Multiple sequence alignment - TraesCS3A01G537500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G537500 chr3A 100.000 6039 0 0 1 6039 749235190 749241228 0.000000e+00 11153.0
1 TraesCS3A01G537500 chr3D 97.371 1940 42 5 1534 3467 613609052 613610988 0.000000e+00 3291.0
2 TraesCS3A01G537500 chr3D 95.740 1291 31 13 4468 5746 613612115 613613393 0.000000e+00 2058.0
3 TraesCS3A01G537500 chr3D 97.514 1086 22 2 431 1512 613607971 613609055 0.000000e+00 1851.0
4 TraesCS3A01G537500 chr3D 91.988 986 49 6 3466 4442 613611150 613612114 0.000000e+00 1356.0
5 TraesCS3A01G537500 chr3D 94.796 442 13 4 1 433 613607279 613607719 0.000000e+00 680.0
6 TraesCS3A01G537500 chr3D 93.559 295 16 2 5745 6039 162519636 162519345 2.580000e-118 436.0
7 TraesCS3A01G537500 chr1B 85.886 1828 211 24 725 2514 659362453 659360635 0.000000e+00 1903.0
8 TraesCS3A01G537500 chr1B 79.861 432 63 11 2501 2932 659357253 659356846 1.650000e-75 294.0
9 TraesCS3A01G537500 chr3B 89.130 598 59 3 725 1316 823088123 823087526 0.000000e+00 739.0
10 TraesCS3A01G537500 chr3B 76.651 878 164 23 1429 2278 823087411 823086547 1.190000e-121 448.0
11 TraesCS3A01G537500 chr1A 91.864 295 23 1 5745 6039 301133137 301132844 1.570000e-110 411.0
12 TraesCS3A01G537500 chr5D 91.216 296 25 1 5745 6039 314877621 314877326 9.430000e-108 401.0
13 TraesCS3A01G537500 chr5D 83.168 101 12 4 5239 5337 59777513 59777416 3.000000e-13 87.9
14 TraesCS3A01G537500 chr5D 87.692 65 6 2 5744 5806 134471001 134470937 2.330000e-09 75.0
15 TraesCS3A01G537500 chr7D 90.972 288 26 0 5752 6039 638494834 638494547 7.340000e-104 388.0
16 TraesCS3A01G537500 chr7D 90.102 293 29 0 5744 6036 132198527 132198819 1.230000e-101 381.0
17 TraesCS3A01G537500 chr1D 87.625 299 32 3 5745 6039 463067678 463067381 5.800000e-90 342.0
18 TraesCS3A01G537500 chr5A 97.015 67 2 0 5680 5746 563466138 563466204 4.950000e-21 113.0
19 TraesCS3A01G537500 chr7B 95.522 67 3 0 5680 5746 516487361 516487427 2.300000e-19 108.0
20 TraesCS3A01G537500 chr2D 94.340 53 0 2 5745 5796 156558425 156558475 1.800000e-10 78.7
21 TraesCS3A01G537500 chr5B 88.525 61 6 1 5747 5806 145824844 145824784 8.400000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G537500 chr3A 749235190 749241228 6038 False 11153.0 11153 100.0000 1 6039 1 chr3A.!!$F1 6038
1 TraesCS3A01G537500 chr3D 613607279 613613393 6114 False 1847.2 3291 95.4818 1 5746 5 chr3D.!!$F1 5745
2 TraesCS3A01G537500 chr1B 659356846 659362453 5607 True 1098.5 1903 82.8735 725 2932 2 chr1B.!!$R1 2207
3 TraesCS3A01G537500 chr3B 823086547 823088123 1576 True 593.5 739 82.8905 725 2278 2 chr3B.!!$R1 1553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.890996 AAGCAAGAGGACCTTTGGCG 60.891 55.0 5.76 0.00 31.33 5.69 F
1026 1297 0.596577 CCTCGTCGGTGAAGAGTGAA 59.403 55.0 8.54 0.00 36.66 3.18 F
1496 1815 1.179152 TCAGGACGAAGCACCGATTA 58.821 50.0 4.78 0.00 32.85 1.75 F
2803 6554 0.254178 GGAGCTGGCAAGATTCTGGA 59.746 55.0 0.00 0.00 0.00 3.86 F
4293 8222 0.028770 AACGCACACACAATTGTCCG 59.971 50.0 8.48 8.98 31.66 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 1874 1.242076 GACTCAGCACATGCAAACCT 58.758 50.0 6.64 0.0 45.16 3.50 R
2778 6529 0.992431 ATCTTGCCAGCTCCTCCCAT 60.992 55.0 0.00 0.0 0.00 4.00 R
3440 7197 0.972134 TTGGCCAAAAATGCATCGGA 59.028 45.0 17.98 0.0 0.00 4.55 R
4455 8384 0.178947 ACTCGGAGGAGATGGGGATC 60.179 60.0 10.23 0.0 43.27 3.36 R
5917 9858 0.038166 ACATGCATTGAGACCCCGTT 59.962 50.0 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.136791 TCCGATCCATTCCTCCAGC 58.863 57.895 0.00 0.00 0.00 4.85
32 33 2.301346 CTCCAGCCAACAAAGACACTT 58.699 47.619 0.00 0.00 0.00 3.16
54 55 8.415553 CACTTATTGGGATCATGCAAATTAAGA 58.584 33.333 0.00 0.00 0.00 2.10
118 119 1.485895 AGAATGAGAGGAGGCTTCAGC 59.514 52.381 0.00 0.00 41.14 4.26
122 123 0.975040 GAGAGGAGGCTTCAGCTGGA 60.975 60.000 15.13 3.47 41.70 3.86
232 233 3.838317 ACACATGGCTGGAGTAAGAGTAA 59.162 43.478 0.00 0.00 0.00 2.24
279 280 0.890996 AAGCAAGAGGACCTTTGGCG 60.891 55.000 5.76 0.00 31.33 5.69
316 323 2.824936 CACACAGACAGACAGATCTCCT 59.175 50.000 0.00 0.00 30.42 3.69
367 374 1.004745 CCTGAAGCAAAGCCTAGGGAA 59.995 52.381 11.72 0.00 0.00 3.97
377 384 1.333636 GCCTAGGGAAGAGCAGCAGA 61.334 60.000 11.72 0.00 0.00 4.26
380 387 2.106566 CTAGGGAAGAGCAGCAGAAGA 58.893 52.381 0.00 0.00 0.00 2.87
489 757 7.591426 GTGAGCAACTATGTTTGTTTAGAAAGG 59.409 37.037 0.00 0.00 0.00 3.11
565 833 1.812571 ACAGGGCATACTCGCAAAAAG 59.187 47.619 0.00 0.00 0.00 2.27
569 837 3.763897 AGGGCATACTCGCAAAAAGAAAT 59.236 39.130 0.00 0.00 0.00 2.17
703 971 6.380274 AGCAATGTTAAGCTCACCTAGTAGTA 59.620 38.462 0.00 0.00 36.00 1.82
740 1008 5.781210 GGTAGTCTTACTATACCCACACC 57.219 47.826 0.00 0.00 32.65 4.16
791 1062 1.344191 GGAGAAGGAGGCATGGAGCT 61.344 60.000 0.00 0.00 44.79 4.09
1026 1297 0.596577 CCTCGTCGGTGAAGAGTGAA 59.403 55.000 8.54 0.00 36.66 3.18
1069 1340 3.589654 TTGCTCACCCTCTTCGGCG 62.590 63.158 0.00 0.00 0.00 6.46
1173 1444 9.831682 TGTGGATATGTCCTACTAATTGGTATA 57.168 33.333 10.16 0.00 45.32 1.47
1313 1587 9.755804 TGTAAACAAATTGATTGCTGATTACAA 57.244 25.926 0.00 0.00 43.13 2.41
1377 1681 8.757982 TTATGAGAGATTACCCTAAGTACGTT 57.242 34.615 0.00 0.00 0.00 3.99
1487 1806 2.417924 CCCTCACTTCATCAGGACGAAG 60.418 54.545 3.77 3.77 43.48 3.79
1496 1815 1.179152 TCAGGACGAAGCACCGATTA 58.821 50.000 4.78 0.00 32.85 1.75
1555 1874 1.732809 TGTTGCAACGACGTTTCTTCA 59.267 42.857 23.79 7.16 0.00 3.02
1560 1879 2.223180 GCAACGACGTTTCTTCAGGTTT 60.223 45.455 11.24 0.00 0.00 3.27
1635 1962 2.099756 GCTTGTACAAAGGGATGATGGC 59.900 50.000 10.03 1.70 0.00 4.40
1736 2074 6.313519 TGCCTTCCTTCATTACTATGAGTT 57.686 37.500 0.00 0.00 41.60 3.01
1858 2196 2.400399 ACACTATTGTTGTGACGACCG 58.600 47.619 0.00 0.00 38.65 4.79
1904 2242 7.068839 CACTCTAGTAATACTGGTCTCCATTGT 59.931 40.741 2.68 0.00 30.82 2.71
2035 2379 8.598075 GGTTTAAAGCATTTATGAGCAAGATTG 58.402 33.333 12.42 0.00 40.76 2.67
2409 2765 3.991773 GTCACATTGCGACTTGTTACCTA 59.008 43.478 0.00 0.00 0.00 3.08
2682 6433 2.742053 CTCAACAACAGGGGTGATTACG 59.258 50.000 0.00 0.00 0.00 3.18
2778 6529 0.470766 ACCGGCCTGTGTTTGTTCTA 59.529 50.000 0.00 0.00 0.00 2.10
2803 6554 0.254178 GGAGCTGGCAAGATTCTGGA 59.746 55.000 0.00 0.00 0.00 3.86
2882 6633 1.597027 CACGGGGTGGTGAGTTCAC 60.597 63.158 3.67 3.67 45.72 3.18
2913 6664 0.964358 GGGCTCTGCTGTTTCATGCT 60.964 55.000 0.00 0.00 0.00 3.79
2955 6706 3.595709 TTCGAGCAAAAACAGGTAACG 57.404 42.857 0.00 0.00 46.39 3.18
2958 6709 1.335496 GAGCAAAAACAGGTAACGCCA 59.665 47.619 0.00 0.00 46.39 5.69
3031 6786 7.034685 TGCTCGATCATTCATTCATTCAATT 57.965 32.000 0.00 0.00 0.00 2.32
3212 6967 6.179906 TCTGGGGCATAAATTTTTGTTTCA 57.820 33.333 9.87 5.55 0.00 2.69
3235 6990 5.653255 AGGAATTAACACCCATCTAGCAT 57.347 39.130 0.00 0.00 0.00 3.79
3305 7062 7.508977 TCAAACATTTTCCCTCTACCTCATTTT 59.491 33.333 0.00 0.00 0.00 1.82
3371 7128 2.203394 CCCCTCCCGCATTCATGG 60.203 66.667 0.00 0.00 0.00 3.66
3446 7203 3.081061 TGGAAATCCAACTTGTCCGATG 58.919 45.455 0.00 0.00 44.35 3.84
3509 7431 0.313672 GCAAGATGTGCGGAAAACCA 59.686 50.000 0.00 0.00 45.10 3.67
3519 7441 3.550275 GTGCGGAAAACCACTTCTTTTTC 59.450 43.478 0.00 0.00 39.84 2.29
3556 7478 2.447429 TGGGTGAAATGGGTTTCTACCA 59.553 45.455 16.65 13.91 46.96 3.25
3610 7532 1.017387 GGTCGAGCCAATGGAATGTC 58.983 55.000 2.05 0.00 37.17 3.06
3611 7533 1.678728 GGTCGAGCCAATGGAATGTCA 60.679 52.381 2.05 0.00 37.17 3.58
3691 7613 0.903942 CCCACCACCCATCCATTTTG 59.096 55.000 0.00 0.00 0.00 2.44
3739 7661 2.496817 CGCCAGGCTCTAGGTCAC 59.503 66.667 10.54 0.00 0.00 3.67
3757 7679 0.172803 ACGTCCACCGCTTGACTATC 59.827 55.000 0.00 0.00 41.42 2.08
3761 7683 0.866061 CCACCGCTTGACTATCGACG 60.866 60.000 0.00 0.00 0.00 5.12
3848 7770 1.084652 ACCACCTCCCCCATCATCA 59.915 57.895 0.00 0.00 0.00 3.07
3849 7771 1.281925 ACCACCTCCCCCATCATCAC 61.282 60.000 0.00 0.00 0.00 3.06
3883 7810 4.794439 CGGCGCCTCACATGTCGA 62.794 66.667 26.68 3.75 0.00 4.20
3903 7830 2.033194 GCCGCCACTGAAGTACCAC 61.033 63.158 0.00 0.00 0.00 4.16
3958 7885 7.214381 GGCGCATATATAAGATATGTAACCCA 58.786 38.462 10.83 0.00 35.14 4.51
4024 7951 3.693085 CCAATGTAGAAGAAGCAGTGCAT 59.307 43.478 19.20 4.82 0.00 3.96
4060 7987 0.246086 CGCTCAGCTTCTTCTGGAGT 59.754 55.000 0.00 0.00 34.91 3.85
4062 7989 2.733858 CGCTCAGCTTCTTCTGGAGTAC 60.734 54.545 0.00 0.00 34.91 2.73
4065 7992 1.546476 CAGCTTCTTCTGGAGTACGGT 59.454 52.381 0.00 0.00 0.00 4.83
4092 8019 1.718280 AACTTCCTCCTCGACACCTT 58.282 50.000 0.00 0.00 0.00 3.50
4093 8020 2.599408 ACTTCCTCCTCGACACCTTA 57.401 50.000 0.00 0.00 0.00 2.69
4116 8043 4.496336 GGCCGCCATCTTGCCTCT 62.496 66.667 3.91 0.00 42.01 3.69
4158 8085 0.829333 GCTGAGGAGAAGGAGCATCA 59.171 55.000 0.00 0.00 36.25 3.07
4193 8120 4.263209 TTGTGGCCAAGCGCGTTG 62.263 61.111 7.24 11.05 38.94 4.10
4253 8182 3.555795 GCAGATCCTCACTCAGAACAACA 60.556 47.826 0.00 0.00 0.00 3.33
4285 8214 1.300311 CGTAGGGAACGCACACACA 60.300 57.895 0.00 0.00 46.10 3.72
4289 8218 0.667993 AGGGAACGCACACACAATTG 59.332 50.000 3.24 3.24 0.00 2.32
4291 8220 1.599419 GGGAACGCACACACAATTGTC 60.599 52.381 8.48 0.00 31.66 3.18
4292 8221 1.599419 GGAACGCACACACAATTGTCC 60.599 52.381 8.48 0.00 31.66 4.02
4293 8222 0.028770 AACGCACACACAATTGTCCG 59.971 50.000 8.48 8.98 31.66 4.79
4294 8223 1.725625 CGCACACACAATTGTCCGC 60.726 57.895 8.48 7.93 31.66 5.54
4295 8224 1.725625 GCACACACAATTGTCCGCG 60.726 57.895 8.48 0.00 31.66 6.46
4296 8225 1.938125 CACACACAATTGTCCGCGA 59.062 52.632 8.23 0.00 31.66 5.87
4297 8226 0.110688 CACACACAATTGTCCGCGAG 60.111 55.000 8.23 0.00 31.66 5.03
4298 8227 1.154413 CACACAATTGTCCGCGAGC 60.154 57.895 8.23 0.00 31.66 5.03
4299 8228 1.596752 ACACAATTGTCCGCGAGCA 60.597 52.632 8.23 2.39 0.00 4.26
4300 8229 1.154413 CACAATTGTCCGCGAGCAC 60.154 57.895 8.23 1.05 0.00 4.40
4301 8230 2.325082 ACAATTGTCCGCGAGCACC 61.325 57.895 8.23 0.00 0.00 5.01
4302 8231 3.118454 AATTGTCCGCGAGCACCG 61.118 61.111 8.23 0.00 42.21 4.94
4311 8240 2.951745 CGAGCACCGCGAGATCAC 60.952 66.667 8.23 0.00 0.00 3.06
4342 8271 0.526524 CCGAGCGTGAGGAGATGTTC 60.527 60.000 0.00 0.00 0.00 3.18
4389 8318 1.407258 CGAGGAGGAGATGGACAACTC 59.593 57.143 1.40 1.40 0.00 3.01
4429 8358 2.663196 GCCAACTACCACGAGGCT 59.337 61.111 0.00 0.00 42.01 4.58
4438 8367 4.785453 CACGAGGCTGGCCCCTTC 62.785 72.222 8.11 0.00 34.69 3.46
4459 8388 4.434483 GGGGGTTGGTGTTGATCC 57.566 61.111 0.00 0.00 0.00 3.36
4460 8389 1.304962 GGGGGTTGGTGTTGATCCC 60.305 63.158 0.00 0.00 37.59 3.85
4461 8390 4.434483 GGGTTGGTGTTGATCCCC 57.566 61.111 0.00 0.00 32.66 4.81
4462 8391 1.462928 GGGTTGGTGTTGATCCCCA 59.537 57.895 0.00 0.00 32.66 4.96
4463 8392 0.041090 GGGTTGGTGTTGATCCCCAT 59.959 55.000 0.00 0.00 32.66 4.00
4464 8393 1.474330 GGTTGGTGTTGATCCCCATC 58.526 55.000 0.00 0.00 0.00 3.51
4465 8394 1.005924 GGTTGGTGTTGATCCCCATCT 59.994 52.381 0.00 0.00 0.00 2.90
4466 8395 2.369394 GTTGGTGTTGATCCCCATCTC 58.631 52.381 0.00 0.00 0.00 2.75
4512 8441 6.126568 GAGTAGAGCTCCTTTGTACTGTAG 57.873 45.833 15.19 0.00 38.27 2.74
4642 8571 8.929827 CATTGTTTAATTATGCAATGGAGTCA 57.070 30.769 22.12 0.00 42.38 3.41
4682 8611 9.645059 TTGAAATGAACTTGTGTGACAAAATTA 57.355 25.926 0.00 0.00 37.69 1.40
4808 8737 6.488769 TTTGAGGGATCGGCTAAAGTAATA 57.511 37.500 0.00 0.00 0.00 0.98
4945 8874 9.322769 TCCTTCTTTTTCCTTACATACTAGACT 57.677 33.333 0.00 0.00 0.00 3.24
4991 8926 9.869844 CAGCTAGAAATATAACTTGTAATGTGC 57.130 33.333 0.00 0.00 0.00 4.57
5002 8937 6.603940 ACTTGTAATGTGCATTAATTGGGT 57.396 33.333 6.24 0.87 35.30 4.51
5039 8974 0.246635 CCTACGGGAACACTGGTGAG 59.753 60.000 7.78 0.00 33.58 3.51
5082 9017 2.746362 CCACTGAGCTCATTGAAAGTCC 59.254 50.000 29.77 0.00 0.00 3.85
5086 9021 1.734465 GAGCTCATTGAAAGTCCCACG 59.266 52.381 9.40 0.00 0.00 4.94
5138 9073 6.844696 TGCTCGGATTTTACTCATATTGTC 57.155 37.500 0.00 0.00 0.00 3.18
5144 9079 8.974408 TCGGATTTTACTCATATTGTCGTAATG 58.026 33.333 0.00 0.00 0.00 1.90
5177 9112 0.112218 TGTAATGCAAGCCTGTGGGT 59.888 50.000 0.00 0.00 33.45 4.51
5240 9179 3.260632 GGATTTGGGGTTTGTGCAAGTAT 59.739 43.478 0.00 0.00 0.00 2.12
5246 9185 4.835615 TGGGGTTTGTGCAAGTATACAAAT 59.164 37.500 5.50 0.00 45.28 2.32
5287 9226 6.321945 TGTGTGTAAATTATACTAGAGCGGGA 59.678 38.462 0.00 0.00 0.00 5.14
5291 9230 9.269453 GTGTAAATTATACTAGAGCGGGAAAAT 57.731 33.333 0.00 0.00 0.00 1.82
5438 9377 1.551883 GCAAGGCCACCAATTCATTCT 59.448 47.619 5.01 0.00 0.00 2.40
5632 9573 6.828785 GCCCTATATAACCGGAATGAATGAAT 59.171 38.462 9.46 0.00 0.00 2.57
5633 9574 7.201732 GCCCTATATAACCGGAATGAATGAATG 60.202 40.741 9.46 0.00 0.00 2.67
5684 9625 8.789825 TTTAAACACAACTAGTTGGTACTTCA 57.210 30.769 33.11 13.93 44.45 3.02
5746 9687 0.675633 GGTGCAATGTGGCAGAGTTT 59.324 50.000 0.00 0.00 45.96 2.66
5747 9688 1.069049 GGTGCAATGTGGCAGAGTTTT 59.931 47.619 0.00 0.00 45.96 2.43
5748 9689 2.483538 GGTGCAATGTGGCAGAGTTTTT 60.484 45.455 0.00 0.00 45.96 1.94
5770 9711 4.953781 TTTGAAAGATCCAGGGATTCCT 57.046 40.909 1.69 0.00 46.26 3.36
5781 9722 3.479866 AGGGATTCCTGGCTTTTCATT 57.520 42.857 2.01 0.00 42.98 2.57
5782 9723 3.102204 AGGGATTCCTGGCTTTTCATTG 58.898 45.455 2.01 0.00 42.98 2.82
5783 9724 3.099141 GGGATTCCTGGCTTTTCATTGA 58.901 45.455 2.01 0.00 0.00 2.57
5784 9725 3.708121 GGGATTCCTGGCTTTTCATTGAT 59.292 43.478 2.01 0.00 0.00 2.57
5785 9726 4.162888 GGGATTCCTGGCTTTTCATTGATT 59.837 41.667 2.01 0.00 0.00 2.57
5786 9727 5.338626 GGGATTCCTGGCTTTTCATTGATTT 60.339 40.000 2.01 0.00 0.00 2.17
5787 9728 6.127083 GGGATTCCTGGCTTTTCATTGATTTA 60.127 38.462 2.01 0.00 0.00 1.40
5788 9729 6.982724 GGATTCCTGGCTTTTCATTGATTTAG 59.017 38.462 0.00 0.00 0.00 1.85
5789 9730 5.329035 TCCTGGCTTTTCATTGATTTAGC 57.671 39.130 6.62 6.62 0.00 3.09
5790 9731 4.771577 TCCTGGCTTTTCATTGATTTAGCA 59.228 37.500 13.66 3.94 0.00 3.49
5791 9732 5.105635 TCCTGGCTTTTCATTGATTTAGCAG 60.106 40.000 13.66 10.06 0.00 4.24
5792 9733 5.105635 CCTGGCTTTTCATTGATTTAGCAGA 60.106 40.000 13.66 3.48 0.00 4.26
5793 9734 5.957798 TGGCTTTTCATTGATTTAGCAGAG 58.042 37.500 13.66 0.00 0.00 3.35
5794 9735 5.711506 TGGCTTTTCATTGATTTAGCAGAGA 59.288 36.000 13.66 0.00 0.00 3.10
5795 9736 6.127814 TGGCTTTTCATTGATTTAGCAGAGAG 60.128 38.462 13.66 0.00 0.00 3.20
5796 9737 5.742926 GCTTTTCATTGATTTAGCAGAGAGC 59.257 40.000 9.15 0.00 46.19 4.09
5808 9749 1.334243 GCAGAGAGCAATGGAGAATGC 59.666 52.381 0.00 0.00 44.79 3.56
5809 9750 2.640184 CAGAGAGCAATGGAGAATGCA 58.360 47.619 0.00 0.00 44.95 3.96
5810 9751 3.014623 CAGAGAGCAATGGAGAATGCAA 58.985 45.455 0.00 0.00 42.43 4.08
5811 9752 3.442625 CAGAGAGCAATGGAGAATGCAAA 59.557 43.478 0.00 0.00 42.43 3.68
5812 9753 3.442977 AGAGAGCAATGGAGAATGCAAAC 59.557 43.478 0.00 0.00 42.43 2.93
5813 9754 3.159472 AGAGCAATGGAGAATGCAAACA 58.841 40.909 0.00 0.00 42.43 2.83
5814 9755 3.767673 AGAGCAATGGAGAATGCAAACAT 59.232 39.130 0.00 0.00 42.43 2.71
5815 9756 3.857052 AGCAATGGAGAATGCAAACATG 58.143 40.909 0.00 0.00 42.43 3.21
5816 9757 2.933906 GCAATGGAGAATGCAAACATGG 59.066 45.455 0.00 0.00 42.43 3.66
5817 9758 2.933906 CAATGGAGAATGCAAACATGGC 59.066 45.455 0.00 0.00 42.43 4.40
5818 9759 0.527113 TGGAGAATGCAAACATGGCG 59.473 50.000 0.00 0.00 36.36 5.69
5819 9760 0.179129 GGAGAATGCAAACATGGCGG 60.179 55.000 0.00 0.00 36.36 6.13
5820 9761 0.179129 GAGAATGCAAACATGGCGGG 60.179 55.000 0.00 0.00 36.36 6.13
5821 9762 1.153588 GAATGCAAACATGGCGGGG 60.154 57.895 0.00 0.00 36.36 5.73
5822 9763 2.576643 GAATGCAAACATGGCGGGGG 62.577 60.000 0.00 0.00 36.36 5.40
5823 9764 3.903281 ATGCAAACATGGCGGGGGT 62.903 57.895 0.00 0.00 34.35 4.95
5824 9765 4.067913 GCAAACATGGCGGGGGTG 62.068 66.667 0.00 0.00 0.00 4.61
5825 9766 2.282816 CAAACATGGCGGGGGTGA 60.283 61.111 0.00 0.00 0.00 4.02
5826 9767 2.282887 AAACATGGCGGGGGTGAC 60.283 61.111 0.00 0.00 0.00 3.67
5848 9789 2.906354 CGTAGGTCAAGGAATGAAGGG 58.094 52.381 0.00 0.00 40.50 3.95
5849 9790 2.500098 CGTAGGTCAAGGAATGAAGGGA 59.500 50.000 0.00 0.00 40.50 4.20
5850 9791 3.055385 CGTAGGTCAAGGAATGAAGGGAA 60.055 47.826 0.00 0.00 40.50 3.97
5851 9792 4.564821 CGTAGGTCAAGGAATGAAGGGAAA 60.565 45.833 0.00 0.00 40.50 3.13
5852 9793 4.469469 AGGTCAAGGAATGAAGGGAAAA 57.531 40.909 0.00 0.00 40.50 2.29
5853 9794 4.411013 AGGTCAAGGAATGAAGGGAAAAG 58.589 43.478 0.00 0.00 40.50 2.27
5854 9795 4.106341 AGGTCAAGGAATGAAGGGAAAAGA 59.894 41.667 0.00 0.00 40.50 2.52
5855 9796 4.832823 GGTCAAGGAATGAAGGGAAAAGAA 59.167 41.667 0.00 0.00 40.50 2.52
5856 9797 5.304357 GGTCAAGGAATGAAGGGAAAAGAAA 59.696 40.000 0.00 0.00 40.50 2.52
5857 9798 6.183360 GGTCAAGGAATGAAGGGAAAAGAAAA 60.183 38.462 0.00 0.00 40.50 2.29
5858 9799 6.701841 GTCAAGGAATGAAGGGAAAAGAAAAC 59.298 38.462 0.00 0.00 40.50 2.43
5859 9800 6.382570 TCAAGGAATGAAGGGAAAAGAAAACA 59.617 34.615 0.00 0.00 34.30 2.83
5860 9801 6.806668 AGGAATGAAGGGAAAAGAAAACAA 57.193 33.333 0.00 0.00 0.00 2.83
5861 9802 7.194112 AGGAATGAAGGGAAAAGAAAACAAA 57.806 32.000 0.00 0.00 0.00 2.83
5862 9803 7.275183 AGGAATGAAGGGAAAAGAAAACAAAG 58.725 34.615 0.00 0.00 0.00 2.77
5863 9804 7.125659 AGGAATGAAGGGAAAAGAAAACAAAGA 59.874 33.333 0.00 0.00 0.00 2.52
5864 9805 7.439356 GGAATGAAGGGAAAAGAAAACAAAGAG 59.561 37.037 0.00 0.00 0.00 2.85
5865 9806 7.660030 ATGAAGGGAAAAGAAAACAAAGAGA 57.340 32.000 0.00 0.00 0.00 3.10
5866 9807 7.475137 TGAAGGGAAAAGAAAACAAAGAGAA 57.525 32.000 0.00 0.00 0.00 2.87
5867 9808 7.902087 TGAAGGGAAAAGAAAACAAAGAGAAA 58.098 30.769 0.00 0.00 0.00 2.52
5868 9809 8.371699 TGAAGGGAAAAGAAAACAAAGAGAAAA 58.628 29.630 0.00 0.00 0.00 2.29
5869 9810 9.383519 GAAGGGAAAAGAAAACAAAGAGAAAAT 57.616 29.630 0.00 0.00 0.00 1.82
5871 9812 9.817809 AGGGAAAAGAAAACAAAGAGAAAATAC 57.182 29.630 0.00 0.00 0.00 1.89
5872 9813 9.594478 GGGAAAAGAAAACAAAGAGAAAATACA 57.406 29.630 0.00 0.00 0.00 2.29
5887 9828 9.713713 AGAGAAAATACAAAAACTAGAGGTCTC 57.286 33.333 0.00 0.00 0.00 3.36
5888 9829 9.490379 GAGAAAATACAAAAACTAGAGGTCTCA 57.510 33.333 0.00 0.00 0.00 3.27
5889 9830 9.847224 AGAAAATACAAAAACTAGAGGTCTCAA 57.153 29.630 0.00 0.00 0.00 3.02
5892 9833 9.628500 AAATACAAAAACTAGAGGTCTCAAAGT 57.372 29.630 0.00 1.21 31.97 2.66
5893 9834 9.628500 AATACAAAAACTAGAGGTCTCAAAGTT 57.372 29.630 0.00 10.81 38.71 2.66
5895 9836 8.434733 ACAAAAACTAGAGGTCTCAAAGTTAC 57.565 34.615 14.69 0.00 37.20 2.50
5896 9837 8.044908 ACAAAAACTAGAGGTCTCAAAGTTACA 58.955 33.333 14.69 0.00 37.20 2.41
5897 9838 9.057089 CAAAAACTAGAGGTCTCAAAGTTACAT 57.943 33.333 14.69 6.38 37.20 2.29
5901 9842 9.482175 AACTAGAGGTCTCAAAGTTACATATCT 57.518 33.333 13.47 0.00 36.76 1.98
5902 9843 9.127277 ACTAGAGGTCTCAAAGTTACATATCTC 57.873 37.037 0.00 0.00 0.00 2.75
5903 9844 7.354751 AGAGGTCTCAAAGTTACATATCTCC 57.645 40.000 0.55 0.00 0.00 3.71
5904 9845 6.325286 AGAGGTCTCAAAGTTACATATCTCCC 59.675 42.308 0.55 0.00 0.00 4.30
5905 9846 5.069251 AGGTCTCAAAGTTACATATCTCCCG 59.931 44.000 0.00 0.00 0.00 5.14
5906 9847 5.068723 GGTCTCAAAGTTACATATCTCCCGA 59.931 44.000 0.00 0.00 0.00 5.14
5907 9848 5.978322 GTCTCAAAGTTACATATCTCCCGAC 59.022 44.000 0.00 0.00 0.00 4.79
5908 9849 5.655090 TCTCAAAGTTACATATCTCCCGACA 59.345 40.000 0.00 0.00 0.00 4.35
5909 9850 6.323996 TCTCAAAGTTACATATCTCCCGACAT 59.676 38.462 0.00 0.00 0.00 3.06
5910 9851 6.280643 TCAAAGTTACATATCTCCCGACATG 58.719 40.000 0.00 0.00 0.00 3.21
5911 9852 5.871396 AAGTTACATATCTCCCGACATGT 57.129 39.130 0.00 0.00 35.81 3.21
5912 9853 5.455056 AGTTACATATCTCCCGACATGTC 57.545 43.478 16.21 16.21 33.78 3.06
5913 9854 4.281182 AGTTACATATCTCCCGACATGTCC 59.719 45.833 20.03 2.90 33.78 4.02
5914 9855 1.971357 ACATATCTCCCGACATGTCCC 59.029 52.381 20.03 0.00 0.00 4.46
5915 9856 1.276421 CATATCTCCCGACATGTCCCC 59.724 57.143 20.03 0.00 0.00 4.81
5916 9857 0.826256 TATCTCCCGACATGTCCCCG 60.826 60.000 20.03 9.29 0.00 5.73
5917 9858 2.583298 ATCTCCCGACATGTCCCCGA 62.583 60.000 20.03 11.36 0.00 5.14
5918 9859 2.284039 TCCCGACATGTCCCCGAA 60.284 61.111 20.03 0.00 0.00 4.30
5919 9860 2.125269 CCCGACATGTCCCCGAAC 60.125 66.667 20.03 0.00 0.00 3.95
5920 9861 2.508439 CCGACATGTCCCCGAACG 60.508 66.667 20.03 7.05 0.00 3.95
5921 9862 2.508439 CGACATGTCCCCGAACGG 60.508 66.667 20.03 6.25 0.00 4.44
5931 9872 4.201951 CCGAACGGGGTCTCAATG 57.798 61.111 5.25 0.00 0.00 2.82
5932 9873 2.106683 CCGAACGGGGTCTCAATGC 61.107 63.158 5.25 0.00 0.00 3.56
5933 9874 1.375396 CGAACGGGGTCTCAATGCA 60.375 57.895 0.00 0.00 0.00 3.96
5934 9875 0.744414 CGAACGGGGTCTCAATGCAT 60.744 55.000 0.00 0.00 0.00 3.96
5935 9876 0.734889 GAACGGGGTCTCAATGCATG 59.265 55.000 0.00 0.00 0.00 4.06
5936 9877 0.038166 AACGGGGTCTCAATGCATGT 59.962 50.000 0.00 0.00 0.00 3.21
5937 9878 0.908910 ACGGGGTCTCAATGCATGTA 59.091 50.000 0.00 0.00 0.00 2.29
5938 9879 1.134401 ACGGGGTCTCAATGCATGTAG 60.134 52.381 0.00 0.45 0.00 2.74
5939 9880 1.312815 GGGGTCTCAATGCATGTAGC 58.687 55.000 0.00 0.00 45.96 3.58
5963 9904 3.737172 GGCGCGCCACAAGTTGAT 61.737 61.111 43.55 0.00 35.81 2.57
5964 9905 2.202349 GCGCGCCACAAGTTGATC 60.202 61.111 23.24 0.00 0.00 2.92
5965 9906 2.096406 CGCGCCACAAGTTGATCG 59.904 61.111 10.54 10.34 0.00 3.69
5966 9907 2.202349 GCGCCACAAGTTGATCGC 60.202 61.111 10.54 15.96 38.92 4.58
5967 9908 2.680913 GCGCCACAAGTTGATCGCT 61.681 57.895 23.09 0.00 41.10 4.93
5968 9909 1.421485 CGCCACAAGTTGATCGCTC 59.579 57.895 10.54 0.00 0.00 5.03
5969 9910 1.016130 CGCCACAAGTTGATCGCTCT 61.016 55.000 10.54 0.00 0.00 4.09
5970 9911 1.160137 GCCACAAGTTGATCGCTCTT 58.840 50.000 10.54 0.00 0.00 2.85
5971 9912 1.129437 GCCACAAGTTGATCGCTCTTC 59.871 52.381 10.54 0.00 0.00 2.87
5972 9913 2.693069 CCACAAGTTGATCGCTCTTCT 58.307 47.619 10.54 0.00 0.00 2.85
5973 9914 2.414481 CCACAAGTTGATCGCTCTTCTG 59.586 50.000 10.54 0.00 0.00 3.02
5974 9915 3.320626 CACAAGTTGATCGCTCTTCTGA 58.679 45.455 10.54 0.00 0.00 3.27
5975 9916 3.931468 CACAAGTTGATCGCTCTTCTGAT 59.069 43.478 10.54 0.00 0.00 2.90
5976 9917 3.931468 ACAAGTTGATCGCTCTTCTGATG 59.069 43.478 10.54 0.00 0.00 3.07
5977 9918 3.176552 AGTTGATCGCTCTTCTGATGG 57.823 47.619 0.00 0.00 0.00 3.51
5978 9919 2.762887 AGTTGATCGCTCTTCTGATGGA 59.237 45.455 0.00 0.00 0.00 3.41
5979 9920 3.387374 AGTTGATCGCTCTTCTGATGGAT 59.613 43.478 0.00 0.00 0.00 3.41
5980 9921 3.382048 TGATCGCTCTTCTGATGGATG 57.618 47.619 0.00 0.00 0.00 3.51
5981 9922 2.067766 GATCGCTCTTCTGATGGATGC 58.932 52.381 0.00 0.00 0.00 3.91
5982 9923 0.826062 TCGCTCTTCTGATGGATGCA 59.174 50.000 0.00 0.00 0.00 3.96
5983 9924 1.202498 TCGCTCTTCTGATGGATGCAG 60.202 52.381 0.00 0.00 34.71 4.41
5984 9925 0.945813 GCTCTTCTGATGGATGCAGC 59.054 55.000 0.00 0.00 33.45 5.25
5985 9926 1.218763 CTCTTCTGATGGATGCAGCG 58.781 55.000 0.00 0.00 33.45 5.18
5986 9927 0.826062 TCTTCTGATGGATGCAGCGA 59.174 50.000 0.00 0.00 33.45 4.93
5987 9928 0.935898 CTTCTGATGGATGCAGCGAC 59.064 55.000 0.00 0.00 33.45 5.19
5988 9929 0.462581 TTCTGATGGATGCAGCGACC 60.463 55.000 0.00 1.21 33.45 4.79
5989 9930 1.145598 CTGATGGATGCAGCGACCT 59.854 57.895 0.00 0.00 0.00 3.85
5990 9931 0.879400 CTGATGGATGCAGCGACCTC 60.879 60.000 0.00 0.00 0.00 3.85
5991 9932 1.144716 GATGGATGCAGCGACCTCA 59.855 57.895 0.00 0.00 0.00 3.86
5992 9933 0.879400 GATGGATGCAGCGACCTCAG 60.879 60.000 0.00 0.00 0.00 3.35
5993 9934 1.332889 ATGGATGCAGCGACCTCAGA 61.333 55.000 0.00 0.00 0.00 3.27
5994 9935 1.227205 GGATGCAGCGACCTCAGAG 60.227 63.158 0.00 0.00 0.00 3.35
5995 9936 1.670949 GGATGCAGCGACCTCAGAGA 61.671 60.000 0.00 0.00 0.00 3.10
5996 9937 0.527385 GATGCAGCGACCTCAGAGAC 60.527 60.000 0.00 0.00 0.00 3.36
5997 9938 2.202544 GCAGCGACCTCAGAGACG 60.203 66.667 0.00 5.85 0.00 4.18
5998 9939 2.487428 CAGCGACCTCAGAGACGG 59.513 66.667 15.23 0.00 0.00 4.79
5999 9940 2.041115 CAGCGACCTCAGAGACGGA 61.041 63.158 15.23 0.00 0.00 4.69
6000 9941 1.747367 AGCGACCTCAGAGACGGAG 60.747 63.158 15.23 0.00 0.00 4.63
6004 9945 2.363018 CCTCAGAGACGGAGGCCA 60.363 66.667 5.01 0.00 44.95 5.36
6005 9946 2.716017 CCTCAGAGACGGAGGCCAC 61.716 68.421 5.01 0.00 44.95 5.01
6006 9947 2.680352 TCAGAGACGGAGGCCACC 60.680 66.667 9.57 9.57 0.00 4.61
6007 9948 2.681778 CAGAGACGGAGGCCACCT 60.682 66.667 17.83 4.25 36.03 4.00
6008 9949 2.120718 AGAGACGGAGGCCACCTT 59.879 61.111 17.83 7.95 31.76 3.50
6009 9950 2.266055 GAGACGGAGGCCACCTTG 59.734 66.667 17.83 5.08 31.76 3.61
6010 9951 2.526873 AGACGGAGGCCACCTTGT 60.527 61.111 17.83 8.58 31.76 3.16
6011 9952 2.047179 GACGGAGGCCACCTTGTC 60.047 66.667 17.83 13.80 34.14 3.18
6012 9953 3.607370 GACGGAGGCCACCTTGTCC 62.607 68.421 17.83 7.03 35.02 4.02
6013 9954 4.410400 CGGAGGCCACCTTGTCCC 62.410 72.222 17.83 0.00 31.76 4.46
6014 9955 2.936032 GGAGGCCACCTTGTCCCT 60.936 66.667 12.67 0.00 31.76 4.20
6015 9956 2.352805 GAGGCCACCTTGTCCCTG 59.647 66.667 5.01 0.00 31.76 4.45
6016 9957 2.121963 AGGCCACCTTGTCCCTGA 60.122 61.111 5.01 0.00 0.00 3.86
6017 9958 1.774217 AGGCCACCTTGTCCCTGAA 60.774 57.895 5.01 0.00 0.00 3.02
6018 9959 1.152830 GGCCACCTTGTCCCTGAAA 59.847 57.895 0.00 0.00 0.00 2.69
6019 9960 0.895559 GGCCACCTTGTCCCTGAAAG 60.896 60.000 0.00 0.00 0.00 2.62
6020 9961 0.178990 GCCACCTTGTCCCTGAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
6021 9962 1.609208 CCACCTTGTCCCTGAAAGTG 58.391 55.000 0.00 0.00 0.00 3.16
6022 9963 0.954452 CACCTTGTCCCTGAAAGTGC 59.046 55.000 0.00 0.00 0.00 4.40
6023 9964 0.550914 ACCTTGTCCCTGAAAGTGCA 59.449 50.000 0.00 0.00 0.00 4.57
6024 9965 1.242076 CCTTGTCCCTGAAAGTGCAG 58.758 55.000 0.00 0.00 35.66 4.41
6025 9966 0.595095 CTTGTCCCTGAAAGTGCAGC 59.405 55.000 0.00 0.00 34.56 5.25
6026 9967 0.183492 TTGTCCCTGAAAGTGCAGCT 59.817 50.000 0.00 0.00 34.56 4.24
6027 9968 0.535780 TGTCCCTGAAAGTGCAGCTG 60.536 55.000 10.11 10.11 34.56 4.24
6028 9969 0.536006 GTCCCTGAAAGTGCAGCTGT 60.536 55.000 16.64 0.00 34.56 4.40
6029 9970 0.183492 TCCCTGAAAGTGCAGCTGTT 59.817 50.000 16.64 0.51 34.56 3.16
6030 9971 1.035139 CCCTGAAAGTGCAGCTGTTT 58.965 50.000 16.64 8.09 34.56 2.83
6031 9972 1.000938 CCCTGAAAGTGCAGCTGTTTC 60.001 52.381 16.64 16.96 34.56 2.78
6032 9973 1.952296 CCTGAAAGTGCAGCTGTTTCT 59.048 47.619 21.87 13.24 34.56 2.52
6033 9974 2.360165 CCTGAAAGTGCAGCTGTTTCTT 59.640 45.455 21.87 17.13 34.56 2.52
6034 9975 3.181483 CCTGAAAGTGCAGCTGTTTCTTT 60.181 43.478 21.87 22.23 34.56 2.52
6035 9976 4.032703 TGAAAGTGCAGCTGTTTCTTTC 57.967 40.909 30.20 30.20 42.10 2.62
6036 9977 3.181487 TGAAAGTGCAGCTGTTTCTTTCC 60.181 43.478 31.67 22.93 41.50 3.13
6037 9978 1.322442 AGTGCAGCTGTTTCTTTCCC 58.678 50.000 16.64 0.00 0.00 3.97
6038 9979 1.133668 AGTGCAGCTGTTTCTTTCCCT 60.134 47.619 16.64 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.229784 GTCTTTGTTGGCTGGAGGAATG 59.770 50.000 0.00 0.00 0.00 2.67
18 19 5.476599 TGATCCCAATAAGTGTCTTTGTTGG 59.523 40.000 14.00 14.00 44.36 3.77
32 33 7.894753 TGTCTTAATTTGCATGATCCCAATA 57.105 32.000 0.00 0.00 0.00 1.90
54 55 9.614792 GAGTTTTGGTAACTATGATCCTTATGT 57.385 33.333 0.00 0.00 37.61 2.29
140 141 6.241207 TCATAGCCTCTCTTTTTCGTTTTG 57.759 37.500 0.00 0.00 0.00 2.44
152 153 4.458989 CCAGAGAGTGTATCATAGCCTCTC 59.541 50.000 10.67 10.67 45.40 3.20
232 233 7.174946 CACGATGGGCTTGGAATATAATAAAGT 59.825 37.037 0.00 0.00 0.00 2.66
279 280 0.322816 TGTGGGATTTCAGCTGGCTC 60.323 55.000 15.13 8.12 0.00 4.70
316 323 2.594131 TGGAGGAAGAAGACAGACGAA 58.406 47.619 0.00 0.00 0.00 3.85
367 374 3.070734 TGTTCTTCTTCTTCTGCTGCTCT 59.929 43.478 0.00 0.00 0.00 4.09
377 384 6.368805 ACCAGGAATTCTTGTTCTTCTTCTT 58.631 36.000 15.60 0.00 0.00 2.52
380 387 5.701290 CGTACCAGGAATTCTTGTTCTTCTT 59.299 40.000 15.60 0.00 0.00 2.52
565 833 2.178580 TCCATTGCCCTGTGGAATTTC 58.821 47.619 0.00 0.00 41.36 2.17
703 971 6.388619 AAGACTACCCACCAATGTAGAATT 57.611 37.500 3.87 0.00 38.24 2.17
740 1008 6.037172 CGTAATCCACCCTGAAAGAAACATAG 59.963 42.308 0.00 0.00 34.07 2.23
791 1062 4.774124 CTCACTCAGATTGCCTAAATGGA 58.226 43.478 0.00 0.00 38.35 3.41
933 1204 5.172205 GCAACCAAGACACCTTTTTAAACA 58.828 37.500 0.00 0.00 0.00 2.83
937 1208 5.407407 TTTGCAACCAAGACACCTTTTTA 57.593 34.783 0.00 0.00 31.52 1.52
1069 1340 1.747355 CCCACTGATTGAGTCAATGCC 59.253 52.381 22.93 10.04 32.84 4.40
1290 1564 7.388500 CCCTTGTAATCAGCAATCAATTTGTTT 59.612 33.333 0.00 0.00 37.65 2.83
1313 1587 2.260639 TCTTGAATGGCTCTCTCCCT 57.739 50.000 0.00 0.00 0.00 4.20
1377 1681 1.681327 GTCTAGGGGCCAGTCGACA 60.681 63.158 19.50 0.00 0.00 4.35
1487 1806 5.751243 AACATCCTTGTAATAATCGGTGC 57.249 39.130 0.00 0.00 34.06 5.01
1496 1815 4.018050 AGGAGAGGCAAACATCCTTGTAAT 60.018 41.667 0.00 0.00 39.14 1.89
1555 1874 1.242076 GACTCAGCACATGCAAACCT 58.758 50.000 6.64 0.00 45.16 3.50
1560 1879 2.046988 CGGGACTCAGCACATGCA 60.047 61.111 6.64 0.00 45.16 3.96
1635 1962 2.234661 TGCCCTCTCATAGTCAACAGTG 59.765 50.000 0.00 0.00 0.00 3.66
1736 2074 4.825422 TGTCCAAATTGTTGCAACTTTCA 58.175 34.783 28.61 13.61 33.01 2.69
2349 2705 2.420129 CGGTCCATTTTTCCTCTCCGAT 60.420 50.000 0.00 0.00 39.17 4.18
2595 6346 1.577328 AATGTCTTGCTTCCCGTGCG 61.577 55.000 0.00 0.00 0.00 5.34
2682 6433 8.503458 TGGAGAAATCTGATTCTTCTTCATTC 57.497 34.615 8.39 0.00 39.70 2.67
2739 6490 3.090790 GTTTTCGAGACTCCTCCCTAGT 58.909 50.000 0.00 0.00 36.04 2.57
2778 6529 0.992431 ATCTTGCCAGCTCCTCCCAT 60.992 55.000 0.00 0.00 0.00 4.00
2882 6633 2.202987 GAGCCCAGAGATGCGTGG 60.203 66.667 0.00 0.00 0.00 4.94
2946 6697 1.066143 CAGAAGGATGGCGTTACCTGT 60.066 52.381 0.00 0.00 40.22 4.00
2955 6706 5.189180 ACTAAGACATTTCAGAAGGATGGC 58.811 41.667 0.86 0.00 0.00 4.40
3031 6786 4.464597 AGCCACACTTGGTTAAAAGTTTGA 59.535 37.500 7.47 0.00 45.98 2.69
3117 6872 5.580998 TCACTCTCATTTGTACTCTACCCT 58.419 41.667 0.00 0.00 0.00 4.34
3212 6967 5.450818 TGCTAGATGGGTGTTAATTCCTT 57.549 39.130 0.00 0.00 0.00 3.36
3235 6990 5.548573 AGGGACTAAAGGAAATGAGGGATA 58.451 41.667 0.00 0.00 36.02 2.59
3351 7108 1.694169 ATGAATGCGGGAGGGGAGT 60.694 57.895 0.00 0.00 0.00 3.85
3440 7197 0.972134 TTGGCCAAAAATGCATCGGA 59.028 45.000 17.98 0.00 0.00 4.55
3446 7203 9.558648 CTTTTCTATTTATTTGGCCAAAAATGC 57.441 29.630 33.43 0.00 33.56 3.56
3500 7422 3.181494 ACCGAAAAAGAAGTGGTTTTCCG 60.181 43.478 0.00 0.00 44.36 4.30
3509 7431 3.119779 TGTTGCGAAACCGAAAAAGAAGT 60.120 39.130 3.18 0.00 0.00 3.01
3519 7441 0.593773 CCCAAGTTGTTGCGAAACCG 60.594 55.000 3.18 0.00 31.64 4.44
3556 7478 3.317993 CGAAAACTTGACCATGGTTTCCT 59.682 43.478 20.85 0.00 38.31 3.36
3570 7492 3.564225 CCAGTAAGCAAGGTCGAAAACTT 59.436 43.478 0.00 0.00 0.00 2.66
3604 7526 3.501445 GGCTAGCCAATCTCATGACATTC 59.499 47.826 29.33 0.00 35.81 2.67
3610 7532 1.607509 CGGAGGCTAGCCAATCTCATG 60.608 57.143 34.70 15.44 38.92 3.07
3611 7533 0.683973 CGGAGGCTAGCCAATCTCAT 59.316 55.000 34.70 13.13 38.92 2.90
3656 7578 1.304962 GGGGTGGGCTAGGTTTTGG 60.305 63.158 0.00 0.00 0.00 3.28
3707 7629 2.125952 GCGGCAGCAACCCAAATC 60.126 61.111 3.18 0.00 44.35 2.17
3726 7648 0.966370 GTGGACGTGACCTAGAGCCT 60.966 60.000 0.00 0.00 0.00 4.58
3739 7661 3.197103 TCGATAGTCAAGCGGTGGACG 62.197 57.143 16.11 5.00 39.01 4.79
3842 7764 1.064296 GCTCGTCGACGGTGATGAT 59.936 57.895 35.05 0.00 40.29 2.45
3883 7810 1.003718 GGTACTTCAGTGGCGGCTT 60.004 57.895 11.43 0.00 0.00 4.35
3903 7830 2.105128 GGACGGAGCCTCACATCG 59.895 66.667 0.00 0.00 0.00 3.84
3958 7885 2.396955 CGACGCGTCTGGGTACTCT 61.397 63.158 33.94 0.00 41.99 3.24
4024 7951 1.897423 CGTGGAGGTATCACAGGCA 59.103 57.895 0.00 0.00 35.03 4.75
4029 7956 0.528684 GCTGAGCGTGGAGGTATCAC 60.529 60.000 0.00 0.00 0.00 3.06
4082 8009 1.517257 CCGCTGCTAAGGTGTCGAG 60.517 63.158 0.00 0.00 0.00 4.04
4158 8085 4.821589 GCTACAGCTCGGCCGCTT 62.822 66.667 23.51 4.96 38.41 4.68
4179 8106 3.736100 CATCAACGCGCTTGGCCA 61.736 61.111 5.73 0.00 38.94 5.36
4191 8118 0.669318 GGCCACGAAGACGACATCAA 60.669 55.000 0.00 0.00 42.66 2.57
4193 8120 1.080093 TGGCCACGAAGACGACATC 60.080 57.895 0.00 0.00 42.66 3.06
4232 8161 3.993081 GTGTTGTTCTGAGTGAGGATCTG 59.007 47.826 0.00 0.00 34.92 2.90
4253 8182 1.271656 CCCTACGGACTCAAAGAACGT 59.728 52.381 0.00 0.00 41.10 3.99
4285 8214 3.118454 CGGTGCTCGCGGACAATT 61.118 61.111 6.13 0.00 32.44 2.32
4294 8223 2.951745 GTGATCTCGCGGTGCTCG 60.952 66.667 6.13 0.00 42.76 5.03
4295 8224 2.583593 GGTGATCTCGCGGTGCTC 60.584 66.667 6.13 1.41 0.00 4.26
4296 8225 4.148825 GGGTGATCTCGCGGTGCT 62.149 66.667 6.13 0.00 0.00 4.40
4303 8232 0.807667 CTTTGAGGCGGGTGATCTCG 60.808 60.000 0.00 0.00 0.00 4.04
4304 8233 1.092345 GCTTTGAGGCGGGTGATCTC 61.092 60.000 0.00 0.00 0.00 2.75
4305 8234 1.078143 GCTTTGAGGCGGGTGATCT 60.078 57.895 0.00 0.00 0.00 2.75
4306 8235 2.115291 GGCTTTGAGGCGGGTGATC 61.115 63.158 0.00 0.00 0.00 2.92
4307 8236 2.044946 GGCTTTGAGGCGGGTGAT 60.045 61.111 0.00 0.00 0.00 3.06
4342 8271 1.137825 GAGCTCGTGAAGACCCTCG 59.862 63.158 0.00 0.00 0.00 4.63
4380 8309 1.075212 TCCATGGCATTGAGTTGTCCA 59.925 47.619 6.96 0.00 0.00 4.02
4389 8318 1.097547 GGACCGACTCCATGGCATTG 61.098 60.000 6.96 0.81 39.21 2.82
4442 8371 1.304962 GGGATCAACACCAACCCCC 60.305 63.158 0.00 0.00 35.00 5.40
4443 8372 4.434483 GGGATCAACACCAACCCC 57.566 61.111 0.00 0.00 35.00 4.95
4444 8373 4.434483 GGGGATCAACACCAACCC 57.566 61.111 0.00 0.00 42.69 4.11
4449 8378 1.141858 GAGGAGATGGGGATCAACACC 59.858 57.143 0.00 0.00 43.64 4.16
4450 8379 1.141858 GGAGGAGATGGGGATCAACAC 59.858 57.143 0.00 0.00 0.00 3.32
4451 8380 1.511613 GGAGGAGATGGGGATCAACA 58.488 55.000 0.00 0.00 0.00 3.33
4452 8381 0.394565 CGGAGGAGATGGGGATCAAC 59.605 60.000 0.00 0.00 0.00 3.18
4453 8382 0.264657 TCGGAGGAGATGGGGATCAA 59.735 55.000 0.00 0.00 0.00 2.57
4454 8383 0.178950 CTCGGAGGAGATGGGGATCA 60.179 60.000 0.00 0.00 43.27 2.92
4455 8384 0.178947 ACTCGGAGGAGATGGGGATC 60.179 60.000 10.23 0.00 43.27 3.36
4456 8385 0.178947 GACTCGGAGGAGATGGGGAT 60.179 60.000 10.23 0.00 43.27 3.85
4457 8386 1.230497 GACTCGGAGGAGATGGGGA 59.770 63.158 10.23 0.00 43.27 4.81
4458 8387 2.196925 CGACTCGGAGGAGATGGGG 61.197 68.421 10.23 0.00 43.27 4.96
4459 8388 3.437867 CGACTCGGAGGAGATGGG 58.562 66.667 10.23 0.00 43.27 4.00
4874 8803 7.931578 TTTTTCTCTCTACCAAACTTGTTCA 57.068 32.000 0.00 0.00 0.00 3.18
4904 8833 9.965824 GAAAAAGAAGGAAAGTTATGTCATTCA 57.034 29.630 3.95 0.00 37.09 2.57
4991 8926 5.451798 GGAGCACATGGTTACCCAATTAATG 60.452 44.000 0.00 0.00 46.04 1.90
5002 8937 0.618458 GGACCTGGAGCACATGGTTA 59.382 55.000 0.00 0.00 32.87 2.85
5039 8974 0.099436 GCAACATCGATCTTGGTGGC 59.901 55.000 14.20 6.40 32.30 5.01
5086 9021 7.849804 ATTAATCGACCACATAATAGGATGC 57.150 36.000 0.00 0.00 0.00 3.91
5138 9073 9.989394 CATTACATTACATTACGAGACATTACG 57.011 33.333 0.00 0.00 0.00 3.18
5144 9079 6.846283 GCTTGCATTACATTACATTACGAGAC 59.154 38.462 0.00 0.00 0.00 3.36
5177 9112 1.753463 AAAAACGACCAACCCGCCA 60.753 52.632 0.00 0.00 0.00 5.69
5466 9405 9.839817 GGCCCCTATAATAAAGCAAAAATAAAA 57.160 29.630 0.00 0.00 0.00 1.52
5467 9406 8.993424 TGGCCCCTATAATAAAGCAAAAATAAA 58.007 29.630 0.00 0.00 0.00 1.40
5468 9407 8.554490 TGGCCCCTATAATAAAGCAAAAATAA 57.446 30.769 0.00 0.00 0.00 1.40
5469 9408 8.554490 TTGGCCCCTATAATAAAGCAAAAATA 57.446 30.769 0.00 0.00 0.00 1.40
5470 9409 7.346960 TCTTGGCCCCTATAATAAAGCAAAAAT 59.653 33.333 0.00 0.00 0.00 1.82
5471 9410 6.670027 TCTTGGCCCCTATAATAAAGCAAAAA 59.330 34.615 0.00 0.00 0.00 1.94
5491 9430 2.795231 TCATCCAGCCTTCTTCTTGG 57.205 50.000 0.00 0.00 0.00 3.61
5632 9573 1.346395 AGCTCACGGTGGACAATAACA 59.654 47.619 8.50 0.00 0.00 2.41
5633 9574 1.732259 CAGCTCACGGTGGACAATAAC 59.268 52.381 8.50 0.00 35.06 1.89
5747 9688 5.654370 AGGAATCCCTGGATCTTTCAAAAA 58.346 37.500 0.00 0.00 42.42 1.94
5748 9689 5.275263 AGGAATCCCTGGATCTTTCAAAA 57.725 39.130 0.00 0.00 42.42 2.44
5749 9690 4.953781 AGGAATCCCTGGATCTTTCAAA 57.046 40.909 0.00 0.00 42.42 2.69
5761 9702 3.102204 CAATGAAAAGCCAGGAATCCCT 58.898 45.455 0.00 0.00 45.74 4.20
5762 9703 3.099141 TCAATGAAAAGCCAGGAATCCC 58.901 45.455 0.00 0.00 0.00 3.85
5763 9704 5.349061 AATCAATGAAAAGCCAGGAATCC 57.651 39.130 0.00 0.00 0.00 3.01
5764 9705 6.478016 GCTAAATCAATGAAAAGCCAGGAATC 59.522 38.462 0.00 0.00 0.00 2.52
5765 9706 6.070653 TGCTAAATCAATGAAAAGCCAGGAAT 60.071 34.615 10.81 0.00 0.00 3.01
5766 9707 5.245751 TGCTAAATCAATGAAAAGCCAGGAA 59.754 36.000 10.81 0.00 0.00 3.36
5767 9708 4.771577 TGCTAAATCAATGAAAAGCCAGGA 59.228 37.500 10.81 0.00 0.00 3.86
5768 9709 5.075858 TGCTAAATCAATGAAAAGCCAGG 57.924 39.130 10.81 0.00 0.00 4.45
5769 9710 5.957798 TCTGCTAAATCAATGAAAAGCCAG 58.042 37.500 10.81 8.87 0.00 4.85
5770 9711 5.711506 TCTCTGCTAAATCAATGAAAAGCCA 59.288 36.000 10.81 0.39 0.00 4.75
5771 9712 6.199937 TCTCTGCTAAATCAATGAAAAGCC 57.800 37.500 10.81 0.00 0.00 4.35
5772 9713 5.742926 GCTCTCTGCTAAATCAATGAAAAGC 59.257 40.000 7.59 7.59 38.95 3.51
5773 9714 6.849502 TGCTCTCTGCTAAATCAATGAAAAG 58.150 36.000 0.00 0.00 43.37 2.27
5774 9715 6.822667 TGCTCTCTGCTAAATCAATGAAAA 57.177 33.333 0.00 0.00 43.37 2.29
5775 9716 6.822667 TTGCTCTCTGCTAAATCAATGAAA 57.177 33.333 0.00 0.00 43.37 2.69
5776 9717 6.183360 CCATTGCTCTCTGCTAAATCAATGAA 60.183 38.462 12.05 0.00 40.75 2.57
5777 9718 5.298527 CCATTGCTCTCTGCTAAATCAATGA 59.701 40.000 12.05 0.00 40.75 2.57
5778 9719 5.298527 TCCATTGCTCTCTGCTAAATCAATG 59.701 40.000 0.00 0.00 43.37 2.82
5779 9720 5.443283 TCCATTGCTCTCTGCTAAATCAAT 58.557 37.500 0.00 0.00 43.37 2.57
5780 9721 4.847198 TCCATTGCTCTCTGCTAAATCAA 58.153 39.130 0.00 0.00 43.37 2.57
5781 9722 4.162888 TCTCCATTGCTCTCTGCTAAATCA 59.837 41.667 0.00 0.00 43.37 2.57
5782 9723 4.701765 TCTCCATTGCTCTCTGCTAAATC 58.298 43.478 0.00 0.00 43.37 2.17
5783 9724 4.767578 TCTCCATTGCTCTCTGCTAAAT 57.232 40.909 0.00 0.00 43.37 1.40
5784 9725 4.558226 TTCTCCATTGCTCTCTGCTAAA 57.442 40.909 0.00 0.00 43.37 1.85
5785 9726 4.449131 CATTCTCCATTGCTCTCTGCTAA 58.551 43.478 0.00 0.00 43.37 3.09
5786 9727 3.743584 GCATTCTCCATTGCTCTCTGCTA 60.744 47.826 0.00 0.00 43.37 3.49
5787 9728 2.920524 CATTCTCCATTGCTCTCTGCT 58.079 47.619 0.00 0.00 43.37 4.24
5788 9729 1.334243 GCATTCTCCATTGCTCTCTGC 59.666 52.381 0.00 0.00 43.25 4.26
5789 9730 2.640184 TGCATTCTCCATTGCTCTCTG 58.360 47.619 0.00 0.00 39.60 3.35
5790 9731 3.361281 TTGCATTCTCCATTGCTCTCT 57.639 42.857 0.00 0.00 39.60 3.10
5791 9732 3.192001 TGTTTGCATTCTCCATTGCTCTC 59.808 43.478 0.00 0.00 39.60 3.20
5792 9733 3.159472 TGTTTGCATTCTCCATTGCTCT 58.841 40.909 0.00 0.00 39.60 4.09
5793 9734 3.581024 TGTTTGCATTCTCCATTGCTC 57.419 42.857 0.00 0.00 39.60 4.26
5794 9735 3.369052 CCATGTTTGCATTCTCCATTGCT 60.369 43.478 0.00 0.00 39.60 3.91
5795 9736 2.933906 CCATGTTTGCATTCTCCATTGC 59.066 45.455 0.00 0.00 39.33 3.56
5796 9737 2.933906 GCCATGTTTGCATTCTCCATTG 59.066 45.455 0.00 0.00 31.99 2.82
5797 9738 2.417651 CGCCATGTTTGCATTCTCCATT 60.418 45.455 0.00 0.00 31.99 3.16
5798 9739 1.135527 CGCCATGTTTGCATTCTCCAT 59.864 47.619 0.00 0.00 31.99 3.41
5799 9740 0.527113 CGCCATGTTTGCATTCTCCA 59.473 50.000 0.00 0.00 31.99 3.86
5800 9741 0.179129 CCGCCATGTTTGCATTCTCC 60.179 55.000 0.00 0.00 31.99 3.71
5801 9742 0.179129 CCCGCCATGTTTGCATTCTC 60.179 55.000 0.00 0.00 31.99 2.87
5802 9743 1.606885 CCCCGCCATGTTTGCATTCT 61.607 55.000 0.00 0.00 31.99 2.40
5803 9744 1.153588 CCCCGCCATGTTTGCATTC 60.154 57.895 0.00 0.00 31.99 2.67
5804 9745 2.658064 CCCCCGCCATGTTTGCATT 61.658 57.895 0.00 0.00 31.99 3.56
5805 9746 3.076278 CCCCCGCCATGTTTGCAT 61.076 61.111 0.00 0.00 35.32 3.96
5806 9747 4.612279 ACCCCCGCCATGTTTGCA 62.612 61.111 0.00 0.00 0.00 4.08
5807 9748 4.067913 CACCCCCGCCATGTTTGC 62.068 66.667 0.00 0.00 0.00 3.68
5808 9749 2.282816 TCACCCCCGCCATGTTTG 60.283 61.111 0.00 0.00 0.00 2.93
5809 9750 2.282887 GTCACCCCCGCCATGTTT 60.283 61.111 0.00 0.00 0.00 2.83
5810 9751 4.360405 GGTCACCCCCGCCATGTT 62.360 66.667 0.00 0.00 0.00 2.71
5826 9767 2.420129 CCTTCATTCCTTGACCTACGGG 60.420 54.545 0.00 0.00 32.84 5.28
5827 9768 2.420129 CCCTTCATTCCTTGACCTACGG 60.420 54.545 0.00 0.00 32.84 4.02
5828 9769 2.500098 TCCCTTCATTCCTTGACCTACG 59.500 50.000 0.00 0.00 32.84 3.51
5829 9770 4.569719 TTCCCTTCATTCCTTGACCTAC 57.430 45.455 0.00 0.00 32.84 3.18
5830 9771 5.312178 TCTTTTCCCTTCATTCCTTGACCTA 59.688 40.000 0.00 0.00 32.84 3.08
5831 9772 4.106341 TCTTTTCCCTTCATTCCTTGACCT 59.894 41.667 0.00 0.00 32.84 3.85
5832 9773 4.407365 TCTTTTCCCTTCATTCCTTGACC 58.593 43.478 0.00 0.00 32.84 4.02
5833 9774 6.405278 TTTCTTTTCCCTTCATTCCTTGAC 57.595 37.500 0.00 0.00 32.84 3.18
5834 9775 6.382570 TGTTTTCTTTTCCCTTCATTCCTTGA 59.617 34.615 0.00 0.00 0.00 3.02
5835 9776 6.581712 TGTTTTCTTTTCCCTTCATTCCTTG 58.418 36.000 0.00 0.00 0.00 3.61
5836 9777 6.806668 TGTTTTCTTTTCCCTTCATTCCTT 57.193 33.333 0.00 0.00 0.00 3.36
5837 9778 6.806668 TTGTTTTCTTTTCCCTTCATTCCT 57.193 33.333 0.00 0.00 0.00 3.36
5838 9779 7.272244 TCTTTGTTTTCTTTTCCCTTCATTCC 58.728 34.615 0.00 0.00 0.00 3.01
5839 9780 8.197439 TCTCTTTGTTTTCTTTTCCCTTCATTC 58.803 33.333 0.00 0.00 0.00 2.67
5840 9781 8.078060 TCTCTTTGTTTTCTTTTCCCTTCATT 57.922 30.769 0.00 0.00 0.00 2.57
5841 9782 7.660030 TCTCTTTGTTTTCTTTTCCCTTCAT 57.340 32.000 0.00 0.00 0.00 2.57
5842 9783 7.475137 TTCTCTTTGTTTTCTTTTCCCTTCA 57.525 32.000 0.00 0.00 0.00 3.02
5843 9784 8.771920 TTTTCTCTTTGTTTTCTTTTCCCTTC 57.228 30.769 0.00 0.00 0.00 3.46
5845 9786 9.817809 GTATTTTCTCTTTGTTTTCTTTTCCCT 57.182 29.630 0.00 0.00 0.00 4.20
5846 9787 9.594478 TGTATTTTCTCTTTGTTTTCTTTTCCC 57.406 29.630 0.00 0.00 0.00 3.97
5861 9802 9.713713 GAGACCTCTAGTTTTTGTATTTTCTCT 57.286 33.333 0.00 0.00 0.00 3.10
5862 9803 9.490379 TGAGACCTCTAGTTTTTGTATTTTCTC 57.510 33.333 0.00 0.00 0.00 2.87
5863 9804 9.847224 TTGAGACCTCTAGTTTTTGTATTTTCT 57.153 29.630 0.00 0.00 0.00 2.52
5866 9807 9.628500 ACTTTGAGACCTCTAGTTTTTGTATTT 57.372 29.630 0.00 0.00 0.00 1.40
5867 9808 9.628500 AACTTTGAGACCTCTAGTTTTTGTATT 57.372 29.630 10.26 0.00 34.19 1.89
5869 9810 9.538508 GTAACTTTGAGACCTCTAGTTTTTGTA 57.461 33.333 16.87 3.82 36.89 2.41
5870 9811 8.044908 TGTAACTTTGAGACCTCTAGTTTTTGT 58.955 33.333 16.87 3.26 36.89 2.83
5871 9812 8.433421 TGTAACTTTGAGACCTCTAGTTTTTG 57.567 34.615 16.87 0.00 36.89 2.44
5875 9816 9.482175 AGATATGTAACTTTGAGACCTCTAGTT 57.518 33.333 16.30 16.30 38.12 2.24
5876 9817 9.127277 GAGATATGTAACTTTGAGACCTCTAGT 57.873 37.037 0.00 0.14 0.00 2.57
5877 9818 8.573035 GGAGATATGTAACTTTGAGACCTCTAG 58.427 40.741 0.00 0.00 0.00 2.43
5878 9819 7.506261 GGGAGATATGTAACTTTGAGACCTCTA 59.494 40.741 0.00 0.00 0.00 2.43
5879 9820 6.325286 GGGAGATATGTAACTTTGAGACCTCT 59.675 42.308 0.00 0.00 0.00 3.69
5880 9821 6.517605 GGGAGATATGTAACTTTGAGACCTC 58.482 44.000 0.00 0.00 0.00 3.85
5881 9822 5.069251 CGGGAGATATGTAACTTTGAGACCT 59.931 44.000 0.00 0.00 0.00 3.85
5882 9823 5.068723 TCGGGAGATATGTAACTTTGAGACC 59.931 44.000 0.00 0.00 0.00 3.85
5883 9824 5.978322 GTCGGGAGATATGTAACTTTGAGAC 59.022 44.000 0.00 0.00 43.27 3.36
5884 9825 5.655090 TGTCGGGAGATATGTAACTTTGAGA 59.345 40.000 0.00 0.00 43.27 3.27
5885 9826 5.902681 TGTCGGGAGATATGTAACTTTGAG 58.097 41.667 0.00 0.00 43.27 3.02
5886 9827 5.925506 TGTCGGGAGATATGTAACTTTGA 57.074 39.130 0.00 0.00 43.27 2.69
5896 9837 1.645710 GGGGACATGTCGGGAGATAT 58.354 55.000 19.33 0.00 41.69 1.63
5897 9838 0.826256 CGGGGACATGTCGGGAGATA 60.826 60.000 19.33 0.00 43.27 1.98
5898 9839 2.134287 CGGGGACATGTCGGGAGAT 61.134 63.158 19.33 0.00 43.27 2.75
5899 9840 2.758327 CGGGGACATGTCGGGAGA 60.758 66.667 19.33 0.00 0.00 3.71
5900 9841 2.355986 TTCGGGGACATGTCGGGAG 61.356 63.158 19.33 10.66 0.00 4.30
5901 9842 2.284039 TTCGGGGACATGTCGGGA 60.284 61.111 19.33 12.92 0.00 5.14
5902 9843 2.125269 GTTCGGGGACATGTCGGG 60.125 66.667 19.33 10.86 0.00 5.14
5903 9844 2.508439 CGTTCGGGGACATGTCGG 60.508 66.667 19.33 11.20 0.00 4.79
5904 9845 2.508439 CCGTTCGGGGACATGTCG 60.508 66.667 19.33 9.35 0.00 4.35
5914 9855 2.106683 GCATTGAGACCCCGTTCGG 61.107 63.158 4.08 4.08 0.00 4.30
5915 9856 0.744414 ATGCATTGAGACCCCGTTCG 60.744 55.000 0.00 0.00 0.00 3.95
5916 9857 0.734889 CATGCATTGAGACCCCGTTC 59.265 55.000 0.00 0.00 0.00 3.95
5917 9858 0.038166 ACATGCATTGAGACCCCGTT 59.962 50.000 0.00 0.00 0.00 4.44
5918 9859 0.908910 TACATGCATTGAGACCCCGT 59.091 50.000 0.00 0.00 0.00 5.28
5919 9860 1.586422 CTACATGCATTGAGACCCCG 58.414 55.000 0.00 0.00 0.00 5.73
5920 9861 1.312815 GCTACATGCATTGAGACCCC 58.687 55.000 0.00 0.00 42.31 4.95
5921 9862 0.940126 CGCTACATGCATTGAGACCC 59.060 55.000 0.00 0.00 43.06 4.46
5922 9863 0.305922 GCGCTACATGCATTGAGACC 59.694 55.000 0.00 0.00 43.06 3.85
5923 9864 0.305922 GGCGCTACATGCATTGAGAC 59.694 55.000 7.64 0.00 43.06 3.36
5924 9865 0.107752 TGGCGCTACATGCATTGAGA 60.108 50.000 7.64 0.00 43.06 3.27
5925 9866 0.306840 CTGGCGCTACATGCATTGAG 59.693 55.000 7.64 0.00 43.06 3.02
5926 9867 1.717791 GCTGGCGCTACATGCATTGA 61.718 55.000 7.64 0.00 43.06 2.57
5927 9868 1.298863 GCTGGCGCTACATGCATTG 60.299 57.895 7.64 0.00 43.06 2.82
5928 9869 2.827051 CGCTGGCGCTACATGCATT 61.827 57.895 7.64 0.00 43.06 3.56
5929 9870 3.274586 CGCTGGCGCTACATGCAT 61.275 61.111 7.64 0.00 43.06 3.96
5946 9887 3.667429 GATCAACTTGTGGCGCGCC 62.667 63.158 42.35 42.35 0.00 6.53
5947 9888 2.202349 GATCAACTTGTGGCGCGC 60.202 61.111 25.94 25.94 0.00 6.86
5948 9889 2.096406 CGATCAACTTGTGGCGCG 59.904 61.111 0.00 0.00 0.00 6.86
5949 9890 2.202349 GCGATCAACTTGTGGCGC 60.202 61.111 0.00 0.00 41.63 6.53
5950 9891 1.016130 AGAGCGATCAACTTGTGGCG 61.016 55.000 2.38 0.00 0.00 5.69
5951 9892 1.129437 GAAGAGCGATCAACTTGTGGC 59.871 52.381 2.38 0.00 0.00 5.01
5952 9893 2.414481 CAGAAGAGCGATCAACTTGTGG 59.586 50.000 2.38 0.00 33.38 4.17
5953 9894 3.320626 TCAGAAGAGCGATCAACTTGTG 58.679 45.455 2.38 11.60 36.64 3.33
5954 9895 3.667497 TCAGAAGAGCGATCAACTTGT 57.333 42.857 2.38 0.00 0.00 3.16
5955 9896 3.309138 CCATCAGAAGAGCGATCAACTTG 59.691 47.826 2.38 0.00 0.00 3.16
5956 9897 3.196469 TCCATCAGAAGAGCGATCAACTT 59.804 43.478 2.38 0.00 0.00 2.66
5957 9898 2.762887 TCCATCAGAAGAGCGATCAACT 59.237 45.455 2.38 0.00 0.00 3.16
5958 9899 3.170791 TCCATCAGAAGAGCGATCAAC 57.829 47.619 2.38 0.00 0.00 3.18
5959 9900 3.725490 CATCCATCAGAAGAGCGATCAA 58.275 45.455 2.38 0.00 0.00 2.57
5960 9901 2.547430 GCATCCATCAGAAGAGCGATCA 60.547 50.000 2.38 0.00 0.00 2.92
5961 9902 2.067766 GCATCCATCAGAAGAGCGATC 58.932 52.381 0.00 0.00 0.00 3.69
5962 9903 1.415289 TGCATCCATCAGAAGAGCGAT 59.585 47.619 0.00 0.00 0.00 4.58
5963 9904 0.826062 TGCATCCATCAGAAGAGCGA 59.174 50.000 0.00 0.00 0.00 4.93
5964 9905 1.218763 CTGCATCCATCAGAAGAGCG 58.781 55.000 0.00 0.00 33.54 5.03
5965 9906 0.945813 GCTGCATCCATCAGAAGAGC 59.054 55.000 0.00 0.00 33.54 4.09
5966 9907 1.202498 TCGCTGCATCCATCAGAAGAG 60.202 52.381 0.00 0.00 33.54 2.85
5967 9908 0.826062 TCGCTGCATCCATCAGAAGA 59.174 50.000 0.00 0.00 33.54 2.87
5968 9909 0.935898 GTCGCTGCATCCATCAGAAG 59.064 55.000 0.00 0.00 33.54 2.85
5969 9910 0.462581 GGTCGCTGCATCCATCAGAA 60.463 55.000 0.00 0.00 33.54 3.02
5970 9911 1.144716 GGTCGCTGCATCCATCAGA 59.855 57.895 0.00 0.00 33.54 3.27
5971 9912 0.879400 GAGGTCGCTGCATCCATCAG 60.879 60.000 11.58 0.00 34.79 2.90
5972 9913 1.144716 GAGGTCGCTGCATCCATCA 59.855 57.895 11.58 0.00 0.00 3.07
5973 9914 0.879400 CTGAGGTCGCTGCATCCATC 60.879 60.000 11.58 7.39 0.00 3.51
5974 9915 1.145598 CTGAGGTCGCTGCATCCAT 59.854 57.895 11.58 0.00 0.00 3.41
5975 9916 1.953231 CTCTGAGGTCGCTGCATCCA 61.953 60.000 11.58 0.00 0.00 3.41
5976 9917 1.227205 CTCTGAGGTCGCTGCATCC 60.227 63.158 0.00 0.90 0.00 3.51
5977 9918 0.527385 GTCTCTGAGGTCGCTGCATC 60.527 60.000 4.59 0.00 0.00 3.91
5978 9919 1.515020 GTCTCTGAGGTCGCTGCAT 59.485 57.895 4.59 0.00 0.00 3.96
5979 9920 2.965783 GTCTCTGAGGTCGCTGCA 59.034 61.111 4.59 0.00 0.00 4.41
5980 9921 2.202544 CGTCTCTGAGGTCGCTGC 60.203 66.667 4.59 0.00 0.00 5.25
5981 9922 1.987704 CTCCGTCTCTGAGGTCGCTG 61.988 65.000 4.59 3.04 0.00 5.18
5982 9923 1.747367 CTCCGTCTCTGAGGTCGCT 60.747 63.158 4.59 0.00 0.00 4.93
5983 9924 2.766400 CCTCCGTCTCTGAGGTCGC 61.766 68.421 4.59 0.00 43.68 5.19
5984 9925 3.503749 CCTCCGTCTCTGAGGTCG 58.496 66.667 4.59 9.97 43.68 4.79
5988 9929 2.716017 GGTGGCCTCCGTCTCTGAG 61.716 68.421 8.37 0.00 0.00 3.35
5989 9930 2.680352 GGTGGCCTCCGTCTCTGA 60.680 66.667 8.37 0.00 0.00 3.27
5990 9931 2.286523 AAGGTGGCCTCCGTCTCTG 61.287 63.158 18.02 0.00 30.89 3.35
5991 9932 2.120718 AAGGTGGCCTCCGTCTCT 59.879 61.111 18.02 0.00 30.89 3.10
5992 9933 2.266055 CAAGGTGGCCTCCGTCTC 59.734 66.667 18.02 0.00 30.89 3.36
5993 9934 2.526873 ACAAGGTGGCCTCCGTCT 60.527 61.111 18.02 0.00 30.89 4.18
5994 9935 2.047179 GACAAGGTGGCCTCCGTC 60.047 66.667 18.02 15.66 30.89 4.79
5995 9936 3.637273 GGACAAGGTGGCCTCCGT 61.637 66.667 18.02 12.52 44.12 4.69
6001 9942 0.178990 ACTTTCAGGGACAAGGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
6002 9943 1.609208 CACTTTCAGGGACAAGGTGG 58.391 55.000 0.00 0.00 0.00 4.61
6003 9944 0.954452 GCACTTTCAGGGACAAGGTG 59.046 55.000 0.00 0.00 0.00 4.00
6004 9945 0.550914 TGCACTTTCAGGGACAAGGT 59.449 50.000 0.00 0.00 0.00 3.50
6005 9946 1.242076 CTGCACTTTCAGGGACAAGG 58.758 55.000 0.00 0.00 0.00 3.61
6006 9947 0.595095 GCTGCACTTTCAGGGACAAG 59.405 55.000 0.00 0.00 34.74 3.16
6007 9948 0.183492 AGCTGCACTTTCAGGGACAA 59.817 50.000 1.02 0.00 34.74 3.18
6008 9949 0.535780 CAGCTGCACTTTCAGGGACA 60.536 55.000 0.00 0.00 34.74 4.02
6009 9950 0.536006 ACAGCTGCACTTTCAGGGAC 60.536 55.000 15.27 0.00 34.74 4.46
6010 9951 0.183492 AACAGCTGCACTTTCAGGGA 59.817 50.000 15.27 0.00 34.74 4.20
6011 9952 1.000938 GAAACAGCTGCACTTTCAGGG 60.001 52.381 15.27 0.00 34.74 4.45
6012 9953 1.952296 AGAAACAGCTGCACTTTCAGG 59.048 47.619 22.88 0.00 34.74 3.86
6013 9954 3.705043 AAGAAACAGCTGCACTTTCAG 57.295 42.857 22.88 0.00 37.15 3.02
6014 9955 3.181487 GGAAAGAAACAGCTGCACTTTCA 60.181 43.478 34.41 0.00 44.32 2.69
6015 9956 3.375642 GGAAAGAAACAGCTGCACTTTC 58.624 45.455 30.72 30.72 42.86 2.62
6016 9957 2.101415 GGGAAAGAAACAGCTGCACTTT 59.899 45.455 23.52 23.52 34.24 2.66
6017 9958 1.683385 GGGAAAGAAACAGCTGCACTT 59.317 47.619 15.27 13.63 0.00 3.16
6018 9959 1.133668 AGGGAAAGAAACAGCTGCACT 60.134 47.619 15.27 7.87 0.00 4.40
6019 9960 1.322442 AGGGAAAGAAACAGCTGCAC 58.678 50.000 15.27 5.41 0.00 4.57
6020 9961 3.827505 AGGGAAAGAAACAGCTGCA 57.172 47.368 15.27 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.