Multiple sequence alignment - TraesCS3A01G537300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G537300 | chr3A | 100.000 | 3614 | 0 | 0 | 1 | 3614 | 749205489 | 749201876 | 0.000000e+00 | 6674.0 |
1 | TraesCS3A01G537300 | chr7A | 98.440 | 1154 | 16 | 1 | 2461 | 3614 | 27671577 | 27670426 | 0.000000e+00 | 2030.0 |
2 | TraesCS3A01G537300 | chr7A | 98.267 | 1154 | 18 | 1 | 2461 | 3614 | 27646929 | 27645778 | 0.000000e+00 | 2019.0 |
3 | TraesCS3A01G537300 | chr6A | 98.095 | 1155 | 18 | 3 | 2460 | 3614 | 595589445 | 595590595 | 0.000000e+00 | 2008.0 |
4 | TraesCS3A01G537300 | chr2A | 97.992 | 996 | 20 | 0 | 2461 | 3456 | 203582792 | 203583787 | 0.000000e+00 | 1729.0 |
5 | TraesCS3A01G537300 | chr2A | 94.595 | 148 | 8 | 0 | 99 | 246 | 575349136 | 575349283 | 2.810000e-56 | 230.0 |
6 | TraesCS3A01G537300 | chr2A | 93.960 | 149 | 9 | 0 | 99 | 247 | 600628292 | 600628440 | 3.630000e-55 | 226.0 |
7 | TraesCS3A01G537300 | chr2A | 82.877 | 146 | 20 | 4 | 446 | 591 | 630168075 | 630168215 | 3.790000e-25 | 126.0 |
8 | TraesCS3A01G537300 | chr6D | 95.349 | 1075 | 44 | 4 | 2543 | 3614 | 463444981 | 463443910 | 0.000000e+00 | 1703.0 |
9 | TraesCS3A01G537300 | chr5B | 94.693 | 1074 | 53 | 3 | 2543 | 3614 | 155287848 | 155288919 | 0.000000e+00 | 1664.0 |
10 | TraesCS3A01G537300 | chr5B | 93.220 | 118 | 8 | 0 | 474 | 591 | 596547664 | 596547781 | 1.330000e-39 | 174.0 |
11 | TraesCS3A01G537300 | chr7D | 95.275 | 1037 | 46 | 2 | 2543 | 3576 | 10754553 | 10755589 | 0.000000e+00 | 1640.0 |
12 | TraesCS3A01G537300 | chr7D | 94.118 | 153 | 9 | 0 | 99 | 251 | 176357346 | 176357498 | 2.170000e-57 | 233.0 |
13 | TraesCS3A01G537300 | chr7D | 96.429 | 140 | 5 | 0 | 107 | 246 | 63379963 | 63379824 | 7.800000e-57 | 231.0 |
14 | TraesCS3A01G537300 | chr7D | 92.308 | 156 | 11 | 1 | 91 | 246 | 134485879 | 134486033 | 1.690000e-53 | 220.0 |
15 | TraesCS3A01G537300 | chr7D | 92.000 | 125 | 9 | 1 | 466 | 590 | 93126852 | 93126729 | 1.330000e-39 | 174.0 |
16 | TraesCS3A01G537300 | chr7D | 93.043 | 115 | 8 | 0 | 476 | 590 | 430095732 | 430095846 | 6.210000e-38 | 169.0 |
17 | TraesCS3A01G537300 | chr7D | 98.824 | 85 | 1 | 0 | 2461 | 2545 | 10754507 | 10754591 | 6.250000e-33 | 152.0 |
18 | TraesCS3A01G537300 | chr2D | 95.174 | 1036 | 48 | 1 | 2543 | 3576 | 7472019 | 7470984 | 0.000000e+00 | 1635.0 |
19 | TraesCS3A01G537300 | chr2D | 98.824 | 85 | 1 | 0 | 2461 | 2545 | 7472065 | 7471981 | 6.250000e-33 | 152.0 |
20 | TraesCS3A01G537300 | chr1B | 94.206 | 1070 | 58 | 3 | 2543 | 3610 | 130552616 | 130551549 | 0.000000e+00 | 1629.0 |
21 | TraesCS3A01G537300 | chr1B | 97.727 | 88 | 2 | 0 | 2461 | 2548 | 171011457 | 171011370 | 6.250000e-33 | 152.0 |
22 | TraesCS3A01G537300 | chr3D | 92.619 | 989 | 64 | 6 | 1415 | 2395 | 613598922 | 613597935 | 0.000000e+00 | 1413.0 |
23 | TraesCS3A01G537300 | chr3D | 91.489 | 235 | 17 | 3 | 614 | 846 | 613600280 | 613600047 | 1.620000e-83 | 320.0 |
24 | TraesCS3A01G537300 | chr3D | 91.304 | 161 | 12 | 2 | 99 | 258 | 500140292 | 500140133 | 6.080000e-53 | 219.0 |
25 | TraesCS3A01G537300 | chr3D | 83.854 | 192 | 18 | 8 | 284 | 475 | 613601539 | 613601361 | 1.730000e-38 | 171.0 |
26 | TraesCS3A01G537300 | chr3D | 96.078 | 51 | 2 | 0 | 593 | 643 | 613600408 | 613600358 | 2.310000e-12 | 84.2 |
27 | TraesCS3A01G537300 | chr3D | 89.655 | 58 | 6 | 0 | 895 | 952 | 613599948 | 613599891 | 1.390000e-09 | 75.0 |
28 | TraesCS3A01G537300 | chr3B | 88.413 | 1191 | 110 | 20 | 1222 | 2395 | 822820535 | 822819356 | 0.000000e+00 | 1410.0 |
29 | TraesCS3A01G537300 | chr3B | 87.732 | 269 | 29 | 4 | 895 | 1161 | 822821052 | 822820786 | 9.740000e-81 | 311.0 |
30 | TraesCS3A01G537300 | chr3B | 83.108 | 296 | 27 | 9 | 2090 | 2384 | 823079618 | 823079891 | 7.750000e-62 | 248.0 |
31 | TraesCS3A01G537300 | chr3B | 93.919 | 148 | 9 | 0 | 99 | 246 | 368322915 | 368323062 | 1.310000e-54 | 224.0 |
32 | TraesCS3A01G537300 | chr3B | 94.186 | 86 | 5 | 0 | 688 | 773 | 822821268 | 822821183 | 8.140000e-27 | 132.0 |
33 | TraesCS3A01G537300 | chr3B | 87.640 | 89 | 7 | 2 | 1734 | 1822 | 823079544 | 823079628 | 2.300000e-17 | 100.0 |
34 | TraesCS3A01G537300 | chr4D | 95.302 | 149 | 7 | 0 | 99 | 247 | 309297343 | 309297195 | 1.680000e-58 | 237.0 |
35 | TraesCS3A01G537300 | chr4D | 91.538 | 130 | 10 | 1 | 464 | 593 | 5923338 | 5923210 | 1.030000e-40 | 178.0 |
36 | TraesCS3A01G537300 | chr4D | 98.824 | 85 | 1 | 0 | 2461 | 2545 | 213332809 | 213332893 | 6.250000e-33 | 152.0 |
37 | TraesCS3A01G537300 | chr7B | 93.919 | 148 | 9 | 0 | 99 | 246 | 737071256 | 737071109 | 1.310000e-54 | 224.0 |
38 | TraesCS3A01G537300 | chr7B | 96.581 | 117 | 4 | 0 | 474 | 590 | 679795611 | 679795727 | 1.020000e-45 | 195.0 |
39 | TraesCS3A01G537300 | chr7B | 92.308 | 117 | 9 | 0 | 474 | 590 | 501600435 | 501600551 | 2.230000e-37 | 167.0 |
40 | TraesCS3A01G537300 | chr2B | 95.000 | 120 | 6 | 0 | 473 | 592 | 710283397 | 710283516 | 4.760000e-44 | 189.0 |
41 | TraesCS3A01G537300 | chr6B | 94.872 | 117 | 6 | 0 | 474 | 590 | 71316934 | 71316818 | 2.220000e-42 | 183.0 |
42 | TraesCS3A01G537300 | chr5D | 89.552 | 134 | 12 | 2 | 472 | 605 | 450203288 | 450203157 | 6.210000e-38 | 169.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G537300 | chr3A | 749201876 | 749205489 | 3613 | True | 6674.000000 | 6674 | 100.000000 | 1 | 3614 | 1 | chr3A.!!$R1 | 3613 |
1 | TraesCS3A01G537300 | chr7A | 27670426 | 27671577 | 1151 | True | 2030.000000 | 2030 | 98.440000 | 2461 | 3614 | 1 | chr7A.!!$R2 | 1153 |
2 | TraesCS3A01G537300 | chr7A | 27645778 | 27646929 | 1151 | True | 2019.000000 | 2019 | 98.267000 | 2461 | 3614 | 1 | chr7A.!!$R1 | 1153 |
3 | TraesCS3A01G537300 | chr6A | 595589445 | 595590595 | 1150 | False | 2008.000000 | 2008 | 98.095000 | 2460 | 3614 | 1 | chr6A.!!$F1 | 1154 |
4 | TraesCS3A01G537300 | chr2A | 203582792 | 203583787 | 995 | False | 1729.000000 | 1729 | 97.992000 | 2461 | 3456 | 1 | chr2A.!!$F1 | 995 |
5 | TraesCS3A01G537300 | chr6D | 463443910 | 463444981 | 1071 | True | 1703.000000 | 1703 | 95.349000 | 2543 | 3614 | 1 | chr6D.!!$R1 | 1071 |
6 | TraesCS3A01G537300 | chr5B | 155287848 | 155288919 | 1071 | False | 1664.000000 | 1664 | 94.693000 | 2543 | 3614 | 1 | chr5B.!!$F1 | 1071 |
7 | TraesCS3A01G537300 | chr7D | 10754507 | 10755589 | 1082 | False | 896.000000 | 1640 | 97.049500 | 2461 | 3576 | 2 | chr7D.!!$F4 | 1115 |
8 | TraesCS3A01G537300 | chr2D | 7470984 | 7472065 | 1081 | True | 893.500000 | 1635 | 96.999000 | 2461 | 3576 | 2 | chr2D.!!$R1 | 1115 |
9 | TraesCS3A01G537300 | chr1B | 130551549 | 130552616 | 1067 | True | 1629.000000 | 1629 | 94.206000 | 2543 | 3610 | 1 | chr1B.!!$R1 | 1067 |
10 | TraesCS3A01G537300 | chr3D | 613597935 | 613601539 | 3604 | True | 412.640000 | 1413 | 90.739000 | 284 | 2395 | 5 | chr3D.!!$R2 | 2111 |
11 | TraesCS3A01G537300 | chr3B | 822819356 | 822821268 | 1912 | True | 617.666667 | 1410 | 90.110333 | 688 | 2395 | 3 | chr3B.!!$R1 | 1707 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
586 | 598 | 0.032813 | AGTAATTCCGGACGGAGGGA | 60.033 | 55.0 | 13.64 | 0.0 | 46.06 | 4.20 | F |
1753 | 3423 | 0.165944 | GGCGACCGTTGTCATTCTTG | 59.834 | 55.0 | 0.00 | 0.0 | 41.85 | 3.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2446 | 4126 | 0.035739 | AAAGTTTTCTCGGCCCGCTA | 59.964 | 50.0 | 0.0 | 0.0 | 0.0 | 4.26 | R |
2990 | 4670 | 2.234300 | TTCCTCGACTGTTTGACACC | 57.766 | 50.0 | 0.0 | 0.0 | 0.0 | 4.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
58 | 59 | 6.869206 | ACTTAAGTACTGCCTATCTTTGGA | 57.131 | 37.500 | 6.26 | 0.00 | 0.00 | 3.53 |
59 | 60 | 7.253905 | ACTTAAGTACTGCCTATCTTTGGAA | 57.746 | 36.000 | 6.26 | 0.00 | 0.00 | 3.53 |
60 | 61 | 7.686434 | ACTTAAGTACTGCCTATCTTTGGAAA | 58.314 | 34.615 | 6.26 | 0.00 | 0.00 | 3.13 |
61 | 62 | 7.824779 | ACTTAAGTACTGCCTATCTTTGGAAAG | 59.175 | 37.037 | 6.26 | 0.00 | 37.36 | 2.62 |
77 | 78 | 9.253832 | TCTTTGGAAAGAAATTAATATGAGCCA | 57.746 | 29.630 | 0.00 | 0.00 | 41.75 | 4.75 |
80 | 81 | 9.425248 | TTGGAAAGAAATTAATATGAGCCATCT | 57.575 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
96 | 97 | 8.206126 | TGAGCCATCTATAGAATATTTGGTGA | 57.794 | 34.615 | 16.94 | 3.39 | 0.00 | 4.02 |
97 | 98 | 8.659527 | TGAGCCATCTATAGAATATTTGGTGAA | 58.340 | 33.333 | 16.94 | 4.44 | 0.00 | 3.18 |
98 | 99 | 9.507329 | GAGCCATCTATAGAATATTTGGTGAAA | 57.493 | 33.333 | 16.94 | 0.00 | 0.00 | 2.69 |
146 | 147 | 8.786898 | TGAATCTAATGCTACTAATTTGATGGC | 58.213 | 33.333 | 0.00 | 0.00 | 32.33 | 4.40 |
147 | 148 | 8.696043 | AATCTAATGCTACTAATTTGATGGCA | 57.304 | 30.769 | 0.00 | 0.00 | 32.33 | 4.92 |
148 | 149 | 8.874744 | ATCTAATGCTACTAATTTGATGGCAT | 57.125 | 30.769 | 0.00 | 0.00 | 40.04 | 4.40 |
149 | 150 | 9.964354 | ATCTAATGCTACTAATTTGATGGCATA | 57.036 | 29.630 | 0.00 | 0.00 | 37.85 | 3.14 |
150 | 151 | 9.791801 | TCTAATGCTACTAATTTGATGGCATAA | 57.208 | 29.630 | 0.00 | 0.00 | 37.85 | 1.90 |
153 | 154 | 9.701098 | AATGCTACTAATTTGATGGCATAAATG | 57.299 | 29.630 | 0.00 | 0.32 | 37.85 | 2.32 |
154 | 155 | 8.236585 | TGCTACTAATTTGATGGCATAAATGT | 57.763 | 30.769 | 0.00 | 5.58 | 0.00 | 2.71 |
155 | 156 | 8.694540 | TGCTACTAATTTGATGGCATAAATGTT | 58.305 | 29.630 | 0.00 | 0.57 | 0.00 | 2.71 |
156 | 157 | 8.971321 | GCTACTAATTTGATGGCATAAATGTTG | 58.029 | 33.333 | 0.00 | 5.40 | 0.00 | 3.33 |
157 | 158 | 9.467258 | CTACTAATTTGATGGCATAAATGTTGG | 57.533 | 33.333 | 0.00 | 2.80 | 0.00 | 3.77 |
158 | 159 | 7.850193 | ACTAATTTGATGGCATAAATGTTGGT | 58.150 | 30.769 | 0.00 | 3.42 | 0.00 | 3.67 |
159 | 160 | 7.981225 | ACTAATTTGATGGCATAAATGTTGGTC | 59.019 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
160 | 161 | 5.999205 | TTTGATGGCATAAATGTTGGTCT | 57.001 | 34.783 | 0.00 | 0.00 | 0.00 | 3.85 |
161 | 162 | 7.658525 | ATTTGATGGCATAAATGTTGGTCTA | 57.341 | 32.000 | 0.00 | 0.00 | 0.00 | 2.59 |
162 | 163 | 7.658525 | TTTGATGGCATAAATGTTGGTCTAT | 57.341 | 32.000 | 0.00 | 0.00 | 0.00 | 1.98 |
163 | 164 | 7.658525 | TTGATGGCATAAATGTTGGTCTATT | 57.341 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
164 | 165 | 8.759481 | TTGATGGCATAAATGTTGGTCTATTA | 57.241 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
165 | 166 | 8.938801 | TGATGGCATAAATGTTGGTCTATTAT | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
166 | 167 | 9.365906 | TGATGGCATAAATGTTGGTCTATTATT | 57.634 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
167 | 168 | 9.630098 | GATGGCATAAATGTTGGTCTATTATTG | 57.370 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
168 | 169 | 8.532186 | TGGCATAAATGTTGGTCTATTATTGT | 57.468 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
169 | 170 | 8.412456 | TGGCATAAATGTTGGTCTATTATTGTG | 58.588 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
170 | 171 | 8.413229 | GGCATAAATGTTGGTCTATTATTGTGT | 58.587 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
176 | 177 | 9.801873 | AATGTTGGTCTATTATTGTGTAAATGC | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
177 | 178 | 7.468441 | TGTTGGTCTATTATTGTGTAAATGCG | 58.532 | 34.615 | 0.00 | 0.00 | 0.00 | 4.73 |
178 | 179 | 7.334671 | TGTTGGTCTATTATTGTGTAAATGCGA | 59.665 | 33.333 | 0.00 | 0.00 | 0.00 | 5.10 |
179 | 180 | 8.342634 | GTTGGTCTATTATTGTGTAAATGCGAT | 58.657 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
180 | 181 | 8.083462 | TGGTCTATTATTGTGTAAATGCGATC | 57.917 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
181 | 182 | 7.713073 | TGGTCTATTATTGTGTAAATGCGATCA | 59.287 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
182 | 183 | 8.556194 | GGTCTATTATTGTGTAAATGCGATCAA | 58.444 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
183 | 184 | 9.929722 | GTCTATTATTGTGTAAATGCGATCAAA | 57.070 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
184 | 185 | 9.929722 | TCTATTATTGTGTAAATGCGATCAAAC | 57.070 | 29.630 | 0.00 | 0.00 | 0.00 | 2.93 |
185 | 186 | 9.715123 | CTATTATTGTGTAAATGCGATCAAACA | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
189 | 190 | 8.978564 | ATTGTGTAAATGCGATCAAACATAAA | 57.021 | 26.923 | 0.00 | 0.00 | 0.00 | 1.40 |
190 | 191 | 8.803201 | TTGTGTAAATGCGATCAAACATAAAA | 57.197 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
191 | 192 | 8.803201 | TGTGTAAATGCGATCAAACATAAAAA | 57.197 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
214 | 215 | 9.676195 | AAAAAGTTTGACTTTCCAACAAAATTG | 57.324 | 25.926 | 6.53 | 0.00 | 46.78 | 2.32 |
215 | 216 | 6.983474 | AGTTTGACTTTCCAACAAAATTGG | 57.017 | 33.333 | 0.00 | 0.00 | 40.87 | 3.16 |
216 | 217 | 6.706295 | AGTTTGACTTTCCAACAAAATTGGA | 58.294 | 32.000 | 4.24 | 4.24 | 46.08 | 3.53 |
225 | 226 | 6.142818 | TCCAACAAAATTGGAAGTACACTG | 57.857 | 37.500 | 5.91 | 0.00 | 44.90 | 3.66 |
226 | 227 | 5.654650 | TCCAACAAAATTGGAAGTACACTGT | 59.345 | 36.000 | 5.91 | 0.00 | 44.90 | 3.55 |
227 | 228 | 6.153680 | TCCAACAAAATTGGAAGTACACTGTT | 59.846 | 34.615 | 5.91 | 0.00 | 44.90 | 3.16 |
228 | 229 | 6.816140 | CCAACAAAATTGGAAGTACACTGTTT | 59.184 | 34.615 | 0.00 | 0.00 | 42.06 | 2.83 |
229 | 230 | 7.010091 | CCAACAAAATTGGAAGTACACTGTTTC | 59.990 | 37.037 | 0.00 | 0.00 | 42.06 | 2.78 |
230 | 231 | 7.164230 | ACAAAATTGGAAGTACACTGTTTCA | 57.836 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
231 | 232 | 7.607250 | ACAAAATTGGAAGTACACTGTTTCAA | 58.393 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
232 | 233 | 7.759433 | ACAAAATTGGAAGTACACTGTTTCAAG | 59.241 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
233 | 234 | 6.391227 | AATTGGAAGTACACTGTTTCAAGG | 57.609 | 37.500 | 0.00 | 0.00 | 0.00 | 3.61 |
234 | 235 | 4.764050 | TGGAAGTACACTGTTTCAAGGA | 57.236 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
235 | 236 | 4.448210 | TGGAAGTACACTGTTTCAAGGAC | 58.552 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
236 | 237 | 3.493503 | GGAAGTACACTGTTTCAAGGACG | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
237 | 238 | 4.365723 | GAAGTACACTGTTTCAAGGACGA | 58.634 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
238 | 239 | 4.395959 | AGTACACTGTTTCAAGGACGAA | 57.604 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
239 | 240 | 4.369182 | AGTACACTGTTTCAAGGACGAAG | 58.631 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
240 | 241 | 2.561569 | ACACTGTTTCAAGGACGAAGG | 58.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
241 | 242 | 1.873591 | CACTGTTTCAAGGACGAAGGG | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
242 | 243 | 1.766496 | ACTGTTTCAAGGACGAAGGGA | 59.234 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
243 | 244 | 2.224305 | ACTGTTTCAAGGACGAAGGGAG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
244 | 245 | 1.766496 | TGTTTCAAGGACGAAGGGAGT | 59.234 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
245 | 246 | 2.967201 | TGTTTCAAGGACGAAGGGAGTA | 59.033 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
246 | 247 | 3.006537 | TGTTTCAAGGACGAAGGGAGTAG | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
247 | 248 | 1.183549 | TCAAGGACGAAGGGAGTAGC | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
248 | 249 | 0.175989 | CAAGGACGAAGGGAGTAGCC | 59.824 | 60.000 | 0.00 | 0.00 | 0.00 | 3.93 |
249 | 250 | 0.041386 | AAGGACGAAGGGAGTAGCCT | 59.959 | 55.000 | 0.00 | 0.00 | 36.66 | 4.58 |
250 | 251 | 0.924823 | AGGACGAAGGGAGTAGCCTA | 59.075 | 55.000 | 0.00 | 0.00 | 36.66 | 3.93 |
251 | 252 | 1.031235 | GGACGAAGGGAGTAGCCTAC | 58.969 | 60.000 | 0.00 | 0.00 | 36.66 | 3.18 |
252 | 253 | 1.409942 | GGACGAAGGGAGTAGCCTACT | 60.410 | 57.143 | 3.50 | 3.50 | 42.86 | 2.57 |
253 | 254 | 2.377073 | GACGAAGGGAGTAGCCTACTT | 58.623 | 52.381 | 5.74 | 0.00 | 39.59 | 2.24 |
254 | 255 | 2.099427 | GACGAAGGGAGTAGCCTACTTG | 59.901 | 54.545 | 5.74 | 0.00 | 39.59 | 3.16 |
255 | 256 | 2.291411 | ACGAAGGGAGTAGCCTACTTGA | 60.291 | 50.000 | 5.74 | 0.00 | 39.59 | 3.02 |
256 | 257 | 2.758979 | CGAAGGGAGTAGCCTACTTGAA | 59.241 | 50.000 | 5.74 | 0.00 | 39.59 | 2.69 |
257 | 258 | 3.181485 | CGAAGGGAGTAGCCTACTTGAAG | 60.181 | 52.174 | 5.74 | 0.00 | 39.59 | 3.02 |
258 | 259 | 2.112190 | AGGGAGTAGCCTACTTGAAGC | 58.888 | 52.381 | 5.74 | 0.00 | 39.59 | 3.86 |
259 | 260 | 1.139256 | GGGAGTAGCCTACTTGAAGCC | 59.861 | 57.143 | 5.74 | 2.01 | 39.59 | 4.35 |
260 | 261 | 1.831736 | GGAGTAGCCTACTTGAAGCCA | 59.168 | 52.381 | 5.74 | 0.00 | 39.59 | 4.75 |
261 | 262 | 2.159028 | GGAGTAGCCTACTTGAAGCCAG | 60.159 | 54.545 | 5.74 | 0.00 | 39.59 | 4.85 |
262 | 263 | 1.834263 | AGTAGCCTACTTGAAGCCAGG | 59.166 | 52.381 | 0.00 | 8.64 | 34.86 | 4.45 |
263 | 264 | 1.831736 | GTAGCCTACTTGAAGCCAGGA | 59.168 | 52.381 | 15.44 | 0.00 | 0.00 | 3.86 |
264 | 265 | 0.615850 | AGCCTACTTGAAGCCAGGAC | 59.384 | 55.000 | 15.44 | 8.12 | 0.00 | 3.85 |
265 | 266 | 0.324943 | GCCTACTTGAAGCCAGGACA | 59.675 | 55.000 | 15.44 | 0.00 | 0.00 | 4.02 |
266 | 267 | 1.065126 | GCCTACTTGAAGCCAGGACAT | 60.065 | 52.381 | 15.44 | 0.00 | 0.00 | 3.06 |
267 | 268 | 2.619074 | GCCTACTTGAAGCCAGGACATT | 60.619 | 50.000 | 15.44 | 0.00 | 0.00 | 2.71 |
268 | 269 | 3.274288 | CCTACTTGAAGCCAGGACATTC | 58.726 | 50.000 | 7.48 | 0.00 | 0.00 | 2.67 |
269 | 270 | 2.206576 | ACTTGAAGCCAGGACATTCC | 57.793 | 50.000 | 0.00 | 0.00 | 36.58 | 3.01 |
270 | 271 | 1.425066 | ACTTGAAGCCAGGACATTCCA | 59.575 | 47.619 | 0.00 | 0.00 | 39.61 | 3.53 |
271 | 272 | 2.158475 | ACTTGAAGCCAGGACATTCCAA | 60.158 | 45.455 | 0.00 | 0.00 | 39.61 | 3.53 |
272 | 273 | 2.205022 | TGAAGCCAGGACATTCCAAG | 57.795 | 50.000 | 0.00 | 0.00 | 39.61 | 3.61 |
273 | 274 | 0.813821 | GAAGCCAGGACATTCCAAGC | 59.186 | 55.000 | 0.00 | 0.00 | 39.61 | 4.01 |
274 | 275 | 0.613012 | AAGCCAGGACATTCCAAGCC | 60.613 | 55.000 | 0.00 | 0.00 | 39.61 | 4.35 |
275 | 276 | 1.304381 | GCCAGGACATTCCAAGCCA | 60.304 | 57.895 | 0.00 | 0.00 | 39.61 | 4.75 |
276 | 277 | 1.318158 | GCCAGGACATTCCAAGCCAG | 61.318 | 60.000 | 0.00 | 0.00 | 39.61 | 4.85 |
277 | 278 | 0.038744 | CCAGGACATTCCAAGCCAGT | 59.961 | 55.000 | 0.00 | 0.00 | 39.61 | 4.00 |
278 | 279 | 1.171308 | CAGGACATTCCAAGCCAGTG | 58.829 | 55.000 | 0.00 | 0.00 | 39.61 | 3.66 |
279 | 280 | 0.038744 | AGGACATTCCAAGCCAGTGG | 59.961 | 55.000 | 4.20 | 4.20 | 39.61 | 4.00 |
280 | 281 | 0.967380 | GGACATTCCAAGCCAGTGGG | 60.967 | 60.000 | 12.15 | 0.00 | 39.34 | 4.61 |
320 | 321 | 2.523168 | TGGCTCGACCACAGGACA | 60.523 | 61.111 | 3.02 | 0.00 | 46.36 | 4.02 |
324 | 325 | 0.033504 | GCTCGACCACAGGACAGAAA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
325 | 326 | 1.338200 | GCTCGACCACAGGACAGAAAT | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
334 | 335 | 0.486879 | AGGACAGAAATGGGCCCAAA | 59.513 | 50.000 | 32.58 | 6.36 | 0.00 | 3.28 |
340 | 341 | 1.079323 | AGAAATGGGCCCAAACAGGAT | 59.921 | 47.619 | 32.58 | 7.43 | 41.22 | 3.24 |
361 | 362 | 1.683365 | GGCATCCAGGTGGCACATT | 60.683 | 57.895 | 20.82 | 3.79 | 44.52 | 2.71 |
363 | 364 | 0.108520 | GCATCCAGGTGGCACATTTG | 60.109 | 55.000 | 20.82 | 13.70 | 44.52 | 2.32 |
374 | 375 | 1.588082 | CACATTTGGTGGCTGAGGC | 59.412 | 57.895 | 0.00 | 0.00 | 44.04 | 4.70 |
383 | 384 | 1.486726 | GGTGGCTGAGGCTTAGTACAT | 59.513 | 52.381 | 7.74 | 0.00 | 38.73 | 2.29 |
384 | 385 | 2.483889 | GGTGGCTGAGGCTTAGTACATC | 60.484 | 54.545 | 7.74 | 4.63 | 38.73 | 3.06 |
385 | 386 | 1.762957 | TGGCTGAGGCTTAGTACATCC | 59.237 | 52.381 | 7.74 | 0.86 | 38.73 | 3.51 |
386 | 387 | 1.762957 | GGCTGAGGCTTAGTACATCCA | 59.237 | 52.381 | 8.20 | 0.00 | 38.73 | 3.41 |
387 | 388 | 2.224161 | GGCTGAGGCTTAGTACATCCAG | 60.224 | 54.545 | 8.20 | 0.00 | 38.73 | 3.86 |
388 | 389 | 2.695666 | GCTGAGGCTTAGTACATCCAGA | 59.304 | 50.000 | 8.20 | 0.00 | 35.22 | 3.86 |
389 | 390 | 3.491792 | GCTGAGGCTTAGTACATCCAGAC | 60.492 | 52.174 | 8.20 | 0.00 | 35.22 | 3.51 |
390 | 391 | 3.957497 | CTGAGGCTTAGTACATCCAGACT | 59.043 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
391 | 392 | 3.954904 | TGAGGCTTAGTACATCCAGACTC | 59.045 | 47.826 | 8.74 | 8.74 | 41.26 | 3.36 |
392 | 393 | 3.301274 | AGGCTTAGTACATCCAGACTCC | 58.699 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
393 | 394 | 3.031736 | GGCTTAGTACATCCAGACTCCA | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
398 | 399 | 1.899814 | GTACATCCAGACTCCACCACA | 59.100 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
399 | 400 | 1.434188 | ACATCCAGACTCCACCACAA | 58.566 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
401 | 402 | 0.321671 | ATCCAGACTCCACCACAACG | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
415 | 416 | 3.261580 | CCACAACGACATGCTAAGATGA | 58.738 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
416 | 417 | 3.308053 | CCACAACGACATGCTAAGATGAG | 59.692 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
417 | 418 | 4.176271 | CACAACGACATGCTAAGATGAGA | 58.824 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
418 | 419 | 4.807834 | CACAACGACATGCTAAGATGAGAT | 59.192 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
419 | 420 | 4.807834 | ACAACGACATGCTAAGATGAGATG | 59.192 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
429 | 430 | 5.653330 | TGCTAAGATGAGATGCATGGAAAAA | 59.347 | 36.000 | 2.46 | 0.00 | 37.34 | 1.94 |
430 | 431 | 6.183360 | TGCTAAGATGAGATGCATGGAAAAAG | 60.183 | 38.462 | 2.46 | 0.00 | 37.34 | 2.27 |
431 | 432 | 6.039047 | GCTAAGATGAGATGCATGGAAAAAGA | 59.961 | 38.462 | 2.46 | 0.00 | 37.34 | 2.52 |
432 | 433 | 7.255520 | GCTAAGATGAGATGCATGGAAAAAGAT | 60.256 | 37.037 | 2.46 | 0.00 | 37.34 | 2.40 |
433 | 434 | 6.636562 | AGATGAGATGCATGGAAAAAGATC | 57.363 | 37.500 | 2.46 | 0.00 | 37.34 | 2.75 |
448 | 449 | 8.209584 | TGGAAAAAGATCAATCAAACCATTCAA | 58.790 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
465 | 466 | 4.669206 | TTCAACCATGCATGTCAAAACT | 57.331 | 36.364 | 24.58 | 0.00 | 0.00 | 2.66 |
475 | 476 | 7.910162 | CCATGCATGTCAAAACTATTACACTAC | 59.090 | 37.037 | 24.58 | 0.00 | 0.00 | 2.73 |
476 | 477 | 8.668353 | CATGCATGTCAAAACTATTACACTACT | 58.332 | 33.333 | 18.91 | 0.00 | 0.00 | 2.57 |
477 | 478 | 8.251750 | TGCATGTCAAAACTATTACACTACTC | 57.748 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
479 | 480 | 7.201617 | GCATGTCAAAACTATTACACTACTCCC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
485 | 497 | 4.459330 | ACTATTACACTACTCCCTCCGTC | 58.541 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
487 | 499 | 2.414994 | TACACTACTCCCTCCGTCTG | 57.585 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
489 | 501 | 0.034380 | CACTACTCCCTCCGTCTGGA | 60.034 | 60.000 | 0.00 | 0.00 | 43.88 | 3.86 |
492 | 504 | 2.292323 | ACTACTCCCTCCGTCTGGAAAT | 60.292 | 50.000 | 0.00 | 0.00 | 45.87 | 2.17 |
493 | 505 | 2.544844 | ACTCCCTCCGTCTGGAAATA | 57.455 | 50.000 | 0.00 | 0.00 | 45.87 | 1.40 |
497 | 509 | 1.067212 | CCCTCCGTCTGGAAATACTCG | 59.933 | 57.143 | 0.00 | 0.00 | 45.87 | 4.18 |
498 | 510 | 1.749634 | CCTCCGTCTGGAAATACTCGT | 59.250 | 52.381 | 0.00 | 0.00 | 45.87 | 4.18 |
499 | 511 | 2.223525 | CCTCCGTCTGGAAATACTCGTC | 60.224 | 54.545 | 0.00 | 0.00 | 45.87 | 4.20 |
502 | 514 | 3.256383 | TCCGTCTGGAAATACTCGTCAAA | 59.744 | 43.478 | 0.00 | 0.00 | 42.85 | 2.69 |
506 | 518 | 5.404366 | CGTCTGGAAATACTCGTCAAAGAAA | 59.596 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
510 | 522 | 6.234920 | TGGAAATACTCGTCAAAGAAATGGA | 58.765 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
513 | 525 | 7.148239 | GGAAATACTCGTCAAAGAAATGGATGT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
515 | 527 | 8.964476 | AATACTCGTCAAAGAAATGGATGTAT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
516 | 528 | 6.668541 | ACTCGTCAAAGAAATGGATGTATG | 57.331 | 37.500 | 0.00 | 0.00 | 0.00 | 2.39 |
517 | 529 | 6.173339 | ACTCGTCAAAGAAATGGATGTATGT | 58.827 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
518 | 530 | 7.327975 | ACTCGTCAAAGAAATGGATGTATGTA | 58.672 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
519 | 531 | 7.492669 | ACTCGTCAAAGAAATGGATGTATGTAG | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
521 | 533 | 7.491372 | TCGTCAAAGAAATGGATGTATGTAGAC | 59.509 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
522 | 534 | 7.277760 | CGTCAAAGAAATGGATGTATGTAGACA | 59.722 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
524 | 536 | 9.112725 | TCAAAGAAATGGATGTATGTAGACATG | 57.887 | 33.333 | 5.39 | 0.00 | 40.18 | 3.21 |
525 | 537 | 8.896744 | CAAAGAAATGGATGTATGTAGACATGT | 58.103 | 33.333 | 0.00 | 0.00 | 40.18 | 3.21 |
526 | 538 | 9.466497 | AAAGAAATGGATGTATGTAGACATGTT | 57.534 | 29.630 | 0.00 | 0.00 | 40.18 | 2.71 |
527 | 539 | 9.466497 | AAGAAATGGATGTATGTAGACATGTTT | 57.534 | 29.630 | 0.00 | 0.00 | 40.18 | 2.83 |
528 | 540 | 9.466497 | AGAAATGGATGTATGTAGACATGTTTT | 57.534 | 29.630 | 0.00 | 0.00 | 40.18 | 2.43 |
531 | 543 | 9.905713 | AATGGATGTATGTAGACATGTTTTAGT | 57.094 | 29.630 | 0.00 | 0.00 | 40.18 | 2.24 |
532 | 544 | 9.905713 | ATGGATGTATGTAGACATGTTTTAGTT | 57.094 | 29.630 | 0.00 | 0.00 | 40.18 | 2.24 |
533 | 545 | 9.733556 | TGGATGTATGTAGACATGTTTTAGTTT | 57.266 | 29.630 | 0.00 | 0.00 | 40.18 | 2.66 |
561 | 573 | 9.618890 | AGATACATCCATTTTTATCCATATCGG | 57.381 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
563 | 575 | 5.123820 | ACATCCATTTTTATCCATATCGGCG | 59.876 | 40.000 | 0.00 | 0.00 | 33.14 | 6.46 |
564 | 576 | 4.900684 | TCCATTTTTATCCATATCGGCGA | 58.099 | 39.130 | 13.87 | 13.87 | 33.14 | 5.54 |
565 | 577 | 4.693566 | TCCATTTTTATCCATATCGGCGAC | 59.306 | 41.667 | 13.76 | 0.00 | 33.14 | 5.19 |
566 | 578 | 4.454161 | CCATTTTTATCCATATCGGCGACA | 59.546 | 41.667 | 13.76 | 0.00 | 33.14 | 4.35 |
567 | 579 | 5.049060 | CCATTTTTATCCATATCGGCGACAA | 60.049 | 40.000 | 13.76 | 3.44 | 33.14 | 3.18 |
569 | 581 | 4.330944 | TTTATCCATATCGGCGACAAGT | 57.669 | 40.909 | 13.76 | 0.00 | 33.14 | 3.16 |
570 | 582 | 5.456548 | TTTATCCATATCGGCGACAAGTA | 57.543 | 39.130 | 13.76 | 0.00 | 33.14 | 2.24 |
571 | 583 | 5.456548 | TTATCCATATCGGCGACAAGTAA | 57.543 | 39.130 | 13.76 | 4.52 | 33.14 | 2.24 |
572 | 584 | 4.537135 | ATCCATATCGGCGACAAGTAAT | 57.463 | 40.909 | 13.76 | 0.00 | 33.14 | 1.89 |
574 | 586 | 4.304110 | TCCATATCGGCGACAAGTAATTC | 58.696 | 43.478 | 13.76 | 0.00 | 33.14 | 2.17 |
576 | 588 | 1.567504 | ATCGGCGACAAGTAATTCCG | 58.432 | 50.000 | 13.76 | 0.00 | 38.34 | 4.30 |
577 | 589 | 0.458889 | TCGGCGACAAGTAATTCCGG | 60.459 | 55.000 | 4.99 | 0.00 | 37.65 | 5.14 |
578 | 590 | 0.458889 | CGGCGACAAGTAATTCCGGA | 60.459 | 55.000 | 0.00 | 0.00 | 33.85 | 5.14 |
579 | 591 | 1.004595 | GGCGACAAGTAATTCCGGAC | 58.995 | 55.000 | 1.83 | 0.00 | 0.00 | 4.79 |
580 | 592 | 0.643820 | GCGACAAGTAATTCCGGACG | 59.356 | 55.000 | 1.83 | 1.53 | 0.00 | 4.79 |
581 | 593 | 1.274596 | CGACAAGTAATTCCGGACGG | 58.725 | 55.000 | 1.83 | 3.96 | 0.00 | 4.79 |
582 | 594 | 1.135315 | CGACAAGTAATTCCGGACGGA | 60.135 | 52.381 | 1.83 | 9.76 | 43.52 | 4.69 |
583 | 595 | 2.537401 | GACAAGTAATTCCGGACGGAG | 58.463 | 52.381 | 13.64 | 3.15 | 46.06 | 4.63 |
585 | 597 | 0.828677 | AAGTAATTCCGGACGGAGGG | 59.171 | 55.000 | 13.64 | 0.00 | 46.06 | 4.30 |
586 | 598 | 0.032813 | AGTAATTCCGGACGGAGGGA | 60.033 | 55.000 | 13.64 | 0.00 | 46.06 | 4.20 |
587 | 599 | 0.388294 | GTAATTCCGGACGGAGGGAG | 59.612 | 60.000 | 13.64 | 0.00 | 46.06 | 4.30 |
588 | 600 | 0.032813 | TAATTCCGGACGGAGGGAGT | 60.033 | 55.000 | 13.64 | 1.45 | 46.06 | 3.85 |
590 | 602 | 0.754587 | ATTCCGGACGGAGGGAGTAC | 60.755 | 60.000 | 13.64 | 0.00 | 46.06 | 2.73 |
591 | 603 | 1.856539 | TTCCGGACGGAGGGAGTACT | 61.857 | 60.000 | 13.64 | 0.00 | 46.06 | 2.73 |
599 | 1435 | 3.029570 | ACGGAGGGAGTACTTGTATTCC | 58.970 | 50.000 | 12.20 | 12.20 | 0.00 | 3.01 |
686 | 1630 | 7.188468 | ACAAATAATTTCCACAACAACATGC | 57.812 | 32.000 | 0.00 | 0.00 | 0.00 | 4.06 |
705 | 1649 | 3.211865 | TGCGGAGTATCATCTAGTTCGT | 58.788 | 45.455 | 0.00 | 0.00 | 36.25 | 3.85 |
729 | 1673 | 3.585748 | ATGTCGTCGTTTGTTGTCTTG | 57.414 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
815 | 1760 | 7.560368 | AGTACATCTAAGACATCCTGGAAAAG | 58.440 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
846 | 1791 | 7.574607 | CCAACTCAAAGTATCTATAACCCCTT | 58.425 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
853 | 1817 | 9.331282 | CAAAGTATCTATAACCCCTTCTCAAAG | 57.669 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
887 | 1851 | 6.014647 | TGAGAAGTTAACCTAGAACTAGCCA | 58.985 | 40.000 | 0.88 | 0.00 | 36.10 | 4.75 |
909 | 1930 | 8.548877 | AGCCATTCTTCTAGTCCTTAAATACAA | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
917 | 1938 | 7.618137 | TCTAGTCCTTAAATACAACTCAACCC | 58.382 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
963 | 1984 | 4.359971 | ACTTAACTTTTCAAAACGCCGT | 57.640 | 36.364 | 0.00 | 0.00 | 0.00 | 5.68 |
974 | 1995 | 1.658994 | AAACGCCGTGACTTCTTCAA | 58.341 | 45.000 | 0.00 | 0.00 | 35.39 | 2.69 |
980 | 2001 | 3.326747 | GCCGTGACTTCTTCAACTACAT | 58.673 | 45.455 | 0.00 | 0.00 | 35.39 | 2.29 |
999 | 2020 | 1.852157 | TTGACCCTCAGCCCATGTCC | 61.852 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1035 | 2056 | 3.263941 | GCCACCGCGAGTTTCATT | 58.736 | 55.556 | 8.23 | 0.00 | 0.00 | 2.57 |
1056 | 2078 | 2.283173 | TCTCGAGCTCTGGTGGCA | 60.283 | 61.111 | 12.85 | 0.00 | 0.00 | 4.92 |
1057 | 2079 | 1.674764 | CTCTCGAGCTCTGGTGGCAT | 61.675 | 60.000 | 12.85 | 0.00 | 0.00 | 4.40 |
1072 | 2094 | 1.884926 | GCATGTGCGACCTCTAGCC | 60.885 | 63.158 | 0.00 | 0.00 | 0.00 | 3.93 |
1092 | 2114 | 2.106683 | CCGACCCATGCGAGGTTTC | 61.107 | 63.158 | 0.00 | 0.00 | 37.88 | 2.78 |
1094 | 2116 | 1.002624 | GACCCATGCGAGGTTTCCA | 60.003 | 57.895 | 0.00 | 0.00 | 37.88 | 3.53 |
1095 | 2117 | 0.394352 | GACCCATGCGAGGTTTCCAT | 60.394 | 55.000 | 0.00 | 0.00 | 37.88 | 3.41 |
1096 | 2118 | 0.394352 | ACCCATGCGAGGTTTCCATC | 60.394 | 55.000 | 0.00 | 0.00 | 32.05 | 3.51 |
1204 | 2242 | 9.848710 | AGGAGTTAAAAATTTAGGATAGTAGGC | 57.151 | 33.333 | 0.00 | 0.00 | 0.00 | 3.93 |
1226 | 2771 | 8.298729 | AGGCTATTTAGATGAAAGGGAAAAAG | 57.701 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
1240 | 2864 | 5.583932 | AGGGAAAAAGAAATAGTGAGGCAT | 58.416 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
1263 | 2887 | 1.443802 | AGCCGACAAAAGAAGCTAGC | 58.556 | 50.000 | 6.62 | 6.62 | 30.46 | 3.42 |
1307 | 2946 | 2.303890 | TGCTCATCATCAGTTGTCCACT | 59.696 | 45.455 | 0.00 | 0.00 | 35.35 | 4.00 |
1308 | 2947 | 3.515104 | TGCTCATCATCAGTTGTCCACTA | 59.485 | 43.478 | 0.00 | 0.00 | 32.76 | 2.74 |
1309 | 2948 | 4.118410 | GCTCATCATCAGTTGTCCACTAG | 58.882 | 47.826 | 0.00 | 0.00 | 32.76 | 2.57 |
1310 | 2949 | 4.142071 | GCTCATCATCAGTTGTCCACTAGA | 60.142 | 45.833 | 0.00 | 0.00 | 32.76 | 2.43 |
1311 | 2950 | 5.588958 | TCATCATCAGTTGTCCACTAGAG | 57.411 | 43.478 | 0.00 | 0.00 | 32.76 | 2.43 |
1347 | 2995 | 2.335011 | GTTGTCCCTTTGCGTGCC | 59.665 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
1350 | 2998 | 3.056328 | GTCCCTTTGCGTGCCCTC | 61.056 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1351 | 2999 | 3.249189 | TCCCTTTGCGTGCCCTCT | 61.249 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
1353 | 3001 | 2.629656 | CCCTTTGCGTGCCCTCTTG | 61.630 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
1355 | 3003 | 0.605319 | CCTTTGCGTGCCCTCTTGTA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1356 | 3004 | 1.453155 | CTTTGCGTGCCCTCTTGTAT | 58.547 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1357 | 3005 | 1.398390 | CTTTGCGTGCCCTCTTGTATC | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
1358 | 3006 | 0.613260 | TTGCGTGCCCTCTTGTATCT | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1360 | 3008 | 0.461961 | GCGTGCCCTCTTGTATCTCT | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1361 | 3009 | 1.681793 | GCGTGCCCTCTTGTATCTCTA | 59.318 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
1362 | 3010 | 2.287909 | GCGTGCCCTCTTGTATCTCTAG | 60.288 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
1363 | 3011 | 2.952978 | CGTGCCCTCTTGTATCTCTAGT | 59.047 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1364 | 3012 | 4.135306 | CGTGCCCTCTTGTATCTCTAGTA | 58.865 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
1365 | 3013 | 4.214545 | CGTGCCCTCTTGTATCTCTAGTAG | 59.785 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1366 | 3014 | 5.378332 | GTGCCCTCTTGTATCTCTAGTAGA | 58.622 | 45.833 | 0.00 | 0.00 | 39.02 | 2.59 |
1367 | 3015 | 5.828859 | GTGCCCTCTTGTATCTCTAGTAGAA | 59.171 | 44.000 | 0.64 | 0.00 | 37.89 | 2.10 |
1368 | 3016 | 6.492087 | GTGCCCTCTTGTATCTCTAGTAGAAT | 59.508 | 42.308 | 0.64 | 1.48 | 37.89 | 2.40 |
1386 | 3034 | 8.774546 | AGTAGAATTCTAGATCCATCAACTCA | 57.225 | 34.615 | 15.58 | 0.00 | 0.00 | 3.41 |
1388 | 3036 | 9.474920 | GTAGAATTCTAGATCCATCAACTCAAG | 57.525 | 37.037 | 15.58 | 0.00 | 0.00 | 3.02 |
1390 | 3038 | 9.206690 | AGAATTCTAGATCCATCAACTCAAGTA | 57.793 | 33.333 | 6.06 | 0.00 | 0.00 | 2.24 |
1405 | 3060 | 0.462759 | AAGTAGCGCTTGATCCAGCC | 60.463 | 55.000 | 18.68 | 6.24 | 36.31 | 4.85 |
1433 | 3100 | 0.954449 | GATCCATGGAGCATCTGCCG | 60.954 | 60.000 | 25.01 | 0.00 | 43.38 | 5.69 |
1464 | 3131 | 1.611851 | CTGGAGGAGCTGGAGGTGT | 60.612 | 63.158 | 0.00 | 0.00 | 0.00 | 4.16 |
1556 | 3223 | 1.303317 | GTTCCGGCTGGTCAACCAT | 60.303 | 57.895 | 12.43 | 0.00 | 46.46 | 3.55 |
1753 | 3423 | 0.165944 | GGCGACCGTTGTCATTCTTG | 59.834 | 55.000 | 0.00 | 0.00 | 41.85 | 3.02 |
1907 | 3577 | 2.178890 | CCTGGATGAAGAGCAGCGC | 61.179 | 63.158 | 0.00 | 0.00 | 32.46 | 5.92 |
1943 | 3613 | 3.197790 | CGTGGCAGCATCTTCCGG | 61.198 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
2061 | 3737 | 4.056125 | GCGGCCTGCAGGTTTTCC | 62.056 | 66.667 | 32.81 | 23.50 | 45.45 | 3.13 |
2076 | 3752 | 1.451449 | TTTCCATGGTGGTAGGTGGT | 58.549 | 50.000 | 12.58 | 0.00 | 39.03 | 4.16 |
2077 | 3753 | 0.695924 | TTCCATGGTGGTAGGTGGTG | 59.304 | 55.000 | 12.58 | 0.00 | 39.03 | 4.17 |
2079 | 3755 | 0.404040 | CCATGGTGGTAGGTGGTGTT | 59.596 | 55.000 | 2.57 | 0.00 | 31.35 | 3.32 |
2080 | 3756 | 1.203001 | CCATGGTGGTAGGTGGTGTTT | 60.203 | 52.381 | 2.57 | 0.00 | 31.35 | 2.83 |
2081 | 3757 | 2.593026 | CATGGTGGTAGGTGGTGTTTT | 58.407 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
2084 | 3760 | 1.951602 | GGTGGTAGGTGGTGTTTTGTC | 59.048 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
2282 | 3959 | 1.216710 | GCTTGTCGTCAGGAGGAGG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
2292 | 3969 | 0.978146 | CAGGAGGAGGTGTACAGGGG | 60.978 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2362 | 4039 | 4.785453 | GGCTCCAAGGTCGGCCTG | 62.785 | 72.222 | 10.71 | 3.56 | 46.33 | 4.85 |
2395 | 4075 | 1.885388 | CGCCGTCGCCCAATCATAA | 60.885 | 57.895 | 0.00 | 0.00 | 0.00 | 1.90 |
2396 | 4076 | 1.831389 | CGCCGTCGCCCAATCATAAG | 61.831 | 60.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2397 | 4077 | 1.941812 | CCGTCGCCCAATCATAAGC | 59.058 | 57.895 | 0.00 | 0.00 | 0.00 | 3.09 |
2398 | 4078 | 0.813610 | CCGTCGCCCAATCATAAGCA | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2399 | 4079 | 1.229428 | CGTCGCCCAATCATAAGCAT | 58.771 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2400 | 4080 | 1.603802 | CGTCGCCCAATCATAAGCATT | 59.396 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
2401 | 4081 | 2.349817 | CGTCGCCCAATCATAAGCATTC | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2402 | 4082 | 2.618241 | GTCGCCCAATCATAAGCATTCA | 59.382 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2403 | 4083 | 3.254166 | GTCGCCCAATCATAAGCATTCAT | 59.746 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2404 | 4084 | 3.890756 | TCGCCCAATCATAAGCATTCATT | 59.109 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2405 | 4085 | 4.341806 | TCGCCCAATCATAAGCATTCATTT | 59.658 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2406 | 4086 | 5.051816 | CGCCCAATCATAAGCATTCATTTT | 58.948 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2407 | 4087 | 5.524646 | CGCCCAATCATAAGCATTCATTTTT | 59.475 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2430 | 4110 | 9.927668 | TTTTTCTTCTTCTTCTTGTCATTTTGT | 57.072 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2433 | 4113 | 8.964476 | TCTTCTTCTTCTTGTCATTTTGTACT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.73 |
2434 | 4114 | 9.046296 | TCTTCTTCTTCTTGTCATTTTGTACTC | 57.954 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2435 | 4115 | 7.730364 | TCTTCTTCTTGTCATTTTGTACTCC | 57.270 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2436 | 4116 | 7.509546 | TCTTCTTCTTGTCATTTTGTACTCCT | 58.490 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
2437 | 4117 | 8.647796 | TCTTCTTCTTGTCATTTTGTACTCCTA | 58.352 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
2438 | 4118 | 9.442047 | CTTCTTCTTGTCATTTTGTACTCCTAT | 57.558 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2446 | 4126 | 9.733556 | TGTCATTTTGTACTCCTATATGTTTGT | 57.266 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2450 | 4130 | 7.997107 | TTTGTACTCCTATATGTTTGTAGCG | 57.003 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2451 | 4131 | 6.080648 | TGTACTCCTATATGTTTGTAGCGG | 57.919 | 41.667 | 0.00 | 0.00 | 0.00 | 5.52 |
2452 | 4132 | 4.602340 | ACTCCTATATGTTTGTAGCGGG | 57.398 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
2453 | 4133 | 3.244112 | ACTCCTATATGTTTGTAGCGGGC | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 6.13 |
2454 | 4134 | 2.038033 | TCCTATATGTTTGTAGCGGGCC | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2455 | 4135 | 2.066262 | CTATATGTTTGTAGCGGGCCG | 58.934 | 52.381 | 24.35 | 24.35 | 0.00 | 6.13 |
2456 | 4136 | 0.466543 | ATATGTTTGTAGCGGGCCGA | 59.533 | 50.000 | 33.44 | 6.69 | 0.00 | 5.54 |
2457 | 4137 | 0.179094 | TATGTTTGTAGCGGGCCGAG | 60.179 | 55.000 | 33.44 | 0.84 | 0.00 | 4.63 |
2458 | 4138 | 1.895020 | ATGTTTGTAGCGGGCCGAGA | 61.895 | 55.000 | 33.44 | 13.92 | 0.00 | 4.04 |
2459 | 4139 | 1.375013 | GTTTGTAGCGGGCCGAGAA | 60.375 | 57.895 | 33.44 | 12.11 | 0.00 | 2.87 |
3158 | 4838 | 2.624838 | AGCAAACATGCAAGCTTACACT | 59.375 | 40.909 | 0.27 | 0.00 | 37.25 | 3.55 |
3290 | 4974 | 7.028962 | CACACACACAAAAATCAGAGAAGAAA | 58.971 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
3327 | 5011 | 1.376649 | AGAGTTGATGGGAAAGGCCT | 58.623 | 50.000 | 0.00 | 0.00 | 36.66 | 5.19 |
3397 | 5081 | 9.053840 | CATGCTTTATATTGTCTGAGAGAACAT | 57.946 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
32 | 33 | 9.650714 | TCCAAAGATAGGCAGTACTTAAGTATA | 57.349 | 33.333 | 18.03 | 6.94 | 32.54 | 1.47 |
33 | 34 | 8.548880 | TCCAAAGATAGGCAGTACTTAAGTAT | 57.451 | 34.615 | 18.03 | 4.91 | 32.54 | 2.12 |
34 | 35 | 7.966339 | TCCAAAGATAGGCAGTACTTAAGTA | 57.034 | 36.000 | 11.38 | 11.38 | 0.00 | 2.24 |
35 | 36 | 6.869206 | TCCAAAGATAGGCAGTACTTAAGT | 57.131 | 37.500 | 13.68 | 13.68 | 0.00 | 2.24 |
36 | 37 | 8.041323 | TCTTTCCAAAGATAGGCAGTACTTAAG | 58.959 | 37.037 | 0.00 | 0.00 | 39.95 | 1.85 |
37 | 38 | 7.913789 | TCTTTCCAAAGATAGGCAGTACTTAA | 58.086 | 34.615 | 0.00 | 0.00 | 39.95 | 1.85 |
38 | 39 | 7.490657 | TCTTTCCAAAGATAGGCAGTACTTA | 57.509 | 36.000 | 0.00 | 0.00 | 39.95 | 2.24 |
39 | 40 | 6.374417 | TCTTTCCAAAGATAGGCAGTACTT | 57.626 | 37.500 | 0.00 | 0.00 | 39.95 | 2.24 |
40 | 41 | 6.374417 | TTCTTTCCAAAGATAGGCAGTACT | 57.626 | 37.500 | 2.59 | 0.00 | 43.92 | 2.73 |
41 | 42 | 7.631717 | ATTTCTTTCCAAAGATAGGCAGTAC | 57.368 | 36.000 | 2.59 | 0.00 | 43.92 | 2.73 |
42 | 43 | 9.747898 | TTAATTTCTTTCCAAAGATAGGCAGTA | 57.252 | 29.630 | 2.59 | 0.00 | 43.92 | 2.74 |
43 | 44 | 8.650143 | TTAATTTCTTTCCAAAGATAGGCAGT | 57.350 | 30.769 | 2.59 | 0.00 | 43.92 | 4.40 |
51 | 52 | 9.253832 | TGGCTCATATTAATTTCTTTCCAAAGA | 57.746 | 29.630 | 0.00 | 0.00 | 42.91 | 2.52 |
54 | 55 | 9.425248 | AGATGGCTCATATTAATTTCTTTCCAA | 57.575 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
70 | 71 | 8.829746 | TCACCAAATATTCTATAGATGGCTCAT | 58.170 | 33.333 | 16.13 | 3.98 | 0.00 | 2.90 |
71 | 72 | 8.206126 | TCACCAAATATTCTATAGATGGCTCA | 57.794 | 34.615 | 16.13 | 0.00 | 0.00 | 4.26 |
72 | 73 | 9.507329 | TTTCACCAAATATTCTATAGATGGCTC | 57.493 | 33.333 | 16.13 | 0.00 | 0.00 | 4.70 |
120 | 121 | 8.786898 | GCCATCAAATTAGTAGCATTAGATTCA | 58.213 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
121 | 122 | 8.786898 | TGCCATCAAATTAGTAGCATTAGATTC | 58.213 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
122 | 123 | 8.696043 | TGCCATCAAATTAGTAGCATTAGATT | 57.304 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
123 | 124 | 8.874744 | ATGCCATCAAATTAGTAGCATTAGAT | 57.125 | 30.769 | 0.00 | 0.00 | 36.10 | 1.98 |
124 | 125 | 9.791801 | TTATGCCATCAAATTAGTAGCATTAGA | 57.208 | 29.630 | 0.00 | 0.00 | 39.89 | 2.10 |
127 | 128 | 9.701098 | CATTTATGCCATCAAATTAGTAGCATT | 57.299 | 29.630 | 0.00 | 0.00 | 39.89 | 3.56 |
128 | 129 | 8.863086 | ACATTTATGCCATCAAATTAGTAGCAT | 58.137 | 29.630 | 0.00 | 0.00 | 41.89 | 3.79 |
129 | 130 | 8.236585 | ACATTTATGCCATCAAATTAGTAGCA | 57.763 | 30.769 | 0.00 | 0.00 | 0.00 | 3.49 |
130 | 131 | 8.971321 | CAACATTTATGCCATCAAATTAGTAGC | 58.029 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
131 | 132 | 9.467258 | CCAACATTTATGCCATCAAATTAGTAG | 57.533 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
132 | 133 | 8.976353 | ACCAACATTTATGCCATCAAATTAGTA | 58.024 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
133 | 134 | 7.850193 | ACCAACATTTATGCCATCAAATTAGT | 58.150 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
134 | 135 | 8.199449 | AGACCAACATTTATGCCATCAAATTAG | 58.801 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
135 | 136 | 8.076910 | AGACCAACATTTATGCCATCAAATTA | 57.923 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
136 | 137 | 6.949715 | AGACCAACATTTATGCCATCAAATT | 58.050 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
137 | 138 | 6.549433 | AGACCAACATTTATGCCATCAAAT | 57.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
138 | 139 | 5.999205 | AGACCAACATTTATGCCATCAAA | 57.001 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
139 | 140 | 7.658525 | AATAGACCAACATTTATGCCATCAA | 57.341 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
140 | 141 | 8.938801 | ATAATAGACCAACATTTATGCCATCA | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
141 | 142 | 9.630098 | CAATAATAGACCAACATTTATGCCATC | 57.370 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
142 | 143 | 9.146586 | ACAATAATAGACCAACATTTATGCCAT | 57.853 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
143 | 144 | 8.412456 | CACAATAATAGACCAACATTTATGCCA | 58.588 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
144 | 145 | 8.413229 | ACACAATAATAGACCAACATTTATGCC | 58.587 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
150 | 151 | 9.801873 | GCATTTACACAATAATAGACCAACATT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
151 | 152 | 8.128582 | CGCATTTACACAATAATAGACCAACAT | 58.871 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
152 | 153 | 7.334671 | TCGCATTTACACAATAATAGACCAACA | 59.665 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
153 | 154 | 7.690228 | TCGCATTTACACAATAATAGACCAAC | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
154 | 155 | 7.851387 | TCGCATTTACACAATAATAGACCAA | 57.149 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
155 | 156 | 7.713073 | TGATCGCATTTACACAATAATAGACCA | 59.287 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
156 | 157 | 8.083462 | TGATCGCATTTACACAATAATAGACC | 57.917 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
157 | 158 | 9.929722 | TTTGATCGCATTTACACAATAATAGAC | 57.070 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
158 | 159 | 9.929722 | GTTTGATCGCATTTACACAATAATAGA | 57.070 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
159 | 160 | 9.715123 | TGTTTGATCGCATTTACACAATAATAG | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
164 | 165 | 8.978564 | TTTATGTTTGATCGCATTTACACAAT | 57.021 | 26.923 | 3.20 | 0.00 | 0.00 | 2.71 |
165 | 166 | 8.803201 | TTTTATGTTTGATCGCATTTACACAA | 57.197 | 26.923 | 3.20 | 0.00 | 0.00 | 3.33 |
166 | 167 | 8.803201 | TTTTTATGTTTGATCGCATTTACACA | 57.197 | 26.923 | 3.20 | 0.00 | 0.00 | 3.72 |
191 | 192 | 7.164803 | TCCAATTTTGTTGGAAAGTCAAACTT | 58.835 | 30.769 | 7.03 | 0.00 | 44.90 | 2.66 |
192 | 193 | 6.706295 | TCCAATTTTGTTGGAAAGTCAAACT | 58.294 | 32.000 | 7.03 | 0.00 | 44.90 | 2.66 |
193 | 194 | 6.976636 | TCCAATTTTGTTGGAAAGTCAAAC | 57.023 | 33.333 | 7.03 | 0.00 | 44.90 | 2.93 |
202 | 203 | 5.654650 | ACAGTGTACTTCCAATTTTGTTGGA | 59.345 | 36.000 | 5.45 | 5.45 | 46.08 | 3.53 |
203 | 204 | 5.901552 | ACAGTGTACTTCCAATTTTGTTGG | 58.098 | 37.500 | 0.00 | 0.38 | 40.87 | 3.77 |
204 | 205 | 7.543868 | TGAAACAGTGTACTTCCAATTTTGTTG | 59.456 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
205 | 206 | 7.607250 | TGAAACAGTGTACTTCCAATTTTGTT | 58.393 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
206 | 207 | 7.164230 | TGAAACAGTGTACTTCCAATTTTGT | 57.836 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
207 | 208 | 7.222611 | CCTTGAAACAGTGTACTTCCAATTTTG | 59.777 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
208 | 209 | 7.123547 | TCCTTGAAACAGTGTACTTCCAATTTT | 59.876 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
209 | 210 | 6.605594 | TCCTTGAAACAGTGTACTTCCAATTT | 59.394 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
210 | 211 | 6.039382 | GTCCTTGAAACAGTGTACTTCCAATT | 59.961 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
211 | 212 | 5.531287 | GTCCTTGAAACAGTGTACTTCCAAT | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
212 | 213 | 4.879545 | GTCCTTGAAACAGTGTACTTCCAA | 59.120 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
213 | 214 | 4.448210 | GTCCTTGAAACAGTGTACTTCCA | 58.552 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
214 | 215 | 3.493503 | CGTCCTTGAAACAGTGTACTTCC | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
215 | 216 | 4.365723 | TCGTCCTTGAAACAGTGTACTTC | 58.634 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
216 | 217 | 4.395959 | TCGTCCTTGAAACAGTGTACTT | 57.604 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
217 | 218 | 4.369182 | CTTCGTCCTTGAAACAGTGTACT | 58.631 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
218 | 219 | 3.493503 | CCTTCGTCCTTGAAACAGTGTAC | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
219 | 220 | 3.493699 | CCCTTCGTCCTTGAAACAGTGTA | 60.494 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
220 | 221 | 2.561569 | CCTTCGTCCTTGAAACAGTGT | 58.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
221 | 222 | 1.873591 | CCCTTCGTCCTTGAAACAGTG | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
222 | 223 | 1.766496 | TCCCTTCGTCCTTGAAACAGT | 59.234 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
223 | 224 | 2.224305 | ACTCCCTTCGTCCTTGAAACAG | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
224 | 225 | 1.766496 | ACTCCCTTCGTCCTTGAAACA | 59.234 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
225 | 226 | 2.545537 | ACTCCCTTCGTCCTTGAAAC | 57.454 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
226 | 227 | 2.028385 | GCTACTCCCTTCGTCCTTGAAA | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
227 | 228 | 1.549170 | GCTACTCCCTTCGTCCTTGAA | 59.451 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
228 | 229 | 1.183549 | GCTACTCCCTTCGTCCTTGA | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
229 | 230 | 0.175989 | GGCTACTCCCTTCGTCCTTG | 59.824 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
230 | 231 | 0.041386 | AGGCTACTCCCTTCGTCCTT | 59.959 | 55.000 | 0.00 | 0.00 | 34.51 | 3.36 |
231 | 232 | 0.924823 | TAGGCTACTCCCTTCGTCCT | 59.075 | 55.000 | 0.00 | 0.00 | 36.41 | 3.85 |
232 | 233 | 1.031235 | GTAGGCTACTCCCTTCGTCC | 58.969 | 60.000 | 17.35 | 0.00 | 36.41 | 4.79 |
233 | 234 | 2.055684 | AGTAGGCTACTCCCTTCGTC | 57.944 | 55.000 | 21.30 | 0.00 | 36.41 | 4.20 |
234 | 235 | 2.100989 | CAAGTAGGCTACTCCCTTCGT | 58.899 | 52.381 | 26.39 | 7.28 | 38.26 | 3.85 |
235 | 236 | 2.376109 | TCAAGTAGGCTACTCCCTTCG | 58.624 | 52.381 | 26.39 | 11.51 | 38.26 | 3.79 |
236 | 237 | 3.431068 | GCTTCAAGTAGGCTACTCCCTTC | 60.431 | 52.174 | 26.39 | 12.70 | 38.26 | 3.46 |
237 | 238 | 2.502130 | GCTTCAAGTAGGCTACTCCCTT | 59.498 | 50.000 | 26.39 | 9.15 | 38.26 | 3.95 |
238 | 239 | 2.112190 | GCTTCAAGTAGGCTACTCCCT | 58.888 | 52.381 | 26.39 | 9.53 | 38.26 | 4.20 |
239 | 240 | 1.139256 | GGCTTCAAGTAGGCTACTCCC | 59.861 | 57.143 | 26.39 | 16.94 | 38.26 | 4.30 |
240 | 241 | 1.831736 | TGGCTTCAAGTAGGCTACTCC | 59.168 | 52.381 | 26.39 | 21.61 | 41.03 | 3.85 |
241 | 242 | 2.159028 | CCTGGCTTCAAGTAGGCTACTC | 60.159 | 54.545 | 26.39 | 13.79 | 41.03 | 2.59 |
242 | 243 | 1.834263 | CCTGGCTTCAAGTAGGCTACT | 59.166 | 52.381 | 21.30 | 21.30 | 41.03 | 2.57 |
243 | 244 | 1.831736 | TCCTGGCTTCAAGTAGGCTAC | 59.168 | 52.381 | 16.93 | 16.93 | 41.03 | 3.58 |
244 | 245 | 1.831736 | GTCCTGGCTTCAAGTAGGCTA | 59.168 | 52.381 | 5.27 | 0.00 | 41.03 | 3.93 |
245 | 246 | 0.615850 | GTCCTGGCTTCAAGTAGGCT | 59.384 | 55.000 | 5.27 | 0.00 | 41.03 | 4.58 |
246 | 247 | 0.324943 | TGTCCTGGCTTCAAGTAGGC | 59.675 | 55.000 | 5.27 | 0.00 | 40.84 | 3.93 |
247 | 248 | 3.274288 | GAATGTCCTGGCTTCAAGTAGG | 58.726 | 50.000 | 4.02 | 4.02 | 0.00 | 3.18 |
248 | 249 | 3.274288 | GGAATGTCCTGGCTTCAAGTAG | 58.726 | 50.000 | 0.00 | 0.00 | 32.53 | 2.57 |
249 | 250 | 2.642311 | TGGAATGTCCTGGCTTCAAGTA | 59.358 | 45.455 | 0.00 | 0.00 | 37.46 | 2.24 |
250 | 251 | 1.425066 | TGGAATGTCCTGGCTTCAAGT | 59.575 | 47.619 | 0.00 | 0.00 | 37.46 | 3.16 |
251 | 252 | 2.205022 | TGGAATGTCCTGGCTTCAAG | 57.795 | 50.000 | 0.00 | 0.00 | 37.46 | 3.02 |
252 | 253 | 2.517959 | CTTGGAATGTCCTGGCTTCAA | 58.482 | 47.619 | 0.00 | 0.00 | 37.46 | 2.69 |
253 | 254 | 1.887956 | GCTTGGAATGTCCTGGCTTCA | 60.888 | 52.381 | 0.00 | 0.00 | 37.46 | 3.02 |
254 | 255 | 0.813821 | GCTTGGAATGTCCTGGCTTC | 59.186 | 55.000 | 0.00 | 0.00 | 37.46 | 3.86 |
255 | 256 | 0.613012 | GGCTTGGAATGTCCTGGCTT | 60.613 | 55.000 | 10.25 | 0.00 | 37.46 | 4.35 |
256 | 257 | 1.000396 | GGCTTGGAATGTCCTGGCT | 60.000 | 57.895 | 10.25 | 0.00 | 37.46 | 4.75 |
257 | 258 | 1.304381 | TGGCTTGGAATGTCCTGGC | 60.304 | 57.895 | 0.00 | 2.33 | 37.46 | 4.85 |
258 | 259 | 0.038744 | ACTGGCTTGGAATGTCCTGG | 59.961 | 55.000 | 0.00 | 0.00 | 37.46 | 4.45 |
259 | 260 | 1.171308 | CACTGGCTTGGAATGTCCTG | 58.829 | 55.000 | 0.00 | 0.00 | 37.46 | 3.86 |
260 | 261 | 0.038744 | CCACTGGCTTGGAATGTCCT | 59.961 | 55.000 | 0.00 | 0.00 | 39.24 | 3.85 |
261 | 262 | 0.967380 | CCCACTGGCTTGGAATGTCC | 60.967 | 60.000 | 7.24 | 0.00 | 39.24 | 4.02 |
262 | 263 | 2.571548 | CCCACTGGCTTGGAATGTC | 58.428 | 57.895 | 7.24 | 0.00 | 39.24 | 3.06 |
263 | 264 | 4.850193 | CCCACTGGCTTGGAATGT | 57.150 | 55.556 | 7.24 | 0.00 | 39.24 | 2.71 |
273 | 274 | 1.679977 | CCAAGGTGATGCCCACTGG | 60.680 | 63.158 | 6.34 | 3.98 | 45.03 | 4.00 |
274 | 275 | 0.540365 | AACCAAGGTGATGCCCACTG | 60.540 | 55.000 | 6.34 | 0.00 | 45.03 | 3.66 |
275 | 276 | 0.540365 | CAACCAAGGTGATGCCCACT | 60.540 | 55.000 | 6.34 | 0.00 | 45.03 | 4.00 |
276 | 277 | 1.535204 | CCAACCAAGGTGATGCCCAC | 61.535 | 60.000 | 0.00 | 0.00 | 44.95 | 4.61 |
277 | 278 | 1.228831 | CCAACCAAGGTGATGCCCA | 60.229 | 57.895 | 0.00 | 0.00 | 38.26 | 5.36 |
278 | 279 | 2.649129 | GCCAACCAAGGTGATGCCC | 61.649 | 63.158 | 0.00 | 0.00 | 38.26 | 5.36 |
279 | 280 | 2.649129 | GGCCAACCAAGGTGATGCC | 61.649 | 63.158 | 0.00 | 10.08 | 35.26 | 4.40 |
280 | 281 | 2.973082 | GGCCAACCAAGGTGATGC | 59.027 | 61.111 | 0.00 | 0.00 | 35.26 | 3.91 |
281 | 282 | 0.322098 | TACGGCCAACCAAGGTGATG | 60.322 | 55.000 | 2.24 | 0.00 | 34.57 | 3.07 |
282 | 283 | 0.623723 | ATACGGCCAACCAAGGTGAT | 59.376 | 50.000 | 2.24 | 0.00 | 34.57 | 3.06 |
315 | 316 | 0.486879 | TTTGGGCCCATTTCTGTCCT | 59.513 | 50.000 | 29.23 | 0.00 | 0.00 | 3.85 |
320 | 321 | 0.486879 | TCCTGTTTGGGCCCATTTCT | 59.513 | 50.000 | 29.23 | 0.00 | 36.20 | 2.52 |
324 | 325 | 0.615544 | CACATCCTGTTTGGGCCCAT | 60.616 | 55.000 | 29.23 | 5.39 | 36.20 | 4.00 |
325 | 326 | 1.228831 | CACATCCTGTTTGGGCCCA | 60.229 | 57.895 | 24.45 | 24.45 | 36.20 | 5.36 |
334 | 335 | 1.210204 | ACCTGGATGCCACATCCTGT | 61.210 | 55.000 | 23.33 | 17.92 | 38.95 | 4.00 |
340 | 341 | 3.578286 | TGCCACCTGGATGCCACA | 61.578 | 61.111 | 0.00 | 0.00 | 37.39 | 4.17 |
361 | 362 | 1.278127 | GTACTAAGCCTCAGCCACCAA | 59.722 | 52.381 | 0.00 | 0.00 | 41.25 | 3.67 |
363 | 364 | 0.902531 | TGTACTAAGCCTCAGCCACC | 59.097 | 55.000 | 0.00 | 0.00 | 41.25 | 4.61 |
369 | 370 | 3.954904 | GAGTCTGGATGTACTAAGCCTCA | 59.045 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
374 | 375 | 4.023980 | TGGTGGAGTCTGGATGTACTAAG | 58.976 | 47.826 | 0.00 | 0.00 | 0.00 | 2.18 |
383 | 384 | 0.757561 | TCGTTGTGGTGGAGTCTGGA | 60.758 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
384 | 385 | 0.600255 | GTCGTTGTGGTGGAGTCTGG | 60.600 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
385 | 386 | 0.104120 | TGTCGTTGTGGTGGAGTCTG | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
386 | 387 | 1.048601 | ATGTCGTTGTGGTGGAGTCT | 58.951 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
387 | 388 | 1.148310 | CATGTCGTTGTGGTGGAGTC | 58.852 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
388 | 389 | 0.884704 | GCATGTCGTTGTGGTGGAGT | 60.885 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
389 | 390 | 0.603707 | AGCATGTCGTTGTGGTGGAG | 60.604 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
390 | 391 | 0.682292 | TAGCATGTCGTTGTGGTGGA | 59.318 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
391 | 392 | 1.464608 | CTTAGCATGTCGTTGTGGTGG | 59.535 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
392 | 393 | 2.412870 | TCTTAGCATGTCGTTGTGGTG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
393 | 394 | 2.831685 | TCTTAGCATGTCGTTGTGGT | 57.168 | 45.000 | 0.00 | 0.00 | 0.00 | 4.16 |
398 | 399 | 3.806521 | GCATCTCATCTTAGCATGTCGTT | 59.193 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
399 | 400 | 3.181472 | TGCATCTCATCTTAGCATGTCGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
415 | 416 | 6.785337 | TGATTGATCTTTTTCCATGCATCT | 57.215 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
416 | 417 | 7.201582 | GGTTTGATTGATCTTTTTCCATGCATC | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
417 | 418 | 6.596497 | GGTTTGATTGATCTTTTTCCATGCAT | 59.404 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
418 | 419 | 5.933463 | GGTTTGATTGATCTTTTTCCATGCA | 59.067 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
419 | 420 | 5.933463 | TGGTTTGATTGATCTTTTTCCATGC | 59.067 | 36.000 | 0.00 | 0.00 | 0.00 | 4.06 |
429 | 430 | 6.636705 | CATGGTTGAATGGTTTGATTGATCT | 58.363 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
430 | 431 | 5.292589 | GCATGGTTGAATGGTTTGATTGATC | 59.707 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
431 | 432 | 5.180271 | GCATGGTTGAATGGTTTGATTGAT | 58.820 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
432 | 433 | 4.040095 | TGCATGGTTGAATGGTTTGATTGA | 59.960 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
433 | 434 | 4.316645 | TGCATGGTTGAATGGTTTGATTG | 58.683 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
448 | 449 | 6.434028 | AGTGTAATAGTTTTGACATGCATGGT | 59.566 | 34.615 | 29.41 | 15.59 | 0.00 | 3.55 |
465 | 466 | 4.458397 | CAGACGGAGGGAGTAGTGTAATA | 58.542 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
475 | 476 | 2.362717 | GAGTATTTCCAGACGGAGGGAG | 59.637 | 54.545 | 0.00 | 0.00 | 44.10 | 4.30 |
476 | 477 | 2.385803 | GAGTATTTCCAGACGGAGGGA | 58.614 | 52.381 | 0.00 | 0.00 | 44.10 | 4.20 |
477 | 478 | 1.067212 | CGAGTATTTCCAGACGGAGGG | 59.933 | 57.143 | 0.00 | 0.00 | 44.10 | 4.30 |
479 | 480 | 2.422479 | TGACGAGTATTTCCAGACGGAG | 59.578 | 50.000 | 0.00 | 0.00 | 44.10 | 4.63 |
485 | 497 | 6.371548 | TCCATTTCTTTGACGAGTATTTCCAG | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
487 | 499 | 6.737254 | TCCATTTCTTTGACGAGTATTTCC | 57.263 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
489 | 501 | 7.687941 | ACATCCATTTCTTTGACGAGTATTT | 57.312 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
492 | 504 | 7.327975 | ACATACATCCATTTCTTTGACGAGTA | 58.672 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
493 | 505 | 6.173339 | ACATACATCCATTTCTTTGACGAGT | 58.827 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
497 | 509 | 8.492673 | TGTCTACATACATCCATTTCTTTGAC | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
498 | 510 | 9.112725 | CATGTCTACATACATCCATTTCTTTGA | 57.887 | 33.333 | 0.00 | 0.00 | 38.01 | 2.69 |
499 | 511 | 8.896744 | ACATGTCTACATACATCCATTTCTTTG | 58.103 | 33.333 | 0.00 | 0.00 | 38.01 | 2.77 |
502 | 514 | 9.466497 | AAAACATGTCTACATACATCCATTTCT | 57.534 | 29.630 | 0.00 | 0.00 | 38.01 | 2.52 |
506 | 518 | 9.905713 | AACTAAAACATGTCTACATACATCCAT | 57.094 | 29.630 | 0.00 | 0.00 | 38.01 | 3.41 |
535 | 547 | 9.618890 | CCGATATGGATAAAAATGGATGTATCT | 57.381 | 33.333 | 0.00 | 0.00 | 42.00 | 1.98 |
536 | 548 | 8.345565 | GCCGATATGGATAAAAATGGATGTATC | 58.654 | 37.037 | 0.00 | 0.00 | 42.00 | 2.24 |
537 | 549 | 7.012327 | CGCCGATATGGATAAAAATGGATGTAT | 59.988 | 37.037 | 0.00 | 0.00 | 42.00 | 2.29 |
538 | 550 | 6.315144 | CGCCGATATGGATAAAAATGGATGTA | 59.685 | 38.462 | 0.00 | 0.00 | 42.00 | 2.29 |
540 | 552 | 5.353956 | TCGCCGATATGGATAAAAATGGATG | 59.646 | 40.000 | 0.00 | 0.00 | 42.00 | 3.51 |
541 | 553 | 5.354234 | GTCGCCGATATGGATAAAAATGGAT | 59.646 | 40.000 | 0.00 | 0.00 | 42.00 | 3.41 |
542 | 554 | 4.693566 | GTCGCCGATATGGATAAAAATGGA | 59.306 | 41.667 | 0.00 | 0.00 | 42.00 | 3.41 |
543 | 555 | 4.454161 | TGTCGCCGATATGGATAAAAATGG | 59.546 | 41.667 | 0.00 | 0.00 | 42.00 | 3.16 |
544 | 556 | 5.605564 | TGTCGCCGATATGGATAAAAATG | 57.394 | 39.130 | 0.00 | 0.00 | 42.00 | 2.32 |
545 | 557 | 5.763204 | ACTTGTCGCCGATATGGATAAAAAT | 59.237 | 36.000 | 0.00 | 0.00 | 42.00 | 1.82 |
546 | 558 | 5.120399 | ACTTGTCGCCGATATGGATAAAAA | 58.880 | 37.500 | 0.00 | 0.00 | 42.00 | 1.94 |
548 | 560 | 4.330944 | ACTTGTCGCCGATATGGATAAA | 57.669 | 40.909 | 0.00 | 0.00 | 42.00 | 1.40 |
549 | 561 | 5.456548 | TTACTTGTCGCCGATATGGATAA | 57.543 | 39.130 | 0.00 | 0.00 | 42.00 | 1.75 |
550 | 562 | 5.654603 | ATTACTTGTCGCCGATATGGATA | 57.345 | 39.130 | 0.00 | 0.00 | 42.00 | 2.59 |
551 | 563 | 4.537135 | ATTACTTGTCGCCGATATGGAT | 57.463 | 40.909 | 0.00 | 0.00 | 42.00 | 3.41 |
552 | 564 | 4.304110 | GAATTACTTGTCGCCGATATGGA | 58.696 | 43.478 | 0.00 | 0.00 | 42.00 | 3.41 |
554 | 566 | 3.121279 | CGGAATTACTTGTCGCCGATATG | 59.879 | 47.826 | 0.00 | 0.00 | 41.11 | 1.78 |
556 | 568 | 2.544277 | CCGGAATTACTTGTCGCCGATA | 60.544 | 50.000 | 0.00 | 0.00 | 41.11 | 2.92 |
557 | 569 | 1.567504 | CGGAATTACTTGTCGCCGAT | 58.432 | 50.000 | 0.00 | 0.00 | 41.11 | 4.18 |
561 | 573 | 0.643820 | CGTCCGGAATTACTTGTCGC | 59.356 | 55.000 | 5.23 | 0.00 | 0.00 | 5.19 |
563 | 575 | 2.537401 | CTCCGTCCGGAATTACTTGTC | 58.463 | 52.381 | 5.23 | 0.00 | 44.66 | 3.18 |
564 | 576 | 1.206371 | CCTCCGTCCGGAATTACTTGT | 59.794 | 52.381 | 5.23 | 0.00 | 44.66 | 3.16 |
565 | 577 | 1.472728 | CCCTCCGTCCGGAATTACTTG | 60.473 | 57.143 | 5.23 | 0.00 | 44.66 | 3.16 |
566 | 578 | 0.828677 | CCCTCCGTCCGGAATTACTT | 59.171 | 55.000 | 5.23 | 0.00 | 44.66 | 2.24 |
567 | 579 | 0.032813 | TCCCTCCGTCCGGAATTACT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.24 |
569 | 581 | 0.032813 | ACTCCCTCCGTCCGGAATTA | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 1.40 |
570 | 582 | 0.032813 | TACTCCCTCCGTCCGGAATT | 60.033 | 55.000 | 5.23 | 0.00 | 44.66 | 2.17 |
571 | 583 | 0.754587 | GTACTCCCTCCGTCCGGAAT | 60.755 | 60.000 | 5.23 | 0.00 | 44.66 | 3.01 |
572 | 584 | 1.379044 | GTACTCCCTCCGTCCGGAA | 60.379 | 63.158 | 5.23 | 0.00 | 44.66 | 4.30 |
574 | 586 | 1.379576 | AAGTACTCCCTCCGTCCGG | 60.380 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
576 | 588 | 2.134789 | TACAAGTACTCCCTCCGTCC | 57.865 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
577 | 589 | 3.067883 | GGAATACAAGTACTCCCTCCGTC | 59.932 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
578 | 590 | 3.029570 | GGAATACAAGTACTCCCTCCGT | 58.970 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
579 | 591 | 3.028850 | TGGAATACAAGTACTCCCTCCG | 58.971 | 50.000 | 5.38 | 0.00 | 30.83 | 4.63 |
580 | 592 | 3.773119 | TGTGGAATACAAGTACTCCCTCC | 59.227 | 47.826 | 5.38 | 0.00 | 36.06 | 4.30 |
581 | 593 | 5.416271 | TTGTGGAATACAAGTACTCCCTC | 57.584 | 43.478 | 5.38 | 0.58 | 44.07 | 4.30 |
662 | 1606 | 6.073873 | CGCATGTTGTTGTGGAAATTATTTGT | 60.074 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
676 | 1620 | 3.873361 | AGATGATACTCCGCATGTTGTTG | 59.127 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
677 | 1621 | 4.142609 | AGATGATACTCCGCATGTTGTT | 57.857 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
683 | 1627 | 3.821600 | ACGAACTAGATGATACTCCGCAT | 59.178 | 43.478 | 0.00 | 0.00 | 0.00 | 4.73 |
686 | 1630 | 7.861372 | ACATAAAACGAACTAGATGATACTCCG | 59.139 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
705 | 1649 | 5.721876 | AGACAACAAACGACGACATAAAA | 57.278 | 34.783 | 0.00 | 0.00 | 0.00 | 1.52 |
729 | 1673 | 4.074970 | ACCTCAATGTGAATCTCAACACC | 58.925 | 43.478 | 0.00 | 0.00 | 36.35 | 4.16 |
782 | 1727 | 9.823647 | AGGATGTCTTAGATGTACTTATGTTTG | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
785 | 1730 | 7.785028 | TCCAGGATGTCTTAGATGTACTTATGT | 59.215 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
789 | 1734 | 7.496346 | TTTCCAGGATGTCTTAGATGTACTT | 57.504 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
815 | 1760 | 8.766151 | GTTATAGATACTTTGAGTTGGCTTAGC | 58.234 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
909 | 1930 | 2.554032 | CTCAAAATTGAGCGGGTTGAGT | 59.446 | 45.455 | 10.00 | 0.00 | 46.97 | 3.41 |
917 | 1938 | 4.916943 | AAGGCACTCCTCAAAATTGAGCG | 61.917 | 47.826 | 16.02 | 11.70 | 46.38 | 5.03 |
974 | 1995 | 0.912486 | GGGCTGAGGGTCAATGTAGT | 59.088 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
980 | 2001 | 1.685224 | GACATGGGCTGAGGGTCAA | 59.315 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
989 | 2010 | 1.215423 | GAATGGTTAGGGACATGGGCT | 59.785 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
1021 | 2042 | 1.002087 | AGAGGAAATGAAACTCGCGGT | 59.998 | 47.619 | 6.13 | 0.00 | 0.00 | 5.68 |
1026 | 2047 | 3.855858 | AGCTCGAGAGGAAATGAAACTC | 58.144 | 45.455 | 18.75 | 0.00 | 0.00 | 3.01 |
1028 | 2049 | 3.616379 | CAGAGCTCGAGAGGAAATGAAAC | 59.384 | 47.826 | 18.75 | 0.00 | 0.00 | 2.78 |
1029 | 2050 | 3.368843 | CCAGAGCTCGAGAGGAAATGAAA | 60.369 | 47.826 | 18.75 | 0.00 | 0.00 | 2.69 |
1032 | 2053 | 1.480137 | ACCAGAGCTCGAGAGGAAATG | 59.520 | 52.381 | 18.75 | 5.15 | 0.00 | 2.32 |
1033 | 2054 | 1.480137 | CACCAGAGCTCGAGAGGAAAT | 59.520 | 52.381 | 18.75 | 0.00 | 0.00 | 2.17 |
1034 | 2055 | 0.891373 | CACCAGAGCTCGAGAGGAAA | 59.109 | 55.000 | 18.75 | 0.00 | 0.00 | 3.13 |
1035 | 2056 | 0.967887 | CCACCAGAGCTCGAGAGGAA | 60.968 | 60.000 | 18.75 | 0.00 | 0.00 | 3.36 |
1056 | 2078 | 2.808315 | CGGCTAGAGGTCGCACAT | 59.192 | 61.111 | 0.00 | 0.00 | 35.85 | 3.21 |
1092 | 2114 | 1.067915 | ACATTTTGGCCGTTTCGATGG | 60.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1094 | 2116 | 3.378911 | AAACATTTTGGCCGTTTCGAT | 57.621 | 38.095 | 0.00 | 0.00 | 0.00 | 3.59 |
1095 | 2117 | 2.873133 | AAACATTTTGGCCGTTTCGA | 57.127 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1096 | 2118 | 3.935027 | AAAAACATTTTGGCCGTTTCG | 57.065 | 38.095 | 6.22 | 0.00 | 31.86 | 3.46 |
1178 | 2216 | 9.848710 | GCCTACTATCCTAAATTTTTAACTCCT | 57.151 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
1211 | 2534 | 8.246871 | CCTCACTATTTCTTTTTCCCTTTCATC | 58.753 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
1216 | 2539 | 5.393866 | TGCCTCACTATTTCTTTTTCCCTT | 58.606 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
1240 | 2864 | 3.955650 | AGCTTCTTTTGTCGGCTAGTA | 57.044 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
1262 | 2886 | 3.265070 | CAGACTTTGCTCTTTGTCTGC | 57.735 | 47.619 | 8.68 | 0.00 | 46.09 | 4.26 |
1311 | 2950 | 9.467258 | GGGACAACCTTTACTTTTTGTTTATAC | 57.533 | 33.333 | 0.00 | 0.00 | 32.34 | 1.47 |
1343 | 2991 | 5.378332 | TCTACTAGAGATACAAGAGGGCAC | 58.622 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
1360 | 3008 | 9.868160 | TGAGTTGATGGATCTAGAATTCTACTA | 57.132 | 33.333 | 11.24 | 3.41 | 0.00 | 1.82 |
1361 | 3009 | 8.774546 | TGAGTTGATGGATCTAGAATTCTACT | 57.225 | 34.615 | 11.24 | 5.57 | 0.00 | 2.57 |
1362 | 3010 | 9.474920 | CTTGAGTTGATGGATCTAGAATTCTAC | 57.525 | 37.037 | 11.24 | 2.75 | 0.00 | 2.59 |
1363 | 3011 | 9.206690 | ACTTGAGTTGATGGATCTAGAATTCTA | 57.793 | 33.333 | 14.42 | 14.42 | 0.00 | 2.10 |
1364 | 3012 | 8.088463 | ACTTGAGTTGATGGATCTAGAATTCT | 57.912 | 34.615 | 13.56 | 13.56 | 0.00 | 2.40 |
1365 | 3013 | 9.474920 | CTACTTGAGTTGATGGATCTAGAATTC | 57.525 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1366 | 3014 | 7.930865 | GCTACTTGAGTTGATGGATCTAGAATT | 59.069 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1367 | 3015 | 7.441017 | GCTACTTGAGTTGATGGATCTAGAAT | 58.559 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
1368 | 3016 | 6.460261 | CGCTACTTGAGTTGATGGATCTAGAA | 60.460 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
1386 | 3034 | 0.462759 | GGCTGGATCAAGCGCTACTT | 60.463 | 55.000 | 12.05 | 0.00 | 44.52 | 2.24 |
1388 | 3036 | 2.240500 | CGGCTGGATCAAGCGCTAC | 61.241 | 63.158 | 12.05 | 2.51 | 44.52 | 3.58 |
1390 | 3038 | 3.729965 | CTCGGCTGGATCAAGCGCT | 62.730 | 63.158 | 16.01 | 2.64 | 44.52 | 5.92 |
1405 | 3060 | 2.109517 | CTCCATGGATCCCCTGCTCG | 62.110 | 65.000 | 16.63 | 0.00 | 0.00 | 5.03 |
1433 | 3100 | 3.691744 | CTCCAGCTCGCACTCGTCC | 62.692 | 68.421 | 0.00 | 0.00 | 36.96 | 4.79 |
1461 | 3128 | 1.469308 | CTCGAGGTCTACAGTGGACAC | 59.531 | 57.143 | 18.02 | 10.47 | 35.61 | 3.67 |
1464 | 3131 | 0.680280 | GCCTCGAGGTCTACAGTGGA | 60.680 | 60.000 | 31.43 | 0.00 | 37.57 | 4.02 |
1643 | 3310 | 1.741770 | CGTGCCACAGAAGTAGCCC | 60.742 | 63.158 | 0.00 | 0.00 | 30.87 | 5.19 |
1679 | 3346 | 1.166531 | AGTTGAGCTGTTTGACGGGC | 61.167 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1744 | 3414 | 2.421424 | GCACCATCTGGACAAGAATGAC | 59.579 | 50.000 | 2.55 | 0.00 | 38.79 | 3.06 |
1753 | 3423 | 1.448540 | CCGTCAGCACCATCTGGAC | 60.449 | 63.158 | 2.55 | 0.00 | 38.94 | 4.02 |
1928 | 3598 | 4.802051 | GCCCGGAAGATGCTGCCA | 62.802 | 66.667 | 0.73 | 0.00 | 0.00 | 4.92 |
2057 | 3733 | 1.074727 | CACCACCTACCACCATGGAAA | 59.925 | 52.381 | 21.47 | 0.00 | 40.96 | 3.13 |
2061 | 3737 | 2.286365 | AAACACCACCTACCACCATG | 57.714 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2076 | 3752 | 1.524165 | CCACCGGACGGACAAAACA | 60.524 | 57.895 | 18.80 | 0.00 | 38.96 | 2.83 |
2077 | 3753 | 1.226030 | CTCCACCGGACGGACAAAAC | 61.226 | 60.000 | 18.80 | 0.00 | 38.96 | 2.43 |
2079 | 3755 | 2.738480 | CTCCACCGGACGGACAAA | 59.262 | 61.111 | 18.80 | 0.00 | 38.96 | 2.83 |
2080 | 3756 | 3.307906 | CCTCCACCGGACGGACAA | 61.308 | 66.667 | 18.80 | 0.87 | 38.96 | 3.18 |
2184 | 3861 | 2.603473 | TGTCCACCTCCGTCCAGG | 60.603 | 66.667 | 0.00 | 0.00 | 42.97 | 4.45 |
2282 | 3959 | 1.066358 | GTAGCTGAACCCCCTGTACAC | 60.066 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
2292 | 3969 | 1.672145 | GGAACTCACGGTAGCTGAACC | 60.672 | 57.143 | 0.00 | 0.00 | 36.08 | 3.62 |
2384 | 4064 | 6.930667 | AAAAATGAATGCTTATGATTGGGC | 57.069 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
2404 | 4084 | 9.927668 | ACAAAATGACAAGAAGAAGAAGAAAAA | 57.072 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
2407 | 4087 | 9.396022 | AGTACAAAATGACAAGAAGAAGAAGAA | 57.604 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2408 | 4088 | 8.964476 | AGTACAAAATGACAAGAAGAAGAAGA | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
2409 | 4089 | 8.286097 | GGAGTACAAAATGACAAGAAGAAGAAG | 58.714 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
2410 | 4090 | 7.993183 | AGGAGTACAAAATGACAAGAAGAAGAA | 59.007 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2411 | 4091 | 7.509546 | AGGAGTACAAAATGACAAGAAGAAGA | 58.490 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
2412 | 4092 | 7.736447 | AGGAGTACAAAATGACAAGAAGAAG | 57.264 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2420 | 4100 | 9.733556 | ACAAACATATAGGAGTACAAAATGACA | 57.266 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
2424 | 4104 | 9.042008 | CGCTACAAACATATAGGAGTACAAAAT | 57.958 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2425 | 4105 | 7.493320 | CCGCTACAAACATATAGGAGTACAAAA | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
2426 | 4106 | 6.982141 | CCGCTACAAACATATAGGAGTACAAA | 59.018 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
2427 | 4107 | 6.461927 | CCCGCTACAAACATATAGGAGTACAA | 60.462 | 42.308 | 0.00 | 0.00 | 0.00 | 2.41 |
2428 | 4108 | 5.010314 | CCCGCTACAAACATATAGGAGTACA | 59.990 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2429 | 4109 | 5.467705 | CCCGCTACAAACATATAGGAGTAC | 58.532 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
2430 | 4110 | 4.021719 | GCCCGCTACAAACATATAGGAGTA | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
2431 | 4111 | 3.244112 | GCCCGCTACAAACATATAGGAGT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
2432 | 4112 | 3.326747 | GCCCGCTACAAACATATAGGAG | 58.673 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2433 | 4113 | 2.038033 | GGCCCGCTACAAACATATAGGA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2434 | 4114 | 2.423577 | GGCCCGCTACAAACATATAGG | 58.576 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
2435 | 4115 | 2.066262 | CGGCCCGCTACAAACATATAG | 58.934 | 52.381 | 0.00 | 0.00 | 0.00 | 1.31 |
2436 | 4116 | 1.687660 | TCGGCCCGCTACAAACATATA | 59.312 | 47.619 | 0.00 | 0.00 | 0.00 | 0.86 |
2437 | 4117 | 0.466543 | TCGGCCCGCTACAAACATAT | 59.533 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2438 | 4118 | 0.179094 | CTCGGCCCGCTACAAACATA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2439 | 4119 | 1.449601 | CTCGGCCCGCTACAAACAT | 60.450 | 57.895 | 0.00 | 0.00 | 0.00 | 2.71 |
2440 | 4120 | 2.047655 | CTCGGCCCGCTACAAACA | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 2.83 |
2441 | 4121 | 0.952010 | TTTCTCGGCCCGCTACAAAC | 60.952 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2442 | 4122 | 0.250381 | TTTTCTCGGCCCGCTACAAA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2443 | 4123 | 0.952010 | GTTTTCTCGGCCCGCTACAA | 60.952 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2444 | 4124 | 1.375013 | GTTTTCTCGGCCCGCTACA | 60.375 | 57.895 | 0.00 | 0.00 | 0.00 | 2.74 |
2445 | 4125 | 0.672711 | AAGTTTTCTCGGCCCGCTAC | 60.673 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2446 | 4126 | 0.035739 | AAAGTTTTCTCGGCCCGCTA | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2447 | 4127 | 0.035739 | TAAAGTTTTCTCGGCCCGCT | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2448 | 4128 | 0.876399 | TTAAAGTTTTCTCGGCCCGC | 59.124 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2449 | 4129 | 2.096980 | GGATTAAAGTTTTCTCGGCCCG | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2450 | 4130 | 3.086282 | TGGATTAAAGTTTTCTCGGCCC | 58.914 | 45.455 | 0.00 | 0.00 | 0.00 | 5.80 |
2451 | 4131 | 4.776795 | TTGGATTAAAGTTTTCTCGGCC | 57.223 | 40.909 | 0.00 | 0.00 | 0.00 | 6.13 |
2452 | 4132 | 6.866248 | TGAATTTGGATTAAAGTTTTCTCGGC | 59.134 | 34.615 | 0.00 | 0.00 | 0.00 | 5.54 |
2453 | 4133 | 8.986477 | ATGAATTTGGATTAAAGTTTTCTCGG | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 4.63 |
2456 | 4136 | 9.002600 | GGCAATGAATTTGGATTAAAGTTTTCT | 57.997 | 29.630 | 0.00 | 0.00 | 35.75 | 2.52 |
2457 | 4137 | 8.782144 | TGGCAATGAATTTGGATTAAAGTTTTC | 58.218 | 29.630 | 0.00 | 0.00 | 35.75 | 2.29 |
2458 | 4138 | 8.688747 | TGGCAATGAATTTGGATTAAAGTTTT | 57.311 | 26.923 | 0.00 | 0.00 | 35.75 | 2.43 |
2459 | 4139 | 8.688747 | TTGGCAATGAATTTGGATTAAAGTTT | 57.311 | 26.923 | 0.00 | 0.00 | 35.75 | 2.66 |
2721 | 4401 | 4.631813 | CGGTTTCCCTTCTATCTTCACTTG | 59.368 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2990 | 4670 | 2.234300 | TTCCTCGACTGTTTGACACC | 57.766 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3290 | 4974 | 8.445361 | TCAACTCTAGGGATTTTACCTAAAGT | 57.555 | 34.615 | 0.00 | 0.00 | 42.27 | 2.66 |
3327 | 5011 | 4.120792 | TGCAACTTTCAATGCTTTGTGA | 57.879 | 36.364 | 11.67 | 0.61 | 42.97 | 3.58 |
3397 | 5081 | 5.333299 | TCTTAAAAGACGTATGGCTGCTA | 57.667 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.