Multiple sequence alignment - TraesCS3A01G537300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G537300 chr3A 100.000 3614 0 0 1 3614 749205489 749201876 0.000000e+00 6674.0
1 TraesCS3A01G537300 chr7A 98.440 1154 16 1 2461 3614 27671577 27670426 0.000000e+00 2030.0
2 TraesCS3A01G537300 chr7A 98.267 1154 18 1 2461 3614 27646929 27645778 0.000000e+00 2019.0
3 TraesCS3A01G537300 chr6A 98.095 1155 18 3 2460 3614 595589445 595590595 0.000000e+00 2008.0
4 TraesCS3A01G537300 chr2A 97.992 996 20 0 2461 3456 203582792 203583787 0.000000e+00 1729.0
5 TraesCS3A01G537300 chr2A 94.595 148 8 0 99 246 575349136 575349283 2.810000e-56 230.0
6 TraesCS3A01G537300 chr2A 93.960 149 9 0 99 247 600628292 600628440 3.630000e-55 226.0
7 TraesCS3A01G537300 chr2A 82.877 146 20 4 446 591 630168075 630168215 3.790000e-25 126.0
8 TraesCS3A01G537300 chr6D 95.349 1075 44 4 2543 3614 463444981 463443910 0.000000e+00 1703.0
9 TraesCS3A01G537300 chr5B 94.693 1074 53 3 2543 3614 155287848 155288919 0.000000e+00 1664.0
10 TraesCS3A01G537300 chr5B 93.220 118 8 0 474 591 596547664 596547781 1.330000e-39 174.0
11 TraesCS3A01G537300 chr7D 95.275 1037 46 2 2543 3576 10754553 10755589 0.000000e+00 1640.0
12 TraesCS3A01G537300 chr7D 94.118 153 9 0 99 251 176357346 176357498 2.170000e-57 233.0
13 TraesCS3A01G537300 chr7D 96.429 140 5 0 107 246 63379963 63379824 7.800000e-57 231.0
14 TraesCS3A01G537300 chr7D 92.308 156 11 1 91 246 134485879 134486033 1.690000e-53 220.0
15 TraesCS3A01G537300 chr7D 92.000 125 9 1 466 590 93126852 93126729 1.330000e-39 174.0
16 TraesCS3A01G537300 chr7D 93.043 115 8 0 476 590 430095732 430095846 6.210000e-38 169.0
17 TraesCS3A01G537300 chr7D 98.824 85 1 0 2461 2545 10754507 10754591 6.250000e-33 152.0
18 TraesCS3A01G537300 chr2D 95.174 1036 48 1 2543 3576 7472019 7470984 0.000000e+00 1635.0
19 TraesCS3A01G537300 chr2D 98.824 85 1 0 2461 2545 7472065 7471981 6.250000e-33 152.0
20 TraesCS3A01G537300 chr1B 94.206 1070 58 3 2543 3610 130552616 130551549 0.000000e+00 1629.0
21 TraesCS3A01G537300 chr1B 97.727 88 2 0 2461 2548 171011457 171011370 6.250000e-33 152.0
22 TraesCS3A01G537300 chr3D 92.619 989 64 6 1415 2395 613598922 613597935 0.000000e+00 1413.0
23 TraesCS3A01G537300 chr3D 91.489 235 17 3 614 846 613600280 613600047 1.620000e-83 320.0
24 TraesCS3A01G537300 chr3D 91.304 161 12 2 99 258 500140292 500140133 6.080000e-53 219.0
25 TraesCS3A01G537300 chr3D 83.854 192 18 8 284 475 613601539 613601361 1.730000e-38 171.0
26 TraesCS3A01G537300 chr3D 96.078 51 2 0 593 643 613600408 613600358 2.310000e-12 84.2
27 TraesCS3A01G537300 chr3D 89.655 58 6 0 895 952 613599948 613599891 1.390000e-09 75.0
28 TraesCS3A01G537300 chr3B 88.413 1191 110 20 1222 2395 822820535 822819356 0.000000e+00 1410.0
29 TraesCS3A01G537300 chr3B 87.732 269 29 4 895 1161 822821052 822820786 9.740000e-81 311.0
30 TraesCS3A01G537300 chr3B 83.108 296 27 9 2090 2384 823079618 823079891 7.750000e-62 248.0
31 TraesCS3A01G537300 chr3B 93.919 148 9 0 99 246 368322915 368323062 1.310000e-54 224.0
32 TraesCS3A01G537300 chr3B 94.186 86 5 0 688 773 822821268 822821183 8.140000e-27 132.0
33 TraesCS3A01G537300 chr3B 87.640 89 7 2 1734 1822 823079544 823079628 2.300000e-17 100.0
34 TraesCS3A01G537300 chr4D 95.302 149 7 0 99 247 309297343 309297195 1.680000e-58 237.0
35 TraesCS3A01G537300 chr4D 91.538 130 10 1 464 593 5923338 5923210 1.030000e-40 178.0
36 TraesCS3A01G537300 chr4D 98.824 85 1 0 2461 2545 213332809 213332893 6.250000e-33 152.0
37 TraesCS3A01G537300 chr7B 93.919 148 9 0 99 246 737071256 737071109 1.310000e-54 224.0
38 TraesCS3A01G537300 chr7B 96.581 117 4 0 474 590 679795611 679795727 1.020000e-45 195.0
39 TraesCS3A01G537300 chr7B 92.308 117 9 0 474 590 501600435 501600551 2.230000e-37 167.0
40 TraesCS3A01G537300 chr2B 95.000 120 6 0 473 592 710283397 710283516 4.760000e-44 189.0
41 TraesCS3A01G537300 chr6B 94.872 117 6 0 474 590 71316934 71316818 2.220000e-42 183.0
42 TraesCS3A01G537300 chr5D 89.552 134 12 2 472 605 450203288 450203157 6.210000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G537300 chr3A 749201876 749205489 3613 True 6674.000000 6674 100.000000 1 3614 1 chr3A.!!$R1 3613
1 TraesCS3A01G537300 chr7A 27670426 27671577 1151 True 2030.000000 2030 98.440000 2461 3614 1 chr7A.!!$R2 1153
2 TraesCS3A01G537300 chr7A 27645778 27646929 1151 True 2019.000000 2019 98.267000 2461 3614 1 chr7A.!!$R1 1153
3 TraesCS3A01G537300 chr6A 595589445 595590595 1150 False 2008.000000 2008 98.095000 2460 3614 1 chr6A.!!$F1 1154
4 TraesCS3A01G537300 chr2A 203582792 203583787 995 False 1729.000000 1729 97.992000 2461 3456 1 chr2A.!!$F1 995
5 TraesCS3A01G537300 chr6D 463443910 463444981 1071 True 1703.000000 1703 95.349000 2543 3614 1 chr6D.!!$R1 1071
6 TraesCS3A01G537300 chr5B 155287848 155288919 1071 False 1664.000000 1664 94.693000 2543 3614 1 chr5B.!!$F1 1071
7 TraesCS3A01G537300 chr7D 10754507 10755589 1082 False 896.000000 1640 97.049500 2461 3576 2 chr7D.!!$F4 1115
8 TraesCS3A01G537300 chr2D 7470984 7472065 1081 True 893.500000 1635 96.999000 2461 3576 2 chr2D.!!$R1 1115
9 TraesCS3A01G537300 chr1B 130551549 130552616 1067 True 1629.000000 1629 94.206000 2543 3610 1 chr1B.!!$R1 1067
10 TraesCS3A01G537300 chr3D 613597935 613601539 3604 True 412.640000 1413 90.739000 284 2395 5 chr3D.!!$R2 2111
11 TraesCS3A01G537300 chr3B 822819356 822821268 1912 True 617.666667 1410 90.110333 688 2395 3 chr3B.!!$R1 1707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 598 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.0 13.64 0.0 46.06 4.20 F
1753 3423 0.165944 GGCGACCGTTGTCATTCTTG 59.834 55.0 0.00 0.0 41.85 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2446 4126 0.035739 AAAGTTTTCTCGGCCCGCTA 59.964 50.0 0.0 0.0 0.0 4.26 R
2990 4670 2.234300 TTCCTCGACTGTTTGACACC 57.766 50.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.869206 ACTTAAGTACTGCCTATCTTTGGA 57.131 37.500 6.26 0.00 0.00 3.53
59 60 7.253905 ACTTAAGTACTGCCTATCTTTGGAA 57.746 36.000 6.26 0.00 0.00 3.53
60 61 7.686434 ACTTAAGTACTGCCTATCTTTGGAAA 58.314 34.615 6.26 0.00 0.00 3.13
61 62 7.824779 ACTTAAGTACTGCCTATCTTTGGAAAG 59.175 37.037 6.26 0.00 37.36 2.62
77 78 9.253832 TCTTTGGAAAGAAATTAATATGAGCCA 57.746 29.630 0.00 0.00 41.75 4.75
80 81 9.425248 TTGGAAAGAAATTAATATGAGCCATCT 57.575 29.630 0.00 0.00 0.00 2.90
96 97 8.206126 TGAGCCATCTATAGAATATTTGGTGA 57.794 34.615 16.94 3.39 0.00 4.02
97 98 8.659527 TGAGCCATCTATAGAATATTTGGTGAA 58.340 33.333 16.94 4.44 0.00 3.18
98 99 9.507329 GAGCCATCTATAGAATATTTGGTGAAA 57.493 33.333 16.94 0.00 0.00 2.69
146 147 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
147 148 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
148 149 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
149 150 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
150 151 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
153 154 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
154 155 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
155 156 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
156 157 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
157 158 9.467258 CTACTAATTTGATGGCATAAATGTTGG 57.533 33.333 0.00 2.80 0.00 3.77
158 159 7.850193 ACTAATTTGATGGCATAAATGTTGGT 58.150 30.769 0.00 3.42 0.00 3.67
159 160 7.981225 ACTAATTTGATGGCATAAATGTTGGTC 59.019 33.333 0.00 0.00 0.00 4.02
160 161 5.999205 TTTGATGGCATAAATGTTGGTCT 57.001 34.783 0.00 0.00 0.00 3.85
161 162 7.658525 ATTTGATGGCATAAATGTTGGTCTA 57.341 32.000 0.00 0.00 0.00 2.59
162 163 7.658525 TTTGATGGCATAAATGTTGGTCTAT 57.341 32.000 0.00 0.00 0.00 1.98
163 164 7.658525 TTGATGGCATAAATGTTGGTCTATT 57.341 32.000 0.00 0.00 0.00 1.73
164 165 8.759481 TTGATGGCATAAATGTTGGTCTATTA 57.241 30.769 0.00 0.00 0.00 0.98
165 166 8.938801 TGATGGCATAAATGTTGGTCTATTAT 57.061 30.769 0.00 0.00 0.00 1.28
166 167 9.365906 TGATGGCATAAATGTTGGTCTATTATT 57.634 29.630 0.00 0.00 0.00 1.40
167 168 9.630098 GATGGCATAAATGTTGGTCTATTATTG 57.370 33.333 0.00 0.00 0.00 1.90
168 169 8.532186 TGGCATAAATGTTGGTCTATTATTGT 57.468 30.769 0.00 0.00 0.00 2.71
169 170 8.412456 TGGCATAAATGTTGGTCTATTATTGTG 58.588 33.333 0.00 0.00 0.00 3.33
170 171 8.413229 GGCATAAATGTTGGTCTATTATTGTGT 58.587 33.333 0.00 0.00 0.00 3.72
176 177 9.801873 AATGTTGGTCTATTATTGTGTAAATGC 57.198 29.630 0.00 0.00 0.00 3.56
177 178 7.468441 TGTTGGTCTATTATTGTGTAAATGCG 58.532 34.615 0.00 0.00 0.00 4.73
178 179 7.334671 TGTTGGTCTATTATTGTGTAAATGCGA 59.665 33.333 0.00 0.00 0.00 5.10
179 180 8.342634 GTTGGTCTATTATTGTGTAAATGCGAT 58.657 33.333 0.00 0.00 0.00 4.58
180 181 8.083462 TGGTCTATTATTGTGTAAATGCGATC 57.917 34.615 0.00 0.00 0.00 3.69
181 182 7.713073 TGGTCTATTATTGTGTAAATGCGATCA 59.287 33.333 0.00 0.00 0.00 2.92
182 183 8.556194 GGTCTATTATTGTGTAAATGCGATCAA 58.444 33.333 0.00 0.00 0.00 2.57
183 184 9.929722 GTCTATTATTGTGTAAATGCGATCAAA 57.070 29.630 0.00 0.00 0.00 2.69
184 185 9.929722 TCTATTATTGTGTAAATGCGATCAAAC 57.070 29.630 0.00 0.00 0.00 2.93
185 186 9.715123 CTATTATTGTGTAAATGCGATCAAACA 57.285 29.630 0.00 0.00 0.00 2.83
189 190 8.978564 ATTGTGTAAATGCGATCAAACATAAA 57.021 26.923 0.00 0.00 0.00 1.40
190 191 8.803201 TTGTGTAAATGCGATCAAACATAAAA 57.197 26.923 0.00 0.00 0.00 1.52
191 192 8.803201 TGTGTAAATGCGATCAAACATAAAAA 57.197 26.923 0.00 0.00 0.00 1.94
214 215 9.676195 AAAAAGTTTGACTTTCCAACAAAATTG 57.324 25.926 6.53 0.00 46.78 2.32
215 216 6.983474 AGTTTGACTTTCCAACAAAATTGG 57.017 33.333 0.00 0.00 40.87 3.16
216 217 6.706295 AGTTTGACTTTCCAACAAAATTGGA 58.294 32.000 4.24 4.24 46.08 3.53
225 226 6.142818 TCCAACAAAATTGGAAGTACACTG 57.857 37.500 5.91 0.00 44.90 3.66
226 227 5.654650 TCCAACAAAATTGGAAGTACACTGT 59.345 36.000 5.91 0.00 44.90 3.55
227 228 6.153680 TCCAACAAAATTGGAAGTACACTGTT 59.846 34.615 5.91 0.00 44.90 3.16
228 229 6.816140 CCAACAAAATTGGAAGTACACTGTTT 59.184 34.615 0.00 0.00 42.06 2.83
229 230 7.010091 CCAACAAAATTGGAAGTACACTGTTTC 59.990 37.037 0.00 0.00 42.06 2.78
230 231 7.164230 ACAAAATTGGAAGTACACTGTTTCA 57.836 32.000 0.00 0.00 0.00 2.69
231 232 7.607250 ACAAAATTGGAAGTACACTGTTTCAA 58.393 30.769 0.00 0.00 0.00 2.69
232 233 7.759433 ACAAAATTGGAAGTACACTGTTTCAAG 59.241 33.333 0.00 0.00 0.00 3.02
233 234 6.391227 AATTGGAAGTACACTGTTTCAAGG 57.609 37.500 0.00 0.00 0.00 3.61
234 235 4.764050 TGGAAGTACACTGTTTCAAGGA 57.236 40.909 0.00 0.00 0.00 3.36
235 236 4.448210 TGGAAGTACACTGTTTCAAGGAC 58.552 43.478 0.00 0.00 0.00 3.85
236 237 3.493503 GGAAGTACACTGTTTCAAGGACG 59.506 47.826 0.00 0.00 0.00 4.79
237 238 4.365723 GAAGTACACTGTTTCAAGGACGA 58.634 43.478 0.00 0.00 0.00 4.20
238 239 4.395959 AGTACACTGTTTCAAGGACGAA 57.604 40.909 0.00 0.00 0.00 3.85
239 240 4.369182 AGTACACTGTTTCAAGGACGAAG 58.631 43.478 0.00 0.00 0.00 3.79
240 241 2.561569 ACACTGTTTCAAGGACGAAGG 58.438 47.619 0.00 0.00 0.00 3.46
241 242 1.873591 CACTGTTTCAAGGACGAAGGG 59.126 52.381 0.00 0.00 0.00 3.95
242 243 1.766496 ACTGTTTCAAGGACGAAGGGA 59.234 47.619 0.00 0.00 0.00 4.20
243 244 2.224305 ACTGTTTCAAGGACGAAGGGAG 60.224 50.000 0.00 0.00 0.00 4.30
244 245 1.766496 TGTTTCAAGGACGAAGGGAGT 59.234 47.619 0.00 0.00 0.00 3.85
245 246 2.967201 TGTTTCAAGGACGAAGGGAGTA 59.033 45.455 0.00 0.00 0.00 2.59
246 247 3.006537 TGTTTCAAGGACGAAGGGAGTAG 59.993 47.826 0.00 0.00 0.00 2.57
247 248 1.183549 TCAAGGACGAAGGGAGTAGC 58.816 55.000 0.00 0.00 0.00 3.58
248 249 0.175989 CAAGGACGAAGGGAGTAGCC 59.824 60.000 0.00 0.00 0.00 3.93
249 250 0.041386 AAGGACGAAGGGAGTAGCCT 59.959 55.000 0.00 0.00 36.66 4.58
250 251 0.924823 AGGACGAAGGGAGTAGCCTA 59.075 55.000 0.00 0.00 36.66 3.93
251 252 1.031235 GGACGAAGGGAGTAGCCTAC 58.969 60.000 0.00 0.00 36.66 3.18
252 253 1.409942 GGACGAAGGGAGTAGCCTACT 60.410 57.143 3.50 3.50 42.86 2.57
253 254 2.377073 GACGAAGGGAGTAGCCTACTT 58.623 52.381 5.74 0.00 39.59 2.24
254 255 2.099427 GACGAAGGGAGTAGCCTACTTG 59.901 54.545 5.74 0.00 39.59 3.16
255 256 2.291411 ACGAAGGGAGTAGCCTACTTGA 60.291 50.000 5.74 0.00 39.59 3.02
256 257 2.758979 CGAAGGGAGTAGCCTACTTGAA 59.241 50.000 5.74 0.00 39.59 2.69
257 258 3.181485 CGAAGGGAGTAGCCTACTTGAAG 60.181 52.174 5.74 0.00 39.59 3.02
258 259 2.112190 AGGGAGTAGCCTACTTGAAGC 58.888 52.381 5.74 0.00 39.59 3.86
259 260 1.139256 GGGAGTAGCCTACTTGAAGCC 59.861 57.143 5.74 2.01 39.59 4.35
260 261 1.831736 GGAGTAGCCTACTTGAAGCCA 59.168 52.381 5.74 0.00 39.59 4.75
261 262 2.159028 GGAGTAGCCTACTTGAAGCCAG 60.159 54.545 5.74 0.00 39.59 4.85
262 263 1.834263 AGTAGCCTACTTGAAGCCAGG 59.166 52.381 0.00 8.64 34.86 4.45
263 264 1.831736 GTAGCCTACTTGAAGCCAGGA 59.168 52.381 15.44 0.00 0.00 3.86
264 265 0.615850 AGCCTACTTGAAGCCAGGAC 59.384 55.000 15.44 8.12 0.00 3.85
265 266 0.324943 GCCTACTTGAAGCCAGGACA 59.675 55.000 15.44 0.00 0.00 4.02
266 267 1.065126 GCCTACTTGAAGCCAGGACAT 60.065 52.381 15.44 0.00 0.00 3.06
267 268 2.619074 GCCTACTTGAAGCCAGGACATT 60.619 50.000 15.44 0.00 0.00 2.71
268 269 3.274288 CCTACTTGAAGCCAGGACATTC 58.726 50.000 7.48 0.00 0.00 2.67
269 270 2.206576 ACTTGAAGCCAGGACATTCC 57.793 50.000 0.00 0.00 36.58 3.01
270 271 1.425066 ACTTGAAGCCAGGACATTCCA 59.575 47.619 0.00 0.00 39.61 3.53
271 272 2.158475 ACTTGAAGCCAGGACATTCCAA 60.158 45.455 0.00 0.00 39.61 3.53
272 273 2.205022 TGAAGCCAGGACATTCCAAG 57.795 50.000 0.00 0.00 39.61 3.61
273 274 0.813821 GAAGCCAGGACATTCCAAGC 59.186 55.000 0.00 0.00 39.61 4.01
274 275 0.613012 AAGCCAGGACATTCCAAGCC 60.613 55.000 0.00 0.00 39.61 4.35
275 276 1.304381 GCCAGGACATTCCAAGCCA 60.304 57.895 0.00 0.00 39.61 4.75
276 277 1.318158 GCCAGGACATTCCAAGCCAG 61.318 60.000 0.00 0.00 39.61 4.85
277 278 0.038744 CCAGGACATTCCAAGCCAGT 59.961 55.000 0.00 0.00 39.61 4.00
278 279 1.171308 CAGGACATTCCAAGCCAGTG 58.829 55.000 0.00 0.00 39.61 3.66
279 280 0.038744 AGGACATTCCAAGCCAGTGG 59.961 55.000 4.20 4.20 39.61 4.00
280 281 0.967380 GGACATTCCAAGCCAGTGGG 60.967 60.000 12.15 0.00 39.34 4.61
320 321 2.523168 TGGCTCGACCACAGGACA 60.523 61.111 3.02 0.00 46.36 4.02
324 325 0.033504 GCTCGACCACAGGACAGAAA 59.966 55.000 0.00 0.00 0.00 2.52
325 326 1.338200 GCTCGACCACAGGACAGAAAT 60.338 52.381 0.00 0.00 0.00 2.17
334 335 0.486879 AGGACAGAAATGGGCCCAAA 59.513 50.000 32.58 6.36 0.00 3.28
340 341 1.079323 AGAAATGGGCCCAAACAGGAT 59.921 47.619 32.58 7.43 41.22 3.24
361 362 1.683365 GGCATCCAGGTGGCACATT 60.683 57.895 20.82 3.79 44.52 2.71
363 364 0.108520 GCATCCAGGTGGCACATTTG 60.109 55.000 20.82 13.70 44.52 2.32
374 375 1.588082 CACATTTGGTGGCTGAGGC 59.412 57.895 0.00 0.00 44.04 4.70
383 384 1.486726 GGTGGCTGAGGCTTAGTACAT 59.513 52.381 7.74 0.00 38.73 2.29
384 385 2.483889 GGTGGCTGAGGCTTAGTACATC 60.484 54.545 7.74 4.63 38.73 3.06
385 386 1.762957 TGGCTGAGGCTTAGTACATCC 59.237 52.381 7.74 0.86 38.73 3.51
386 387 1.762957 GGCTGAGGCTTAGTACATCCA 59.237 52.381 8.20 0.00 38.73 3.41
387 388 2.224161 GGCTGAGGCTTAGTACATCCAG 60.224 54.545 8.20 0.00 38.73 3.86
388 389 2.695666 GCTGAGGCTTAGTACATCCAGA 59.304 50.000 8.20 0.00 35.22 3.86
389 390 3.491792 GCTGAGGCTTAGTACATCCAGAC 60.492 52.174 8.20 0.00 35.22 3.51
390 391 3.957497 CTGAGGCTTAGTACATCCAGACT 59.043 47.826 0.00 0.00 0.00 3.24
391 392 3.954904 TGAGGCTTAGTACATCCAGACTC 59.045 47.826 8.74 8.74 41.26 3.36
392 393 3.301274 AGGCTTAGTACATCCAGACTCC 58.699 50.000 0.00 0.00 0.00 3.85
393 394 3.031736 GGCTTAGTACATCCAGACTCCA 58.968 50.000 0.00 0.00 0.00 3.86
398 399 1.899814 GTACATCCAGACTCCACCACA 59.100 52.381 0.00 0.00 0.00 4.17
399 400 1.434188 ACATCCAGACTCCACCACAA 58.566 50.000 0.00 0.00 0.00 3.33
401 402 0.321671 ATCCAGACTCCACCACAACG 59.678 55.000 0.00 0.00 0.00 4.10
415 416 3.261580 CCACAACGACATGCTAAGATGA 58.738 45.455 0.00 0.00 0.00 2.92
416 417 3.308053 CCACAACGACATGCTAAGATGAG 59.692 47.826 0.00 0.00 0.00 2.90
417 418 4.176271 CACAACGACATGCTAAGATGAGA 58.824 43.478 0.00 0.00 0.00 3.27
418 419 4.807834 CACAACGACATGCTAAGATGAGAT 59.192 41.667 0.00 0.00 0.00 2.75
419 420 4.807834 ACAACGACATGCTAAGATGAGATG 59.192 41.667 0.00 0.00 0.00 2.90
429 430 5.653330 TGCTAAGATGAGATGCATGGAAAAA 59.347 36.000 2.46 0.00 37.34 1.94
430 431 6.183360 TGCTAAGATGAGATGCATGGAAAAAG 60.183 38.462 2.46 0.00 37.34 2.27
431 432 6.039047 GCTAAGATGAGATGCATGGAAAAAGA 59.961 38.462 2.46 0.00 37.34 2.52
432 433 7.255520 GCTAAGATGAGATGCATGGAAAAAGAT 60.256 37.037 2.46 0.00 37.34 2.40
433 434 6.636562 AGATGAGATGCATGGAAAAAGATC 57.363 37.500 2.46 0.00 37.34 2.75
448 449 8.209584 TGGAAAAAGATCAATCAAACCATTCAA 58.790 29.630 0.00 0.00 0.00 2.69
465 466 4.669206 TTCAACCATGCATGTCAAAACT 57.331 36.364 24.58 0.00 0.00 2.66
475 476 7.910162 CCATGCATGTCAAAACTATTACACTAC 59.090 37.037 24.58 0.00 0.00 2.73
476 477 8.668353 CATGCATGTCAAAACTATTACACTACT 58.332 33.333 18.91 0.00 0.00 2.57
477 478 8.251750 TGCATGTCAAAACTATTACACTACTC 57.748 34.615 0.00 0.00 0.00 2.59
479 480 7.201617 GCATGTCAAAACTATTACACTACTCCC 60.202 40.741 0.00 0.00 0.00 4.30
485 497 4.459330 ACTATTACACTACTCCCTCCGTC 58.541 47.826 0.00 0.00 0.00 4.79
487 499 2.414994 TACACTACTCCCTCCGTCTG 57.585 55.000 0.00 0.00 0.00 3.51
489 501 0.034380 CACTACTCCCTCCGTCTGGA 60.034 60.000 0.00 0.00 43.88 3.86
492 504 2.292323 ACTACTCCCTCCGTCTGGAAAT 60.292 50.000 0.00 0.00 45.87 2.17
493 505 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
497 509 1.067212 CCCTCCGTCTGGAAATACTCG 59.933 57.143 0.00 0.00 45.87 4.18
498 510 1.749634 CCTCCGTCTGGAAATACTCGT 59.250 52.381 0.00 0.00 45.87 4.18
499 511 2.223525 CCTCCGTCTGGAAATACTCGTC 60.224 54.545 0.00 0.00 45.87 4.20
502 514 3.256383 TCCGTCTGGAAATACTCGTCAAA 59.744 43.478 0.00 0.00 42.85 2.69
506 518 5.404366 CGTCTGGAAATACTCGTCAAAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
510 522 6.234920 TGGAAATACTCGTCAAAGAAATGGA 58.765 36.000 0.00 0.00 0.00 3.41
513 525 7.148239 GGAAATACTCGTCAAAGAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
515 527 8.964476 AATACTCGTCAAAGAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
516 528 6.668541 ACTCGTCAAAGAAATGGATGTATG 57.331 37.500 0.00 0.00 0.00 2.39
517 529 6.173339 ACTCGTCAAAGAAATGGATGTATGT 58.827 36.000 0.00 0.00 0.00 2.29
518 530 7.327975 ACTCGTCAAAGAAATGGATGTATGTA 58.672 34.615 0.00 0.00 0.00 2.29
519 531 7.492669 ACTCGTCAAAGAAATGGATGTATGTAG 59.507 37.037 0.00 0.00 0.00 2.74
521 533 7.491372 TCGTCAAAGAAATGGATGTATGTAGAC 59.509 37.037 0.00 0.00 0.00 2.59
522 534 7.277760 CGTCAAAGAAATGGATGTATGTAGACA 59.722 37.037 0.00 0.00 0.00 3.41
524 536 9.112725 TCAAAGAAATGGATGTATGTAGACATG 57.887 33.333 5.39 0.00 40.18 3.21
525 537 8.896744 CAAAGAAATGGATGTATGTAGACATGT 58.103 33.333 0.00 0.00 40.18 3.21
526 538 9.466497 AAAGAAATGGATGTATGTAGACATGTT 57.534 29.630 0.00 0.00 40.18 2.71
527 539 9.466497 AAGAAATGGATGTATGTAGACATGTTT 57.534 29.630 0.00 0.00 40.18 2.83
528 540 9.466497 AGAAATGGATGTATGTAGACATGTTTT 57.534 29.630 0.00 0.00 40.18 2.43
531 543 9.905713 AATGGATGTATGTAGACATGTTTTAGT 57.094 29.630 0.00 0.00 40.18 2.24
532 544 9.905713 ATGGATGTATGTAGACATGTTTTAGTT 57.094 29.630 0.00 0.00 40.18 2.24
533 545 9.733556 TGGATGTATGTAGACATGTTTTAGTTT 57.266 29.630 0.00 0.00 40.18 2.66
561 573 9.618890 AGATACATCCATTTTTATCCATATCGG 57.381 33.333 0.00 0.00 0.00 4.18
563 575 5.123820 ACATCCATTTTTATCCATATCGGCG 59.876 40.000 0.00 0.00 33.14 6.46
564 576 4.900684 TCCATTTTTATCCATATCGGCGA 58.099 39.130 13.87 13.87 33.14 5.54
565 577 4.693566 TCCATTTTTATCCATATCGGCGAC 59.306 41.667 13.76 0.00 33.14 5.19
566 578 4.454161 CCATTTTTATCCATATCGGCGACA 59.546 41.667 13.76 0.00 33.14 4.35
567 579 5.049060 CCATTTTTATCCATATCGGCGACAA 60.049 40.000 13.76 3.44 33.14 3.18
569 581 4.330944 TTTATCCATATCGGCGACAAGT 57.669 40.909 13.76 0.00 33.14 3.16
570 582 5.456548 TTTATCCATATCGGCGACAAGTA 57.543 39.130 13.76 0.00 33.14 2.24
571 583 5.456548 TTATCCATATCGGCGACAAGTAA 57.543 39.130 13.76 4.52 33.14 2.24
572 584 4.537135 ATCCATATCGGCGACAAGTAAT 57.463 40.909 13.76 0.00 33.14 1.89
574 586 4.304110 TCCATATCGGCGACAAGTAATTC 58.696 43.478 13.76 0.00 33.14 2.17
576 588 1.567504 ATCGGCGACAAGTAATTCCG 58.432 50.000 13.76 0.00 38.34 4.30
577 589 0.458889 TCGGCGACAAGTAATTCCGG 60.459 55.000 4.99 0.00 37.65 5.14
578 590 0.458889 CGGCGACAAGTAATTCCGGA 60.459 55.000 0.00 0.00 33.85 5.14
579 591 1.004595 GGCGACAAGTAATTCCGGAC 58.995 55.000 1.83 0.00 0.00 4.79
580 592 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
581 593 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
582 594 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
583 595 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
585 597 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
586 598 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
587 599 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
588 600 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
590 602 0.754587 ATTCCGGACGGAGGGAGTAC 60.755 60.000 13.64 0.00 46.06 2.73
591 603 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
599 1435 3.029570 ACGGAGGGAGTACTTGTATTCC 58.970 50.000 12.20 12.20 0.00 3.01
686 1630 7.188468 ACAAATAATTTCCACAACAACATGC 57.812 32.000 0.00 0.00 0.00 4.06
705 1649 3.211865 TGCGGAGTATCATCTAGTTCGT 58.788 45.455 0.00 0.00 36.25 3.85
729 1673 3.585748 ATGTCGTCGTTTGTTGTCTTG 57.414 42.857 0.00 0.00 0.00 3.02
815 1760 7.560368 AGTACATCTAAGACATCCTGGAAAAG 58.440 38.462 0.00 0.00 0.00 2.27
846 1791 7.574607 CCAACTCAAAGTATCTATAACCCCTT 58.425 38.462 0.00 0.00 0.00 3.95
853 1817 9.331282 CAAAGTATCTATAACCCCTTCTCAAAG 57.669 37.037 0.00 0.00 0.00 2.77
887 1851 6.014647 TGAGAAGTTAACCTAGAACTAGCCA 58.985 40.000 0.88 0.00 36.10 4.75
909 1930 8.548877 AGCCATTCTTCTAGTCCTTAAATACAA 58.451 33.333 0.00 0.00 0.00 2.41
917 1938 7.618137 TCTAGTCCTTAAATACAACTCAACCC 58.382 38.462 0.00 0.00 0.00 4.11
963 1984 4.359971 ACTTAACTTTTCAAAACGCCGT 57.640 36.364 0.00 0.00 0.00 5.68
974 1995 1.658994 AAACGCCGTGACTTCTTCAA 58.341 45.000 0.00 0.00 35.39 2.69
980 2001 3.326747 GCCGTGACTTCTTCAACTACAT 58.673 45.455 0.00 0.00 35.39 2.29
999 2020 1.852157 TTGACCCTCAGCCCATGTCC 61.852 60.000 0.00 0.00 0.00 4.02
1035 2056 3.263941 GCCACCGCGAGTTTCATT 58.736 55.556 8.23 0.00 0.00 2.57
1056 2078 2.283173 TCTCGAGCTCTGGTGGCA 60.283 61.111 12.85 0.00 0.00 4.92
1057 2079 1.674764 CTCTCGAGCTCTGGTGGCAT 61.675 60.000 12.85 0.00 0.00 4.40
1072 2094 1.884926 GCATGTGCGACCTCTAGCC 60.885 63.158 0.00 0.00 0.00 3.93
1092 2114 2.106683 CCGACCCATGCGAGGTTTC 61.107 63.158 0.00 0.00 37.88 2.78
1094 2116 1.002624 GACCCATGCGAGGTTTCCA 60.003 57.895 0.00 0.00 37.88 3.53
1095 2117 0.394352 GACCCATGCGAGGTTTCCAT 60.394 55.000 0.00 0.00 37.88 3.41
1096 2118 0.394352 ACCCATGCGAGGTTTCCATC 60.394 55.000 0.00 0.00 32.05 3.51
1204 2242 9.848710 AGGAGTTAAAAATTTAGGATAGTAGGC 57.151 33.333 0.00 0.00 0.00 3.93
1226 2771 8.298729 AGGCTATTTAGATGAAAGGGAAAAAG 57.701 34.615 0.00 0.00 0.00 2.27
1240 2864 5.583932 AGGGAAAAAGAAATAGTGAGGCAT 58.416 37.500 0.00 0.00 0.00 4.40
1263 2887 1.443802 AGCCGACAAAAGAAGCTAGC 58.556 50.000 6.62 6.62 30.46 3.42
1307 2946 2.303890 TGCTCATCATCAGTTGTCCACT 59.696 45.455 0.00 0.00 35.35 4.00
1308 2947 3.515104 TGCTCATCATCAGTTGTCCACTA 59.485 43.478 0.00 0.00 32.76 2.74
1309 2948 4.118410 GCTCATCATCAGTTGTCCACTAG 58.882 47.826 0.00 0.00 32.76 2.57
1310 2949 4.142071 GCTCATCATCAGTTGTCCACTAGA 60.142 45.833 0.00 0.00 32.76 2.43
1311 2950 5.588958 TCATCATCAGTTGTCCACTAGAG 57.411 43.478 0.00 0.00 32.76 2.43
1347 2995 2.335011 GTTGTCCCTTTGCGTGCC 59.665 61.111 0.00 0.00 0.00 5.01
1350 2998 3.056328 GTCCCTTTGCGTGCCCTC 61.056 66.667 0.00 0.00 0.00 4.30
1351 2999 3.249189 TCCCTTTGCGTGCCCTCT 61.249 61.111 0.00 0.00 0.00 3.69
1353 3001 2.629656 CCCTTTGCGTGCCCTCTTG 61.630 63.158 0.00 0.00 0.00 3.02
1355 3003 0.605319 CCTTTGCGTGCCCTCTTGTA 60.605 55.000 0.00 0.00 0.00 2.41
1356 3004 1.453155 CTTTGCGTGCCCTCTTGTAT 58.547 50.000 0.00 0.00 0.00 2.29
1357 3005 1.398390 CTTTGCGTGCCCTCTTGTATC 59.602 52.381 0.00 0.00 0.00 2.24
1358 3006 0.613260 TTGCGTGCCCTCTTGTATCT 59.387 50.000 0.00 0.00 0.00 1.98
1360 3008 0.461961 GCGTGCCCTCTTGTATCTCT 59.538 55.000 0.00 0.00 0.00 3.10
1361 3009 1.681793 GCGTGCCCTCTTGTATCTCTA 59.318 52.381 0.00 0.00 0.00 2.43
1362 3010 2.287909 GCGTGCCCTCTTGTATCTCTAG 60.288 54.545 0.00 0.00 0.00 2.43
1363 3011 2.952978 CGTGCCCTCTTGTATCTCTAGT 59.047 50.000 0.00 0.00 0.00 2.57
1364 3012 4.135306 CGTGCCCTCTTGTATCTCTAGTA 58.865 47.826 0.00 0.00 0.00 1.82
1365 3013 4.214545 CGTGCCCTCTTGTATCTCTAGTAG 59.785 50.000 0.00 0.00 0.00 2.57
1366 3014 5.378332 GTGCCCTCTTGTATCTCTAGTAGA 58.622 45.833 0.00 0.00 39.02 2.59
1367 3015 5.828859 GTGCCCTCTTGTATCTCTAGTAGAA 59.171 44.000 0.64 0.00 37.89 2.10
1368 3016 6.492087 GTGCCCTCTTGTATCTCTAGTAGAAT 59.508 42.308 0.64 1.48 37.89 2.40
1386 3034 8.774546 AGTAGAATTCTAGATCCATCAACTCA 57.225 34.615 15.58 0.00 0.00 3.41
1388 3036 9.474920 GTAGAATTCTAGATCCATCAACTCAAG 57.525 37.037 15.58 0.00 0.00 3.02
1390 3038 9.206690 AGAATTCTAGATCCATCAACTCAAGTA 57.793 33.333 6.06 0.00 0.00 2.24
1405 3060 0.462759 AAGTAGCGCTTGATCCAGCC 60.463 55.000 18.68 6.24 36.31 4.85
1433 3100 0.954449 GATCCATGGAGCATCTGCCG 60.954 60.000 25.01 0.00 43.38 5.69
1464 3131 1.611851 CTGGAGGAGCTGGAGGTGT 60.612 63.158 0.00 0.00 0.00 4.16
1556 3223 1.303317 GTTCCGGCTGGTCAACCAT 60.303 57.895 12.43 0.00 46.46 3.55
1753 3423 0.165944 GGCGACCGTTGTCATTCTTG 59.834 55.000 0.00 0.00 41.85 3.02
1907 3577 2.178890 CCTGGATGAAGAGCAGCGC 61.179 63.158 0.00 0.00 32.46 5.92
1943 3613 3.197790 CGTGGCAGCATCTTCCGG 61.198 66.667 0.00 0.00 0.00 5.14
2061 3737 4.056125 GCGGCCTGCAGGTTTTCC 62.056 66.667 32.81 23.50 45.45 3.13
2076 3752 1.451449 TTTCCATGGTGGTAGGTGGT 58.549 50.000 12.58 0.00 39.03 4.16
2077 3753 0.695924 TTCCATGGTGGTAGGTGGTG 59.304 55.000 12.58 0.00 39.03 4.17
2079 3755 0.404040 CCATGGTGGTAGGTGGTGTT 59.596 55.000 2.57 0.00 31.35 3.32
2080 3756 1.203001 CCATGGTGGTAGGTGGTGTTT 60.203 52.381 2.57 0.00 31.35 2.83
2081 3757 2.593026 CATGGTGGTAGGTGGTGTTTT 58.407 47.619 0.00 0.00 0.00 2.43
2084 3760 1.951602 GGTGGTAGGTGGTGTTTTGTC 59.048 52.381 0.00 0.00 0.00 3.18
2282 3959 1.216710 GCTTGTCGTCAGGAGGAGG 59.783 63.158 0.00 0.00 0.00 4.30
2292 3969 0.978146 CAGGAGGAGGTGTACAGGGG 60.978 65.000 0.00 0.00 0.00 4.79
2362 4039 4.785453 GGCTCCAAGGTCGGCCTG 62.785 72.222 10.71 3.56 46.33 4.85
2395 4075 1.885388 CGCCGTCGCCCAATCATAA 60.885 57.895 0.00 0.00 0.00 1.90
2396 4076 1.831389 CGCCGTCGCCCAATCATAAG 61.831 60.000 0.00 0.00 0.00 1.73
2397 4077 1.941812 CCGTCGCCCAATCATAAGC 59.058 57.895 0.00 0.00 0.00 3.09
2398 4078 0.813610 CCGTCGCCCAATCATAAGCA 60.814 55.000 0.00 0.00 0.00 3.91
2399 4079 1.229428 CGTCGCCCAATCATAAGCAT 58.771 50.000 0.00 0.00 0.00 3.79
2400 4080 1.603802 CGTCGCCCAATCATAAGCATT 59.396 47.619 0.00 0.00 0.00 3.56
2401 4081 2.349817 CGTCGCCCAATCATAAGCATTC 60.350 50.000 0.00 0.00 0.00 2.67
2402 4082 2.618241 GTCGCCCAATCATAAGCATTCA 59.382 45.455 0.00 0.00 0.00 2.57
2403 4083 3.254166 GTCGCCCAATCATAAGCATTCAT 59.746 43.478 0.00 0.00 0.00 2.57
2404 4084 3.890756 TCGCCCAATCATAAGCATTCATT 59.109 39.130 0.00 0.00 0.00 2.57
2405 4085 4.341806 TCGCCCAATCATAAGCATTCATTT 59.658 37.500 0.00 0.00 0.00 2.32
2406 4086 5.051816 CGCCCAATCATAAGCATTCATTTT 58.948 37.500 0.00 0.00 0.00 1.82
2407 4087 5.524646 CGCCCAATCATAAGCATTCATTTTT 59.475 36.000 0.00 0.00 0.00 1.94
2430 4110 9.927668 TTTTTCTTCTTCTTCTTGTCATTTTGT 57.072 25.926 0.00 0.00 0.00 2.83
2433 4113 8.964476 TCTTCTTCTTCTTGTCATTTTGTACT 57.036 30.769 0.00 0.00 0.00 2.73
2434 4114 9.046296 TCTTCTTCTTCTTGTCATTTTGTACTC 57.954 33.333 0.00 0.00 0.00 2.59
2435 4115 7.730364 TCTTCTTCTTGTCATTTTGTACTCC 57.270 36.000 0.00 0.00 0.00 3.85
2436 4116 7.509546 TCTTCTTCTTGTCATTTTGTACTCCT 58.490 34.615 0.00 0.00 0.00 3.69
2437 4117 8.647796 TCTTCTTCTTGTCATTTTGTACTCCTA 58.352 33.333 0.00 0.00 0.00 2.94
2438 4118 9.442047 CTTCTTCTTGTCATTTTGTACTCCTAT 57.558 33.333 0.00 0.00 0.00 2.57
2446 4126 9.733556 TGTCATTTTGTACTCCTATATGTTTGT 57.266 29.630 0.00 0.00 0.00 2.83
2450 4130 7.997107 TTTGTACTCCTATATGTTTGTAGCG 57.003 36.000 0.00 0.00 0.00 4.26
2451 4131 6.080648 TGTACTCCTATATGTTTGTAGCGG 57.919 41.667 0.00 0.00 0.00 5.52
2452 4132 4.602340 ACTCCTATATGTTTGTAGCGGG 57.398 45.455 0.00 0.00 0.00 6.13
2453 4133 3.244112 ACTCCTATATGTTTGTAGCGGGC 60.244 47.826 0.00 0.00 0.00 6.13
2454 4134 2.038033 TCCTATATGTTTGTAGCGGGCC 59.962 50.000 0.00 0.00 0.00 5.80
2455 4135 2.066262 CTATATGTTTGTAGCGGGCCG 58.934 52.381 24.35 24.35 0.00 6.13
2456 4136 0.466543 ATATGTTTGTAGCGGGCCGA 59.533 50.000 33.44 6.69 0.00 5.54
2457 4137 0.179094 TATGTTTGTAGCGGGCCGAG 60.179 55.000 33.44 0.84 0.00 4.63
2458 4138 1.895020 ATGTTTGTAGCGGGCCGAGA 61.895 55.000 33.44 13.92 0.00 4.04
2459 4139 1.375013 GTTTGTAGCGGGCCGAGAA 60.375 57.895 33.44 12.11 0.00 2.87
3158 4838 2.624838 AGCAAACATGCAAGCTTACACT 59.375 40.909 0.27 0.00 37.25 3.55
3290 4974 7.028962 CACACACACAAAAATCAGAGAAGAAA 58.971 34.615 0.00 0.00 0.00 2.52
3327 5011 1.376649 AGAGTTGATGGGAAAGGCCT 58.623 50.000 0.00 0.00 36.66 5.19
3397 5081 9.053840 CATGCTTTATATTGTCTGAGAGAACAT 57.946 33.333 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.650714 TCCAAAGATAGGCAGTACTTAAGTATA 57.349 33.333 18.03 6.94 32.54 1.47
33 34 8.548880 TCCAAAGATAGGCAGTACTTAAGTAT 57.451 34.615 18.03 4.91 32.54 2.12
34 35 7.966339 TCCAAAGATAGGCAGTACTTAAGTA 57.034 36.000 11.38 11.38 0.00 2.24
35 36 6.869206 TCCAAAGATAGGCAGTACTTAAGT 57.131 37.500 13.68 13.68 0.00 2.24
36 37 8.041323 TCTTTCCAAAGATAGGCAGTACTTAAG 58.959 37.037 0.00 0.00 39.95 1.85
37 38 7.913789 TCTTTCCAAAGATAGGCAGTACTTAA 58.086 34.615 0.00 0.00 39.95 1.85
38 39 7.490657 TCTTTCCAAAGATAGGCAGTACTTA 57.509 36.000 0.00 0.00 39.95 2.24
39 40 6.374417 TCTTTCCAAAGATAGGCAGTACTT 57.626 37.500 0.00 0.00 39.95 2.24
40 41 6.374417 TTCTTTCCAAAGATAGGCAGTACT 57.626 37.500 2.59 0.00 43.92 2.73
41 42 7.631717 ATTTCTTTCCAAAGATAGGCAGTAC 57.368 36.000 2.59 0.00 43.92 2.73
42 43 9.747898 TTAATTTCTTTCCAAAGATAGGCAGTA 57.252 29.630 2.59 0.00 43.92 2.74
43 44 8.650143 TTAATTTCTTTCCAAAGATAGGCAGT 57.350 30.769 2.59 0.00 43.92 4.40
51 52 9.253832 TGGCTCATATTAATTTCTTTCCAAAGA 57.746 29.630 0.00 0.00 42.91 2.52
54 55 9.425248 AGATGGCTCATATTAATTTCTTTCCAA 57.575 29.630 0.00 0.00 0.00 3.53
70 71 8.829746 TCACCAAATATTCTATAGATGGCTCAT 58.170 33.333 16.13 3.98 0.00 2.90
71 72 8.206126 TCACCAAATATTCTATAGATGGCTCA 57.794 34.615 16.13 0.00 0.00 4.26
72 73 9.507329 TTTCACCAAATATTCTATAGATGGCTC 57.493 33.333 16.13 0.00 0.00 4.70
120 121 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
121 122 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
122 123 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
123 124 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
124 125 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
127 128 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
128 129 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
129 130 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
130 131 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
131 132 9.467258 CCAACATTTATGCCATCAAATTAGTAG 57.533 33.333 0.00 0.00 0.00 2.57
132 133 8.976353 ACCAACATTTATGCCATCAAATTAGTA 58.024 29.630 0.00 0.00 0.00 1.82
133 134 7.850193 ACCAACATTTATGCCATCAAATTAGT 58.150 30.769 0.00 0.00 0.00 2.24
134 135 8.199449 AGACCAACATTTATGCCATCAAATTAG 58.801 33.333 0.00 0.00 0.00 1.73
135 136 8.076910 AGACCAACATTTATGCCATCAAATTA 57.923 30.769 0.00 0.00 0.00 1.40
136 137 6.949715 AGACCAACATTTATGCCATCAAATT 58.050 32.000 0.00 0.00 0.00 1.82
137 138 6.549433 AGACCAACATTTATGCCATCAAAT 57.451 33.333 0.00 0.00 0.00 2.32
138 139 5.999205 AGACCAACATTTATGCCATCAAA 57.001 34.783 0.00 0.00 0.00 2.69
139 140 7.658525 AATAGACCAACATTTATGCCATCAA 57.341 32.000 0.00 0.00 0.00 2.57
140 141 8.938801 ATAATAGACCAACATTTATGCCATCA 57.061 30.769 0.00 0.00 0.00 3.07
141 142 9.630098 CAATAATAGACCAACATTTATGCCATC 57.370 33.333 0.00 0.00 0.00 3.51
142 143 9.146586 ACAATAATAGACCAACATTTATGCCAT 57.853 29.630 0.00 0.00 0.00 4.40
143 144 8.412456 CACAATAATAGACCAACATTTATGCCA 58.588 33.333 0.00 0.00 0.00 4.92
144 145 8.413229 ACACAATAATAGACCAACATTTATGCC 58.587 33.333 0.00 0.00 0.00 4.40
150 151 9.801873 GCATTTACACAATAATAGACCAACATT 57.198 29.630 0.00 0.00 0.00 2.71
151 152 8.128582 CGCATTTACACAATAATAGACCAACAT 58.871 33.333 0.00 0.00 0.00 2.71
152 153 7.334671 TCGCATTTACACAATAATAGACCAACA 59.665 33.333 0.00 0.00 0.00 3.33
153 154 7.690228 TCGCATTTACACAATAATAGACCAAC 58.310 34.615 0.00 0.00 0.00 3.77
154 155 7.851387 TCGCATTTACACAATAATAGACCAA 57.149 32.000 0.00 0.00 0.00 3.67
155 156 7.713073 TGATCGCATTTACACAATAATAGACCA 59.287 33.333 0.00 0.00 0.00 4.02
156 157 8.083462 TGATCGCATTTACACAATAATAGACC 57.917 34.615 0.00 0.00 0.00 3.85
157 158 9.929722 TTTGATCGCATTTACACAATAATAGAC 57.070 29.630 0.00 0.00 0.00 2.59
158 159 9.929722 GTTTGATCGCATTTACACAATAATAGA 57.070 29.630 0.00 0.00 0.00 1.98
159 160 9.715123 TGTTTGATCGCATTTACACAATAATAG 57.285 29.630 0.00 0.00 0.00 1.73
164 165 8.978564 TTTATGTTTGATCGCATTTACACAAT 57.021 26.923 3.20 0.00 0.00 2.71
165 166 8.803201 TTTTATGTTTGATCGCATTTACACAA 57.197 26.923 3.20 0.00 0.00 3.33
166 167 8.803201 TTTTTATGTTTGATCGCATTTACACA 57.197 26.923 3.20 0.00 0.00 3.72
191 192 7.164803 TCCAATTTTGTTGGAAAGTCAAACTT 58.835 30.769 7.03 0.00 44.90 2.66
192 193 6.706295 TCCAATTTTGTTGGAAAGTCAAACT 58.294 32.000 7.03 0.00 44.90 2.66
193 194 6.976636 TCCAATTTTGTTGGAAAGTCAAAC 57.023 33.333 7.03 0.00 44.90 2.93
202 203 5.654650 ACAGTGTACTTCCAATTTTGTTGGA 59.345 36.000 5.45 5.45 46.08 3.53
203 204 5.901552 ACAGTGTACTTCCAATTTTGTTGG 58.098 37.500 0.00 0.38 40.87 3.77
204 205 7.543868 TGAAACAGTGTACTTCCAATTTTGTTG 59.456 33.333 0.00 0.00 0.00 3.33
205 206 7.607250 TGAAACAGTGTACTTCCAATTTTGTT 58.393 30.769 0.00 0.00 0.00 2.83
206 207 7.164230 TGAAACAGTGTACTTCCAATTTTGT 57.836 32.000 0.00 0.00 0.00 2.83
207 208 7.222611 CCTTGAAACAGTGTACTTCCAATTTTG 59.777 37.037 0.00 0.00 0.00 2.44
208 209 7.123547 TCCTTGAAACAGTGTACTTCCAATTTT 59.876 33.333 0.00 0.00 0.00 1.82
209 210 6.605594 TCCTTGAAACAGTGTACTTCCAATTT 59.394 34.615 0.00 0.00 0.00 1.82
210 211 6.039382 GTCCTTGAAACAGTGTACTTCCAATT 59.961 38.462 0.00 0.00 0.00 2.32
211 212 5.531287 GTCCTTGAAACAGTGTACTTCCAAT 59.469 40.000 0.00 0.00 0.00 3.16
212 213 4.879545 GTCCTTGAAACAGTGTACTTCCAA 59.120 41.667 0.00 0.00 0.00 3.53
213 214 4.448210 GTCCTTGAAACAGTGTACTTCCA 58.552 43.478 0.00 0.00 0.00 3.53
214 215 3.493503 CGTCCTTGAAACAGTGTACTTCC 59.506 47.826 0.00 0.00 0.00 3.46
215 216 4.365723 TCGTCCTTGAAACAGTGTACTTC 58.634 43.478 0.00 0.00 0.00 3.01
216 217 4.395959 TCGTCCTTGAAACAGTGTACTT 57.604 40.909 0.00 0.00 0.00 2.24
217 218 4.369182 CTTCGTCCTTGAAACAGTGTACT 58.631 43.478 0.00 0.00 0.00 2.73
218 219 3.493503 CCTTCGTCCTTGAAACAGTGTAC 59.506 47.826 0.00 0.00 0.00 2.90
219 220 3.493699 CCCTTCGTCCTTGAAACAGTGTA 60.494 47.826 0.00 0.00 0.00 2.90
220 221 2.561569 CCTTCGTCCTTGAAACAGTGT 58.438 47.619 0.00 0.00 0.00 3.55
221 222 1.873591 CCCTTCGTCCTTGAAACAGTG 59.126 52.381 0.00 0.00 0.00 3.66
222 223 1.766496 TCCCTTCGTCCTTGAAACAGT 59.234 47.619 0.00 0.00 0.00 3.55
223 224 2.224305 ACTCCCTTCGTCCTTGAAACAG 60.224 50.000 0.00 0.00 0.00 3.16
224 225 1.766496 ACTCCCTTCGTCCTTGAAACA 59.234 47.619 0.00 0.00 0.00 2.83
225 226 2.545537 ACTCCCTTCGTCCTTGAAAC 57.454 50.000 0.00 0.00 0.00 2.78
226 227 2.028385 GCTACTCCCTTCGTCCTTGAAA 60.028 50.000 0.00 0.00 0.00 2.69
227 228 1.549170 GCTACTCCCTTCGTCCTTGAA 59.451 52.381 0.00 0.00 0.00 2.69
228 229 1.183549 GCTACTCCCTTCGTCCTTGA 58.816 55.000 0.00 0.00 0.00 3.02
229 230 0.175989 GGCTACTCCCTTCGTCCTTG 59.824 60.000 0.00 0.00 0.00 3.61
230 231 0.041386 AGGCTACTCCCTTCGTCCTT 59.959 55.000 0.00 0.00 34.51 3.36
231 232 0.924823 TAGGCTACTCCCTTCGTCCT 59.075 55.000 0.00 0.00 36.41 3.85
232 233 1.031235 GTAGGCTACTCCCTTCGTCC 58.969 60.000 17.35 0.00 36.41 4.79
233 234 2.055684 AGTAGGCTACTCCCTTCGTC 57.944 55.000 21.30 0.00 36.41 4.20
234 235 2.100989 CAAGTAGGCTACTCCCTTCGT 58.899 52.381 26.39 7.28 38.26 3.85
235 236 2.376109 TCAAGTAGGCTACTCCCTTCG 58.624 52.381 26.39 11.51 38.26 3.79
236 237 3.431068 GCTTCAAGTAGGCTACTCCCTTC 60.431 52.174 26.39 12.70 38.26 3.46
237 238 2.502130 GCTTCAAGTAGGCTACTCCCTT 59.498 50.000 26.39 9.15 38.26 3.95
238 239 2.112190 GCTTCAAGTAGGCTACTCCCT 58.888 52.381 26.39 9.53 38.26 4.20
239 240 1.139256 GGCTTCAAGTAGGCTACTCCC 59.861 57.143 26.39 16.94 38.26 4.30
240 241 1.831736 TGGCTTCAAGTAGGCTACTCC 59.168 52.381 26.39 21.61 41.03 3.85
241 242 2.159028 CCTGGCTTCAAGTAGGCTACTC 60.159 54.545 26.39 13.79 41.03 2.59
242 243 1.834263 CCTGGCTTCAAGTAGGCTACT 59.166 52.381 21.30 21.30 41.03 2.57
243 244 1.831736 TCCTGGCTTCAAGTAGGCTAC 59.168 52.381 16.93 16.93 41.03 3.58
244 245 1.831736 GTCCTGGCTTCAAGTAGGCTA 59.168 52.381 5.27 0.00 41.03 3.93
245 246 0.615850 GTCCTGGCTTCAAGTAGGCT 59.384 55.000 5.27 0.00 41.03 4.58
246 247 0.324943 TGTCCTGGCTTCAAGTAGGC 59.675 55.000 5.27 0.00 40.84 3.93
247 248 3.274288 GAATGTCCTGGCTTCAAGTAGG 58.726 50.000 4.02 4.02 0.00 3.18
248 249 3.274288 GGAATGTCCTGGCTTCAAGTAG 58.726 50.000 0.00 0.00 32.53 2.57
249 250 2.642311 TGGAATGTCCTGGCTTCAAGTA 59.358 45.455 0.00 0.00 37.46 2.24
250 251 1.425066 TGGAATGTCCTGGCTTCAAGT 59.575 47.619 0.00 0.00 37.46 3.16
251 252 2.205022 TGGAATGTCCTGGCTTCAAG 57.795 50.000 0.00 0.00 37.46 3.02
252 253 2.517959 CTTGGAATGTCCTGGCTTCAA 58.482 47.619 0.00 0.00 37.46 2.69
253 254 1.887956 GCTTGGAATGTCCTGGCTTCA 60.888 52.381 0.00 0.00 37.46 3.02
254 255 0.813821 GCTTGGAATGTCCTGGCTTC 59.186 55.000 0.00 0.00 37.46 3.86
255 256 0.613012 GGCTTGGAATGTCCTGGCTT 60.613 55.000 10.25 0.00 37.46 4.35
256 257 1.000396 GGCTTGGAATGTCCTGGCT 60.000 57.895 10.25 0.00 37.46 4.75
257 258 1.304381 TGGCTTGGAATGTCCTGGC 60.304 57.895 0.00 2.33 37.46 4.85
258 259 0.038744 ACTGGCTTGGAATGTCCTGG 59.961 55.000 0.00 0.00 37.46 4.45
259 260 1.171308 CACTGGCTTGGAATGTCCTG 58.829 55.000 0.00 0.00 37.46 3.86
260 261 0.038744 CCACTGGCTTGGAATGTCCT 59.961 55.000 0.00 0.00 39.24 3.85
261 262 0.967380 CCCACTGGCTTGGAATGTCC 60.967 60.000 7.24 0.00 39.24 4.02
262 263 2.571548 CCCACTGGCTTGGAATGTC 58.428 57.895 7.24 0.00 39.24 3.06
263 264 4.850193 CCCACTGGCTTGGAATGT 57.150 55.556 7.24 0.00 39.24 2.71
273 274 1.679977 CCAAGGTGATGCCCACTGG 60.680 63.158 6.34 3.98 45.03 4.00
274 275 0.540365 AACCAAGGTGATGCCCACTG 60.540 55.000 6.34 0.00 45.03 3.66
275 276 0.540365 CAACCAAGGTGATGCCCACT 60.540 55.000 6.34 0.00 45.03 4.00
276 277 1.535204 CCAACCAAGGTGATGCCCAC 61.535 60.000 0.00 0.00 44.95 4.61
277 278 1.228831 CCAACCAAGGTGATGCCCA 60.229 57.895 0.00 0.00 38.26 5.36
278 279 2.649129 GCCAACCAAGGTGATGCCC 61.649 63.158 0.00 0.00 38.26 5.36
279 280 2.649129 GGCCAACCAAGGTGATGCC 61.649 63.158 0.00 10.08 35.26 4.40
280 281 2.973082 GGCCAACCAAGGTGATGC 59.027 61.111 0.00 0.00 35.26 3.91
281 282 0.322098 TACGGCCAACCAAGGTGATG 60.322 55.000 2.24 0.00 34.57 3.07
282 283 0.623723 ATACGGCCAACCAAGGTGAT 59.376 50.000 2.24 0.00 34.57 3.06
315 316 0.486879 TTTGGGCCCATTTCTGTCCT 59.513 50.000 29.23 0.00 0.00 3.85
320 321 0.486879 TCCTGTTTGGGCCCATTTCT 59.513 50.000 29.23 0.00 36.20 2.52
324 325 0.615544 CACATCCTGTTTGGGCCCAT 60.616 55.000 29.23 5.39 36.20 4.00
325 326 1.228831 CACATCCTGTTTGGGCCCA 60.229 57.895 24.45 24.45 36.20 5.36
334 335 1.210204 ACCTGGATGCCACATCCTGT 61.210 55.000 23.33 17.92 38.95 4.00
340 341 3.578286 TGCCACCTGGATGCCACA 61.578 61.111 0.00 0.00 37.39 4.17
361 362 1.278127 GTACTAAGCCTCAGCCACCAA 59.722 52.381 0.00 0.00 41.25 3.67
363 364 0.902531 TGTACTAAGCCTCAGCCACC 59.097 55.000 0.00 0.00 41.25 4.61
369 370 3.954904 GAGTCTGGATGTACTAAGCCTCA 59.045 47.826 0.00 0.00 0.00 3.86
374 375 4.023980 TGGTGGAGTCTGGATGTACTAAG 58.976 47.826 0.00 0.00 0.00 2.18
383 384 0.757561 TCGTTGTGGTGGAGTCTGGA 60.758 55.000 0.00 0.00 0.00 3.86
384 385 0.600255 GTCGTTGTGGTGGAGTCTGG 60.600 60.000 0.00 0.00 0.00 3.86
385 386 0.104120 TGTCGTTGTGGTGGAGTCTG 59.896 55.000 0.00 0.00 0.00 3.51
386 387 1.048601 ATGTCGTTGTGGTGGAGTCT 58.951 50.000 0.00 0.00 0.00 3.24
387 388 1.148310 CATGTCGTTGTGGTGGAGTC 58.852 55.000 0.00 0.00 0.00 3.36
388 389 0.884704 GCATGTCGTTGTGGTGGAGT 60.885 55.000 0.00 0.00 0.00 3.85
389 390 0.603707 AGCATGTCGTTGTGGTGGAG 60.604 55.000 0.00 0.00 0.00 3.86
390 391 0.682292 TAGCATGTCGTTGTGGTGGA 59.318 50.000 0.00 0.00 0.00 4.02
391 392 1.464608 CTTAGCATGTCGTTGTGGTGG 59.535 52.381 0.00 0.00 0.00 4.61
392 393 2.412870 TCTTAGCATGTCGTTGTGGTG 58.587 47.619 0.00 0.00 0.00 4.17
393 394 2.831685 TCTTAGCATGTCGTTGTGGT 57.168 45.000 0.00 0.00 0.00 4.16
398 399 3.806521 GCATCTCATCTTAGCATGTCGTT 59.193 43.478 0.00 0.00 0.00 3.85
399 400 3.181472 TGCATCTCATCTTAGCATGTCGT 60.181 43.478 0.00 0.00 0.00 4.34
415 416 6.785337 TGATTGATCTTTTTCCATGCATCT 57.215 33.333 0.00 0.00 0.00 2.90
416 417 7.201582 GGTTTGATTGATCTTTTTCCATGCATC 60.202 37.037 0.00 0.00 0.00 3.91
417 418 6.596497 GGTTTGATTGATCTTTTTCCATGCAT 59.404 34.615 0.00 0.00 0.00 3.96
418 419 5.933463 GGTTTGATTGATCTTTTTCCATGCA 59.067 36.000 0.00 0.00 0.00 3.96
419 420 5.933463 TGGTTTGATTGATCTTTTTCCATGC 59.067 36.000 0.00 0.00 0.00 4.06
429 430 6.636705 CATGGTTGAATGGTTTGATTGATCT 58.363 36.000 0.00 0.00 0.00 2.75
430 431 5.292589 GCATGGTTGAATGGTTTGATTGATC 59.707 40.000 0.00 0.00 0.00 2.92
431 432 5.180271 GCATGGTTGAATGGTTTGATTGAT 58.820 37.500 0.00 0.00 0.00 2.57
432 433 4.040095 TGCATGGTTGAATGGTTTGATTGA 59.960 37.500 0.00 0.00 0.00 2.57
433 434 4.316645 TGCATGGTTGAATGGTTTGATTG 58.683 39.130 0.00 0.00 0.00 2.67
448 449 6.434028 AGTGTAATAGTTTTGACATGCATGGT 59.566 34.615 29.41 15.59 0.00 3.55
465 466 4.458397 CAGACGGAGGGAGTAGTGTAATA 58.542 47.826 0.00 0.00 0.00 0.98
475 476 2.362717 GAGTATTTCCAGACGGAGGGAG 59.637 54.545 0.00 0.00 44.10 4.30
476 477 2.385803 GAGTATTTCCAGACGGAGGGA 58.614 52.381 0.00 0.00 44.10 4.20
477 478 1.067212 CGAGTATTTCCAGACGGAGGG 59.933 57.143 0.00 0.00 44.10 4.30
479 480 2.422479 TGACGAGTATTTCCAGACGGAG 59.578 50.000 0.00 0.00 44.10 4.63
485 497 6.371548 TCCATTTCTTTGACGAGTATTTCCAG 59.628 38.462 0.00 0.00 0.00 3.86
487 499 6.737254 TCCATTTCTTTGACGAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
489 501 7.687941 ACATCCATTTCTTTGACGAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
492 504 7.327975 ACATACATCCATTTCTTTGACGAGTA 58.672 34.615 0.00 0.00 0.00 2.59
493 505 6.173339 ACATACATCCATTTCTTTGACGAGT 58.827 36.000 0.00 0.00 0.00 4.18
497 509 8.492673 TGTCTACATACATCCATTTCTTTGAC 57.507 34.615 0.00 0.00 0.00 3.18
498 510 9.112725 CATGTCTACATACATCCATTTCTTTGA 57.887 33.333 0.00 0.00 38.01 2.69
499 511 8.896744 ACATGTCTACATACATCCATTTCTTTG 58.103 33.333 0.00 0.00 38.01 2.77
502 514 9.466497 AAAACATGTCTACATACATCCATTTCT 57.534 29.630 0.00 0.00 38.01 2.52
506 518 9.905713 AACTAAAACATGTCTACATACATCCAT 57.094 29.630 0.00 0.00 38.01 3.41
535 547 9.618890 CCGATATGGATAAAAATGGATGTATCT 57.381 33.333 0.00 0.00 42.00 1.98
536 548 8.345565 GCCGATATGGATAAAAATGGATGTATC 58.654 37.037 0.00 0.00 42.00 2.24
537 549 7.012327 CGCCGATATGGATAAAAATGGATGTAT 59.988 37.037 0.00 0.00 42.00 2.29
538 550 6.315144 CGCCGATATGGATAAAAATGGATGTA 59.685 38.462 0.00 0.00 42.00 2.29
540 552 5.353956 TCGCCGATATGGATAAAAATGGATG 59.646 40.000 0.00 0.00 42.00 3.51
541 553 5.354234 GTCGCCGATATGGATAAAAATGGAT 59.646 40.000 0.00 0.00 42.00 3.41
542 554 4.693566 GTCGCCGATATGGATAAAAATGGA 59.306 41.667 0.00 0.00 42.00 3.41
543 555 4.454161 TGTCGCCGATATGGATAAAAATGG 59.546 41.667 0.00 0.00 42.00 3.16
544 556 5.605564 TGTCGCCGATATGGATAAAAATG 57.394 39.130 0.00 0.00 42.00 2.32
545 557 5.763204 ACTTGTCGCCGATATGGATAAAAAT 59.237 36.000 0.00 0.00 42.00 1.82
546 558 5.120399 ACTTGTCGCCGATATGGATAAAAA 58.880 37.500 0.00 0.00 42.00 1.94
548 560 4.330944 ACTTGTCGCCGATATGGATAAA 57.669 40.909 0.00 0.00 42.00 1.40
549 561 5.456548 TTACTTGTCGCCGATATGGATAA 57.543 39.130 0.00 0.00 42.00 1.75
550 562 5.654603 ATTACTTGTCGCCGATATGGATA 57.345 39.130 0.00 0.00 42.00 2.59
551 563 4.537135 ATTACTTGTCGCCGATATGGAT 57.463 40.909 0.00 0.00 42.00 3.41
552 564 4.304110 GAATTACTTGTCGCCGATATGGA 58.696 43.478 0.00 0.00 42.00 3.41
554 566 3.121279 CGGAATTACTTGTCGCCGATATG 59.879 47.826 0.00 0.00 41.11 1.78
556 568 2.544277 CCGGAATTACTTGTCGCCGATA 60.544 50.000 0.00 0.00 41.11 2.92
557 569 1.567504 CGGAATTACTTGTCGCCGAT 58.432 50.000 0.00 0.00 41.11 4.18
561 573 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
563 575 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
564 576 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
565 577 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
566 578 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
567 579 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
569 581 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
570 582 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
571 583 0.754587 GTACTCCCTCCGTCCGGAAT 60.755 60.000 5.23 0.00 44.66 3.01
572 584 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
574 586 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
576 588 2.134789 TACAAGTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
577 589 3.067883 GGAATACAAGTACTCCCTCCGTC 59.932 52.174 0.00 0.00 0.00 4.79
578 590 3.029570 GGAATACAAGTACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
579 591 3.028850 TGGAATACAAGTACTCCCTCCG 58.971 50.000 5.38 0.00 30.83 4.63
580 592 3.773119 TGTGGAATACAAGTACTCCCTCC 59.227 47.826 5.38 0.00 36.06 4.30
581 593 5.416271 TTGTGGAATACAAGTACTCCCTC 57.584 43.478 5.38 0.58 44.07 4.30
662 1606 6.073873 CGCATGTTGTTGTGGAAATTATTTGT 60.074 34.615 0.00 0.00 0.00 2.83
676 1620 3.873361 AGATGATACTCCGCATGTTGTTG 59.127 43.478 0.00 0.00 0.00 3.33
677 1621 4.142609 AGATGATACTCCGCATGTTGTT 57.857 40.909 0.00 0.00 0.00 2.83
683 1627 3.821600 ACGAACTAGATGATACTCCGCAT 59.178 43.478 0.00 0.00 0.00 4.73
686 1630 7.861372 ACATAAAACGAACTAGATGATACTCCG 59.139 37.037 0.00 0.00 0.00 4.63
705 1649 5.721876 AGACAACAAACGACGACATAAAA 57.278 34.783 0.00 0.00 0.00 1.52
729 1673 4.074970 ACCTCAATGTGAATCTCAACACC 58.925 43.478 0.00 0.00 36.35 4.16
782 1727 9.823647 AGGATGTCTTAGATGTACTTATGTTTG 57.176 33.333 0.00 0.00 0.00 2.93
785 1730 7.785028 TCCAGGATGTCTTAGATGTACTTATGT 59.215 37.037 0.00 0.00 0.00 2.29
789 1734 7.496346 TTTCCAGGATGTCTTAGATGTACTT 57.504 36.000 0.00 0.00 0.00 2.24
815 1760 8.766151 GTTATAGATACTTTGAGTTGGCTTAGC 58.234 37.037 0.00 0.00 0.00 3.09
909 1930 2.554032 CTCAAAATTGAGCGGGTTGAGT 59.446 45.455 10.00 0.00 46.97 3.41
917 1938 4.916943 AAGGCACTCCTCAAAATTGAGCG 61.917 47.826 16.02 11.70 46.38 5.03
974 1995 0.912486 GGGCTGAGGGTCAATGTAGT 59.088 55.000 0.00 0.00 0.00 2.73
980 2001 1.685224 GACATGGGCTGAGGGTCAA 59.315 57.895 0.00 0.00 0.00 3.18
989 2010 1.215423 GAATGGTTAGGGACATGGGCT 59.785 52.381 0.00 0.00 0.00 5.19
1021 2042 1.002087 AGAGGAAATGAAACTCGCGGT 59.998 47.619 6.13 0.00 0.00 5.68
1026 2047 3.855858 AGCTCGAGAGGAAATGAAACTC 58.144 45.455 18.75 0.00 0.00 3.01
1028 2049 3.616379 CAGAGCTCGAGAGGAAATGAAAC 59.384 47.826 18.75 0.00 0.00 2.78
1029 2050 3.368843 CCAGAGCTCGAGAGGAAATGAAA 60.369 47.826 18.75 0.00 0.00 2.69
1032 2053 1.480137 ACCAGAGCTCGAGAGGAAATG 59.520 52.381 18.75 5.15 0.00 2.32
1033 2054 1.480137 CACCAGAGCTCGAGAGGAAAT 59.520 52.381 18.75 0.00 0.00 2.17
1034 2055 0.891373 CACCAGAGCTCGAGAGGAAA 59.109 55.000 18.75 0.00 0.00 3.13
1035 2056 0.967887 CCACCAGAGCTCGAGAGGAA 60.968 60.000 18.75 0.00 0.00 3.36
1056 2078 2.808315 CGGCTAGAGGTCGCACAT 59.192 61.111 0.00 0.00 35.85 3.21
1092 2114 1.067915 ACATTTTGGCCGTTTCGATGG 60.068 47.619 0.00 0.00 0.00 3.51
1094 2116 3.378911 AAACATTTTGGCCGTTTCGAT 57.621 38.095 0.00 0.00 0.00 3.59
1095 2117 2.873133 AAACATTTTGGCCGTTTCGA 57.127 40.000 0.00 0.00 0.00 3.71
1096 2118 3.935027 AAAAACATTTTGGCCGTTTCG 57.065 38.095 6.22 0.00 31.86 3.46
1178 2216 9.848710 GCCTACTATCCTAAATTTTTAACTCCT 57.151 33.333 0.00 0.00 0.00 3.69
1211 2534 8.246871 CCTCACTATTTCTTTTTCCCTTTCATC 58.753 37.037 0.00 0.00 0.00 2.92
1216 2539 5.393866 TGCCTCACTATTTCTTTTTCCCTT 58.606 37.500 0.00 0.00 0.00 3.95
1240 2864 3.955650 AGCTTCTTTTGTCGGCTAGTA 57.044 42.857 0.00 0.00 0.00 1.82
1262 2886 3.265070 CAGACTTTGCTCTTTGTCTGC 57.735 47.619 8.68 0.00 46.09 4.26
1311 2950 9.467258 GGGACAACCTTTACTTTTTGTTTATAC 57.533 33.333 0.00 0.00 32.34 1.47
1343 2991 5.378332 TCTACTAGAGATACAAGAGGGCAC 58.622 45.833 0.00 0.00 0.00 5.01
1360 3008 9.868160 TGAGTTGATGGATCTAGAATTCTACTA 57.132 33.333 11.24 3.41 0.00 1.82
1361 3009 8.774546 TGAGTTGATGGATCTAGAATTCTACT 57.225 34.615 11.24 5.57 0.00 2.57
1362 3010 9.474920 CTTGAGTTGATGGATCTAGAATTCTAC 57.525 37.037 11.24 2.75 0.00 2.59
1363 3011 9.206690 ACTTGAGTTGATGGATCTAGAATTCTA 57.793 33.333 14.42 14.42 0.00 2.10
1364 3012 8.088463 ACTTGAGTTGATGGATCTAGAATTCT 57.912 34.615 13.56 13.56 0.00 2.40
1365 3013 9.474920 CTACTTGAGTTGATGGATCTAGAATTC 57.525 37.037 0.00 0.00 0.00 2.17
1366 3014 7.930865 GCTACTTGAGTTGATGGATCTAGAATT 59.069 37.037 0.00 0.00 0.00 2.17
1367 3015 7.441017 GCTACTTGAGTTGATGGATCTAGAAT 58.559 38.462 0.00 0.00 0.00 2.40
1368 3016 6.460261 CGCTACTTGAGTTGATGGATCTAGAA 60.460 42.308 0.00 0.00 0.00 2.10
1386 3034 0.462759 GGCTGGATCAAGCGCTACTT 60.463 55.000 12.05 0.00 44.52 2.24
1388 3036 2.240500 CGGCTGGATCAAGCGCTAC 61.241 63.158 12.05 2.51 44.52 3.58
1390 3038 3.729965 CTCGGCTGGATCAAGCGCT 62.730 63.158 16.01 2.64 44.52 5.92
1405 3060 2.109517 CTCCATGGATCCCCTGCTCG 62.110 65.000 16.63 0.00 0.00 5.03
1433 3100 3.691744 CTCCAGCTCGCACTCGTCC 62.692 68.421 0.00 0.00 36.96 4.79
1461 3128 1.469308 CTCGAGGTCTACAGTGGACAC 59.531 57.143 18.02 10.47 35.61 3.67
1464 3131 0.680280 GCCTCGAGGTCTACAGTGGA 60.680 60.000 31.43 0.00 37.57 4.02
1643 3310 1.741770 CGTGCCACAGAAGTAGCCC 60.742 63.158 0.00 0.00 30.87 5.19
1679 3346 1.166531 AGTTGAGCTGTTTGACGGGC 61.167 55.000 0.00 0.00 0.00 6.13
1744 3414 2.421424 GCACCATCTGGACAAGAATGAC 59.579 50.000 2.55 0.00 38.79 3.06
1753 3423 1.448540 CCGTCAGCACCATCTGGAC 60.449 63.158 2.55 0.00 38.94 4.02
1928 3598 4.802051 GCCCGGAAGATGCTGCCA 62.802 66.667 0.73 0.00 0.00 4.92
2057 3733 1.074727 CACCACCTACCACCATGGAAA 59.925 52.381 21.47 0.00 40.96 3.13
2061 3737 2.286365 AAACACCACCTACCACCATG 57.714 50.000 0.00 0.00 0.00 3.66
2076 3752 1.524165 CCACCGGACGGACAAAACA 60.524 57.895 18.80 0.00 38.96 2.83
2077 3753 1.226030 CTCCACCGGACGGACAAAAC 61.226 60.000 18.80 0.00 38.96 2.43
2079 3755 2.738480 CTCCACCGGACGGACAAA 59.262 61.111 18.80 0.00 38.96 2.83
2080 3756 3.307906 CCTCCACCGGACGGACAA 61.308 66.667 18.80 0.87 38.96 3.18
2184 3861 2.603473 TGTCCACCTCCGTCCAGG 60.603 66.667 0.00 0.00 42.97 4.45
2282 3959 1.066358 GTAGCTGAACCCCCTGTACAC 60.066 57.143 0.00 0.00 0.00 2.90
2292 3969 1.672145 GGAACTCACGGTAGCTGAACC 60.672 57.143 0.00 0.00 36.08 3.62
2384 4064 6.930667 AAAAATGAATGCTTATGATTGGGC 57.069 33.333 0.00 0.00 0.00 5.36
2404 4084 9.927668 ACAAAATGACAAGAAGAAGAAGAAAAA 57.072 25.926 0.00 0.00 0.00 1.94
2407 4087 9.396022 AGTACAAAATGACAAGAAGAAGAAGAA 57.604 29.630 0.00 0.00 0.00 2.52
2408 4088 8.964476 AGTACAAAATGACAAGAAGAAGAAGA 57.036 30.769 0.00 0.00 0.00 2.87
2409 4089 8.286097 GGAGTACAAAATGACAAGAAGAAGAAG 58.714 37.037 0.00 0.00 0.00 2.85
2410 4090 7.993183 AGGAGTACAAAATGACAAGAAGAAGAA 59.007 33.333 0.00 0.00 0.00 2.52
2411 4091 7.509546 AGGAGTACAAAATGACAAGAAGAAGA 58.490 34.615 0.00 0.00 0.00 2.87
2412 4092 7.736447 AGGAGTACAAAATGACAAGAAGAAG 57.264 36.000 0.00 0.00 0.00 2.85
2420 4100 9.733556 ACAAACATATAGGAGTACAAAATGACA 57.266 29.630 0.00 0.00 0.00 3.58
2424 4104 9.042008 CGCTACAAACATATAGGAGTACAAAAT 57.958 33.333 0.00 0.00 0.00 1.82
2425 4105 7.493320 CCGCTACAAACATATAGGAGTACAAAA 59.507 37.037 0.00 0.00 0.00 2.44
2426 4106 6.982141 CCGCTACAAACATATAGGAGTACAAA 59.018 38.462 0.00 0.00 0.00 2.83
2427 4107 6.461927 CCCGCTACAAACATATAGGAGTACAA 60.462 42.308 0.00 0.00 0.00 2.41
2428 4108 5.010314 CCCGCTACAAACATATAGGAGTACA 59.990 44.000 0.00 0.00 0.00 2.90
2429 4109 5.467705 CCCGCTACAAACATATAGGAGTAC 58.532 45.833 0.00 0.00 0.00 2.73
2430 4110 4.021719 GCCCGCTACAAACATATAGGAGTA 60.022 45.833 0.00 0.00 0.00 2.59
2431 4111 3.244112 GCCCGCTACAAACATATAGGAGT 60.244 47.826 0.00 0.00 0.00 3.85
2432 4112 3.326747 GCCCGCTACAAACATATAGGAG 58.673 50.000 0.00 0.00 0.00 3.69
2433 4113 2.038033 GGCCCGCTACAAACATATAGGA 59.962 50.000 0.00 0.00 0.00 2.94
2434 4114 2.423577 GGCCCGCTACAAACATATAGG 58.576 52.381 0.00 0.00 0.00 2.57
2435 4115 2.066262 CGGCCCGCTACAAACATATAG 58.934 52.381 0.00 0.00 0.00 1.31
2436 4116 1.687660 TCGGCCCGCTACAAACATATA 59.312 47.619 0.00 0.00 0.00 0.86
2437 4117 0.466543 TCGGCCCGCTACAAACATAT 59.533 50.000 0.00 0.00 0.00 1.78
2438 4118 0.179094 CTCGGCCCGCTACAAACATA 60.179 55.000 0.00 0.00 0.00 2.29
2439 4119 1.449601 CTCGGCCCGCTACAAACAT 60.450 57.895 0.00 0.00 0.00 2.71
2440 4120 2.047655 CTCGGCCCGCTACAAACA 60.048 61.111 0.00 0.00 0.00 2.83
2441 4121 0.952010 TTTCTCGGCCCGCTACAAAC 60.952 55.000 0.00 0.00 0.00 2.93
2442 4122 0.250381 TTTTCTCGGCCCGCTACAAA 60.250 50.000 0.00 0.00 0.00 2.83
2443 4123 0.952010 GTTTTCTCGGCCCGCTACAA 60.952 55.000 0.00 0.00 0.00 2.41
2444 4124 1.375013 GTTTTCTCGGCCCGCTACA 60.375 57.895 0.00 0.00 0.00 2.74
2445 4125 0.672711 AAGTTTTCTCGGCCCGCTAC 60.673 55.000 0.00 0.00 0.00 3.58
2446 4126 0.035739 AAAGTTTTCTCGGCCCGCTA 59.964 50.000 0.00 0.00 0.00 4.26
2447 4127 0.035739 TAAAGTTTTCTCGGCCCGCT 59.964 50.000 0.00 0.00 0.00 5.52
2448 4128 0.876399 TTAAAGTTTTCTCGGCCCGC 59.124 50.000 0.00 0.00 0.00 6.13
2449 4129 2.096980 GGATTAAAGTTTTCTCGGCCCG 59.903 50.000 0.00 0.00 0.00 6.13
2450 4130 3.086282 TGGATTAAAGTTTTCTCGGCCC 58.914 45.455 0.00 0.00 0.00 5.80
2451 4131 4.776795 TTGGATTAAAGTTTTCTCGGCC 57.223 40.909 0.00 0.00 0.00 6.13
2452 4132 6.866248 TGAATTTGGATTAAAGTTTTCTCGGC 59.134 34.615 0.00 0.00 0.00 5.54
2453 4133 8.986477 ATGAATTTGGATTAAAGTTTTCTCGG 57.014 30.769 0.00 0.00 0.00 4.63
2456 4136 9.002600 GGCAATGAATTTGGATTAAAGTTTTCT 57.997 29.630 0.00 0.00 35.75 2.52
2457 4137 8.782144 TGGCAATGAATTTGGATTAAAGTTTTC 58.218 29.630 0.00 0.00 35.75 2.29
2458 4138 8.688747 TGGCAATGAATTTGGATTAAAGTTTT 57.311 26.923 0.00 0.00 35.75 2.43
2459 4139 8.688747 TTGGCAATGAATTTGGATTAAAGTTT 57.311 26.923 0.00 0.00 35.75 2.66
2721 4401 4.631813 CGGTTTCCCTTCTATCTTCACTTG 59.368 45.833 0.00 0.00 0.00 3.16
2990 4670 2.234300 TTCCTCGACTGTTTGACACC 57.766 50.000 0.00 0.00 0.00 4.16
3290 4974 8.445361 TCAACTCTAGGGATTTTACCTAAAGT 57.555 34.615 0.00 0.00 42.27 2.66
3327 5011 4.120792 TGCAACTTTCAATGCTTTGTGA 57.879 36.364 11.67 0.61 42.97 3.58
3397 5081 5.333299 TCTTAAAAGACGTATGGCTGCTA 57.667 39.130 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.