Multiple sequence alignment - TraesCS3A01G537700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G537700 chr3A 100.000 3922 0 0 1 3922 749280810 749284731 0.000000e+00 7243.0
1 TraesCS3A01G537700 chr3A 97.436 468 12 0 1753 2220 741366506 741366039 0.000000e+00 798.0
2 TraesCS3A01G537700 chr3A 80.781 333 48 15 1717 2044 71794373 71794694 3.030000e-61 246.0
3 TraesCS3A01G537700 chr3B 88.552 1651 94 47 1079 2683 822832244 822833845 0.000000e+00 1914.0
4 TraesCS3A01G537700 chr3B 88.072 830 68 14 3040 3847 822834303 822835123 0.000000e+00 955.0
5 TraesCS3A01G537700 chr3B 81.873 331 48 11 1717 2044 101799729 101800050 6.460000e-68 268.0
6 TraesCS3A01G537700 chr3B 86.307 241 16 9 107 331 822828835 822829074 3.030000e-61 246.0
7 TraesCS3A01G537700 chr3B 85.714 126 9 6 634 752 822831877 822832000 1.480000e-24 124.0
8 TraesCS3A01G537700 chr3B 97.872 47 0 1 3877 3922 822835124 822835170 3.250000e-11 80.5
9 TraesCS3A01G537700 chr3B 100.000 29 0 0 3106 3134 693600322 693600350 2.000000e-03 54.7
10 TraesCS3A01G537700 chr3D 91.129 372 26 7 114 485 613622289 613622653 7.570000e-137 497.0
11 TraesCS3A01G537700 chr3D 83.140 605 42 17 2704 3277 613624764 613625339 7.570000e-137 497.0
12 TraesCS3A01G537700 chr3D 87.004 454 38 7 3281 3727 613625526 613625965 3.520000e-135 492.0
13 TraesCS3A01G537700 chr3D 93.798 258 4 8 2455 2703 613624461 613624715 1.030000e-100 377.0
14 TraesCS3A01G537700 chr3D 81.858 452 32 18 2017 2463 613624024 613624430 6.280000e-88 335.0
15 TraesCS3A01G537700 chr3D 81.571 331 49 11 1717 2044 63007294 63007615 3.010000e-66 263.0
16 TraesCS3A01G537700 chr3D 80.405 296 36 14 788 1080 613623661 613623937 5.140000e-49 206.0
17 TraesCS3A01G537700 chr3D 91.667 108 8 1 3719 3825 613627629 613627736 8.780000e-32 148.0
18 TraesCS3A01G537700 chr3D 100.000 29 0 0 1 29 613622208 613622236 2.000000e-03 54.7
19 TraesCS3A01G537700 chr1B 85.411 377 46 8 1696 2069 83640103 83639733 2.210000e-102 383.0
20 TraesCS3A01G537700 chr1A 85.411 377 46 8 1696 2069 52237572 52237202 2.210000e-102 383.0
21 TraesCS3A01G537700 chr1A 93.878 49 3 0 502 550 515768927 515768879 1.510000e-09 75.0
22 TraesCS3A01G537700 chr1D 85.146 377 47 8 1696 2069 52576397 52576027 1.030000e-100 377.0
23 TraesCS3A01G537700 chr7B 88.485 165 16 1 2463 2624 701477516 701477680 3.090000e-46 196.0
24 TraesCS3A01G537700 chr5A 98.077 52 1 0 499 550 380789936 380789987 1.500000e-14 91.6
25 TraesCS3A01G537700 chr5A 98.000 50 1 0 2482 2531 66001787 66001738 1.940000e-13 87.9
26 TraesCS3A01G537700 chr5A 95.918 49 2 0 502 550 536285084 536285132 3.250000e-11 80.5
27 TraesCS3A01G537700 chr5A 94.231 52 3 0 499 550 688912618 688912669 3.250000e-11 80.5
28 TraesCS3A01G537700 chr5A 92.593 54 3 1 2482 2534 66049864 66049811 4.200000e-10 76.8
29 TraesCS3A01G537700 chr2A 96.226 53 2 0 502 554 104878215 104878267 1.940000e-13 87.9
30 TraesCS3A01G537700 chr2A 90.909 55 4 1 499 553 28677319 28677372 5.440000e-09 73.1
31 TraesCS3A01G537700 chr4A 94.444 54 2 1 2482 2534 493310038 493309985 9.030000e-12 82.4
32 TraesCS3A01G537700 chr4A 87.755 49 4 2 1198 1245 584939314 584939267 5.470000e-04 56.5
33 TraesCS3A01G537700 chr7A 95.918 49 2 0 502 550 643222383 643222335 3.250000e-11 80.5
34 TraesCS3A01G537700 chr7A 100.000 40 0 0 2876 2915 487261544 487261583 1.510000e-09 75.0
35 TraesCS3A01G537700 chr6A 94.231 52 3 0 499 550 511460870 511460921 3.250000e-11 80.5
36 TraesCS3A01G537700 chr6A 95.918 49 2 0 502 550 578932450 578932402 3.250000e-11 80.5
37 TraesCS3A01G537700 chr4D 87.755 49 4 2 1198 1245 15710829 15710876 5.470000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G537700 chr3A 749280810 749284731 3921 False 7243.0000 7243 100.000000 1 3922 1 chr3A.!!$F2 3921
1 TraesCS3A01G537700 chr3B 822828835 822835170 6335 False 663.9000 1914 89.303400 107 3922 5 chr3B.!!$F3 3815
2 TraesCS3A01G537700 chr3D 613622208 613627736 5528 False 325.8375 497 88.625125 1 3825 8 chr3D.!!$F2 3824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 3866 0.036022 AGCTCAACCTCAACCTCAGC 59.964 55.0 0.0 0.0 0.0 4.26 F
1081 4314 0.031616 ATCCCCACCTCTCACCTCTC 60.032 60.0 0.0 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 4832 0.178990 GCTGGTGGGGAGTCTGTTTT 60.179 55.0 0.00 0.0 0.0 2.43 R
2955 6376 0.035343 TCCTCCTCGTGTCGACATCT 60.035 55.0 23.12 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.875059 GCTTCCAGTTCAACTTCGGG 59.125 55.000 0.00 0.00 0.00 5.14
68 69 4.525024 TCCAGTTCAACTTCGGGTAAAAA 58.475 39.130 0.00 0.00 0.00 1.94
69 70 4.577283 TCCAGTTCAACTTCGGGTAAAAAG 59.423 41.667 0.00 0.00 0.00 2.27
70 71 4.337274 CCAGTTCAACTTCGGGTAAAAAGT 59.663 41.667 0.00 0.00 37.32 2.66
75 80 3.063510 ACTTCGGGTAAAAAGTAGGCC 57.936 47.619 0.00 0.00 34.05 5.19
76 81 2.372837 ACTTCGGGTAAAAAGTAGGCCA 59.627 45.455 5.01 0.00 34.05 5.36
90 95 5.767816 AGTAGGCCAACTGTTTAGTTTTG 57.232 39.130 5.01 0.00 44.57 2.44
96 101 4.676723 GCCAACTGTTTAGTTTTGCTGTCA 60.677 41.667 0.00 0.00 44.57 3.58
98 103 5.393027 CCAACTGTTTAGTTTTGCTGTCACT 60.393 40.000 0.00 0.00 44.57 3.41
100 105 4.027572 TGTTTAGTTTTGCTGTCACTGC 57.972 40.909 0.00 0.00 0.00 4.40
101 106 3.694072 TGTTTAGTTTTGCTGTCACTGCT 59.306 39.130 8.28 0.00 0.00 4.24
102 107 4.878971 TGTTTAGTTTTGCTGTCACTGCTA 59.121 37.500 8.28 0.00 0.00 3.49
103 108 5.007626 TGTTTAGTTTTGCTGTCACTGCTAG 59.992 40.000 8.28 0.00 0.00 3.42
104 109 3.199880 AGTTTTGCTGTCACTGCTAGT 57.800 42.857 8.28 0.00 0.00 2.57
117 122 2.484651 ACTGCTAGTGAGTAGTGTGTCG 59.515 50.000 0.00 0.00 45.81 4.35
257 274 7.759433 AGCACCAATTATACAAGAAATTTTCCG 59.241 33.333 5.52 0.66 0.00 4.30
275 296 7.827819 TTTTCCGTGAGATGAATTGTACTAG 57.172 36.000 0.00 0.00 0.00 2.57
297 318 9.877178 ACTAGTGTATTATGATTTATAGCTGGC 57.123 33.333 0.00 0.00 0.00 4.85
315 336 0.234106 GCGATTCTGTGATGCATCGG 59.766 55.000 21.34 13.72 30.36 4.18
356 377 4.227197 AGCTACTCCACTACCATTAGCAT 58.773 43.478 0.00 0.00 35.44 3.79
359 380 6.326583 AGCTACTCCACTACCATTAGCATTTA 59.673 38.462 0.00 0.00 35.44 1.40
382 403 3.211045 CAGTGTCCTCCTTTTTCCGAAA 58.789 45.455 0.00 0.00 0.00 3.46
384 405 2.031069 GTGTCCTCCTTTTTCCGAAAGC 60.031 50.000 0.00 0.00 0.00 3.51
406 427 2.905075 ACAAAAAGGAAAAGTGGCTGC 58.095 42.857 0.00 0.00 0.00 5.25
465 486 1.600638 GGGTGGTTCTTCTACGGGG 59.399 63.158 0.00 0.00 0.00 5.73
472 493 3.391955 TGGTTCTTCTACGGGGAAAGAAA 59.608 43.478 6.23 0.00 31.61 2.52
474 495 4.504514 GGTTCTTCTACGGGGAAAGAAAGT 60.505 45.833 6.23 0.00 31.61 2.66
475 496 5.279657 GGTTCTTCTACGGGGAAAGAAAGTA 60.280 44.000 6.23 0.00 31.61 2.24
476 497 6.226052 GTTCTTCTACGGGGAAAGAAAGTAA 58.774 40.000 6.23 0.00 31.61 2.24
477 498 5.787380 TCTTCTACGGGGAAAGAAAGTAAC 58.213 41.667 0.00 0.00 31.61 2.50
478 499 4.541973 TCTACGGGGAAAGAAAGTAACC 57.458 45.455 0.00 0.00 0.00 2.85
540 561 7.548196 TTAATATGCAGAGTAAAAAGGACGG 57.452 36.000 0.00 0.00 0.00 4.79
541 562 2.178912 TGCAGAGTAAAAAGGACGGG 57.821 50.000 0.00 0.00 0.00 5.28
542 563 1.695242 TGCAGAGTAAAAAGGACGGGA 59.305 47.619 0.00 0.00 0.00 5.14
544 565 2.935676 GCAGAGTAAAAAGGACGGGAGG 60.936 54.545 0.00 0.00 0.00 4.30
546 567 1.904537 GAGTAAAAAGGACGGGAGGGA 59.095 52.381 0.00 0.00 0.00 4.20
561 1351 3.324268 GGGAGGGAGTAGTTATTAGTGGC 59.676 52.174 0.00 0.00 0.00 5.01
586 1376 2.163818 TGACCGTTGACTGGTGAATC 57.836 50.000 3.12 0.00 40.63 2.52
591 1381 3.056393 ACCGTTGACTGGTGAATCGAATA 60.056 43.478 0.00 0.00 38.60 1.75
595 1385 5.411781 GTTGACTGGTGAATCGAATAGAGT 58.588 41.667 0.00 0.00 0.00 3.24
598 1388 6.100004 TGACTGGTGAATCGAATAGAGTTTC 58.900 40.000 0.00 0.00 0.00 2.78
612 3778 3.077359 AGAGTTTCAATTCAAGCTCCCG 58.923 45.455 2.35 0.00 34.92 5.14
613 3779 3.074412 GAGTTTCAATTCAAGCTCCCGA 58.926 45.455 0.00 0.00 29.66 5.14
615 3781 3.888930 AGTTTCAATTCAAGCTCCCGAAA 59.111 39.130 0.00 0.00 0.00 3.46
616 3782 3.915437 TTCAATTCAAGCTCCCGAAAC 57.085 42.857 0.00 0.00 0.00 2.78
617 3783 1.804151 TCAATTCAAGCTCCCGAAACG 59.196 47.619 0.00 0.00 0.00 3.60
618 3784 1.804151 CAATTCAAGCTCCCGAAACGA 59.196 47.619 0.00 0.00 0.00 3.85
619 3785 1.726853 ATTCAAGCTCCCGAAACGAG 58.273 50.000 0.00 0.00 0.00 4.18
620 3786 0.320421 TTCAAGCTCCCGAAACGAGG 60.320 55.000 0.00 0.00 0.00 4.63
632 3823 2.156051 AAACGAGGAGGTCTGGTCGC 62.156 60.000 0.00 0.00 33.15 5.19
652 3843 2.072298 CAAGGAAGAGCGAGTCAAAGG 58.928 52.381 0.00 0.00 0.00 3.11
657 3848 0.605589 AGAGCGAGTCAAAGGGTCAG 59.394 55.000 0.00 0.00 0.00 3.51
658 3849 1.004440 AGCGAGTCAAAGGGTCAGC 60.004 57.895 0.00 0.00 0.00 4.26
659 3850 1.004440 GCGAGTCAAAGGGTCAGCT 60.004 57.895 0.00 0.00 0.00 4.24
660 3851 1.016653 GCGAGTCAAAGGGTCAGCTC 61.017 60.000 0.00 0.00 0.00 4.09
661 3852 0.318441 CGAGTCAAAGGGTCAGCTCA 59.682 55.000 0.00 0.00 0.00 4.26
662 3853 1.270305 CGAGTCAAAGGGTCAGCTCAA 60.270 52.381 0.00 0.00 0.00 3.02
664 3855 1.202818 AGTCAAAGGGTCAGCTCAACC 60.203 52.381 6.29 6.29 35.97 3.77
665 3856 1.140312 TCAAAGGGTCAGCTCAACCT 58.860 50.000 13.25 0.75 36.97 3.50
666 3857 1.072331 TCAAAGGGTCAGCTCAACCTC 59.928 52.381 0.00 0.00 36.97 3.85
667 3858 1.140312 AAAGGGTCAGCTCAACCTCA 58.860 50.000 0.00 0.00 36.97 3.86
668 3859 1.140312 AAGGGTCAGCTCAACCTCAA 58.860 50.000 0.00 0.00 36.97 3.02
669 3860 0.398318 AGGGTCAGCTCAACCTCAAC 59.602 55.000 13.25 0.00 36.97 3.18
671 3862 0.398318 GGTCAGCTCAACCTCAACCT 59.602 55.000 7.44 0.00 33.78 3.50
673 3864 1.070758 GTCAGCTCAACCTCAACCTCA 59.929 52.381 0.00 0.00 0.00 3.86
674 3865 1.345741 TCAGCTCAACCTCAACCTCAG 59.654 52.381 0.00 0.00 0.00 3.35
675 3866 0.036022 AGCTCAACCTCAACCTCAGC 59.964 55.000 0.00 0.00 0.00 4.26
676 3867 0.250467 GCTCAACCTCAACCTCAGCA 60.250 55.000 0.00 0.00 0.00 4.41
705 3898 2.793288 TGATGCAAGCAAGAGGATGA 57.207 45.000 0.00 0.00 0.00 2.92
762 3961 4.155733 CCGCGACATGGCCCTACA 62.156 66.667 8.23 0.00 0.00 2.74
766 3965 1.144057 CGACATGGCCCTACACTCC 59.856 63.158 0.00 0.00 0.00 3.85
767 3966 1.330655 CGACATGGCCCTACACTCCT 61.331 60.000 0.00 0.00 0.00 3.69
768 3967 0.466124 GACATGGCCCTACACTCCTC 59.534 60.000 0.00 0.00 0.00 3.71
769 3968 0.043334 ACATGGCCCTACACTCCTCT 59.957 55.000 0.00 0.00 0.00 3.69
770 3969 0.755686 CATGGCCCTACACTCCTCTC 59.244 60.000 0.00 0.00 0.00 3.20
771 3970 0.399233 ATGGCCCTACACTCCTCTCC 60.399 60.000 0.00 0.00 0.00 3.71
772 3971 1.311747 GGCCCTACACTCCTCTCCT 59.688 63.158 0.00 0.00 0.00 3.69
773 3972 0.757561 GGCCCTACACTCCTCTCCTC 60.758 65.000 0.00 0.00 0.00 3.71
774 3973 0.260523 GCCCTACACTCCTCTCCTCT 59.739 60.000 0.00 0.00 0.00 3.69
775 3974 1.752788 GCCCTACACTCCTCTCCTCTC 60.753 61.905 0.00 0.00 0.00 3.20
776 3975 1.133606 CCCTACACTCCTCTCCTCTCC 60.134 61.905 0.00 0.00 0.00 3.71
777 3976 1.850345 CCTACACTCCTCTCCTCTCCT 59.150 57.143 0.00 0.00 0.00 3.69
778 3977 2.158667 CCTACACTCCTCTCCTCTCCTC 60.159 59.091 0.00 0.00 0.00 3.71
779 3978 1.681229 ACACTCCTCTCCTCTCCTCT 58.319 55.000 0.00 0.00 0.00 3.69
780 3979 1.564348 ACACTCCTCTCCTCTCCTCTC 59.436 57.143 0.00 0.00 0.00 3.20
781 3980 1.133792 CACTCCTCTCCTCTCCTCTCC 60.134 61.905 0.00 0.00 0.00 3.71
782 3981 1.275002 ACTCCTCTCCTCTCCTCTCCT 60.275 57.143 0.00 0.00 0.00 3.69
783 3982 1.421646 CTCCTCTCCTCTCCTCTCCTC 59.578 61.905 0.00 0.00 0.00 3.71
784 3983 1.010793 TCCTCTCCTCTCCTCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
785 3984 1.421646 CCTCTCCTCTCCTCTCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
786 3985 1.421646 CTCTCCTCTCCTCTCCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
794 3993 0.478507 CCTCTCCTCTCCTCTCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
811 4010 2.033141 CAGTGCCAGTGGGTGAGG 59.967 66.667 12.15 0.00 36.17 3.86
840 4039 1.626686 CACACCACTGAGAGAGGAGT 58.373 55.000 0.00 0.00 30.90 3.85
841 4040 1.271934 CACACCACTGAGAGAGGAGTG 59.728 57.143 3.94 3.94 39.89 3.51
845 4045 1.616725 CCACTGAGAGAGGAGTGAGCT 60.617 57.143 0.00 0.00 41.90 4.09
847 4047 0.457035 CTGAGAGAGGAGTGAGCTGC 59.543 60.000 0.00 0.00 0.00 5.25
940 4140 1.194781 TCAAGAGAAGCTTCGCCCCT 61.195 55.000 24.31 15.12 33.60 4.79
941 4141 0.322008 CAAGAGAAGCTTCGCCCCTT 60.322 55.000 24.31 19.25 33.60 3.95
944 4144 2.820037 GAAGCTTCGCCCCTTCCG 60.820 66.667 11.40 0.00 33.13 4.30
945 4145 3.310860 GAAGCTTCGCCCCTTCCGA 62.311 63.158 11.40 0.00 33.13 4.55
962 4167 4.714555 ACGACGACGACGACAGCG 62.715 66.667 25.15 13.36 42.66 5.18
981 4186 2.066999 CCACCTCCCTCCACTAGGC 61.067 68.421 0.00 0.00 45.03 3.93
982 4187 2.066999 CACCTCCCTCCACTAGGCC 61.067 68.421 0.00 0.00 45.03 5.19
984 4189 2.840102 CTCCCTCCACTAGGCCGG 60.840 72.222 0.00 0.00 45.03 6.13
990 4195 4.796495 CCACTAGGCCGGCCCAAC 62.796 72.222 41.72 17.85 36.58 3.77
991 4196 4.796495 CACTAGGCCGGCCCAACC 62.796 72.222 41.72 17.41 36.58 3.77
1068 4294 1.142936 CCACTCATCCATCATCCCCA 58.857 55.000 0.00 0.00 0.00 4.96
1070 4296 1.143813 ACTCATCCATCATCCCCACC 58.856 55.000 0.00 0.00 0.00 4.61
1080 4313 0.326048 CATCCCCACCTCTCACCTCT 60.326 60.000 0.00 0.00 0.00 3.69
1081 4314 0.031616 ATCCCCACCTCTCACCTCTC 60.032 60.000 0.00 0.00 0.00 3.20
1082 4315 1.079256 CCCCACCTCTCACCTCTCA 59.921 63.158 0.00 0.00 0.00 3.27
1083 4316 1.261238 CCCCACCTCTCACCTCTCAC 61.261 65.000 0.00 0.00 0.00 3.51
1084 4317 1.261238 CCCACCTCTCACCTCTCACC 61.261 65.000 0.00 0.00 0.00 4.02
1085 4318 0.252012 CCACCTCTCACCTCTCACCT 60.252 60.000 0.00 0.00 0.00 4.00
1086 4319 1.181786 CACCTCTCACCTCTCACCTC 58.818 60.000 0.00 0.00 0.00 3.85
1087 4320 0.040499 ACCTCTCACCTCTCACCTCC 59.960 60.000 0.00 0.00 0.00 4.30
1088 4321 1.034838 CCTCTCACCTCTCACCTCCG 61.035 65.000 0.00 0.00 0.00 4.63
1089 4322 0.322997 CTCTCACCTCTCACCTCCGT 60.323 60.000 0.00 0.00 0.00 4.69
1090 4323 0.322636 TCTCACCTCTCACCTCCGTC 60.323 60.000 0.00 0.00 0.00 4.79
1091 4324 0.322997 CTCACCTCTCACCTCCGTCT 60.323 60.000 0.00 0.00 0.00 4.18
1092 4325 0.322636 TCACCTCTCACCTCCGTCTC 60.323 60.000 0.00 0.00 0.00 3.36
1093 4326 1.000646 ACCTCTCACCTCCGTCTCC 60.001 63.158 0.00 0.00 0.00 3.71
1094 4327 1.304952 CCTCTCACCTCCGTCTCCT 59.695 63.158 0.00 0.00 0.00 3.69
1095 4328 0.323908 CCTCTCACCTCCGTCTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
1096 4329 1.551452 CTCTCACCTCCGTCTCCTTT 58.449 55.000 0.00 0.00 0.00 3.11
1097 4330 1.474879 CTCTCACCTCCGTCTCCTTTC 59.525 57.143 0.00 0.00 0.00 2.62
1098 4331 0.533032 CTCACCTCCGTCTCCTTTCC 59.467 60.000 0.00 0.00 0.00 3.13
1099 4332 0.178944 TCACCTCCGTCTCCTTTCCA 60.179 55.000 0.00 0.00 0.00 3.53
1100 4333 0.905357 CACCTCCGTCTCCTTTCCAT 59.095 55.000 0.00 0.00 0.00 3.41
1101 4334 1.279271 CACCTCCGTCTCCTTTCCATT 59.721 52.381 0.00 0.00 0.00 3.16
1102 4335 1.555533 ACCTCCGTCTCCTTTCCATTC 59.444 52.381 0.00 0.00 0.00 2.67
1122 4355 1.650825 CACCACCAAGCAAACCAAAC 58.349 50.000 0.00 0.00 0.00 2.93
1127 4360 3.077359 CACCAAGCAAACCAAACCAAAA 58.923 40.909 0.00 0.00 0.00 2.44
1128 4361 3.078097 ACCAAGCAAACCAAACCAAAAC 58.922 40.909 0.00 0.00 0.00 2.43
1129 4362 2.421775 CCAAGCAAACCAAACCAAAACC 59.578 45.455 0.00 0.00 0.00 3.27
1200 4455 1.075151 CCACCCCTCCTCCTACCTC 60.075 68.421 0.00 0.00 0.00 3.85
1206 4461 0.109723 CCTCCTCCTACCTCCTCGAG 59.890 65.000 5.13 5.13 0.00 4.04
1209 4464 0.536460 CCTCCTACCTCCTCGAGCTC 60.536 65.000 6.99 2.73 0.00 4.09
1306 4561 2.742116 TACGGCCCATCTCCCAAGC 61.742 63.158 0.00 0.00 0.00 4.01
1308 4563 4.529731 GGCCCATCTCCCAAGCCC 62.530 72.222 0.00 0.00 37.66 5.19
1309 4564 3.743017 GCCCATCTCCCAAGCCCA 61.743 66.667 0.00 0.00 0.00 5.36
1314 4569 0.967380 CATCTCCCAAGCCCACCAAC 60.967 60.000 0.00 0.00 0.00 3.77
1321 4582 3.002620 AAGCCCACCAACACCACCA 62.003 57.895 0.00 0.00 0.00 4.17
1324 4585 1.380515 CCCACCAACACCACCAACA 60.381 57.895 0.00 0.00 0.00 3.33
1325 4586 1.391157 CCCACCAACACCACCAACAG 61.391 60.000 0.00 0.00 0.00 3.16
1326 4587 1.391157 CCACCAACACCACCAACAGG 61.391 60.000 0.00 0.00 0.00 4.00
1381 4642 4.435436 CGCTCTACGGCAGCACCA 62.435 66.667 0.00 0.00 39.03 4.17
1473 4734 3.465403 CTCCTCCTCGCCCACCAG 61.465 72.222 0.00 0.00 0.00 4.00
1548 4809 3.360423 ATCCTCCGACCTCCTCGCA 62.360 63.158 0.00 0.00 41.46 5.10
1559 4820 3.680786 CCTCGCACTCGACCACCA 61.681 66.667 0.00 0.00 40.21 4.17
1563 4824 2.665185 GCACTCGACCACCACCAC 60.665 66.667 0.00 0.00 0.00 4.16
1565 4826 3.612681 ACTCGACCACCACCACCG 61.613 66.667 0.00 0.00 0.00 4.94
1572 4833 4.885270 CACCACCACCGCCACCAA 62.885 66.667 0.00 0.00 0.00 3.67
1573 4834 4.130554 ACCACCACCGCCACCAAA 62.131 61.111 0.00 0.00 0.00 3.28
1574 4835 2.835431 CCACCACCGCCACCAAAA 60.835 61.111 0.00 0.00 0.00 2.44
1585 4846 0.184933 CCACCAAAACAGACTCCCCA 59.815 55.000 0.00 0.00 0.00 4.96
1611 4872 2.234908 CCCCACCAAGAAACAACAACAA 59.765 45.455 0.00 0.00 0.00 2.83
1614 4875 3.306364 CCACCAAGAAACAACAACAACCA 60.306 43.478 0.00 0.00 0.00 3.67
1617 4878 4.173256 CCAAGAAACAACAACAACCAGAC 58.827 43.478 0.00 0.00 0.00 3.51
1618 4879 4.082245 CCAAGAAACAACAACAACCAGACT 60.082 41.667 0.00 0.00 0.00 3.24
1619 4880 4.965119 AGAAACAACAACAACCAGACTC 57.035 40.909 0.00 0.00 0.00 3.36
1620 4881 3.694566 AGAAACAACAACAACCAGACTCC 59.305 43.478 0.00 0.00 0.00 3.85
1633 4894 4.824515 ACTCCTCCTCCTCGCCGG 62.825 72.222 0.00 0.00 0.00 6.13
1661 4922 2.429930 CGCCAGGAGGACAACCAA 59.570 61.111 0.00 0.00 38.94 3.67
1662 4923 1.228124 CGCCAGGAGGACAACCAAA 60.228 57.895 0.00 0.00 38.94 3.28
1665 4926 1.341209 GCCAGGAGGACAACCAAAAAG 59.659 52.381 0.00 0.00 38.94 2.27
1666 4927 1.963515 CCAGGAGGACAACCAAAAAGG 59.036 52.381 0.00 0.00 39.79 3.11
1668 4929 2.623416 CAGGAGGACAACCAAAAAGGAC 59.377 50.000 0.00 0.00 41.22 3.85
1669 4930 2.514160 AGGAGGACAACCAAAAAGGACT 59.486 45.455 0.00 0.00 41.22 3.85
1673 4934 4.715713 AGGACAACCAAAAAGGACTACTC 58.284 43.478 0.00 0.00 41.22 2.59
1674 4935 3.819337 GGACAACCAAAAAGGACTACTCC 59.181 47.826 0.00 0.00 41.22 3.85
1788 5049 1.579932 CTACACGCACGACTGGACT 59.420 57.895 0.00 0.00 0.00 3.85
2180 5444 2.355363 CGACTTGGACGCCGACAA 60.355 61.111 0.00 0.00 0.00 3.18
2181 5445 2.654912 CGACTTGGACGCCGACAAC 61.655 63.158 0.00 0.00 0.00 3.32
2182 5446 2.280592 ACTTGGACGCCGACAACC 60.281 61.111 0.00 0.00 0.00 3.77
2183 5447 2.280524 CTTGGACGCCGACAACCA 60.281 61.111 0.00 0.00 0.00 3.67
2184 5448 2.280524 TTGGACGCCGACAACCAG 60.281 61.111 0.00 0.00 33.85 4.00
2185 5449 2.709125 CTTGGACGCCGACAACCAGA 62.709 60.000 0.00 0.00 33.85 3.86
2186 5450 2.029964 GGACGCCGACAACCAGAA 59.970 61.111 0.00 0.00 0.00 3.02
2301 5568 3.738246 CAGCACCAGCAGCAGCAG 61.738 66.667 3.17 0.00 45.49 4.24
2304 5571 3.292159 CACCAGCAGCAGCAGCAA 61.292 61.111 12.92 0.00 45.49 3.91
2307 5574 2.255554 CAGCAGCAGCAGCAACAG 59.744 61.111 12.92 0.00 45.49 3.16
2314 5581 3.671411 AGCAGCAACAGCAGCAGC 61.671 61.111 7.56 0.00 42.49 5.25
2315 5582 3.973516 GCAGCAACAGCAGCAGCA 61.974 61.111 3.17 0.00 43.05 4.41
2316 5583 2.255554 CAGCAACAGCAGCAGCAG 59.744 61.111 3.17 0.00 45.49 4.24
2317 5584 3.671411 AGCAACAGCAGCAGCAGC 61.671 61.111 3.17 0.46 45.49 5.25
2318 5585 3.973516 GCAACAGCAGCAGCAGCA 61.974 61.111 12.92 0.00 45.49 4.41
2319 5586 2.255554 CAACAGCAGCAGCAGCAG 59.744 61.111 12.92 6.60 45.49 4.24
2334 5601 2.050351 CAGCAGCAACAGCAGCAC 60.050 61.111 7.56 0.00 42.49 4.40
2340 5607 3.121934 CAACAGCAGCACCAGCAA 58.878 55.556 0.00 0.00 45.49 3.91
2346 5613 1.299620 GCAGCACCAGCAACAACAG 60.300 57.895 0.00 0.00 45.49 3.16
2349 5616 1.111116 AGCACCAGCAACAACAGCAT 61.111 50.000 0.00 0.00 45.49 3.79
2451 5721 4.681978 ACCTTCGTGCACCGCTCC 62.682 66.667 12.15 0.00 36.19 4.70
2776 6168 2.825086 AACTTGTTGTGCTCGAACAC 57.175 45.000 12.01 12.01 41.10 3.32
2817 6209 1.745087 GCCCAATGATTCATGTGTCGT 59.255 47.619 0.00 0.00 0.00 4.34
2818 6210 2.223340 GCCCAATGATTCATGTGTCGTC 60.223 50.000 0.00 0.00 0.00 4.20
2819 6211 2.030823 CCCAATGATTCATGTGTCGTCG 59.969 50.000 0.00 0.00 0.00 5.12
2826 6222 1.136690 TCATGTGTCGTCGTCTTTGC 58.863 50.000 0.00 0.00 0.00 3.68
2830 6226 1.371267 TGTCGTCGTCTTTGCCTCG 60.371 57.895 0.00 0.00 0.00 4.63
2859 6277 3.865383 TGCAGCCGCCCTGGATAG 61.865 66.667 0.00 0.00 42.03 2.08
2860 6278 3.866582 GCAGCCGCCCTGGATAGT 61.867 66.667 0.00 0.00 42.03 2.12
2861 6279 2.109799 CAGCCGCCCTGGATAGTG 59.890 66.667 0.00 0.00 42.00 2.74
2862 6280 3.164269 AGCCGCCCTGGATAGTGG 61.164 66.667 0.00 0.00 42.00 4.00
2863 6281 3.161450 GCCGCCCTGGATAGTGGA 61.161 66.667 5.35 0.00 42.00 4.02
2864 6282 2.520536 GCCGCCCTGGATAGTGGAT 61.521 63.158 5.35 0.00 42.00 3.41
2865 6283 1.192146 GCCGCCCTGGATAGTGGATA 61.192 60.000 5.35 0.00 42.00 2.59
2866 6284 0.608640 CCGCCCTGGATAGTGGATAC 59.391 60.000 0.00 0.00 42.00 2.24
2867 6285 0.243907 CGCCCTGGATAGTGGATACG 59.756 60.000 0.00 0.00 42.51 3.06
2880 6298 2.349886 GTGGATACGAAGCTGCTCAAAG 59.650 50.000 1.00 0.00 42.51 2.77
2897 6315 7.663827 TGCTCAAAGAAAGTTGAATGAATGAT 58.336 30.769 0.00 0.00 37.08 2.45
2910 6328 6.926313 TGAATGAATGATTGATTGAGCACAA 58.074 32.000 0.00 0.00 40.42 3.33
2998 6419 7.883833 GGAGACTTTTCCTCCTAATACAAAAGT 59.116 37.037 7.61 7.61 45.52 2.66
3070 6524 9.508642 TCATTCAACACCATACATACAAAAGTA 57.491 29.630 0.00 0.00 0.00 2.24
3157 6622 4.276926 GCACATCCTCTAACCAATTCATCC 59.723 45.833 0.00 0.00 0.00 3.51
3197 6662 3.584834 TCTTCAATTCAATGACGAGCGA 58.415 40.909 0.00 0.00 0.00 4.93
3267 6737 1.208293 CCTCCACCCTCTCTTTGTAGC 59.792 57.143 0.00 0.00 0.00 3.58
3288 6941 3.247442 CCGTCGTATTAGCTTGTTGTCA 58.753 45.455 0.00 0.00 0.00 3.58
3293 6946 6.563381 CGTCGTATTAGCTTGTTGTCACTTTT 60.563 38.462 0.00 0.00 0.00 2.27
3295 6948 6.480651 TCGTATTAGCTTGTTGTCACTTTTGA 59.519 34.615 0.00 0.00 0.00 2.69
3335 6988 1.781025 CGCTTCAACGCCTTGACCAA 61.781 55.000 0.00 0.00 36.06 3.67
3339 6992 1.021202 TCAACGCCTTGACCAAACAG 58.979 50.000 0.00 0.00 31.00 3.16
3409 7069 1.522668 CATTTGACCTTGTCTCGCCA 58.477 50.000 0.00 0.00 33.15 5.69
3420 7080 1.281899 GTCTCGCCAATCCTTCTTCG 58.718 55.000 0.00 0.00 0.00 3.79
3452 7112 0.987294 CCTCTTCCCCTTCTCTTGCA 59.013 55.000 0.00 0.00 0.00 4.08
3464 7124 1.303561 TCTTGCACCACCCATCTGC 60.304 57.895 0.00 0.00 0.00 4.26
3497 7157 4.497173 CGATTGTTTGTGTGTGTCCAATCA 60.497 41.667 0.00 0.00 38.56 2.57
3504 7164 1.952990 TGTGTGTCCAATCATTTGCGT 59.047 42.857 0.00 0.00 0.00 5.24
3514 7174 4.621034 CCAATCATTTGCGTTAGGTTTGTC 59.379 41.667 0.00 0.00 0.00 3.18
3556 7216 2.910688 AGTGACACGTGGAGTTCAAT 57.089 45.000 21.57 10.70 0.00 2.57
3560 7220 2.159028 TGACACGTGGAGTTCAATGTCA 60.159 45.455 21.57 13.48 44.62 3.58
3565 7225 3.069016 ACGTGGAGTTCAATGTCACACTA 59.931 43.478 0.00 0.00 0.00 2.74
3578 7238 3.958798 TGTCACACTAGGCTATAGAACCC 59.041 47.826 3.21 0.00 0.00 4.11
3588 7248 2.159352 GCTATAGAACCCGCTAGCTAGC 60.159 54.545 31.88 31.88 45.62 3.42
3594 7254 1.320507 ACCCGCTAGCTAGCTAAGAC 58.679 55.000 36.02 15.48 46.85 3.01
3614 7274 3.664107 ACTGTGTGGATATGTGTGTGTC 58.336 45.455 0.00 0.00 0.00 3.67
3706 7366 5.751990 TCGTGTGTTTCTTCTACTTTTCTCC 59.248 40.000 0.00 0.00 0.00 3.71
3790 9128 8.707839 CGTTTCATTTTGTGCAATACCTTTATT 58.292 29.630 0.00 0.00 0.00 1.40
3839 9177 6.333416 CACTCTAAAGTGCAATCTAGCTACA 58.667 40.000 0.00 0.00 46.01 2.74
3868 9206 9.810545 GCTAGAAACTAATGATATCCTATCACC 57.189 37.037 0.00 0.00 0.00 4.02
3871 9209 8.307483 AGAAACTAATGATATCCTATCACCACG 58.693 37.037 0.00 0.00 0.00 4.94
3872 9210 7.776618 AACTAATGATATCCTATCACCACGA 57.223 36.000 0.00 0.00 0.00 4.35
3873 9211 7.397892 ACTAATGATATCCTATCACCACGAG 57.602 40.000 0.00 0.00 0.00 4.18
3874 9212 6.948886 ACTAATGATATCCTATCACCACGAGT 59.051 38.462 0.00 0.00 0.00 4.18
3875 9213 8.107729 ACTAATGATATCCTATCACCACGAGTA 58.892 37.037 0.00 0.00 0.00 2.59
3914 9252 1.138661 CCCACAATGCCACAACACTTT 59.861 47.619 0.00 0.00 0.00 2.66
3915 9253 2.472816 CCACAATGCCACAACACTTTC 58.527 47.619 0.00 0.00 0.00 2.62
3916 9254 2.101249 CCACAATGCCACAACACTTTCT 59.899 45.455 0.00 0.00 0.00 2.52
3917 9255 3.317711 CCACAATGCCACAACACTTTCTA 59.682 43.478 0.00 0.00 0.00 2.10
3918 9256 4.290155 CACAATGCCACAACACTTTCTAC 58.710 43.478 0.00 0.00 0.00 2.59
3919 9257 3.951037 ACAATGCCACAACACTTTCTACA 59.049 39.130 0.00 0.00 0.00 2.74
3920 9258 4.036734 ACAATGCCACAACACTTTCTACAG 59.963 41.667 0.00 0.00 0.00 2.74
3921 9259 3.275617 TGCCACAACACTTTCTACAGT 57.724 42.857 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.628646 CTGGAAGCCACCGGGGAAG 62.629 68.421 4.41 0.00 40.01 3.46
33 34 3.646715 CTGGAAGCCACCGGGGAA 61.647 66.667 4.41 0.00 40.01 3.97
34 35 4.974438 ACTGGAAGCCACCGGGGA 62.974 66.667 4.41 0.00 40.34 4.81
35 36 3.920093 GAACTGGAAGCCACCGGGG 62.920 68.421 6.32 0.00 40.34 5.73
36 37 2.359975 GAACTGGAAGCCACCGGG 60.360 66.667 6.32 0.00 40.34 5.73
37 38 1.228124 TTGAACTGGAAGCCACCGG 60.228 57.895 0.00 0.00 37.60 5.28
38 39 0.535102 AGTTGAACTGGAAGCCACCG 60.535 55.000 0.00 0.00 37.60 4.94
39 40 1.609072 GAAGTTGAACTGGAAGCCACC 59.391 52.381 0.00 0.00 37.60 4.61
40 41 1.264288 CGAAGTTGAACTGGAAGCCAC 59.736 52.381 0.00 0.00 37.60 5.01
41 42 1.593196 CGAAGTTGAACTGGAAGCCA 58.407 50.000 0.00 0.00 37.60 4.75
42 43 0.875059 CCGAAGTTGAACTGGAAGCC 59.125 55.000 0.00 0.00 37.60 4.35
43 44 0.875059 CCCGAAGTTGAACTGGAAGC 59.125 55.000 0.00 0.00 37.60 3.86
62 63 7.268199 ACTAAACAGTTGGCCTACTTTTTAC 57.732 36.000 25.23 4.76 32.16 2.01
68 69 4.037565 GCAAAACTAAACAGTTGGCCTACT 59.962 41.667 14.58 14.58 31.16 2.57
69 70 4.037565 AGCAAAACTAAACAGTTGGCCTAC 59.962 41.667 9.54 9.54 35.11 3.18
70 71 4.037446 CAGCAAAACTAAACAGTTGGCCTA 59.963 41.667 3.32 0.00 35.11 3.93
75 80 5.512788 CAGTGACAGCAAAACTAAACAGTTG 59.487 40.000 0.00 0.00 31.64 3.16
76 81 5.640732 CAGTGACAGCAAAACTAAACAGTT 58.359 37.500 0.00 0.00 0.00 3.16
96 101 2.484651 CGACACACTACTCACTAGCAGT 59.515 50.000 0.85 0.85 28.67 4.40
98 103 2.225727 CACGACACACTACTCACTAGCA 59.774 50.000 0.00 0.00 0.00 3.49
100 105 2.812591 ACCACGACACACTACTCACTAG 59.187 50.000 0.00 0.00 0.00 2.57
101 106 2.810274 GACCACGACACACTACTCACTA 59.190 50.000 0.00 0.00 0.00 2.74
102 107 1.607628 GACCACGACACACTACTCACT 59.392 52.381 0.00 0.00 0.00 3.41
103 108 1.607628 AGACCACGACACACTACTCAC 59.392 52.381 0.00 0.00 0.00 3.51
104 109 1.977056 AGACCACGACACACTACTCA 58.023 50.000 0.00 0.00 0.00 3.41
105 110 3.366440 AAAGACCACGACACACTACTC 57.634 47.619 0.00 0.00 0.00 2.59
117 122 3.154710 CCCTCCTAAACCAAAAGACCAC 58.845 50.000 0.00 0.00 0.00 4.16
192 200 3.902881 ACCAGAGTAAGAGCCAAGATG 57.097 47.619 0.00 0.00 0.00 2.90
193 207 6.213600 TCTTTAACCAGAGTAAGAGCCAAGAT 59.786 38.462 0.00 0.00 0.00 2.40
247 264 8.237267 AGTACAATTCATCTCACGGAAAATTTC 58.763 33.333 0.00 0.00 0.00 2.17
275 296 7.827819 TCGCCAGCTATAAATCATAATACAC 57.172 36.000 0.00 0.00 0.00 2.90
297 318 0.234106 GCCGATGCATCACAGAATCG 59.766 55.000 25.70 11.06 41.14 3.34
356 377 4.142038 GGAAAAAGGAGGACACTGCTAAA 58.858 43.478 0.00 0.00 45.46 1.85
362 383 3.477530 CTTTCGGAAAAAGGAGGACACT 58.522 45.455 4.53 0.00 0.00 3.55
364 385 2.227194 GCTTTCGGAAAAAGGAGGACA 58.773 47.619 4.53 0.00 0.00 4.02
365 386 2.227194 TGCTTTCGGAAAAAGGAGGAC 58.773 47.619 4.53 0.00 0.00 3.85
366 387 2.621526 GTTGCTTTCGGAAAAAGGAGGA 59.378 45.455 4.53 0.00 0.00 3.71
382 403 3.055167 AGCCACTTTTCCTTTTTGTTGCT 60.055 39.130 0.00 0.00 0.00 3.91
384 405 3.063861 GCAGCCACTTTTCCTTTTTGTTG 59.936 43.478 0.00 0.00 0.00 3.33
406 427 3.355378 TGATGCCAACCTATCCACAAAG 58.645 45.455 0.00 0.00 0.00 2.77
439 460 3.721087 AGAAGAACCACCCCATTACTG 57.279 47.619 0.00 0.00 0.00 2.74
445 466 1.196104 CCCGTAGAAGAACCACCCCA 61.196 60.000 0.00 0.00 0.00 4.96
514 535 8.455682 CCGTCCTTTTTACTCTGCATATTAAAA 58.544 33.333 4.04 4.04 0.00 1.52
515 536 7.066525 CCCGTCCTTTTTACTCTGCATATTAAA 59.933 37.037 0.00 0.00 0.00 1.52
516 537 6.540914 CCCGTCCTTTTTACTCTGCATATTAA 59.459 38.462 0.00 0.00 0.00 1.40
518 539 4.881850 CCCGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
520 541 3.516300 TCCCGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
521 542 2.304761 TCCCGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
522 543 1.695242 TCCCGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
523 544 2.347731 CTCCCGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
525 546 1.907255 CCCTCCCGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
526 547 1.904537 TCCCTCCCGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
527 548 1.907255 CTCCCTCCCGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
528 549 1.627329 ACTCCCTCCCGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
529 550 2.034436 ACTCCCTCCCGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
530 551 1.907255 CTACTCCCTCCCGTCCTTTTT 59.093 52.381 0.00 0.00 0.00 1.94
532 553 0.412640 ACTACTCCCTCCCGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
533 554 0.412640 AACTACTCCCTCCCGTCCTT 59.587 55.000 0.00 0.00 0.00 3.36
534 555 1.302907 TAACTACTCCCTCCCGTCCT 58.697 55.000 0.00 0.00 0.00 3.85
535 556 2.378378 ATAACTACTCCCTCCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
536 557 4.277921 CACTAATAACTACTCCCTCCCGTC 59.722 50.000 0.00 0.00 0.00 4.79
537 558 4.213513 CACTAATAACTACTCCCTCCCGT 58.786 47.826 0.00 0.00 0.00 5.28
538 559 3.573110 CCACTAATAACTACTCCCTCCCG 59.427 52.174 0.00 0.00 0.00 5.14
540 561 3.965347 TGCCACTAATAACTACTCCCTCC 59.035 47.826 0.00 0.00 0.00 4.30
541 562 4.039366 CCTGCCACTAATAACTACTCCCTC 59.961 50.000 0.00 0.00 0.00 4.30
542 563 3.967987 CCTGCCACTAATAACTACTCCCT 59.032 47.826 0.00 0.00 0.00 4.20
544 565 3.388350 AGCCTGCCACTAATAACTACTCC 59.612 47.826 0.00 0.00 0.00 3.85
546 567 4.469945 TCAAGCCTGCCACTAATAACTACT 59.530 41.667 0.00 0.00 0.00 2.57
561 1351 1.230635 CCAGTCAACGGTCAAGCCTG 61.231 60.000 0.00 0.00 34.25 4.85
586 1376 6.457528 GGGAGCTTGAATTGAAACTCTATTCG 60.458 42.308 7.79 0.00 40.05 3.34
591 1381 3.077359 CGGGAGCTTGAATTGAAACTCT 58.923 45.455 7.79 0.00 0.00 3.24
595 1385 3.304391 CGTTTCGGGAGCTTGAATTGAAA 60.304 43.478 0.00 0.00 0.00 2.69
598 1388 1.804151 TCGTTTCGGGAGCTTGAATTG 59.196 47.619 0.00 0.00 0.00 2.32
612 3778 0.109226 CGACCAGACCTCCTCGTTTC 60.109 60.000 0.00 0.00 0.00 2.78
613 3779 1.965219 CGACCAGACCTCCTCGTTT 59.035 57.895 0.00 0.00 0.00 3.60
615 3781 3.063084 GCGACCAGACCTCCTCGT 61.063 66.667 0.00 0.00 0.00 4.18
616 3782 2.549611 CTTGCGACCAGACCTCCTCG 62.550 65.000 0.00 0.00 0.00 4.63
617 3783 1.216710 CTTGCGACCAGACCTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
618 3784 2.286523 CCTTGCGACCAGACCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
619 3785 1.827399 TTCCTTGCGACCAGACCTCC 61.827 60.000 0.00 0.00 0.00 4.30
620 3786 0.390472 CTTCCTTGCGACCAGACCTC 60.390 60.000 0.00 0.00 0.00 3.85
632 3823 2.072298 CCTTTGACTCGCTCTTCCTTG 58.928 52.381 0.00 0.00 0.00 3.61
652 3843 0.398318 AGGTTGAGGTTGAGCTGACC 59.602 55.000 7.62 7.62 37.44 4.02
657 3848 0.250467 TGCTGAGGTTGAGGTTGAGC 60.250 55.000 0.00 0.00 0.00 4.26
658 3849 1.071385 AGTGCTGAGGTTGAGGTTGAG 59.929 52.381 0.00 0.00 0.00 3.02
659 3850 1.131638 AGTGCTGAGGTTGAGGTTGA 58.868 50.000 0.00 0.00 0.00 3.18
660 3851 1.605710 CAAGTGCTGAGGTTGAGGTTG 59.394 52.381 0.00 0.00 0.00 3.77
661 3852 1.972872 CAAGTGCTGAGGTTGAGGTT 58.027 50.000 0.00 0.00 0.00 3.50
662 3853 0.536006 GCAAGTGCTGAGGTTGAGGT 60.536 55.000 0.00 0.00 38.21 3.85
664 3855 1.002033 GTTGCAAGTGCTGAGGTTGAG 60.002 52.381 0.00 0.00 42.66 3.02
665 3856 1.024271 GTTGCAAGTGCTGAGGTTGA 58.976 50.000 0.00 0.00 42.66 3.18
666 3857 1.027357 AGTTGCAAGTGCTGAGGTTG 58.973 50.000 5.84 0.00 42.66 3.77
667 3858 1.406539 CAAGTTGCAAGTGCTGAGGTT 59.593 47.619 7.73 0.00 42.66 3.50
668 3859 1.027357 CAAGTTGCAAGTGCTGAGGT 58.973 50.000 7.73 0.00 42.66 3.85
669 3860 1.311859 TCAAGTTGCAAGTGCTGAGG 58.688 50.000 7.73 0.00 42.66 3.86
671 3862 1.001048 GCATCAAGTTGCAAGTGCTGA 60.001 47.619 7.73 9.28 42.31 4.26
673 3864 3.879912 GCATCAAGTTGCAAGTGCT 57.120 47.368 7.73 0.00 42.31 4.40
703 3896 3.765432 TCTTCTTCCTCCTCATCCTCA 57.235 47.619 0.00 0.00 0.00 3.86
704 3897 4.141733 CCTTTCTTCTTCCTCCTCATCCTC 60.142 50.000 0.00 0.00 0.00 3.71
705 3898 3.779738 CCTTTCTTCTTCCTCCTCATCCT 59.220 47.826 0.00 0.00 0.00 3.24
752 3951 0.399233 GGAGAGGAGTGTAGGGCCAT 60.399 60.000 6.18 0.00 0.00 4.40
754 3953 0.757561 GAGGAGAGGAGTGTAGGGCC 60.758 65.000 0.00 0.00 0.00 5.80
755 3954 0.260523 AGAGGAGAGGAGTGTAGGGC 59.739 60.000 0.00 0.00 0.00 5.19
760 3959 1.564348 GAGAGGAGAGGAGAGGAGTGT 59.436 57.143 0.00 0.00 0.00 3.55
761 3960 1.133792 GGAGAGGAGAGGAGAGGAGTG 60.134 61.905 0.00 0.00 0.00 3.51
762 3961 1.222567 GGAGAGGAGAGGAGAGGAGT 58.777 60.000 0.00 0.00 0.00 3.85
766 3965 1.421646 GGAGAGGAGAGGAGAGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
767 3966 1.010793 AGGAGAGGAGAGGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
768 3967 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
769 3968 1.010793 AGAGGAGAGGAGAGGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
770 3969 1.421646 GAGAGGAGAGGAGAGGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
771 3970 1.421646 GGAGAGGAGAGGAGAGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
772 3971 1.010793 AGGAGAGGAGAGGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
773 3972 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
774 3973 1.518367 GAGGAGAGGAGAGGAGAGGA 58.482 60.000 0.00 0.00 0.00 3.71
775 3974 0.478507 GGAGGAGAGGAGAGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
776 3975 1.143684 CTGGAGGAGAGGAGAGGAGAG 59.856 61.905 0.00 0.00 0.00 3.20
777 3976 1.221635 CTGGAGGAGAGGAGAGGAGA 58.778 60.000 0.00 0.00 0.00 3.71
778 3977 0.926293 ACTGGAGGAGAGGAGAGGAG 59.074 60.000 0.00 0.00 0.00 3.69
779 3978 0.628522 CACTGGAGGAGAGGAGAGGA 59.371 60.000 0.00 0.00 0.00 3.71
780 3979 1.042559 GCACTGGAGGAGAGGAGAGG 61.043 65.000 0.00 0.00 0.00 3.69
781 3980 1.042559 GGCACTGGAGGAGAGGAGAG 61.043 65.000 0.00 0.00 0.00 3.20
782 3981 1.000993 GGCACTGGAGGAGAGGAGA 59.999 63.158 0.00 0.00 0.00 3.71
783 3982 1.305633 TGGCACTGGAGGAGAGGAG 60.306 63.158 0.00 0.00 0.00 3.69
784 3983 1.305633 CTGGCACTGGAGGAGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
785 3984 1.611851 ACTGGCACTGGAGGAGAGG 60.612 63.158 0.00 0.00 0.00 3.69
786 3985 1.595882 CACTGGCACTGGAGGAGAG 59.404 63.158 0.00 0.00 0.00 3.20
794 3993 2.033141 CCTCACCCACTGGCACTG 59.967 66.667 0.00 0.00 33.59 3.66
822 4021 1.145945 TCACTCCTCTCTCAGTGGTGT 59.854 52.381 0.00 0.00 40.49 4.16
823 4022 1.818060 CTCACTCCTCTCTCAGTGGTG 59.182 57.143 0.00 0.00 40.49 4.17
824 4023 1.890573 GCTCACTCCTCTCTCAGTGGT 60.891 57.143 0.00 0.00 40.49 4.16
857 4057 3.499737 CGTGCGTGATGCTTCCCC 61.500 66.667 0.00 0.00 46.63 4.81
911 4111 3.876589 TTCTCTTGACCGCGTGCCC 62.877 63.158 4.92 0.00 0.00 5.36
912 4112 2.357034 TTCTCTTGACCGCGTGCC 60.357 61.111 4.92 0.00 0.00 5.01
940 4140 3.035503 TCGTCGTCGTCGTCGGAA 61.036 61.111 18.80 1.20 45.17 4.30
941 4141 3.767230 GTCGTCGTCGTCGTCGGA 61.767 66.667 18.80 5.39 45.17 4.55
944 4144 2.864248 GCTGTCGTCGTCGTCGTC 60.864 66.667 11.41 6.94 38.33 4.20
945 4145 4.714555 CGCTGTCGTCGTCGTCGT 62.715 66.667 11.41 0.00 38.33 4.34
962 4167 2.066999 CCTAGTGGAGGGAGGTGGC 61.067 68.421 0.00 0.00 42.39 5.01
984 4189 2.234913 ATAGACGGACACGGTTGGGC 62.235 60.000 0.00 0.00 46.48 5.36
985 4190 1.105457 TATAGACGGACACGGTTGGG 58.895 55.000 0.00 0.00 46.48 4.12
986 4191 4.293415 GTTATATAGACGGACACGGTTGG 58.707 47.826 0.00 0.00 46.48 3.77
987 4192 4.037208 AGGTTATATAGACGGACACGGTTG 59.963 45.833 0.00 0.00 46.48 3.77
988 4193 4.210331 AGGTTATATAGACGGACACGGTT 58.790 43.478 0.00 0.00 46.48 4.44
989 4194 3.817647 GAGGTTATATAGACGGACACGGT 59.182 47.826 0.00 0.00 46.48 4.83
990 4195 3.190118 GGAGGTTATATAGACGGACACGG 59.810 52.174 0.00 0.00 46.48 4.94
993 4198 4.147321 GGTGGAGGTTATATAGACGGACA 58.853 47.826 0.00 0.00 0.00 4.02
994 4199 3.509184 GGGTGGAGGTTATATAGACGGAC 59.491 52.174 0.00 0.00 0.00 4.79
995 4200 3.501019 GGGGTGGAGGTTATATAGACGGA 60.501 52.174 0.00 0.00 0.00 4.69
1068 4294 0.040499 GGAGGTGAGAGGTGAGAGGT 59.960 60.000 0.00 0.00 0.00 3.85
1070 4296 0.322997 ACGGAGGTGAGAGGTGAGAG 60.323 60.000 0.00 0.00 0.00 3.20
1080 4313 0.178944 TGGAAAGGAGACGGAGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
1081 4314 0.905357 ATGGAAAGGAGACGGAGGTG 59.095 55.000 0.00 0.00 0.00 4.00
1082 4315 1.555533 GAATGGAAAGGAGACGGAGGT 59.444 52.381 0.00 0.00 0.00 3.85
1083 4316 1.134371 GGAATGGAAAGGAGACGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
1084 4317 1.555075 TGGAATGGAAAGGAGACGGAG 59.445 52.381 0.00 0.00 0.00 4.63
1085 4318 1.278127 GTGGAATGGAAAGGAGACGGA 59.722 52.381 0.00 0.00 0.00 4.69
1086 4319 1.679032 GGTGGAATGGAAAGGAGACGG 60.679 57.143 0.00 0.00 0.00 4.79
1087 4320 1.003118 TGGTGGAATGGAAAGGAGACG 59.997 52.381 0.00 0.00 0.00 4.18
1088 4321 2.437413 GTGGTGGAATGGAAAGGAGAC 58.563 52.381 0.00 0.00 0.00 3.36
1089 4322 1.354368 GGTGGTGGAATGGAAAGGAGA 59.646 52.381 0.00 0.00 0.00 3.71
1090 4323 1.075374 TGGTGGTGGAATGGAAAGGAG 59.925 52.381 0.00 0.00 0.00 3.69
1091 4324 1.153539 TGGTGGTGGAATGGAAAGGA 58.846 50.000 0.00 0.00 0.00 3.36
1092 4325 1.895131 CTTGGTGGTGGAATGGAAAGG 59.105 52.381 0.00 0.00 0.00 3.11
1093 4326 1.273327 GCTTGGTGGTGGAATGGAAAG 59.727 52.381 0.00 0.00 0.00 2.62
1094 4327 1.337118 GCTTGGTGGTGGAATGGAAA 58.663 50.000 0.00 0.00 0.00 3.13
1095 4328 0.187117 TGCTTGGTGGTGGAATGGAA 59.813 50.000 0.00 0.00 0.00 3.53
1096 4329 0.187117 TTGCTTGGTGGTGGAATGGA 59.813 50.000 0.00 0.00 0.00 3.41
1097 4330 1.047002 TTTGCTTGGTGGTGGAATGG 58.953 50.000 0.00 0.00 0.00 3.16
1098 4331 1.270252 GGTTTGCTTGGTGGTGGAATG 60.270 52.381 0.00 0.00 0.00 2.67
1099 4332 1.047801 GGTTTGCTTGGTGGTGGAAT 58.952 50.000 0.00 0.00 0.00 3.01
1100 4333 0.324738 TGGTTTGCTTGGTGGTGGAA 60.325 50.000 0.00 0.00 0.00 3.53
1101 4334 0.324738 TTGGTTTGCTTGGTGGTGGA 60.325 50.000 0.00 0.00 0.00 4.02
1102 4335 0.539051 TTTGGTTTGCTTGGTGGTGG 59.461 50.000 0.00 0.00 0.00 4.61
1122 4355 1.592064 GGCACATGGTTTGGTTTTGG 58.408 50.000 0.00 0.00 0.00 3.28
1127 4360 2.600173 CCGGGCACATGGTTTGGT 60.600 61.111 0.00 0.00 0.00 3.67
1128 4361 3.381136 CCCGGGCACATGGTTTGG 61.381 66.667 8.08 0.00 0.00 3.28
1129 4362 4.067913 GCCCGGGCACATGGTTTG 62.068 66.667 40.73 0.15 41.49 2.93
1242 4497 4.680237 TTGTCCTCCAGCACGGCG 62.680 66.667 4.80 4.80 33.14 6.46
1254 4509 1.891616 GACGAGGGAGAGGTTGTCC 59.108 63.158 0.00 0.00 0.00 4.02
1296 4551 1.384191 GTTGGTGGGCTTGGGAGAT 59.616 57.895 0.00 0.00 0.00 2.75
1299 4554 2.197324 GTGTTGGTGGGCTTGGGA 59.803 61.111 0.00 0.00 0.00 4.37
1306 4561 1.380515 TGTTGGTGGTGTTGGTGGG 60.381 57.895 0.00 0.00 0.00 4.61
1308 4563 2.015227 GCCTGTTGGTGGTGTTGGTG 62.015 60.000 0.00 0.00 35.27 4.17
1309 4564 1.756561 GCCTGTTGGTGGTGTTGGT 60.757 57.895 0.00 0.00 35.27 3.67
1381 4642 1.077858 GGACGTAGGAGAGGACGGT 60.078 63.158 0.00 0.00 43.32 4.83
1524 4785 2.835431 AGGTCGGAGGATGAGGCG 60.835 66.667 0.00 0.00 0.00 5.52
1527 4788 1.169661 CGAGGAGGTCGGAGGATGAG 61.170 65.000 0.00 0.00 45.58 2.90
1548 4809 3.612681 CGGTGGTGGTGGTCGAGT 61.613 66.667 0.00 0.00 0.00 4.18
1559 4820 2.043852 TGTTTTGGTGGCGGTGGT 60.044 55.556 0.00 0.00 0.00 4.16
1563 4824 1.515521 GGAGTCTGTTTTGGTGGCGG 61.516 60.000 0.00 0.00 0.00 6.13
1565 4826 1.179174 GGGGAGTCTGTTTTGGTGGC 61.179 60.000 0.00 0.00 0.00 5.01
1566 4827 0.184933 TGGGGAGTCTGTTTTGGTGG 59.815 55.000 0.00 0.00 0.00 4.61
1567 4828 1.318576 GTGGGGAGTCTGTTTTGGTG 58.681 55.000 0.00 0.00 0.00 4.17
1568 4829 0.185175 GGTGGGGAGTCTGTTTTGGT 59.815 55.000 0.00 0.00 0.00 3.67
1570 4831 1.609208 CTGGTGGGGAGTCTGTTTTG 58.391 55.000 0.00 0.00 0.00 2.44
1571 4832 0.178990 GCTGGTGGGGAGTCTGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
1572 4833 1.456287 GCTGGTGGGGAGTCTGTTT 59.544 57.895 0.00 0.00 0.00 2.83
1573 4834 2.529744 GGCTGGTGGGGAGTCTGTT 61.530 63.158 0.00 0.00 0.00 3.16
1574 4835 2.930562 GGCTGGTGGGGAGTCTGT 60.931 66.667 0.00 0.00 0.00 3.41
1585 4846 1.152546 GTTTCTTGGTGGGGCTGGT 60.153 57.895 0.00 0.00 0.00 4.00
1611 4872 1.304952 CGAGGAGGAGGAGTCTGGT 59.695 63.158 0.00 0.00 0.00 4.00
1614 4875 2.277404 GGCGAGGAGGAGGAGTCT 59.723 66.667 0.00 0.00 0.00 3.24
1645 4906 1.341209 CTTTTTGGTTGTCCTCCTGGC 59.659 52.381 0.00 0.00 34.23 4.85
1652 4913 3.819337 GGAGTAGTCCTTTTTGGTTGTCC 59.181 47.826 9.55 0.00 40.17 4.02
1665 4926 2.692817 CGAGTCGGAGGAGTAGTCC 58.307 63.158 8.73 8.73 44.33 3.85
1713 4974 2.355481 AAGTCGTCGGTGGCGAAC 60.355 61.111 0.00 0.00 40.19 3.95
1845 5106 2.808206 GGGGACGCAGGAGTATGGG 61.808 68.421 0.00 0.00 38.95 4.00
1848 5109 2.435693 GCAGGGGACGCAGGAGTAT 61.436 63.158 0.00 0.00 0.00 2.12
2070 5331 4.292178 GAGCTCGGGGATGGCGAG 62.292 72.222 0.00 0.00 0.00 5.03
2111 5375 2.445654 GCCTGGAGGAGGAGGAGG 60.446 72.222 0.00 0.00 46.33 4.30
2169 5433 2.029964 TTCTGGTTGTCGGCGTCC 59.970 61.111 6.85 6.51 0.00 4.79
2180 5444 2.048503 GCGCGTACTGGTTCTGGT 60.049 61.111 8.43 0.00 0.00 4.00
2181 5445 3.179265 CGCGCGTACTGGTTCTGG 61.179 66.667 24.19 0.00 0.00 3.86
2182 5446 3.838795 GCGCGCGTACTGGTTCTG 61.839 66.667 32.35 0.00 0.00 3.02
2183 5447 4.351938 TGCGCGCGTACTGGTTCT 62.352 61.111 32.35 0.00 0.00 3.01
2184 5448 3.838795 CTGCGCGCGTACTGGTTC 61.839 66.667 32.35 12.41 0.00 3.62
2301 5568 3.898627 CTGCTGCTGCTGCTGTTGC 62.899 63.158 27.67 16.48 39.81 4.17
2314 5581 2.255554 CTGCTGTTGCTGCTGCTG 59.744 61.111 17.00 0.77 40.48 4.41
2320 5587 2.643272 CTGGTGCTGCTGTTGCTG 59.357 61.111 0.00 0.00 40.48 4.41
2321 5588 3.292936 GCTGGTGCTGCTGTTGCT 61.293 61.111 0.00 0.00 40.48 3.91
2322 5589 3.141522 TTGCTGGTGCTGCTGTTGC 62.142 57.895 0.00 1.39 40.48 4.17
2323 5590 1.299620 GTTGCTGGTGCTGCTGTTG 60.300 57.895 0.00 0.00 40.48 3.33
2324 5591 1.321805 TTGTTGCTGGTGCTGCTGTT 61.322 50.000 0.00 0.00 40.48 3.16
2325 5592 1.753848 TTGTTGCTGGTGCTGCTGT 60.754 52.632 0.00 0.00 40.48 4.40
2334 5601 0.883153 TGCTATGCTGTTGTTGCTGG 59.117 50.000 0.00 0.00 0.00 4.85
2340 5607 2.743752 CGCGCTGCTATGCTGTTGT 61.744 57.895 5.56 0.00 0.00 3.32
2370 5640 4.209866 ATCCCCATGGGCGGCTTC 62.210 66.667 26.87 0.00 43.94 3.86
2427 5697 2.031012 TGCACGAAGGTCTGGCTG 59.969 61.111 0.00 0.00 0.00 4.85
2699 6017 9.488762 TTTTTCTCCTTATATACTGGAGTCTGA 57.511 33.333 21.32 7.97 45.46 3.27
2765 6157 5.591643 TCTTTTTATCAGTGTTCGAGCAC 57.408 39.130 23.14 23.14 39.51 4.40
2776 6168 6.644592 TGGGCGTGAAATTTTCTTTTTATCAG 59.355 34.615 10.33 0.00 0.00 2.90
2817 6209 0.105224 TTGGAACGAGGCAAAGACGA 59.895 50.000 0.00 0.00 0.00 4.20
2818 6210 1.156736 ATTGGAACGAGGCAAAGACG 58.843 50.000 0.00 0.00 0.00 4.18
2819 6211 3.643159 AAATTGGAACGAGGCAAAGAC 57.357 42.857 0.00 0.00 0.00 3.01
2826 6222 2.664916 CTGCACAAAATTGGAACGAGG 58.335 47.619 0.00 0.00 0.00 4.63
2830 6226 1.139163 CGGCTGCACAAAATTGGAAC 58.861 50.000 0.50 0.00 0.00 3.62
2859 6277 2.010145 TTGAGCAGCTTCGTATCCAC 57.990 50.000 0.00 0.00 0.00 4.02
2860 6278 2.233676 TCTTTGAGCAGCTTCGTATCCA 59.766 45.455 0.00 0.00 0.00 3.41
2861 6279 2.893637 TCTTTGAGCAGCTTCGTATCC 58.106 47.619 0.00 0.00 0.00 2.59
2862 6280 4.390297 ACTTTCTTTGAGCAGCTTCGTATC 59.610 41.667 0.00 0.00 0.00 2.24
2863 6281 4.319177 ACTTTCTTTGAGCAGCTTCGTAT 58.681 39.130 0.00 0.00 0.00 3.06
2864 6282 3.728845 ACTTTCTTTGAGCAGCTTCGTA 58.271 40.909 0.00 0.00 0.00 3.43
2865 6283 2.565841 ACTTTCTTTGAGCAGCTTCGT 58.434 42.857 0.00 0.00 0.00 3.85
2866 6284 3.002656 TCAACTTTCTTTGAGCAGCTTCG 59.997 43.478 0.00 0.00 31.68 3.79
2867 6285 4.558538 TCAACTTTCTTTGAGCAGCTTC 57.441 40.909 0.00 0.00 31.68 3.86
2880 6298 8.592998 GCTCAATCAATCATTCATTCAACTTTC 58.407 33.333 0.00 0.00 0.00 2.62
2955 6376 0.035343 TCCTCCTCGTGTCGACATCT 60.035 55.000 23.12 0.00 0.00 2.90
3001 6422 7.423844 TCCACTACTCACTCAATGTTGATAT 57.576 36.000 0.00 0.00 36.46 1.63
3002 6423 6.850752 TCCACTACTCACTCAATGTTGATA 57.149 37.500 0.00 0.00 36.46 2.15
3003 6424 5.745312 TCCACTACTCACTCAATGTTGAT 57.255 39.130 0.00 0.00 36.46 2.57
3004 6425 5.245977 TCATCCACTACTCACTCAATGTTGA 59.754 40.000 0.00 0.00 35.57 3.18
3005 6426 5.482006 TCATCCACTACTCACTCAATGTTG 58.518 41.667 0.00 0.00 0.00 3.33
3006 6427 5.745312 TCATCCACTACTCACTCAATGTT 57.255 39.130 0.00 0.00 0.00 2.71
3007 6428 5.423290 TCATCATCCACTACTCACTCAATGT 59.577 40.000 0.00 0.00 0.00 2.71
3071 6525 9.524496 AGGAAGCAAAAGCAATATGATGATATA 57.476 29.630 0.00 0.00 0.00 0.86
3072 6526 8.418597 AGGAAGCAAAAGCAATATGATGATAT 57.581 30.769 0.00 0.00 0.00 1.63
3073 6527 7.040201 GGAGGAAGCAAAAGCAATATGATGATA 60.040 37.037 0.00 0.00 0.00 2.15
3197 6662 3.766545 TGCAGATAAAAGGCAAAGGTCT 58.233 40.909 0.00 0.00 34.05 3.85
3267 6737 3.060363 GTGACAACAAGCTAATACGACGG 59.940 47.826 0.00 0.00 0.00 4.79
3335 6988 1.221840 CGGGCATAGAGGCACTGTT 59.778 57.895 0.00 0.00 46.44 3.16
3339 6992 1.068250 GAGTCGGGCATAGAGGCAC 59.932 63.158 0.00 0.00 46.44 5.01
3409 7069 4.072839 GGAAGGAAACACGAAGAAGGATT 58.927 43.478 0.00 0.00 0.00 3.01
3420 7080 2.290387 GGGAAGAGGAGGAAGGAAACAC 60.290 54.545 0.00 0.00 0.00 3.32
3452 7112 3.661648 GGTGGGCAGATGGGTGGT 61.662 66.667 0.00 0.00 0.00 4.16
3464 7124 0.237235 CAAACAATCGTCACGGTGGG 59.763 55.000 8.50 1.04 0.00 4.61
3497 7157 5.508200 TCAAAGACAAACCTAACGCAAAT 57.492 34.783 0.00 0.00 0.00 2.32
3556 7216 3.958798 GGGTTCTATAGCCTAGTGTGACA 59.041 47.826 0.00 0.00 41.39 3.58
3560 7220 1.962100 GCGGGTTCTATAGCCTAGTGT 59.038 52.381 0.00 0.00 42.48 3.55
3565 7225 1.203075 AGCTAGCGGGTTCTATAGCCT 60.203 52.381 9.55 0.00 42.48 4.58
3588 7248 5.578336 CACACACATATCCACACAGTCTTAG 59.422 44.000 0.00 0.00 0.00 2.18
3594 7254 3.681417 CAGACACACACATATCCACACAG 59.319 47.826 0.00 0.00 0.00 3.66
3614 7274 7.173907 AGACAAAAGGACATGTTGTTAGATCAG 59.826 37.037 0.00 0.00 35.67 2.90
3682 7342 5.751990 GGAGAAAAGTAGAAGAAACACACGA 59.248 40.000 0.00 0.00 0.00 4.35
3749 9081 5.998454 ATGAAACGAATTGCATAGAGAGG 57.002 39.130 0.00 0.00 0.00 3.69
3790 9128 9.665719 TGCTCTCAACAACTTGTATTCATATAA 57.334 29.630 0.00 0.00 0.00 0.98
3847 9185 8.190326 TCGTGGTGATAGGATATCATTAGTTT 57.810 34.615 4.83 0.00 0.00 2.66
3848 9186 7.451877 ACTCGTGGTGATAGGATATCATTAGTT 59.548 37.037 4.83 0.00 0.00 2.24
3849 9187 6.948886 ACTCGTGGTGATAGGATATCATTAGT 59.051 38.462 4.83 1.53 0.00 2.24
3850 9188 7.397892 ACTCGTGGTGATAGGATATCATTAG 57.602 40.000 4.83 1.05 0.00 1.73
3852 9190 7.962995 ATACTCGTGGTGATAGGATATCATT 57.037 36.000 4.83 0.00 0.00 2.57
3853 9191 9.072375 CATATACTCGTGGTGATAGGATATCAT 57.928 37.037 4.83 0.00 26.44 2.45
3854 9192 8.053355 ACATATACTCGTGGTGATAGGATATCA 58.947 37.037 4.83 0.00 26.44 2.15
3855 9193 8.453238 ACATATACTCGTGGTGATAGGATATC 57.547 38.462 0.00 0.00 26.44 1.63
3858 9196 9.562408 CTATACATATACTCGTGGTGATAGGAT 57.438 37.037 0.00 0.00 0.00 3.24
3859 9197 8.546322 ACTATACATATACTCGTGGTGATAGGA 58.454 37.037 0.00 0.00 0.00 2.94
3860 9198 8.734218 ACTATACATATACTCGTGGTGATAGG 57.266 38.462 0.00 0.00 0.00 2.57
3863 9201 9.381033 GACTACTATACATATACTCGTGGTGAT 57.619 37.037 0.00 0.00 0.00 3.06
3864 9202 8.370182 TGACTACTATACATATACTCGTGGTGA 58.630 37.037 0.00 0.00 0.00 4.02
3865 9203 8.543862 TGACTACTATACATATACTCGTGGTG 57.456 38.462 0.00 0.00 0.00 4.17
3866 9204 9.217278 CTTGACTACTATACATATACTCGTGGT 57.783 37.037 0.00 0.00 0.00 4.16
3867 9205 9.433153 TCTTGACTACTATACATATACTCGTGG 57.567 37.037 0.00 0.00 0.00 4.94
3869 9207 9.434420 GGTCTTGACTACTATACATATACTCGT 57.566 37.037 0.61 0.00 0.00 4.18
3870 9208 8.881743 GGGTCTTGACTACTATACATATACTCG 58.118 40.741 0.61 0.00 0.00 4.18
3871 9209 9.736414 TGGGTCTTGACTACTATACATATACTC 57.264 37.037 0.61 0.00 0.00 2.59
3872 9210 9.517868 GTGGGTCTTGACTACTATACATATACT 57.482 37.037 0.61 0.00 0.00 2.12
3873 9211 9.293404 TGTGGGTCTTGACTACTATACATATAC 57.707 37.037 0.61 0.00 0.00 1.47
3874 9212 9.871175 TTGTGGGTCTTGACTACTATACATATA 57.129 33.333 0.61 0.00 0.00 0.86
3875 9213 8.777578 TTGTGGGTCTTGACTACTATACATAT 57.222 34.615 0.61 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.