Multiple sequence alignment - TraesCS3A01G535800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G535800 chr3A 100.000 2539 0 0 1 2539 747075871 747073333 0.000000e+00 4689.0
1 TraesCS3A01G535800 chr3A 95.810 1981 65 6 570 2539 735555341 735557314 0.000000e+00 3182.0
2 TraesCS3A01G535800 chr3A 95.530 1991 73 6 560 2539 722406056 722404071 0.000000e+00 3169.0
3 TraesCS3A01G535800 chr3A 95.000 1980 64 4 570 2539 696312540 696310586 0.000000e+00 3075.0
4 TraesCS3A01G535800 chr3A 94.595 1147 35 7 570 1692 719846459 719847602 0.000000e+00 1749.0
5 TraesCS3A01G535800 chr7A 96.214 1981 59 6 570 2539 689996369 689994394 0.000000e+00 3229.0
6 TraesCS3A01G535800 chr7A 96.162 1980 62 3 570 2539 150203038 150201063 0.000000e+00 3223.0
7 TraesCS3A01G535800 chr7A 94.679 2011 63 13 570 2539 14473099 14471092 0.000000e+00 3081.0
8 TraesCS3A01G535800 chr7A 94.420 1147 39 6 570 1692 18189930 18191075 0.000000e+00 1740.0
9 TraesCS3A01G535800 chr4A 96.212 1980 55 5 570 2539 29029002 29030971 0.000000e+00 3223.0
10 TraesCS3A01G535800 chr4A 95.808 1980 67 4 570 2539 626934246 626932273 0.000000e+00 3182.0
11 TraesCS3A01G535800 chr6A 95.879 1990 67 5 560 2539 200078190 200080174 0.000000e+00 3206.0
12 TraesCS3A01G535800 chr6A 95.917 1984 65 2 572 2539 484400741 484402724 0.000000e+00 3201.0
13 TraesCS3A01G535800 chr6A 95.758 1980 58 7 570 2539 203520912 203518949 0.000000e+00 3168.0
14 TraesCS3A01G535800 chr6B 95.911 1981 64 5 570 2539 660437743 660435769 0.000000e+00 3193.0
15 TraesCS3A01G535800 chr5A 95.582 1992 59 9 570 2539 563443930 563445914 0.000000e+00 3164.0
16 TraesCS3A01G535800 chr2A 96.358 1620 45 5 931 2539 744582359 744583975 0.000000e+00 2652.0
17 TraesCS3A01G535800 chr2A 94.271 1152 39 6 565 1692 764220185 764221333 0.000000e+00 1736.0
18 TraesCS3A01G535800 chr2D 86.256 1397 129 37 1084 2433 551247277 551248657 0.000000e+00 1458.0
19 TraesCS3A01G535800 chr2B 83.127 1535 142 49 966 2433 797444433 797442949 0.000000e+00 1291.0
20 TraesCS3A01G535800 chr5B 87.642 1060 76 20 1169 2183 700746555 700747604 0.000000e+00 1181.0
21 TraesCS3A01G535800 chr3D 93.271 431 22 5 140 569 612528723 612529147 1.660000e-176 628.0
22 TraesCS3A01G535800 chr3D 95.745 47 2 0 1 47 612528680 612528726 2.710000e-10 76.8
23 TraesCS3A01G535800 chr3B 93.277 238 15 1 2 238 826326016 826326253 1.450000e-92 350.0
24 TraesCS3A01G535800 chr3B 95.588 68 3 0 1 68 826324264 826324331 2.670000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G535800 chr3A 747073333 747075871 2538 True 4689 4689 100.0000 1 2539 1 chr3A.!!$R3 2538
1 TraesCS3A01G535800 chr3A 735555341 735557314 1973 False 3182 3182 95.8100 570 2539 1 chr3A.!!$F2 1969
2 TraesCS3A01G535800 chr3A 722404071 722406056 1985 True 3169 3169 95.5300 560 2539 1 chr3A.!!$R2 1979
3 TraesCS3A01G535800 chr3A 696310586 696312540 1954 True 3075 3075 95.0000 570 2539 1 chr3A.!!$R1 1969
4 TraesCS3A01G535800 chr3A 719846459 719847602 1143 False 1749 1749 94.5950 570 1692 1 chr3A.!!$F1 1122
5 TraesCS3A01G535800 chr7A 689994394 689996369 1975 True 3229 3229 96.2140 570 2539 1 chr7A.!!$R3 1969
6 TraesCS3A01G535800 chr7A 150201063 150203038 1975 True 3223 3223 96.1620 570 2539 1 chr7A.!!$R2 1969
7 TraesCS3A01G535800 chr7A 14471092 14473099 2007 True 3081 3081 94.6790 570 2539 1 chr7A.!!$R1 1969
8 TraesCS3A01G535800 chr7A 18189930 18191075 1145 False 1740 1740 94.4200 570 1692 1 chr7A.!!$F1 1122
9 TraesCS3A01G535800 chr4A 29029002 29030971 1969 False 3223 3223 96.2120 570 2539 1 chr4A.!!$F1 1969
10 TraesCS3A01G535800 chr4A 626932273 626934246 1973 True 3182 3182 95.8080 570 2539 1 chr4A.!!$R1 1969
11 TraesCS3A01G535800 chr6A 200078190 200080174 1984 False 3206 3206 95.8790 560 2539 1 chr6A.!!$F1 1979
12 TraesCS3A01G535800 chr6A 484400741 484402724 1983 False 3201 3201 95.9170 572 2539 1 chr6A.!!$F2 1967
13 TraesCS3A01G535800 chr6A 203518949 203520912 1963 True 3168 3168 95.7580 570 2539 1 chr6A.!!$R1 1969
14 TraesCS3A01G535800 chr6B 660435769 660437743 1974 True 3193 3193 95.9110 570 2539 1 chr6B.!!$R1 1969
15 TraesCS3A01G535800 chr5A 563443930 563445914 1984 False 3164 3164 95.5820 570 2539 1 chr5A.!!$F1 1969
16 TraesCS3A01G535800 chr2A 744582359 744583975 1616 False 2652 2652 96.3580 931 2539 1 chr2A.!!$F1 1608
17 TraesCS3A01G535800 chr2A 764220185 764221333 1148 False 1736 1736 94.2710 565 1692 1 chr2A.!!$F2 1127
18 TraesCS3A01G535800 chr2D 551247277 551248657 1380 False 1458 1458 86.2560 1084 2433 1 chr2D.!!$F1 1349
19 TraesCS3A01G535800 chr2B 797442949 797444433 1484 True 1291 1291 83.1270 966 2433 1 chr2B.!!$R1 1467
20 TraesCS3A01G535800 chr5B 700746555 700747604 1049 False 1181 1181 87.6420 1169 2183 1 chr5B.!!$F1 1014
21 TraesCS3A01G535800 chr3B 826324264 826326253 1989 False 230 350 94.4325 1 238 2 chr3B.!!$F1 237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.034186 TCCATGGCACTGAACCATCC 60.034 55.0 6.96 0.0 44.85 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2692 0.746063 CTCTACCAGAGCTGAGGCAG 59.254 60.0 0.0 0.0 41.7 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.806818 TCTAGCTAGCGATCTACCTACATT 58.193 41.667 16.35 0.00 0.00 2.71
62 63 0.455410 TGTCTTGTGTTGGTTGCAGC 59.545 50.000 0.00 0.00 0.00 5.25
68 69 2.374184 TGTGTTGGTTGCAGCTAAGTT 58.626 42.857 0.00 0.00 0.00 2.66
69 70 3.546724 TGTGTTGGTTGCAGCTAAGTTA 58.453 40.909 0.00 0.00 0.00 2.24
71 72 4.023279 TGTGTTGGTTGCAGCTAAGTTATG 60.023 41.667 0.00 0.00 0.00 1.90
72 73 4.023193 GTGTTGGTTGCAGCTAAGTTATGT 60.023 41.667 0.00 0.00 0.00 2.29
73 74 4.215399 TGTTGGTTGCAGCTAAGTTATGTC 59.785 41.667 0.00 0.00 0.00 3.06
74 75 3.343617 TGGTTGCAGCTAAGTTATGTCC 58.656 45.455 0.00 0.00 0.00 4.02
76 77 3.947834 GGTTGCAGCTAAGTTATGTCCAT 59.052 43.478 0.00 0.00 0.00 3.41
78 79 4.760530 TGCAGCTAAGTTATGTCCATCT 57.239 40.909 0.00 0.00 0.00 2.90
79 80 5.869649 TGCAGCTAAGTTATGTCCATCTA 57.130 39.130 0.00 0.00 0.00 1.98
80 81 6.425210 TGCAGCTAAGTTATGTCCATCTAT 57.575 37.500 0.00 0.00 0.00 1.98
83 84 7.102346 GCAGCTAAGTTATGTCCATCTATCAT 58.898 38.462 0.00 0.00 0.00 2.45
91 92 8.712103 AGTTATGTCCATCTATCATATCCATGG 58.288 37.037 4.97 4.97 36.15 3.66
92 93 5.363562 TGTCCATCTATCATATCCATGGC 57.636 43.478 6.96 0.00 34.99 4.40
93 94 4.784300 TGTCCATCTATCATATCCATGGCA 59.216 41.667 6.96 0.00 34.99 4.92
94 95 5.121811 GTCCATCTATCATATCCATGGCAC 58.878 45.833 6.96 0.00 34.99 5.01
95 96 5.034878 TCCATCTATCATATCCATGGCACT 58.965 41.667 6.96 0.00 34.99 4.40
96 97 5.104652 TCCATCTATCATATCCATGGCACTG 60.105 44.000 6.96 3.86 34.99 3.66
97 98 5.104652 CCATCTATCATATCCATGGCACTGA 60.105 44.000 6.96 9.52 32.61 3.41
98 99 6.412214 CATCTATCATATCCATGGCACTGAA 58.588 40.000 6.96 0.00 32.61 3.02
99 100 5.798132 TCTATCATATCCATGGCACTGAAC 58.202 41.667 6.96 0.00 32.61 3.18
100 101 3.213206 TCATATCCATGGCACTGAACC 57.787 47.619 6.96 0.00 32.61 3.62
101 102 2.509131 TCATATCCATGGCACTGAACCA 59.491 45.455 6.96 0.00 42.61 3.67
103 104 2.062971 ATCCATGGCACTGAACCATC 57.937 50.000 6.96 0.00 44.85 3.51
104 105 0.034186 TCCATGGCACTGAACCATCC 60.034 55.000 6.96 0.00 44.85 3.51
105 106 0.323633 CCATGGCACTGAACCATCCA 60.324 55.000 0.00 0.00 44.85 3.41
106 107 1.687054 CCATGGCACTGAACCATCCAT 60.687 52.381 0.00 0.00 44.85 3.41
107 108 2.423231 CCATGGCACTGAACCATCCATA 60.423 50.000 0.00 0.00 44.85 2.74
108 109 3.289836 CATGGCACTGAACCATCCATAA 58.710 45.455 0.00 0.00 44.85 1.90
109 110 3.668141 TGGCACTGAACCATCCATAAT 57.332 42.857 0.00 0.00 30.29 1.28
110 111 3.554934 TGGCACTGAACCATCCATAATC 58.445 45.455 0.00 0.00 30.29 1.75
111 112 2.887152 GGCACTGAACCATCCATAATCC 59.113 50.000 0.00 0.00 0.00 3.01
112 113 3.554934 GCACTGAACCATCCATAATCCA 58.445 45.455 0.00 0.00 0.00 3.41
113 114 4.147321 GCACTGAACCATCCATAATCCAT 58.853 43.478 0.00 0.00 0.00 3.41
114 115 5.316167 GCACTGAACCATCCATAATCCATA 58.684 41.667 0.00 0.00 0.00 2.74
115 116 5.948162 GCACTGAACCATCCATAATCCATAT 59.052 40.000 0.00 0.00 0.00 1.78
116 117 7.112122 GCACTGAACCATCCATAATCCATATA 58.888 38.462 0.00 0.00 0.00 0.86
117 118 7.776969 GCACTGAACCATCCATAATCCATATAT 59.223 37.037 0.00 0.00 0.00 0.86
118 119 9.334947 CACTGAACCATCCATAATCCATATATC 57.665 37.037 0.00 0.00 0.00 1.63
119 120 9.061252 ACTGAACCATCCATAATCCATATATCA 57.939 33.333 0.00 0.00 0.00 2.15
120 121 9.910267 CTGAACCATCCATAATCCATATATCAA 57.090 33.333 0.00 0.00 0.00 2.57
150 151 5.189659 AGAGTTATCTATGTCGCTGAACC 57.810 43.478 0.00 0.00 32.54 3.62
151 152 4.645136 AGAGTTATCTATGTCGCTGAACCA 59.355 41.667 0.00 0.00 32.54 3.67
152 153 5.303078 AGAGTTATCTATGTCGCTGAACCAT 59.697 40.000 0.00 0.00 32.54 3.55
153 154 6.490381 AGAGTTATCTATGTCGCTGAACCATA 59.510 38.462 0.00 0.00 32.54 2.74
154 155 7.014326 AGAGTTATCTATGTCGCTGAACCATAA 59.986 37.037 0.00 0.00 32.54 1.90
155 156 7.671302 AGTTATCTATGTCGCTGAACCATAAT 58.329 34.615 0.00 0.00 0.00 1.28
156 157 7.815068 AGTTATCTATGTCGCTGAACCATAATC 59.185 37.037 0.00 0.00 0.00 1.75
157 158 4.883083 TCTATGTCGCTGAACCATAATCC 58.117 43.478 0.00 0.00 0.00 3.01
158 159 3.558931 ATGTCGCTGAACCATAATCCA 57.441 42.857 0.00 0.00 0.00 3.41
159 160 2.627945 TGTCGCTGAACCATAATCCAC 58.372 47.619 0.00 0.00 0.00 4.02
160 161 1.593006 GTCGCTGAACCATAATCCACG 59.407 52.381 0.00 0.00 0.00 4.94
161 162 0.304705 CGCTGAACCATAATCCACGC 59.695 55.000 0.00 0.00 0.00 5.34
162 163 1.378531 GCTGAACCATAATCCACGCA 58.621 50.000 0.00 0.00 0.00 5.24
163 164 1.949525 GCTGAACCATAATCCACGCAT 59.050 47.619 0.00 0.00 0.00 4.73
164 165 2.287188 GCTGAACCATAATCCACGCATG 60.287 50.000 0.00 0.00 0.00 4.06
165 166 2.945008 CTGAACCATAATCCACGCATGT 59.055 45.455 0.00 0.00 0.00 3.21
166 167 4.126437 CTGAACCATAATCCACGCATGTA 58.874 43.478 0.00 0.00 0.00 2.29
167 168 4.713553 TGAACCATAATCCACGCATGTAT 58.286 39.130 0.00 0.00 0.00 2.29
168 169 4.754618 TGAACCATAATCCACGCATGTATC 59.245 41.667 0.00 0.00 0.00 2.24
169 170 4.623932 ACCATAATCCACGCATGTATCT 57.376 40.909 0.00 0.00 0.00 1.98
170 171 5.738619 ACCATAATCCACGCATGTATCTA 57.261 39.130 0.00 0.00 0.00 1.98
171 172 6.299805 ACCATAATCCACGCATGTATCTAT 57.700 37.500 0.00 0.00 0.00 1.98
172 173 6.341316 ACCATAATCCACGCATGTATCTATC 58.659 40.000 0.00 0.00 0.00 2.08
173 174 6.155221 ACCATAATCCACGCATGTATCTATCT 59.845 38.462 0.00 0.00 0.00 1.98
174 175 7.342026 ACCATAATCCACGCATGTATCTATCTA 59.658 37.037 0.00 0.00 0.00 1.98
175 176 8.363390 CCATAATCCACGCATGTATCTATCTAT 58.637 37.037 0.00 0.00 0.00 1.98
176 177 9.189723 CATAATCCACGCATGTATCTATCTATG 57.810 37.037 0.00 0.00 0.00 2.23
177 178 6.782082 ATCCACGCATGTATCTATCTATGT 57.218 37.500 0.00 0.00 0.00 2.29
178 179 6.196079 TCCACGCATGTATCTATCTATGTC 57.804 41.667 0.00 0.00 0.00 3.06
179 180 5.710099 TCCACGCATGTATCTATCTATGTCA 59.290 40.000 0.00 0.00 0.00 3.58
180 181 6.378280 TCCACGCATGTATCTATCTATGTCAT 59.622 38.462 0.00 0.00 0.00 3.06
181 182 6.694844 CCACGCATGTATCTATCTATGTCATC 59.305 42.308 0.00 0.00 0.00 2.92
182 183 7.253422 CACGCATGTATCTATCTATGTCATCA 58.747 38.462 0.00 0.00 0.00 3.07
183 184 7.431668 CACGCATGTATCTATCTATGTCATCAG 59.568 40.741 0.00 0.00 0.00 2.90
184 185 7.121907 ACGCATGTATCTATCTATGTCATCAGT 59.878 37.037 0.00 0.00 0.00 3.41
185 186 8.616076 CGCATGTATCTATCTATGTCATCAGTA 58.384 37.037 0.00 0.00 0.00 2.74
186 187 9.729023 GCATGTATCTATCTATGTCATCAGTAC 57.271 37.037 0.00 0.00 0.00 2.73
189 190 9.674068 TGTATCTATCTATGTCATCAGTACTCC 57.326 37.037 0.00 0.00 0.00 3.85
190 191 9.674068 GTATCTATCTATGTCATCAGTACTCCA 57.326 37.037 0.00 0.00 0.00 3.86
192 193 8.996651 TCTATCTATGTCATCAGTACTCCAAA 57.003 34.615 0.00 0.00 0.00 3.28
193 194 9.421399 TCTATCTATGTCATCAGTACTCCAAAA 57.579 33.333 0.00 0.00 0.00 2.44
194 195 9.689976 CTATCTATGTCATCAGTACTCCAAAAG 57.310 37.037 0.00 0.00 0.00 2.27
195 196 7.482169 TCTATGTCATCAGTACTCCAAAAGT 57.518 36.000 0.00 0.00 42.33 2.66
196 197 8.589701 TCTATGTCATCAGTACTCCAAAAGTA 57.410 34.615 0.00 0.00 39.55 2.24
197 198 9.031537 TCTATGTCATCAGTACTCCAAAAGTAA 57.968 33.333 0.00 0.00 42.11 2.24
198 199 9.307121 CTATGTCATCAGTACTCCAAAAGTAAG 57.693 37.037 0.00 0.00 42.11 2.34
199 200 6.464222 TGTCATCAGTACTCCAAAAGTAAGG 58.536 40.000 0.00 0.00 42.11 2.69
200 201 6.042781 TGTCATCAGTACTCCAAAAGTAAGGT 59.957 38.462 0.00 0.00 42.11 3.50
201 202 6.369065 GTCATCAGTACTCCAAAAGTAAGGTG 59.631 42.308 0.00 0.00 42.11 4.00
202 203 5.881923 TCAGTACTCCAAAAGTAAGGTGT 57.118 39.130 0.00 0.00 42.11 4.16
203 204 5.607477 TCAGTACTCCAAAAGTAAGGTGTG 58.393 41.667 0.00 0.00 42.11 3.82
204 205 5.129815 TCAGTACTCCAAAAGTAAGGTGTGT 59.870 40.000 0.00 0.00 42.11 3.72
205 206 5.820947 CAGTACTCCAAAAGTAAGGTGTGTT 59.179 40.000 0.00 0.00 42.11 3.32
206 207 6.317893 CAGTACTCCAAAAGTAAGGTGTGTTT 59.682 38.462 0.00 0.00 42.11 2.83
207 208 7.496591 CAGTACTCCAAAAGTAAGGTGTGTTTA 59.503 37.037 0.00 0.00 42.11 2.01
208 209 6.937436 ACTCCAAAAGTAAGGTGTGTTTAG 57.063 37.500 0.00 0.00 36.07 1.85
209 210 6.420638 ACTCCAAAAGTAAGGTGTGTTTAGT 58.579 36.000 0.00 0.00 36.07 2.24
210 211 6.317893 ACTCCAAAAGTAAGGTGTGTTTAGTG 59.682 38.462 0.00 0.00 36.07 2.74
211 212 6.416415 TCCAAAAGTAAGGTGTGTTTAGTGA 58.584 36.000 0.00 0.00 0.00 3.41
212 213 7.057894 TCCAAAAGTAAGGTGTGTTTAGTGAT 58.942 34.615 0.00 0.00 0.00 3.06
213 214 7.227910 TCCAAAAGTAAGGTGTGTTTAGTGATC 59.772 37.037 0.00 0.00 0.00 2.92
214 215 7.012894 CCAAAAGTAAGGTGTGTTTAGTGATCA 59.987 37.037 0.00 0.00 0.00 2.92
215 216 8.567948 CAAAAGTAAGGTGTGTTTAGTGATCAT 58.432 33.333 0.00 0.00 0.00 2.45
216 217 8.691661 AAAGTAAGGTGTGTTTAGTGATCATT 57.308 30.769 0.00 0.00 0.00 2.57
217 218 9.787435 AAAGTAAGGTGTGTTTAGTGATCATTA 57.213 29.630 0.00 0.00 0.00 1.90
218 219 9.959721 AAGTAAGGTGTGTTTAGTGATCATTAT 57.040 29.630 0.00 0.00 0.00 1.28
219 220 9.601217 AGTAAGGTGTGTTTAGTGATCATTATC 57.399 33.333 0.00 0.00 0.00 1.75
220 221 9.601217 GTAAGGTGTGTTTAGTGATCATTATCT 57.399 33.333 0.00 0.00 32.93 1.98
221 222 8.498054 AAGGTGTGTTTAGTGATCATTATCTG 57.502 34.615 0.00 0.00 32.93 2.90
222 223 7.624549 AGGTGTGTTTAGTGATCATTATCTGT 58.375 34.615 0.00 0.00 32.93 3.41
223 224 8.103305 AGGTGTGTTTAGTGATCATTATCTGTT 58.897 33.333 0.00 0.00 32.93 3.16
224 225 8.177663 GGTGTGTTTAGTGATCATTATCTGTTG 58.822 37.037 0.00 0.00 32.93 3.33
225 226 8.177663 GTGTGTTTAGTGATCATTATCTGTTGG 58.822 37.037 0.00 0.00 32.93 3.77
226 227 7.882791 TGTGTTTAGTGATCATTATCTGTTGGT 59.117 33.333 0.00 0.00 32.93 3.67
227 228 8.391106 GTGTTTAGTGATCATTATCTGTTGGTC 58.609 37.037 0.00 0.00 32.93 4.02
228 229 8.100164 TGTTTAGTGATCATTATCTGTTGGTCA 58.900 33.333 0.00 0.00 32.93 4.02
229 230 9.113838 GTTTAGTGATCATTATCTGTTGGTCAT 57.886 33.333 0.00 0.00 32.93 3.06
230 231 8.667076 TTAGTGATCATTATCTGTTGGTCATG 57.333 34.615 0.00 0.00 32.93 3.07
231 232 6.656902 AGTGATCATTATCTGTTGGTCATGT 58.343 36.000 0.00 0.00 32.93 3.21
232 233 6.541278 AGTGATCATTATCTGTTGGTCATGTG 59.459 38.462 0.00 0.00 32.93 3.21
233 234 6.539826 GTGATCATTATCTGTTGGTCATGTGA 59.460 38.462 0.00 0.00 32.93 3.58
234 235 7.228108 GTGATCATTATCTGTTGGTCATGTGAT 59.772 37.037 0.00 0.00 32.93 3.06
235 236 7.776500 TGATCATTATCTGTTGGTCATGTGATT 59.224 33.333 0.00 0.00 32.93 2.57
236 237 7.324354 TCATTATCTGTTGGTCATGTGATTG 57.676 36.000 0.00 0.00 0.00 2.67
237 238 6.885918 TCATTATCTGTTGGTCATGTGATTGT 59.114 34.615 0.00 0.00 0.00 2.71
238 239 7.394077 TCATTATCTGTTGGTCATGTGATTGTT 59.606 33.333 0.00 0.00 0.00 2.83
239 240 4.834357 TCTGTTGGTCATGTGATTGTTG 57.166 40.909 0.00 0.00 0.00 3.33
240 241 3.004629 TCTGTTGGTCATGTGATTGTTGC 59.995 43.478 0.00 0.00 0.00 4.17
241 242 2.035704 TGTTGGTCATGTGATTGTTGCC 59.964 45.455 0.00 0.00 0.00 4.52
242 243 1.992538 TGGTCATGTGATTGTTGCCA 58.007 45.000 0.00 0.00 0.00 4.92
243 244 2.527497 TGGTCATGTGATTGTTGCCAT 58.473 42.857 0.00 0.00 0.00 4.40
244 245 2.898612 TGGTCATGTGATTGTTGCCATT 59.101 40.909 0.00 0.00 0.00 3.16
245 246 3.324268 TGGTCATGTGATTGTTGCCATTT 59.676 39.130 0.00 0.00 0.00 2.32
246 247 4.525874 TGGTCATGTGATTGTTGCCATTTA 59.474 37.500 0.00 0.00 0.00 1.40
247 248 5.187381 TGGTCATGTGATTGTTGCCATTTAT 59.813 36.000 0.00 0.00 0.00 1.40
248 249 6.108015 GGTCATGTGATTGTTGCCATTTATT 58.892 36.000 0.00 0.00 0.00 1.40
249 250 6.256321 GGTCATGTGATTGTTGCCATTTATTC 59.744 38.462 0.00 0.00 0.00 1.75
250 251 6.020440 GTCATGTGATTGTTGCCATTTATTCG 60.020 38.462 0.00 0.00 0.00 3.34
251 252 5.384063 TGTGATTGTTGCCATTTATTCGT 57.616 34.783 0.00 0.00 0.00 3.85
252 253 6.502136 TGTGATTGTTGCCATTTATTCGTA 57.498 33.333 0.00 0.00 0.00 3.43
253 254 6.318628 TGTGATTGTTGCCATTTATTCGTAC 58.681 36.000 0.00 0.00 0.00 3.67
254 255 5.741982 GTGATTGTTGCCATTTATTCGTACC 59.258 40.000 0.00 0.00 0.00 3.34
255 256 5.416013 TGATTGTTGCCATTTATTCGTACCA 59.584 36.000 0.00 0.00 0.00 3.25
256 257 4.955925 TGTTGCCATTTATTCGTACCAG 57.044 40.909 0.00 0.00 0.00 4.00
257 258 3.127895 TGTTGCCATTTATTCGTACCAGC 59.872 43.478 0.00 0.00 0.00 4.85
258 259 3.275617 TGCCATTTATTCGTACCAGCT 57.724 42.857 0.00 0.00 0.00 4.24
259 260 2.942376 TGCCATTTATTCGTACCAGCTG 59.058 45.455 6.78 6.78 0.00 4.24
260 261 2.290641 GCCATTTATTCGTACCAGCTGG 59.709 50.000 31.60 31.60 42.17 4.85
270 271 3.811702 CCAGCTGGTTCCTCAGGA 58.188 61.111 25.53 0.00 35.43 3.86
271 272 2.069776 CCAGCTGGTTCCTCAGGAA 58.930 57.895 25.53 0.34 39.66 3.36
272 273 0.622665 CCAGCTGGTTCCTCAGGAAT 59.377 55.000 25.53 0.00 44.04 3.01
273 274 1.005215 CCAGCTGGTTCCTCAGGAATT 59.995 52.381 25.53 0.00 44.04 2.17
274 275 2.089980 CAGCTGGTTCCTCAGGAATTG 58.910 52.381 10.09 4.24 44.04 2.32
275 276 0.813821 GCTGGTTCCTCAGGAATTGC 59.186 55.000 10.09 10.66 44.04 3.56
276 277 1.089920 CTGGTTCCTCAGGAATTGCG 58.910 55.000 10.09 0.00 44.04 4.85
277 278 0.322456 TGGTTCCTCAGGAATTGCGG 60.322 55.000 10.09 0.00 44.04 5.69
278 279 0.322546 GGTTCCTCAGGAATTGCGGT 60.323 55.000 10.09 0.00 44.04 5.68
279 280 1.534729 GTTCCTCAGGAATTGCGGTT 58.465 50.000 10.09 0.00 44.04 4.44
280 281 2.617021 GGTTCCTCAGGAATTGCGGTTA 60.617 50.000 10.09 0.00 44.04 2.85
281 282 3.078837 GTTCCTCAGGAATTGCGGTTAA 58.921 45.455 10.09 0.00 44.04 2.01
282 283 3.644966 TCCTCAGGAATTGCGGTTAAT 57.355 42.857 0.00 0.00 33.24 1.40
283 284 3.963129 TCCTCAGGAATTGCGGTTAATT 58.037 40.909 0.00 0.00 33.24 1.40
284 285 3.945285 TCCTCAGGAATTGCGGTTAATTC 59.055 43.478 0.00 9.77 43.19 2.17
285 286 3.947834 CCTCAGGAATTGCGGTTAATTCT 59.052 43.478 14.78 4.33 43.35 2.40
286 287 4.399303 CCTCAGGAATTGCGGTTAATTCTT 59.601 41.667 14.78 8.35 43.35 2.52
287 288 5.105756 CCTCAGGAATTGCGGTTAATTCTTT 60.106 40.000 14.78 6.06 43.35 2.52
288 289 6.094881 CCTCAGGAATTGCGGTTAATTCTTTA 59.905 38.462 14.78 4.14 43.35 1.85
289 290 7.362574 CCTCAGGAATTGCGGTTAATTCTTTAA 60.363 37.037 14.78 0.00 43.35 1.52
290 291 8.062065 TCAGGAATTGCGGTTAATTCTTTAAT 57.938 30.769 14.78 0.00 43.35 1.40
291 292 8.527810 TCAGGAATTGCGGTTAATTCTTTAATT 58.472 29.630 14.78 0.00 43.35 1.40
292 293 9.150348 CAGGAATTGCGGTTAATTCTTTAATTT 57.850 29.630 14.78 0.00 43.35 1.82
298 299 8.958175 TGCGGTTAATTCTTTAATTTACACTG 57.042 30.769 0.00 0.00 36.69 3.66
299 300 7.539366 TGCGGTTAATTCTTTAATTTACACTGC 59.461 33.333 11.00 11.00 38.97 4.40
300 301 7.539366 GCGGTTAATTCTTTAATTTACACTGCA 59.461 33.333 12.10 0.00 38.71 4.41
301 302 9.567848 CGGTTAATTCTTTAATTTACACTGCAT 57.432 29.630 0.00 0.00 36.69 3.96
312 313 5.964887 TTTACACTGCATTTCAAGTTTGC 57.035 34.783 0.00 0.00 36.91 3.68
313 314 3.523606 ACACTGCATTTCAAGTTTGCA 57.476 38.095 0.35 0.35 43.63 4.08
314 315 3.859443 ACACTGCATTTCAAGTTTGCAA 58.141 36.364 0.00 0.00 44.99 4.08
315 316 4.444536 ACACTGCATTTCAAGTTTGCAAT 58.555 34.783 0.00 0.00 44.99 3.56
316 317 4.271533 ACACTGCATTTCAAGTTTGCAATG 59.728 37.500 0.00 11.28 45.97 2.82
317 318 4.508492 CACTGCATTTCAAGTTTGCAATGA 59.492 37.500 17.41 0.00 44.00 2.57
318 319 4.748102 ACTGCATTTCAAGTTTGCAATGAG 59.252 37.500 17.41 13.85 44.99 2.90
319 320 4.695396 TGCATTTCAAGTTTGCAATGAGT 58.305 34.783 17.41 0.00 42.02 3.41
320 321 4.508492 TGCATTTCAAGTTTGCAATGAGTG 59.492 37.500 17.41 5.90 42.02 3.51
321 322 4.508861 GCATTTCAAGTTTGCAATGAGTGT 59.491 37.500 17.41 0.00 42.02 3.55
322 323 5.006941 GCATTTCAAGTTTGCAATGAGTGTT 59.993 36.000 17.41 0.00 42.02 3.32
323 324 6.642917 CATTTCAAGTTTGCAATGAGTGTTC 58.357 36.000 10.42 0.00 42.02 3.18
324 325 5.581126 TTCAAGTTTGCAATGAGTGTTCT 57.419 34.783 0.00 0.00 0.00 3.01
325 326 5.581126 TCAAGTTTGCAATGAGTGTTCTT 57.419 34.783 0.00 0.00 0.00 2.52
326 327 6.691754 TCAAGTTTGCAATGAGTGTTCTTA 57.308 33.333 0.00 0.00 0.00 2.10
327 328 7.094508 TCAAGTTTGCAATGAGTGTTCTTAA 57.905 32.000 0.00 0.00 0.00 1.85
328 329 7.715657 TCAAGTTTGCAATGAGTGTTCTTAAT 58.284 30.769 0.00 0.00 0.00 1.40
329 330 8.196771 TCAAGTTTGCAATGAGTGTTCTTAATT 58.803 29.630 0.00 0.00 0.00 1.40
330 331 8.819974 CAAGTTTGCAATGAGTGTTCTTAATTT 58.180 29.630 0.00 0.00 0.00 1.82
332 333 9.683069 AGTTTGCAATGAGTGTTCTTAATTTAG 57.317 29.630 0.00 0.00 0.00 1.85
333 334 9.463443 GTTTGCAATGAGTGTTCTTAATTTAGT 57.537 29.630 0.00 0.00 0.00 2.24
334 335 9.462174 TTTGCAATGAGTGTTCTTAATTTAGTG 57.538 29.630 0.00 0.00 0.00 2.74
335 336 7.083858 TGCAATGAGTGTTCTTAATTTAGTGC 58.916 34.615 0.00 0.00 0.00 4.40
336 337 7.040478 TGCAATGAGTGTTCTTAATTTAGTGCT 60.040 33.333 0.00 0.00 0.00 4.40
337 338 7.809806 GCAATGAGTGTTCTTAATTTAGTGCTT 59.190 33.333 0.00 0.00 0.00 3.91
338 339 9.683069 CAATGAGTGTTCTTAATTTAGTGCTTT 57.317 29.630 0.00 0.00 0.00 3.51
339 340 9.683069 AATGAGTGTTCTTAATTTAGTGCTTTG 57.317 29.630 0.00 0.00 0.00 2.77
340 341 7.648142 TGAGTGTTCTTAATTTAGTGCTTTGG 58.352 34.615 0.00 0.00 0.00 3.28
341 342 7.284489 TGAGTGTTCTTAATTTAGTGCTTTGGT 59.716 33.333 0.00 0.00 0.00 3.67
342 343 7.649057 AGTGTTCTTAATTTAGTGCTTTGGTC 58.351 34.615 0.00 0.00 0.00 4.02
343 344 7.502561 AGTGTTCTTAATTTAGTGCTTTGGTCT 59.497 33.333 0.00 0.00 0.00 3.85
344 345 8.780249 GTGTTCTTAATTTAGTGCTTTGGTCTA 58.220 33.333 0.00 0.00 0.00 2.59
345 346 9.515226 TGTTCTTAATTTAGTGCTTTGGTCTAT 57.485 29.630 0.00 0.00 0.00 1.98
346 347 9.989869 GTTCTTAATTTAGTGCTTTGGTCTATC 57.010 33.333 0.00 0.00 0.00 2.08
347 348 9.733556 TTCTTAATTTAGTGCTTTGGTCTATCA 57.266 29.630 0.00 0.00 0.00 2.15
348 349 9.733556 TCTTAATTTAGTGCTTTGGTCTATCAA 57.266 29.630 0.00 0.00 0.00 2.57
351 352 7.759489 ATTTAGTGCTTTGGTCTATCAAACA 57.241 32.000 0.00 0.00 33.62 2.83
352 353 7.575414 TTTAGTGCTTTGGTCTATCAAACAA 57.425 32.000 0.00 0.00 33.62 2.83
353 354 7.759489 TTAGTGCTTTGGTCTATCAAACAAT 57.241 32.000 0.00 0.00 33.62 2.71
354 355 8.856153 TTAGTGCTTTGGTCTATCAAACAATA 57.144 30.769 0.00 0.00 33.62 1.90
355 356 7.759489 AGTGCTTTGGTCTATCAAACAATAA 57.241 32.000 0.00 0.00 33.62 1.40
356 357 8.177119 AGTGCTTTGGTCTATCAAACAATAAA 57.823 30.769 0.00 0.00 33.62 1.40
357 358 8.637986 AGTGCTTTGGTCTATCAAACAATAAAA 58.362 29.630 0.00 0.00 33.62 1.52
358 359 9.255304 GTGCTTTGGTCTATCAAACAATAAAAA 57.745 29.630 0.00 0.00 33.62 1.94
383 384 8.467402 AACATATTCTAGCGTAATACTCATGC 57.533 34.615 0.00 0.00 0.00 4.06
384 385 6.747739 ACATATTCTAGCGTAATACTCATGCG 59.252 38.462 0.00 0.00 33.03 4.73
385 386 4.823790 TTCTAGCGTAATACTCATGCGA 57.176 40.909 0.00 0.00 33.03 5.10
386 387 4.823790 TCTAGCGTAATACTCATGCGAA 57.176 40.909 0.00 0.00 33.03 4.70
387 388 5.177725 TCTAGCGTAATACTCATGCGAAA 57.822 39.130 0.00 0.00 33.03 3.46
388 389 5.584442 TCTAGCGTAATACTCATGCGAAAA 58.416 37.500 0.00 0.00 33.03 2.29
389 390 4.778842 AGCGTAATACTCATGCGAAAAG 57.221 40.909 0.00 0.00 33.03 2.27
390 391 4.181578 AGCGTAATACTCATGCGAAAAGT 58.818 39.130 0.00 0.00 33.03 2.66
391 392 4.630069 AGCGTAATACTCATGCGAAAAGTT 59.370 37.500 0.00 0.00 33.03 2.66
392 393 5.121768 AGCGTAATACTCATGCGAAAAGTTT 59.878 36.000 0.00 0.00 33.03 2.66
393 394 5.448162 GCGTAATACTCATGCGAAAAGTTTC 59.552 40.000 0.00 0.00 0.00 2.78
402 403 3.837669 GAAAAGTTTCGCGAAGGCA 57.162 47.368 22.21 4.39 39.92 4.75
403 404 2.331809 GAAAAGTTTCGCGAAGGCAT 57.668 45.000 22.21 9.32 39.92 4.40
404 405 1.978782 GAAAAGTTTCGCGAAGGCATG 59.021 47.619 22.21 0.00 39.92 4.06
405 406 1.234821 AAAGTTTCGCGAAGGCATGA 58.765 45.000 22.21 2.71 39.92 3.07
406 407 0.517316 AAGTTTCGCGAAGGCATGAC 59.483 50.000 22.21 15.70 39.92 3.06
407 408 0.320771 AGTTTCGCGAAGGCATGACT 60.321 50.000 22.21 17.74 39.92 3.41
408 409 0.517316 GTTTCGCGAAGGCATGACTT 59.483 50.000 22.21 15.42 39.92 3.01
409 410 0.796312 TTTCGCGAAGGCATGACTTC 59.204 50.000 28.53 28.53 42.63 3.01
410 411 1.019278 TTCGCGAAGGCATGACTTCC 61.019 55.000 31.15 22.89 43.01 3.46
411 412 1.448540 CGCGAAGGCATGACTTCCT 60.449 57.895 31.15 9.69 43.01 3.36
412 413 1.699656 CGCGAAGGCATGACTTCCTG 61.700 60.000 31.15 21.22 43.01 3.86
413 414 1.372087 GCGAAGGCATGACTTCCTGG 61.372 60.000 31.15 20.18 43.01 4.45
414 415 0.036010 CGAAGGCATGACTTCCTGGT 60.036 55.000 31.15 1.15 43.01 4.00
415 416 1.207089 CGAAGGCATGACTTCCTGGTA 59.793 52.381 31.15 0.00 43.01 3.25
416 417 2.158900 CGAAGGCATGACTTCCTGGTAT 60.159 50.000 31.15 0.00 43.01 2.73
417 418 3.682718 CGAAGGCATGACTTCCTGGTATT 60.683 47.826 31.15 0.00 43.01 1.89
418 419 3.567478 AGGCATGACTTCCTGGTATTC 57.433 47.619 0.00 0.00 0.00 1.75
419 420 3.118531 AGGCATGACTTCCTGGTATTCT 58.881 45.455 0.00 0.00 0.00 2.40
420 421 3.118112 AGGCATGACTTCCTGGTATTCTG 60.118 47.826 0.00 0.00 0.00 3.02
421 422 3.370953 GGCATGACTTCCTGGTATTCTGT 60.371 47.826 0.00 0.00 0.00 3.41
422 423 3.624861 GCATGACTTCCTGGTATTCTGTG 59.375 47.826 0.00 0.00 0.00 3.66
423 424 3.334583 TGACTTCCTGGTATTCTGTGC 57.665 47.619 0.00 0.00 0.00 4.57
424 425 2.637382 TGACTTCCTGGTATTCTGTGCA 59.363 45.455 0.00 0.00 0.00 4.57
425 426 3.072330 TGACTTCCTGGTATTCTGTGCAA 59.928 43.478 0.00 0.00 0.00 4.08
426 427 4.072131 GACTTCCTGGTATTCTGTGCAAA 58.928 43.478 0.00 0.00 0.00 3.68
427 428 4.469657 ACTTCCTGGTATTCTGTGCAAAA 58.530 39.130 0.00 0.00 0.00 2.44
428 429 5.079643 ACTTCCTGGTATTCTGTGCAAAAT 58.920 37.500 0.00 0.00 0.00 1.82
429 430 6.245408 ACTTCCTGGTATTCTGTGCAAAATA 58.755 36.000 0.00 0.00 0.00 1.40
430 431 6.719370 ACTTCCTGGTATTCTGTGCAAAATAA 59.281 34.615 0.00 0.00 0.00 1.40
431 432 6.509418 TCCTGGTATTCTGTGCAAAATAAC 57.491 37.500 0.00 0.00 0.00 1.89
432 433 5.123186 TCCTGGTATTCTGTGCAAAATAACG 59.877 40.000 0.00 0.00 0.00 3.18
433 434 5.123186 CCTGGTATTCTGTGCAAAATAACGA 59.877 40.000 0.00 0.00 0.00 3.85
434 435 6.348950 CCTGGTATTCTGTGCAAAATAACGAA 60.349 38.462 0.00 0.00 0.00 3.85
435 436 6.971602 TGGTATTCTGTGCAAAATAACGAAA 58.028 32.000 0.00 0.00 0.00 3.46
436 437 7.598278 TGGTATTCTGTGCAAAATAACGAAAT 58.402 30.769 0.00 0.00 0.00 2.17
437 438 7.753132 TGGTATTCTGTGCAAAATAACGAAATC 59.247 33.333 0.00 0.00 0.00 2.17
438 439 6.853279 ATTCTGTGCAAAATAACGAAATCG 57.147 33.333 0.48 0.48 46.33 3.34
439 440 4.717991 TCTGTGCAAAATAACGAAATCGG 58.282 39.130 7.81 0.00 44.95 4.18
440 441 4.214545 TCTGTGCAAAATAACGAAATCGGT 59.785 37.500 7.81 2.80 44.95 4.69
441 442 5.408909 TCTGTGCAAAATAACGAAATCGGTA 59.591 36.000 2.71 2.71 46.28 4.02
442 443 5.383958 TGTGCAAAATAACGAAATCGGTAC 58.616 37.500 2.21 0.00 44.95 3.34
443 444 5.179742 TGTGCAAAATAACGAAATCGGTACT 59.820 36.000 2.21 0.00 44.95 2.73
444 445 5.731263 GTGCAAAATAACGAAATCGGTACTC 59.269 40.000 2.21 0.00 44.95 2.59
445 446 5.163834 TGCAAAATAACGAAATCGGTACTCC 60.164 40.000 2.21 0.00 44.95 3.85
446 447 5.064325 GCAAAATAACGAAATCGGTACTCCT 59.936 40.000 2.21 0.00 44.95 3.69
447 448 6.256321 GCAAAATAACGAAATCGGTACTCCTA 59.744 38.462 2.21 0.00 44.95 2.94
448 449 7.516312 GCAAAATAACGAAATCGGTACTCCTAG 60.516 40.741 2.21 0.00 44.95 3.02
449 450 6.705863 AATAACGAAATCGGTACTCCTAGT 57.294 37.500 2.21 0.00 44.95 2.57
450 451 7.807977 AATAACGAAATCGGTACTCCTAGTA 57.192 36.000 2.21 0.00 44.95 1.82
451 452 7.992754 ATAACGAAATCGGTACTCCTAGTAT 57.007 36.000 2.21 0.00 44.95 2.12
452 453 9.507329 AATAACGAAATCGGTACTCCTAGTATA 57.493 33.333 2.21 0.00 44.95 1.47
453 454 7.807977 AACGAAATCGGTACTCCTAGTATAA 57.192 36.000 7.81 0.00 44.95 0.98
454 455 7.807977 ACGAAATCGGTACTCCTAGTATAAA 57.192 36.000 7.81 0.00 44.95 1.40
455 456 8.225603 ACGAAATCGGTACTCCTAGTATAAAA 57.774 34.615 7.81 0.00 44.95 1.52
456 457 8.686334 ACGAAATCGGTACTCCTAGTATAAAAA 58.314 33.333 7.81 0.00 44.95 1.94
481 482 9.691362 AAATGTTAGTATTCACATGTTTTGGTC 57.309 29.630 0.00 0.00 33.76 4.02
482 483 8.635765 ATGTTAGTATTCACATGTTTTGGTCT 57.364 30.769 0.00 0.00 32.19 3.85
483 484 8.458573 TGTTAGTATTCACATGTTTTGGTCTT 57.541 30.769 0.00 0.00 0.00 3.01
484 485 8.349245 TGTTAGTATTCACATGTTTTGGTCTTG 58.651 33.333 0.00 0.00 0.00 3.02
485 486 5.772521 AGTATTCACATGTTTTGGTCTTGC 58.227 37.500 0.00 0.00 0.00 4.01
486 487 4.669206 ATTCACATGTTTTGGTCTTGCA 57.331 36.364 0.00 0.00 0.00 4.08
487 488 4.462508 TTCACATGTTTTGGTCTTGCAA 57.537 36.364 0.00 0.00 0.00 4.08
488 489 4.669206 TCACATGTTTTGGTCTTGCAAT 57.331 36.364 0.00 0.00 0.00 3.56
489 490 5.021033 TCACATGTTTTGGTCTTGCAATT 57.979 34.783 0.00 0.00 0.00 2.32
490 491 5.426504 TCACATGTTTTGGTCTTGCAATTT 58.573 33.333 0.00 0.00 0.00 1.82
491 492 5.879223 TCACATGTTTTGGTCTTGCAATTTT 59.121 32.000 0.00 0.00 0.00 1.82
492 493 5.966503 CACATGTTTTGGTCTTGCAATTTTG 59.033 36.000 0.00 0.00 0.00 2.44
522 523 7.931578 TTTTTAGAATACCACGGATGTCATT 57.068 32.000 0.00 0.00 0.00 2.57
523 524 7.548196 TTTTAGAATACCACGGATGTCATTC 57.452 36.000 0.00 0.00 0.00 2.67
524 525 4.753516 AGAATACCACGGATGTCATTCA 57.246 40.909 0.00 0.00 31.27 2.57
525 526 5.296151 AGAATACCACGGATGTCATTCAT 57.704 39.130 0.00 0.00 39.77 2.57
526 527 5.684704 AGAATACCACGGATGTCATTCATT 58.315 37.500 0.00 0.00 36.83 2.57
527 528 5.760253 AGAATACCACGGATGTCATTCATTC 59.240 40.000 0.00 0.00 36.83 2.67
528 529 2.643551 ACCACGGATGTCATTCATTCC 58.356 47.619 0.00 0.00 36.83 3.01
529 530 1.949525 CCACGGATGTCATTCATTCCC 59.050 52.381 0.00 0.00 36.83 3.97
530 531 1.599071 CACGGATGTCATTCATTCCCG 59.401 52.381 6.79 6.79 44.35 5.14
531 532 1.484653 ACGGATGTCATTCATTCCCGA 59.515 47.619 13.58 0.00 42.68 5.14
532 533 2.093181 ACGGATGTCATTCATTCCCGAA 60.093 45.455 13.58 0.00 42.68 4.30
533 534 2.942376 CGGATGTCATTCATTCCCGAAA 59.058 45.455 2.95 0.00 42.68 3.46
534 535 3.242739 CGGATGTCATTCATTCCCGAAAC 60.243 47.826 2.95 0.00 42.68 2.78
535 536 3.947834 GGATGTCATTCATTCCCGAAACT 59.052 43.478 0.00 0.00 36.83 2.66
536 537 4.399303 GGATGTCATTCATTCCCGAAACTT 59.601 41.667 0.00 0.00 36.83 2.66
537 538 5.105756 GGATGTCATTCATTCCCGAAACTTT 60.106 40.000 0.00 0.00 36.83 2.66
538 539 5.782893 TGTCATTCATTCCCGAAACTTTT 57.217 34.783 0.00 0.00 0.00 2.27
539 540 5.768317 TGTCATTCATTCCCGAAACTTTTC 58.232 37.500 0.00 0.00 0.00 2.29
540 541 5.300539 TGTCATTCATTCCCGAAACTTTTCA 59.699 36.000 2.77 0.00 37.01 2.69
541 542 5.629435 GTCATTCATTCCCGAAACTTTTCAC 59.371 40.000 2.77 0.00 37.01 3.18
542 543 5.300539 TCATTCATTCCCGAAACTTTTCACA 59.699 36.000 2.77 0.00 37.01 3.58
543 544 5.782893 TTCATTCCCGAAACTTTTCACAT 57.217 34.783 2.77 0.00 37.01 3.21
544 545 5.119931 TCATTCCCGAAACTTTTCACATG 57.880 39.130 2.77 0.00 37.01 3.21
545 546 4.824537 TCATTCCCGAAACTTTTCACATGA 59.175 37.500 0.00 1.74 37.01 3.07
546 547 4.829064 TTCCCGAAACTTTTCACATGAG 57.171 40.909 0.00 0.00 37.01 2.90
547 548 3.146066 TCCCGAAACTTTTCACATGAGG 58.854 45.455 0.00 0.00 37.01 3.86
548 549 2.228822 CCCGAAACTTTTCACATGAGGG 59.771 50.000 0.00 0.20 37.01 4.30
549 550 2.351738 CCGAAACTTTTCACATGAGGGC 60.352 50.000 0.00 0.00 37.01 5.19
550 551 2.293122 CGAAACTTTTCACATGAGGGCA 59.707 45.455 0.00 0.00 37.01 5.36
551 552 3.243367 CGAAACTTTTCACATGAGGGCAA 60.243 43.478 0.00 0.00 37.01 4.52
552 553 4.301628 GAAACTTTTCACATGAGGGCAAG 58.698 43.478 0.00 0.00 37.15 4.01
553 554 1.615392 ACTTTTCACATGAGGGCAAGC 59.385 47.619 0.00 0.00 0.00 4.01
554 555 0.968405 TTTTCACATGAGGGCAAGCC 59.032 50.000 0.00 1.52 0.00 4.35
555 556 0.178967 TTTCACATGAGGGCAAGCCA 60.179 50.000 13.87 0.00 37.98 4.75
556 557 0.178967 TTCACATGAGGGCAAGCCAA 60.179 50.000 13.87 0.00 37.98 4.52
557 558 0.040058 TCACATGAGGGCAAGCCAAT 59.960 50.000 13.87 0.04 37.98 3.16
558 559 0.174845 CACATGAGGGCAAGCCAATG 59.825 55.000 13.87 14.60 37.98 2.82
559 560 0.251922 ACATGAGGGCAAGCCAATGT 60.252 50.000 13.87 15.19 37.98 2.71
560 561 1.005805 ACATGAGGGCAAGCCAATGTA 59.994 47.619 18.72 1.24 35.69 2.29
561 562 2.313317 CATGAGGGCAAGCCAATGTAT 58.687 47.619 13.87 0.00 37.98 2.29
562 563 2.057137 TGAGGGCAAGCCAATGTATC 57.943 50.000 13.87 1.70 37.98 2.24
563 564 1.565759 TGAGGGCAAGCCAATGTATCT 59.434 47.619 13.87 0.00 37.98 1.98
568 569 4.646492 AGGGCAAGCCAATGTATCTAAAAG 59.354 41.667 13.87 0.00 37.98 2.27
627 628 2.107204 ACTCAGTTTTGCCCTCAGATGT 59.893 45.455 0.00 0.00 0.00 3.06
774 777 0.319986 TATTCAGACCGTTGCACGCA 60.320 50.000 0.00 0.00 40.91 5.24
964 1230 1.268283 GGAAGCTAGCAGTGGAGGGT 61.268 60.000 18.83 0.00 0.00 4.34
1018 1529 1.649664 CATGTCTTCCTCAAGCTCCG 58.350 55.000 0.00 0.00 0.00 4.63
1278 1815 1.377202 GGTCGATGCTCTGGCCAAA 60.377 57.895 7.01 0.00 37.74 3.28
1375 1912 2.028130 GAGCTCCGGAAGAAGAGATGA 58.972 52.381 5.23 0.00 0.00 2.92
1444 1988 5.621193 TGTTGAAGAAGAAGGTTAGGAAGG 58.379 41.667 0.00 0.00 0.00 3.46
1472 2026 8.932610 TGAATACCAATACCCATTTGCAAATAT 58.067 29.630 23.69 14.58 0.00 1.28
1499 2053 5.772004 TGGGCATTTGTAGGTATGGTAATT 58.228 37.500 0.00 0.00 0.00 1.40
1800 2408 0.761802 GCAGGCTAGACTAATGGGCT 59.238 55.000 0.00 0.00 37.00 5.19
1809 2417 4.510167 AGACTAATGGGCTAACTGCATT 57.490 40.909 0.00 0.00 45.15 3.56
2023 2692 7.656948 TCAAAGACCAAAATGTCATGGAAAATC 59.343 33.333 0.00 0.00 39.12 2.17
2434 3365 2.555325 GTGGCACTTGGTTTAGGGTTAC 59.445 50.000 11.13 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.468746 CGCTAGCTAGATAGAGATATGGACC 59.531 48.000 25.15 0.00 0.00 4.46
40 41 2.942376 CTGCAACCAACACAAGACACTA 59.058 45.455 0.00 0.00 0.00 2.74
68 69 6.616548 TGCCATGGATATGATAGATGGACATA 59.383 38.462 18.40 0.00 36.45 2.29
69 70 5.430745 TGCCATGGATATGATAGATGGACAT 59.569 40.000 18.40 0.00 36.45 3.06
71 72 5.104610 AGTGCCATGGATATGATAGATGGAC 60.105 44.000 18.40 0.00 36.45 4.02
72 73 5.034878 AGTGCCATGGATATGATAGATGGA 58.965 41.667 18.40 0.00 36.45 3.41
73 74 5.104652 TCAGTGCCATGGATATGATAGATGG 60.105 44.000 18.40 0.00 36.36 3.51
74 75 5.985911 TCAGTGCCATGGATATGATAGATG 58.014 41.667 18.40 0.00 36.36 2.90
76 77 5.280164 GGTTCAGTGCCATGGATATGATAGA 60.280 44.000 18.40 0.00 36.36 1.98
78 79 4.350520 TGGTTCAGTGCCATGGATATGATA 59.649 41.667 18.40 4.04 36.36 2.15
79 80 3.138839 TGGTTCAGTGCCATGGATATGAT 59.861 43.478 18.40 0.00 36.36 2.45
80 81 2.509131 TGGTTCAGTGCCATGGATATGA 59.491 45.455 18.40 12.42 36.36 2.15
83 84 2.158623 GGATGGTTCAGTGCCATGGATA 60.159 50.000 18.40 0.00 45.87 2.59
85 86 0.034186 GGATGGTTCAGTGCCATGGA 60.034 55.000 18.40 0.00 45.87 3.41
86 87 0.323633 TGGATGGTTCAGTGCCATGG 60.324 55.000 7.63 7.63 45.87 3.66
89 90 3.554934 GATTATGGATGGTTCAGTGCCA 58.445 45.455 0.00 0.00 40.68 4.92
91 92 3.554934 TGGATTATGGATGGTTCAGTGC 58.445 45.455 0.00 0.00 0.00 4.40
92 93 9.334947 GATATATGGATTATGGATGGTTCAGTG 57.665 37.037 0.00 0.00 0.00 3.66
93 94 9.061252 TGATATATGGATTATGGATGGTTCAGT 57.939 33.333 0.00 0.00 0.00 3.41
94 95 9.910267 TTGATATATGGATTATGGATGGTTCAG 57.090 33.333 0.00 0.00 0.00 3.02
124 125 8.512956 GGTTCAGCGACATAGATAACTCTTATA 58.487 37.037 0.00 0.00 32.66 0.98
125 126 7.014326 TGGTTCAGCGACATAGATAACTCTTAT 59.986 37.037 0.00 0.00 32.66 1.73
126 127 6.320418 TGGTTCAGCGACATAGATAACTCTTA 59.680 38.462 0.00 0.00 32.66 2.10
127 128 5.127194 TGGTTCAGCGACATAGATAACTCTT 59.873 40.000 0.00 0.00 32.66 2.85
128 129 4.645136 TGGTTCAGCGACATAGATAACTCT 59.355 41.667 0.00 0.00 35.39 3.24
129 130 4.933330 TGGTTCAGCGACATAGATAACTC 58.067 43.478 0.00 0.00 0.00 3.01
130 131 5.537300 ATGGTTCAGCGACATAGATAACT 57.463 39.130 0.00 0.00 0.00 2.24
131 132 7.063544 GGATTATGGTTCAGCGACATAGATAAC 59.936 40.741 0.00 0.00 0.00 1.89
132 133 7.097192 GGATTATGGTTCAGCGACATAGATAA 58.903 38.462 0.00 0.00 0.00 1.75
133 134 6.210584 TGGATTATGGTTCAGCGACATAGATA 59.789 38.462 0.00 0.00 0.00 1.98
134 135 5.012046 TGGATTATGGTTCAGCGACATAGAT 59.988 40.000 0.00 0.00 0.00 1.98
135 136 4.343814 TGGATTATGGTTCAGCGACATAGA 59.656 41.667 0.00 0.00 0.00 1.98
136 137 4.449068 GTGGATTATGGTTCAGCGACATAG 59.551 45.833 0.00 0.00 0.00 2.23
137 138 4.377021 GTGGATTATGGTTCAGCGACATA 58.623 43.478 0.00 0.00 0.00 2.29
138 139 3.206150 GTGGATTATGGTTCAGCGACAT 58.794 45.455 0.00 0.00 0.00 3.06
139 140 2.627945 GTGGATTATGGTTCAGCGACA 58.372 47.619 0.00 0.00 0.00 4.35
140 141 1.593006 CGTGGATTATGGTTCAGCGAC 59.407 52.381 0.00 0.00 0.00 5.19
141 142 1.934589 CGTGGATTATGGTTCAGCGA 58.065 50.000 0.00 0.00 0.00 4.93
142 143 0.304705 GCGTGGATTATGGTTCAGCG 59.695 55.000 0.00 0.00 0.00 5.18
143 144 1.378531 TGCGTGGATTATGGTTCAGC 58.621 50.000 0.00 0.00 0.00 4.26
144 145 2.945008 ACATGCGTGGATTATGGTTCAG 59.055 45.455 11.36 0.00 0.00 3.02
145 146 2.997980 ACATGCGTGGATTATGGTTCA 58.002 42.857 11.36 0.00 0.00 3.18
146 147 4.997395 AGATACATGCGTGGATTATGGTTC 59.003 41.667 11.36 0.00 0.00 3.62
147 148 4.973168 AGATACATGCGTGGATTATGGTT 58.027 39.130 11.36 0.00 0.00 3.67
148 149 4.623932 AGATACATGCGTGGATTATGGT 57.376 40.909 11.36 0.00 0.00 3.55
149 150 6.577103 AGATAGATACATGCGTGGATTATGG 58.423 40.000 11.36 0.00 0.00 2.74
150 151 9.189723 CATAGATAGATACATGCGTGGATTATG 57.810 37.037 11.36 7.96 0.00 1.90
151 152 8.918116 ACATAGATAGATACATGCGTGGATTAT 58.082 33.333 11.36 7.98 0.00 1.28
152 153 8.293699 ACATAGATAGATACATGCGTGGATTA 57.706 34.615 11.36 3.49 0.00 1.75
153 154 7.093771 TGACATAGATAGATACATGCGTGGATT 60.094 37.037 11.36 1.27 0.00 3.01
154 155 6.378280 TGACATAGATAGATACATGCGTGGAT 59.622 38.462 2.32 2.32 0.00 3.41
155 156 5.710099 TGACATAGATAGATACATGCGTGGA 59.290 40.000 11.36 0.70 0.00 4.02
156 157 5.954335 TGACATAGATAGATACATGCGTGG 58.046 41.667 11.36 0.00 0.00 4.94
157 158 7.253422 TGATGACATAGATAGATACATGCGTG 58.747 38.462 3.82 3.82 0.00 5.34
158 159 7.121907 ACTGATGACATAGATAGATACATGCGT 59.878 37.037 0.00 0.00 0.00 5.24
159 160 7.479150 ACTGATGACATAGATAGATACATGCG 58.521 38.462 0.00 0.00 0.00 4.73
160 161 9.729023 GTACTGATGACATAGATAGATACATGC 57.271 37.037 0.00 0.00 0.00 4.06
163 164 9.674068 GGAGTACTGATGACATAGATAGATACA 57.326 37.037 0.00 0.00 0.00 2.29
164 165 9.674068 TGGAGTACTGATGACATAGATAGATAC 57.326 37.037 0.00 0.00 0.00 2.24
166 167 9.593565 TTTGGAGTACTGATGACATAGATAGAT 57.406 33.333 0.00 0.00 0.00 1.98
167 168 8.996651 TTTGGAGTACTGATGACATAGATAGA 57.003 34.615 0.00 0.00 0.00 1.98
168 169 9.689976 CTTTTGGAGTACTGATGACATAGATAG 57.310 37.037 0.00 0.00 0.00 2.08
169 170 9.201989 ACTTTTGGAGTACTGATGACATAGATA 57.798 33.333 0.00 0.00 36.65 1.98
170 171 8.083828 ACTTTTGGAGTACTGATGACATAGAT 57.916 34.615 0.00 0.00 36.65 1.98
171 172 7.482169 ACTTTTGGAGTACTGATGACATAGA 57.518 36.000 0.00 0.00 36.65 1.98
172 173 9.307121 CTTACTTTTGGAGTACTGATGACATAG 57.693 37.037 0.00 0.00 40.51 2.23
173 174 8.258007 CCTTACTTTTGGAGTACTGATGACATA 58.742 37.037 0.00 0.00 40.51 2.29
174 175 7.106239 CCTTACTTTTGGAGTACTGATGACAT 58.894 38.462 0.00 0.00 40.51 3.06
175 176 6.042781 ACCTTACTTTTGGAGTACTGATGACA 59.957 38.462 0.00 0.00 40.51 3.58
176 177 6.369065 CACCTTACTTTTGGAGTACTGATGAC 59.631 42.308 0.00 0.00 40.51 3.06
177 178 6.042781 ACACCTTACTTTTGGAGTACTGATGA 59.957 38.462 0.00 0.00 40.51 2.92
178 179 6.147821 CACACCTTACTTTTGGAGTACTGATG 59.852 42.308 0.00 0.00 40.51 3.07
179 180 6.183361 ACACACCTTACTTTTGGAGTACTGAT 60.183 38.462 0.00 0.00 40.51 2.90
180 181 5.129815 ACACACCTTACTTTTGGAGTACTGA 59.870 40.000 0.00 0.00 40.51 3.41
181 182 5.365619 ACACACCTTACTTTTGGAGTACTG 58.634 41.667 0.00 0.00 40.51 2.74
182 183 5.625568 ACACACCTTACTTTTGGAGTACT 57.374 39.130 0.00 0.00 40.51 2.73
183 184 6.688637 AAACACACCTTACTTTTGGAGTAC 57.311 37.500 0.00 0.00 40.51 2.73
184 185 7.496591 CACTAAACACACCTTACTTTTGGAGTA 59.503 37.037 0.00 0.00 39.86 2.59
185 186 6.317893 CACTAAACACACCTTACTTTTGGAGT 59.682 38.462 0.00 0.00 42.55 3.85
186 187 6.540914 TCACTAAACACACCTTACTTTTGGAG 59.459 38.462 0.00 0.00 0.00 3.86
187 188 6.416415 TCACTAAACACACCTTACTTTTGGA 58.584 36.000 0.00 0.00 0.00 3.53
188 189 6.687081 TCACTAAACACACCTTACTTTTGG 57.313 37.500 0.00 0.00 0.00 3.28
189 190 7.925993 TGATCACTAAACACACCTTACTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
190 191 8.691661 ATGATCACTAAACACACCTTACTTTT 57.308 30.769 0.00 0.00 0.00 2.27
191 192 8.691661 AATGATCACTAAACACACCTTACTTT 57.308 30.769 0.00 0.00 0.00 2.66
192 193 9.959721 ATAATGATCACTAAACACACCTTACTT 57.040 29.630 0.00 0.00 0.00 2.24
193 194 9.601217 GATAATGATCACTAAACACACCTTACT 57.399 33.333 0.00 0.00 31.78 2.24
194 195 9.601217 AGATAATGATCACTAAACACACCTTAC 57.399 33.333 0.00 0.00 34.17 2.34
195 196 9.599866 CAGATAATGATCACTAAACACACCTTA 57.400 33.333 0.00 0.00 34.17 2.69
196 197 8.103305 ACAGATAATGATCACTAAACACACCTT 58.897 33.333 0.00 0.00 34.17 3.50
197 198 7.624549 ACAGATAATGATCACTAAACACACCT 58.375 34.615 0.00 0.00 34.17 4.00
198 199 7.849804 ACAGATAATGATCACTAAACACACC 57.150 36.000 0.00 0.00 34.17 4.16
199 200 8.177663 CCAACAGATAATGATCACTAAACACAC 58.822 37.037 0.00 0.00 34.17 3.82
200 201 7.882791 ACCAACAGATAATGATCACTAAACACA 59.117 33.333 0.00 0.00 34.17 3.72
201 202 8.268850 ACCAACAGATAATGATCACTAAACAC 57.731 34.615 0.00 0.00 34.17 3.32
202 203 8.100164 TGACCAACAGATAATGATCACTAAACA 58.900 33.333 0.00 0.00 34.17 2.83
203 204 8.492673 TGACCAACAGATAATGATCACTAAAC 57.507 34.615 0.00 0.00 34.17 2.01
204 205 9.112725 CATGACCAACAGATAATGATCACTAAA 57.887 33.333 0.00 0.00 34.17 1.85
205 206 8.267183 ACATGACCAACAGATAATGATCACTAA 58.733 33.333 0.00 0.00 34.17 2.24
206 207 7.712205 CACATGACCAACAGATAATGATCACTA 59.288 37.037 0.00 0.00 34.17 2.74
207 208 6.541278 CACATGACCAACAGATAATGATCACT 59.459 38.462 0.00 0.00 34.17 3.41
208 209 6.539826 TCACATGACCAACAGATAATGATCAC 59.460 38.462 0.00 0.00 34.17 3.06
209 210 6.652053 TCACATGACCAACAGATAATGATCA 58.348 36.000 0.00 0.00 34.17 2.92
210 211 7.741027 ATCACATGACCAACAGATAATGATC 57.259 36.000 0.00 0.00 0.00 2.92
211 212 7.558807 ACAATCACATGACCAACAGATAATGAT 59.441 33.333 0.00 0.00 0.00 2.45
212 213 6.885918 ACAATCACATGACCAACAGATAATGA 59.114 34.615 0.00 0.00 0.00 2.57
213 214 7.092137 ACAATCACATGACCAACAGATAATG 57.908 36.000 0.00 0.00 0.00 1.90
214 215 7.541162 CAACAATCACATGACCAACAGATAAT 58.459 34.615 0.00 0.00 0.00 1.28
215 216 6.570186 GCAACAATCACATGACCAACAGATAA 60.570 38.462 0.00 0.00 0.00 1.75
216 217 5.106197 GCAACAATCACATGACCAACAGATA 60.106 40.000 0.00 0.00 0.00 1.98
217 218 4.321452 GCAACAATCACATGACCAACAGAT 60.321 41.667 0.00 0.00 0.00 2.90
218 219 3.004629 GCAACAATCACATGACCAACAGA 59.995 43.478 0.00 0.00 0.00 3.41
219 220 3.311106 GCAACAATCACATGACCAACAG 58.689 45.455 0.00 0.00 0.00 3.16
220 221 2.035704 GGCAACAATCACATGACCAACA 59.964 45.455 0.00 0.00 0.00 3.33
221 222 2.676076 GGCAACAATCACATGACCAAC 58.324 47.619 0.00 0.00 0.00 3.77
236 237 3.377172 AGCTGGTACGAATAAATGGCAAC 59.623 43.478 0.00 0.00 0.00 4.17
237 238 3.376859 CAGCTGGTACGAATAAATGGCAA 59.623 43.478 5.57 0.00 0.00 4.52
238 239 2.942376 CAGCTGGTACGAATAAATGGCA 59.058 45.455 5.57 0.00 0.00 4.92
239 240 2.290641 CCAGCTGGTACGAATAAATGGC 59.709 50.000 25.53 0.00 0.00 4.40
253 254 0.622665 ATTCCTGAGGAACCAGCTGG 59.377 55.000 31.60 31.60 45.07 4.85
254 255 2.089980 CAATTCCTGAGGAACCAGCTG 58.910 52.381 17.51 6.78 45.07 4.24
255 256 1.615384 GCAATTCCTGAGGAACCAGCT 60.615 52.381 17.51 0.00 45.07 4.24
256 257 0.813821 GCAATTCCTGAGGAACCAGC 59.186 55.000 17.51 16.28 45.07 4.85
257 258 1.089920 CGCAATTCCTGAGGAACCAG 58.910 55.000 17.51 10.32 45.07 4.00
258 259 3.248043 CGCAATTCCTGAGGAACCA 57.752 52.632 17.51 0.00 45.07 3.67
264 265 5.567138 AAGAATTAACCGCAATTCCTGAG 57.433 39.130 10.12 0.00 43.14 3.35
265 266 5.975693 AAAGAATTAACCGCAATTCCTGA 57.024 34.783 10.12 0.00 43.14 3.86
266 267 8.702163 AATTAAAGAATTAACCGCAATTCCTG 57.298 30.769 10.12 0.00 43.14 3.86
272 273 9.400638 CAGTGTAAATTAAAGAATTAACCGCAA 57.599 29.630 0.00 0.00 34.01 4.85
273 274 7.539366 GCAGTGTAAATTAAAGAATTAACCGCA 59.461 33.333 0.00 0.00 34.01 5.69
274 275 7.539366 TGCAGTGTAAATTAAAGAATTAACCGC 59.461 33.333 0.00 0.00 34.01 5.68
275 276 8.958175 TGCAGTGTAAATTAAAGAATTAACCG 57.042 30.769 0.00 0.00 34.01 4.44
286 287 8.547069 GCAAACTTGAAATGCAGTGTAAATTAA 58.453 29.630 0.00 0.00 39.81 1.40
287 288 7.708322 TGCAAACTTGAAATGCAGTGTAAATTA 59.292 29.630 0.00 0.00 44.52 1.40
288 289 6.538021 TGCAAACTTGAAATGCAGTGTAAATT 59.462 30.769 0.00 0.00 44.52 1.82
289 290 6.047870 TGCAAACTTGAAATGCAGTGTAAAT 58.952 32.000 0.00 0.00 44.52 1.40
290 291 5.414360 TGCAAACTTGAAATGCAGTGTAAA 58.586 33.333 0.00 0.00 44.52 2.01
291 292 5.003692 TGCAAACTTGAAATGCAGTGTAA 57.996 34.783 0.00 0.00 44.52 2.41
292 293 4.645762 TGCAAACTTGAAATGCAGTGTA 57.354 36.364 0.00 0.00 44.52 2.90
293 294 3.523606 TGCAAACTTGAAATGCAGTGT 57.476 38.095 0.00 0.00 44.52 3.55
300 301 6.576185 AGAACACTCATTGCAAACTTGAAAT 58.424 32.000 1.71 0.00 36.88 2.17
301 302 5.964758 AGAACACTCATTGCAAACTTGAAA 58.035 33.333 1.71 0.00 0.00 2.69
302 303 5.581126 AGAACACTCATTGCAAACTTGAA 57.419 34.783 1.71 0.00 0.00 2.69
303 304 5.581126 AAGAACACTCATTGCAAACTTGA 57.419 34.783 1.71 1.59 0.00 3.02
304 305 7.935338 ATTAAGAACACTCATTGCAAACTTG 57.065 32.000 1.71 0.00 0.00 3.16
305 306 8.947055 AAATTAAGAACACTCATTGCAAACTT 57.053 26.923 1.71 2.60 0.00 2.66
306 307 9.683069 CTAAATTAAGAACACTCATTGCAAACT 57.317 29.630 1.71 0.00 0.00 2.66
307 308 9.463443 ACTAAATTAAGAACACTCATTGCAAAC 57.537 29.630 1.71 0.00 0.00 2.93
308 309 9.462174 CACTAAATTAAGAACACTCATTGCAAA 57.538 29.630 1.71 0.00 0.00 3.68
309 310 7.594758 GCACTAAATTAAGAACACTCATTGCAA 59.405 33.333 0.00 0.00 0.00 4.08
310 311 7.040478 AGCACTAAATTAAGAACACTCATTGCA 60.040 33.333 0.00 0.00 0.00 4.08
311 312 7.308435 AGCACTAAATTAAGAACACTCATTGC 58.692 34.615 0.00 0.00 0.00 3.56
312 313 9.683069 AAAGCACTAAATTAAGAACACTCATTG 57.317 29.630 0.00 0.00 0.00 2.82
313 314 9.683069 CAAAGCACTAAATTAAGAACACTCATT 57.317 29.630 0.00 0.00 0.00 2.57
314 315 8.299570 CCAAAGCACTAAATTAAGAACACTCAT 58.700 33.333 0.00 0.00 0.00 2.90
315 316 7.284489 ACCAAAGCACTAAATTAAGAACACTCA 59.716 33.333 0.00 0.00 0.00 3.41
316 317 7.649057 ACCAAAGCACTAAATTAAGAACACTC 58.351 34.615 0.00 0.00 0.00 3.51
317 318 7.502561 AGACCAAAGCACTAAATTAAGAACACT 59.497 33.333 0.00 0.00 0.00 3.55
318 319 7.649057 AGACCAAAGCACTAAATTAAGAACAC 58.351 34.615 0.00 0.00 0.00 3.32
319 320 7.817418 AGACCAAAGCACTAAATTAAGAACA 57.183 32.000 0.00 0.00 0.00 3.18
320 321 9.989869 GATAGACCAAAGCACTAAATTAAGAAC 57.010 33.333 0.00 0.00 0.00 3.01
321 322 9.733556 TGATAGACCAAAGCACTAAATTAAGAA 57.266 29.630 0.00 0.00 0.00 2.52
322 323 9.733556 TTGATAGACCAAAGCACTAAATTAAGA 57.266 29.630 0.00 0.00 0.00 2.10
325 326 9.290988 TGTTTGATAGACCAAAGCACTAAATTA 57.709 29.630 0.00 0.00 36.78 1.40
326 327 8.177119 TGTTTGATAGACCAAAGCACTAAATT 57.823 30.769 0.00 0.00 36.78 1.82
327 328 7.759489 TGTTTGATAGACCAAAGCACTAAAT 57.241 32.000 0.00 0.00 36.78 1.40
328 329 7.575414 TTGTTTGATAGACCAAAGCACTAAA 57.425 32.000 0.00 0.00 36.78 1.85
329 330 7.759489 ATTGTTTGATAGACCAAAGCACTAA 57.241 32.000 0.00 0.00 36.78 2.24
330 331 8.856153 TTATTGTTTGATAGACCAAAGCACTA 57.144 30.769 0.00 0.00 36.78 2.74
331 332 7.759489 TTATTGTTTGATAGACCAAAGCACT 57.241 32.000 0.00 0.00 36.78 4.40
332 333 8.810652 TTTTATTGTTTGATAGACCAAAGCAC 57.189 30.769 0.00 0.00 36.78 4.40
357 358 8.926710 GCATGAGTATTACGCTAGAATATGTTT 58.073 33.333 0.00 0.00 0.00 2.83
358 359 7.273598 CGCATGAGTATTACGCTAGAATATGTT 59.726 37.037 0.00 0.00 0.00 2.71
359 360 6.747739 CGCATGAGTATTACGCTAGAATATGT 59.252 38.462 0.00 0.00 0.00 2.29
360 361 6.967199 TCGCATGAGTATTACGCTAGAATATG 59.033 38.462 0.00 0.00 0.00 1.78
361 362 7.085052 TCGCATGAGTATTACGCTAGAATAT 57.915 36.000 0.00 0.00 0.00 1.28
362 363 6.490566 TCGCATGAGTATTACGCTAGAATA 57.509 37.500 0.00 0.00 0.00 1.75
363 364 5.372547 TCGCATGAGTATTACGCTAGAAT 57.627 39.130 0.00 0.00 0.00 2.40
364 365 4.823790 TCGCATGAGTATTACGCTAGAA 57.176 40.909 0.00 0.00 0.00 2.10
365 366 4.823790 TTCGCATGAGTATTACGCTAGA 57.176 40.909 0.00 0.00 0.00 2.43
366 367 5.459107 ACTTTTCGCATGAGTATTACGCTAG 59.541 40.000 0.00 0.00 0.00 3.42
367 368 5.345702 ACTTTTCGCATGAGTATTACGCTA 58.654 37.500 0.00 0.00 0.00 4.26
368 369 4.181578 ACTTTTCGCATGAGTATTACGCT 58.818 39.130 0.00 0.00 0.00 5.07
369 370 4.516092 ACTTTTCGCATGAGTATTACGC 57.484 40.909 0.00 0.00 0.00 4.42
370 371 6.994248 GAAACTTTTCGCATGAGTATTACG 57.006 37.500 0.00 0.00 0.00 3.18
384 385 1.978782 CATGCCTTCGCGAAACTTTTC 59.021 47.619 23.54 8.55 38.08 2.29
385 386 1.606668 TCATGCCTTCGCGAAACTTTT 59.393 42.857 23.54 4.14 38.08 2.27
386 387 1.069227 GTCATGCCTTCGCGAAACTTT 60.069 47.619 23.54 5.62 38.08 2.66
387 388 0.517316 GTCATGCCTTCGCGAAACTT 59.483 50.000 23.54 12.80 38.08 2.66
388 389 0.320771 AGTCATGCCTTCGCGAAACT 60.321 50.000 23.54 18.34 38.08 2.66
389 390 0.517316 AAGTCATGCCTTCGCGAAAC 59.483 50.000 23.54 17.75 38.08 2.78
390 391 0.796312 GAAGTCATGCCTTCGCGAAA 59.204 50.000 23.54 8.74 38.08 3.46
391 392 1.019278 GGAAGTCATGCCTTCGCGAA 61.019 55.000 22.01 22.01 41.44 4.70
392 393 1.447838 GGAAGTCATGCCTTCGCGA 60.448 57.895 3.71 3.71 41.44 5.87
393 394 1.448540 AGGAAGTCATGCCTTCGCG 60.449 57.895 10.19 0.00 41.44 5.87
394 395 1.372087 CCAGGAAGTCATGCCTTCGC 61.372 60.000 10.19 4.04 41.44 4.70
395 396 0.036010 ACCAGGAAGTCATGCCTTCG 60.036 55.000 10.19 0.00 41.44 3.79
396 397 3.567478 ATACCAGGAAGTCATGCCTTC 57.433 47.619 7.98 7.98 40.11 3.46
397 398 3.525199 AGAATACCAGGAAGTCATGCCTT 59.475 43.478 0.00 0.00 30.41 4.35
398 399 3.118112 CAGAATACCAGGAAGTCATGCCT 60.118 47.826 0.00 0.00 33.99 4.75
399 400 3.209410 CAGAATACCAGGAAGTCATGCC 58.791 50.000 0.00 0.00 0.00 4.40
400 401 3.624861 CACAGAATACCAGGAAGTCATGC 59.375 47.826 0.00 0.00 0.00 4.06
401 402 3.624861 GCACAGAATACCAGGAAGTCATG 59.375 47.826 0.00 0.00 0.00 3.07
402 403 3.264193 TGCACAGAATACCAGGAAGTCAT 59.736 43.478 0.00 0.00 0.00 3.06
403 404 2.637382 TGCACAGAATACCAGGAAGTCA 59.363 45.455 0.00 0.00 0.00 3.41
404 405 3.334583 TGCACAGAATACCAGGAAGTC 57.665 47.619 0.00 0.00 0.00 3.01
405 406 3.788227 TTGCACAGAATACCAGGAAGT 57.212 42.857 0.00 0.00 0.00 3.01
406 407 5.649782 ATTTTGCACAGAATACCAGGAAG 57.350 39.130 0.00 0.00 0.00 3.46
407 408 6.348950 CGTTATTTTGCACAGAATACCAGGAA 60.349 38.462 0.00 0.00 0.00 3.36
408 409 5.123186 CGTTATTTTGCACAGAATACCAGGA 59.877 40.000 0.00 0.00 0.00 3.86
409 410 5.123186 TCGTTATTTTGCACAGAATACCAGG 59.877 40.000 0.00 0.00 0.00 4.45
410 411 6.176975 TCGTTATTTTGCACAGAATACCAG 57.823 37.500 0.00 0.00 0.00 4.00
411 412 6.561737 TTCGTTATTTTGCACAGAATACCA 57.438 33.333 0.00 0.00 0.00 3.25
412 413 7.044966 CGATTTCGTTATTTTGCACAGAATACC 60.045 37.037 0.00 0.00 34.11 2.73
413 414 7.044966 CCGATTTCGTTATTTTGCACAGAATAC 60.045 37.037 0.00 0.00 37.74 1.89
414 415 6.964370 CCGATTTCGTTATTTTGCACAGAATA 59.036 34.615 0.00 0.00 37.74 1.75
415 416 5.799936 CCGATTTCGTTATTTTGCACAGAAT 59.200 36.000 0.00 0.00 37.74 2.40
416 417 5.150683 CCGATTTCGTTATTTTGCACAGAA 58.849 37.500 0.00 0.00 37.74 3.02
417 418 4.214545 ACCGATTTCGTTATTTTGCACAGA 59.785 37.500 0.00 0.00 37.74 3.41
418 419 4.472286 ACCGATTTCGTTATTTTGCACAG 58.528 39.130 0.00 0.00 37.74 3.66
419 420 4.491234 ACCGATTTCGTTATTTTGCACA 57.509 36.364 0.00 0.00 37.74 4.57
420 421 5.624292 AGTACCGATTTCGTTATTTTGCAC 58.376 37.500 0.00 0.00 37.74 4.57
421 422 5.163834 GGAGTACCGATTTCGTTATTTTGCA 60.164 40.000 0.00 0.00 37.74 4.08
422 423 5.064325 AGGAGTACCGATTTCGTTATTTTGC 59.936 40.000 0.00 0.00 41.83 3.68
423 424 6.657836 AGGAGTACCGATTTCGTTATTTTG 57.342 37.500 0.00 0.00 41.83 2.44
424 425 7.550712 ACTAGGAGTACCGATTTCGTTATTTT 58.449 34.615 0.00 0.00 41.83 1.82
425 426 7.105241 ACTAGGAGTACCGATTTCGTTATTT 57.895 36.000 0.00 0.00 41.83 1.40
426 427 6.705863 ACTAGGAGTACCGATTTCGTTATT 57.294 37.500 0.00 0.00 41.83 1.40
427 428 7.992754 ATACTAGGAGTACCGATTTCGTTAT 57.007 36.000 0.00 0.00 41.83 1.89
428 429 8.902540 TTATACTAGGAGTACCGATTTCGTTA 57.097 34.615 0.00 0.00 41.83 3.18
429 430 7.807977 TTATACTAGGAGTACCGATTTCGTT 57.192 36.000 0.00 0.00 41.83 3.85
430 431 7.807977 TTTATACTAGGAGTACCGATTTCGT 57.192 36.000 0.00 0.00 41.83 3.85
455 456 9.691362 GACCAAAACATGTGAATACTAACATTT 57.309 29.630 0.00 0.00 34.81 2.32
456 457 9.077885 AGACCAAAACATGTGAATACTAACATT 57.922 29.630 0.00 0.00 34.81 2.71
457 458 8.635765 AGACCAAAACATGTGAATACTAACAT 57.364 30.769 0.00 0.00 37.50 2.71
458 459 8.349245 CAAGACCAAAACATGTGAATACTAACA 58.651 33.333 0.00 0.00 0.00 2.41
459 460 7.326063 GCAAGACCAAAACATGTGAATACTAAC 59.674 37.037 0.00 0.00 0.00 2.34
460 461 7.013750 TGCAAGACCAAAACATGTGAATACTAA 59.986 33.333 0.00 0.00 0.00 2.24
461 462 6.488344 TGCAAGACCAAAACATGTGAATACTA 59.512 34.615 0.00 0.00 0.00 1.82
462 463 5.301551 TGCAAGACCAAAACATGTGAATACT 59.698 36.000 0.00 0.00 0.00 2.12
463 464 5.527951 TGCAAGACCAAAACATGTGAATAC 58.472 37.500 0.00 0.00 0.00 1.89
464 465 5.781210 TGCAAGACCAAAACATGTGAATA 57.219 34.783 0.00 0.00 0.00 1.75
465 466 4.669206 TGCAAGACCAAAACATGTGAAT 57.331 36.364 0.00 0.00 0.00 2.57
466 467 4.462508 TTGCAAGACCAAAACATGTGAA 57.537 36.364 0.00 0.00 0.00 3.18
467 468 4.669206 ATTGCAAGACCAAAACATGTGA 57.331 36.364 4.94 0.00 0.00 3.58
468 469 5.738118 AAATTGCAAGACCAAAACATGTG 57.262 34.783 4.94 0.00 0.00 3.21
469 470 6.121613 CAAAATTGCAAGACCAAAACATGT 57.878 33.333 4.94 0.00 0.00 3.21
498 499 7.608376 TGAATGACATCCGTGGTATTCTAAAAA 59.392 33.333 0.00 0.00 35.05 1.94
499 500 7.106890 TGAATGACATCCGTGGTATTCTAAAA 58.893 34.615 0.00 0.00 35.05 1.52
500 501 6.645306 TGAATGACATCCGTGGTATTCTAAA 58.355 36.000 0.00 0.00 35.05 1.85
501 502 6.228616 TGAATGACATCCGTGGTATTCTAA 57.771 37.500 0.00 0.00 35.05 2.10
502 503 5.862678 TGAATGACATCCGTGGTATTCTA 57.137 39.130 0.00 0.00 35.05 2.10
503 504 4.753516 TGAATGACATCCGTGGTATTCT 57.246 40.909 0.00 0.00 35.05 2.40
504 505 5.049405 GGAATGAATGACATCCGTGGTATTC 60.049 44.000 0.00 0.00 38.38 1.75
505 506 4.821805 GGAATGAATGACATCCGTGGTATT 59.178 41.667 0.00 0.00 38.38 1.89
506 507 4.389374 GGAATGAATGACATCCGTGGTAT 58.611 43.478 0.00 0.00 38.38 2.73
507 508 3.433031 GGGAATGAATGACATCCGTGGTA 60.433 47.826 0.00 0.00 38.38 3.25
508 509 2.643551 GGAATGAATGACATCCGTGGT 58.356 47.619 0.00 0.00 38.38 4.16
509 510 1.949525 GGGAATGAATGACATCCGTGG 59.050 52.381 0.00 0.00 38.38 4.94
510 511 1.599071 CGGGAATGAATGACATCCGTG 59.401 52.381 3.47 0.00 39.75 4.94
511 512 1.484653 TCGGGAATGAATGACATCCGT 59.515 47.619 9.91 0.00 42.85 4.69
512 513 2.238942 TCGGGAATGAATGACATCCG 57.761 50.000 4.96 4.96 43.31 4.18
513 514 3.947834 AGTTTCGGGAATGAATGACATCC 59.052 43.478 0.00 0.00 38.38 3.51
514 515 5.567138 AAGTTTCGGGAATGAATGACATC 57.433 39.130 0.00 0.00 38.38 3.06
515 516 5.982890 AAAGTTTCGGGAATGAATGACAT 57.017 34.783 0.00 0.00 41.45 3.06
516 517 5.300539 TGAAAAGTTTCGGGAATGAATGACA 59.699 36.000 0.00 0.00 40.01 3.58
517 518 5.629435 GTGAAAAGTTTCGGGAATGAATGAC 59.371 40.000 0.00 0.00 40.01 3.06
518 519 5.300539 TGTGAAAAGTTTCGGGAATGAATGA 59.699 36.000 0.00 0.00 40.01 2.57
519 520 5.527951 TGTGAAAAGTTTCGGGAATGAATG 58.472 37.500 0.00 0.00 40.01 2.67
520 521 5.782893 TGTGAAAAGTTTCGGGAATGAAT 57.217 34.783 0.00 0.00 40.01 2.57
521 522 5.300539 TCATGTGAAAAGTTTCGGGAATGAA 59.699 36.000 0.00 0.00 40.01 2.57
522 523 4.824537 TCATGTGAAAAGTTTCGGGAATGA 59.175 37.500 0.00 3.80 40.01 2.57
523 524 5.119931 TCATGTGAAAAGTTTCGGGAATG 57.880 39.130 0.00 1.88 40.01 2.67
524 525 4.218417 CCTCATGTGAAAAGTTTCGGGAAT 59.782 41.667 0.00 0.00 40.01 3.01
525 526 3.568007 CCTCATGTGAAAAGTTTCGGGAA 59.432 43.478 0.00 0.00 40.01 3.97
526 527 3.146066 CCTCATGTGAAAAGTTTCGGGA 58.854 45.455 0.00 0.00 40.01 5.14
527 528 2.228822 CCCTCATGTGAAAAGTTTCGGG 59.771 50.000 0.00 0.00 40.01 5.14
528 529 2.351738 GCCCTCATGTGAAAAGTTTCGG 60.352 50.000 0.00 0.00 40.01 4.30
529 530 2.293122 TGCCCTCATGTGAAAAGTTTCG 59.707 45.455 0.00 0.00 40.01 3.46
530 531 4.301628 CTTGCCCTCATGTGAAAAGTTTC 58.698 43.478 0.00 0.00 37.69 2.78
531 532 3.493176 GCTTGCCCTCATGTGAAAAGTTT 60.493 43.478 0.00 0.00 0.00 2.66
532 533 2.036346 GCTTGCCCTCATGTGAAAAGTT 59.964 45.455 0.00 0.00 0.00 2.66
533 534 1.615392 GCTTGCCCTCATGTGAAAAGT 59.385 47.619 0.00 0.00 0.00 2.66
534 535 1.067354 GGCTTGCCCTCATGTGAAAAG 60.067 52.381 0.00 0.00 0.00 2.27
535 536 0.968405 GGCTTGCCCTCATGTGAAAA 59.032 50.000 0.00 0.00 0.00 2.29
536 537 0.178967 TGGCTTGCCCTCATGTGAAA 60.179 50.000 9.35 0.00 0.00 2.69
537 538 0.178967 TTGGCTTGCCCTCATGTGAA 60.179 50.000 9.35 0.00 0.00 3.18
538 539 0.040058 ATTGGCTTGCCCTCATGTGA 59.960 50.000 9.35 0.00 0.00 3.58
539 540 0.174845 CATTGGCTTGCCCTCATGTG 59.825 55.000 9.35 0.00 0.00 3.21
540 541 0.251922 ACATTGGCTTGCCCTCATGT 60.252 50.000 9.35 11.32 34.94 3.21
541 542 1.766494 TACATTGGCTTGCCCTCATG 58.234 50.000 9.35 10.74 33.52 3.07
542 543 2.176364 AGATACATTGGCTTGCCCTCAT 59.824 45.455 9.35 0.00 0.00 2.90
543 544 1.565759 AGATACATTGGCTTGCCCTCA 59.434 47.619 9.35 0.00 0.00 3.86
544 545 2.355010 AGATACATTGGCTTGCCCTC 57.645 50.000 9.35 0.00 0.00 4.30
545 546 3.951563 TTAGATACATTGGCTTGCCCT 57.048 42.857 9.35 0.00 0.00 5.19
546 547 4.202151 CCTTTTAGATACATTGGCTTGCCC 60.202 45.833 9.35 0.00 0.00 5.36
547 548 4.202151 CCCTTTTAGATACATTGGCTTGCC 60.202 45.833 4.43 4.43 0.00 4.52
548 549 4.202151 CCCCTTTTAGATACATTGGCTTGC 60.202 45.833 0.00 0.00 0.00 4.01
549 550 4.956075 ACCCCTTTTAGATACATTGGCTTG 59.044 41.667 0.00 0.00 0.00 4.01
550 551 5.206905 ACCCCTTTTAGATACATTGGCTT 57.793 39.130 0.00 0.00 0.00 4.35
551 552 4.881157 ACCCCTTTTAGATACATTGGCT 57.119 40.909 0.00 0.00 0.00 4.75
552 553 7.597288 ATTAACCCCTTTTAGATACATTGGC 57.403 36.000 0.00 0.00 0.00 4.52
568 569 4.295201 AGGGCAAAAGGATAATTAACCCC 58.705 43.478 8.09 2.43 35.29 4.95
627 628 2.224018 GGGCAAAACTGAGCACAATTCA 60.224 45.455 0.00 0.00 33.42 2.57
774 777 2.765969 CTGGGTCCCACAAGCCAT 59.234 61.111 6.47 0.00 45.28 4.40
852 870 2.910479 TCTGTCGCCGTGGTCACT 60.910 61.111 0.00 0.00 0.00 3.41
1089 1600 1.838073 AAACCCTCCGATCAACGCCT 61.838 55.000 0.00 0.00 41.07 5.52
1142 1653 1.499056 CCATTCTCACTGCACACGC 59.501 57.895 0.00 0.00 39.24 5.34
1152 1663 2.438021 CCCGATTCTTACCCCATTCTCA 59.562 50.000 0.00 0.00 0.00 3.27
1278 1815 5.311265 TCTTGCAGTTCATTCATCAGAGTT 58.689 37.500 0.00 0.00 0.00 3.01
1444 1988 5.971763 TGCAAATGGGTATTGGTATTCAAC 58.028 37.500 0.00 0.00 38.31 3.18
1472 2026 4.841246 ACCATACCTACAAATGCCCAAAAA 59.159 37.500 0.00 0.00 0.00 1.94
1499 2053 4.991153 TTTCAACATTACAACCAGTGCA 57.009 36.364 0.00 0.00 0.00 4.57
1611 2215 9.358872 ACTTCTTCTCTTTTTGTTTCAACATTC 57.641 29.630 0.00 0.00 38.95 2.67
1800 2408 3.974719 TGGGCCTAATTGAATGCAGTTA 58.025 40.909 4.53 0.00 0.00 2.24
2023 2692 0.746063 CTCTACCAGAGCTGAGGCAG 59.254 60.000 0.00 0.00 41.70 4.85
2178 2954 2.604139 CCCTAAACACCACAAACCCAT 58.396 47.619 0.00 0.00 0.00 4.00
2322 3253 6.282930 CAAAACAATGGAAAACCACTCTCAT 58.717 36.000 0.00 0.00 0.00 2.90
2434 3365 2.270352 TCCTAAACCAAGTGCCACTG 57.730 50.000 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.