 0.00 2.41
4299 7549 7.397892 TCTTCACCTAGTCTAATCACTTCTG 57.602 40.000 0.00 0.00 0.00 3.02
4300 7550 8.058847 AGATCTTCACCTAGTCTAATCACTTCT 58.941 37.037 0.00 0.00 0.00 2.85
4598 9217 8.618677 AGTCGAATTGTAATCTACGATAGAACA 58.381 33.333 0.00 0.00 38.50 3.18
4606 9225 5.034797 TGCTCAGTCGAATTGTAATCTACG 58.965 41.667 0.00 0.00 0.00 3.51
4620 9239 2.977700 ACTGTGTTGTGCTCAGTCG 58.022 52.632 0.00 0.00 45.53 4.18
4623 9242 1.600957 CCTGAACTGTGTTGTGCTCAG 59.399 52.381 0.00 0.00 42.58 3.35
4680 9299 8.699749 GCCATGTATACAAAAACAGAAGAAAAC 58.300 33.333 10.14 0.00 0.00 2.43
4720 9339 3.594603 TGCCGACAAACCAAAAGAAAA 57.405 38.095 0.00 0.00 0.00 2.29
4721 9340 3.594603 TTGCCGACAAACCAAAAGAAA 57.405 38.095 0.00 0.00 31.21 2.52
4722 9341 3.516615 CTTTGCCGACAAACCAAAAGAA 58.483 40.909 0.00 0.00 40.84 2.52
4723 9342 2.159170 CCTTTGCCGACAAACCAAAAGA 60.159 45.455 0.00 0.00 40.84 2.52
4724 9343 2.200899 CCTTTGCCGACAAACCAAAAG 58.799 47.619 0.00 0.00 40.84 2.27
4725 9344 1.134670 CCCTTTGCCGACAAACCAAAA 60.135 47.619 0.00 0.00 40.84 2.44
4726 9345 0.461961 CCCTTTGCCGACAAACCAAA 59.538 50.000 0.00 0.00 40.84 3.28
4727 9346 0.684805 ACCCTTTGCCGACAAACCAA 60.685 50.000 0.00 0.00 40.84 3.67
4728 9347 0.684805 AACCCTTTGCCGACAAACCA 60.685 50.000 0.00 0.00 40.84 3.67
4729 9348 0.249280 CAACCCTTTGCCGACAAACC 60.249 55.000 0.00 0.00 40.84 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.