Multiple sequence alignment - TraesCS3A01G535600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G535600 chr3A 100.000 2849 0 0 1 2849 747001086 747003934 0.000000e+00 5262.0
1 TraesCS3A01G535600 chr3A 94.186 172 9 1 2605 2775 98267751 98267922 7.830000e-66 261.0
2 TraesCS3A01G535600 chr3A 98.113 53 0 1 1561 1613 747002602 747002653 1.090000e-14 91.6
3 TraesCS3A01G535600 chr3A 98.113 53 0 1 1517 1568 747002646 747002698 1.090000e-14 91.6
4 TraesCS3A01G535600 chr3D 93.323 1273 56 9 1577 2846 612312034 612313280 0.000000e+00 1853.0
5 TraesCS3A01G535600 chr3D 94.286 210 11 1 1244 1452 612311715 612311924 1.270000e-83 320.0
6 TraesCS3A01G535600 chr3D 92.199 141 10 1 759 899 612311058 612311197 6.230000e-47 198.0
7 TraesCS3A01G535600 chr3D 89.831 118 11 1 509 625 612310832 612310949 1.770000e-32 150.0
8 TraesCS3A01G535600 chr3D 94.382 89 2 2 1054 1142 612311397 612311482 1.780000e-27 134.0
9 TraesCS3A01G535600 chr3D 89.231 65 7 0 981 1045 612311294 612311358 6.540000e-12 82.4
10 TraesCS3A01G535600 chr3B 90.659 1274 78 27 1597 2849 826652159 826650906 0.000000e+00 1655.0
11 TraesCS3A01G535600 chr3B 76.488 689 56 57 515 1140 826653338 826652693 7.770000e-71 278.0
12 TraesCS3A01G535600 chr3B 84.815 270 32 4 1239 1499 826652482 826652213 2.180000e-66 263.0
13 TraesCS3A01G535600 chr3B 90.323 62 6 0 1147 1208 826652614 826652553 6.540000e-12 82.4
14 TraesCS3A01G535600 chr3B 100.000 29 0 0 486 514 826653811 826653783 1.000000e-03 54.7
15 TraesCS3A01G535600 chr6B 79.091 880 101 43 1948 2763 672368170 672367310 1.940000e-146 529.0
16 TraesCS3A01G535600 chr6B 79.743 311 39 13 2090 2378 672407164 672406856 1.340000e-48 204.0
17 TraesCS3A01G535600 chr6D 83.085 603 66 19 2204 2779 445767610 445767017 1.510000e-142 516.0
18 TraesCS3A01G535600 chr6D 78.938 546 67 28 1919 2424 445776207 445775670 7.610000e-86 327.0
19 TraesCS3A01G535600 chr7B 95.633 229 10 0 1 229 612668033 612667805 4.480000e-98 368.0
20 TraesCS3A01G535600 chr1B 94.714 227 12 0 3 229 643393856 643394082 1.260000e-93 353.0
21 TraesCS3A01G535600 chr6A 88.672 256 24 3 2210 2461 592440304 592440050 9.910000e-80 307.0
22 TraesCS3A01G535600 chr6A 94.186 172 9 1 2605 2775 590629520 590629691 7.830000e-66 261.0
23 TraesCS3A01G535600 chr6A 78.492 358 34 22 1958 2279 592455925 592455575 8.050000e-46 195.0
24 TraesCS3A01G535600 chr7A 94.186 172 9 1 2605 2775 179016883 179016712 7.830000e-66 261.0
25 TraesCS3A01G535600 chr7A 94.186 172 9 1 2605 2775 630566292 630566121 7.830000e-66 261.0
26 TraesCS3A01G535600 chr7A 94.152 171 9 1 2605 2774 677415503 677415333 2.820000e-65 259.0
27 TraesCS3A01G535600 chr7A 86.777 121 9 4 2730 2849 72961396 72961510 8.280000e-26 128.0
28 TraesCS3A01G535600 chr5A 94.186 172 9 1 2605 2775 114309795 114309966 7.830000e-66 261.0
29 TraesCS3A01G535600 chr5A 94.186 172 9 1 2605 2775 541155916 541156087 7.830000e-66 261.0
30 TraesCS3A01G535600 chr5A 89.610 154 6 1 69 222 706317616 706317759 1.350000e-43 187.0
31 TraesCS3A01G535600 chr4A 94.186 172 9 1 2605 2775 51774224 51774053 7.830000e-66 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G535600 chr3A 747001086 747003934 2848 False 1815.066667 5262 98.742000 1 2849 3 chr3A.!!$F2 2848
1 TraesCS3A01G535600 chr3D 612310832 612313280 2448 False 456.233333 1853 92.208667 509 2846 6 chr3D.!!$F1 2337
2 TraesCS3A01G535600 chr3B 826650906 826653811 2905 True 466.620000 1655 88.457000 486 2849 5 chr3B.!!$R1 2363
3 TraesCS3A01G535600 chr6B 672367310 672368170 860 True 529.000000 529 79.091000 1948 2763 1 chr6B.!!$R1 815
4 TraesCS3A01G535600 chr6D 445767017 445767610 593 True 516.000000 516 83.085000 2204 2779 1 chr6D.!!$R1 575
5 TraesCS3A01G535600 chr6D 445775670 445776207 537 True 327.000000 327 78.938000 1919 2424 1 chr6D.!!$R2 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.035176 TACAAAACGCCCCGTAAGCT 59.965 50.0 0.0 0.0 39.99 3.74 F
133 134 0.035820 TAAGTGCCGGCTAACAAGGG 60.036 55.0 29.7 0.0 0.00 3.95 F
374 375 0.036765 TGGGCTACACATTGACGGAC 60.037 55.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 2341 0.321919 GATGGCTGTGCTCCTGTCAA 60.322 55.0 0.0 0.0 29.93 3.18 R
1574 2350 0.604780 ATCTATGGCGATGGCTGTGC 60.605 55.0 0.0 0.0 39.81 4.57 R
2279 3126 0.606096 TTGCCTCTTCCGTCGAATGA 59.394 50.0 0.0 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.880901 TCAAAAGGCCTCTAAATCTCAAGT 58.119 37.500 5.23 0.00 0.00 3.16
24 25 5.707298 TCAAAAGGCCTCTAAATCTCAAGTG 59.293 40.000 5.23 0.00 0.00 3.16
25 26 3.922171 AGGCCTCTAAATCTCAAGTGG 57.078 47.619 0.00 0.00 0.00 4.00
26 27 3.185455 AGGCCTCTAAATCTCAAGTGGT 58.815 45.455 0.00 0.00 0.00 4.16
27 28 3.054802 AGGCCTCTAAATCTCAAGTGGTG 60.055 47.826 0.00 0.00 0.00 4.17
28 29 3.307762 GGCCTCTAAATCTCAAGTGGTGT 60.308 47.826 0.00 0.00 0.00 4.16
29 30 4.327680 GCCTCTAAATCTCAAGTGGTGTT 58.672 43.478 0.00 0.00 0.00 3.32
30 31 4.762251 GCCTCTAAATCTCAAGTGGTGTTT 59.238 41.667 0.00 0.00 0.00 2.83
31 32 5.241728 GCCTCTAAATCTCAAGTGGTGTTTT 59.758 40.000 0.00 0.00 0.00 2.43
32 33 6.430000 GCCTCTAAATCTCAAGTGGTGTTTTA 59.570 38.462 0.00 0.00 0.00 1.52
33 34 7.573283 GCCTCTAAATCTCAAGTGGTGTTTTAC 60.573 40.741 0.00 0.00 0.00 2.01
34 35 7.444183 CCTCTAAATCTCAAGTGGTGTTTTACA 59.556 37.037 0.00 0.00 0.00 2.41
35 36 8.740123 TCTAAATCTCAAGTGGTGTTTTACAA 57.260 30.769 0.00 0.00 0.00 2.41
36 37 9.179909 TCTAAATCTCAAGTGGTGTTTTACAAA 57.820 29.630 0.00 0.00 0.00 2.83
37 38 9.796120 CTAAATCTCAAGTGGTGTTTTACAAAA 57.204 29.630 0.00 0.00 0.00 2.44
38 39 8.474006 AAATCTCAAGTGGTGTTTTACAAAAC 57.526 30.769 10.03 10.03 46.40 2.43
45 46 3.942796 GTTTTACAAAACGCCCCGT 57.057 47.368 2.07 0.00 43.97 5.28
47 48 3.346430 GTTTTACAAAACGCCCCGTAA 57.654 42.857 2.07 0.00 39.99 3.18
48 49 3.299162 GTTTTACAAAACGCCCCGTAAG 58.701 45.455 2.07 0.00 39.99 2.34
49 50 0.873721 TTACAAAACGCCCCGTAAGC 59.126 50.000 0.00 0.00 39.99 3.09
50 51 0.035176 TACAAAACGCCCCGTAAGCT 59.965 50.000 0.00 0.00 39.99 3.74
51 52 0.035176 ACAAAACGCCCCGTAAGCTA 59.965 50.000 0.00 0.00 39.99 3.32
52 53 1.339342 ACAAAACGCCCCGTAAGCTAT 60.339 47.619 0.00 0.00 39.99 2.97
53 54 1.741145 CAAAACGCCCCGTAAGCTATT 59.259 47.619 0.00 0.00 39.99 1.73
54 55 2.937799 CAAAACGCCCCGTAAGCTATTA 59.062 45.455 0.00 0.00 39.99 0.98
55 56 2.229675 AACGCCCCGTAAGCTATTAC 57.770 50.000 0.00 0.00 39.99 1.89
56 57 1.113788 ACGCCCCGTAAGCTATTACA 58.886 50.000 0.00 0.00 41.22 2.41
57 58 1.690352 ACGCCCCGTAAGCTATTACAT 59.310 47.619 0.00 0.00 41.22 2.29
58 59 2.892852 ACGCCCCGTAAGCTATTACATA 59.107 45.455 0.00 0.00 41.22 2.29
59 60 3.512724 ACGCCCCGTAAGCTATTACATAT 59.487 43.478 0.00 0.00 41.22 1.78
60 61 4.020839 ACGCCCCGTAAGCTATTACATATT 60.021 41.667 0.00 0.00 41.22 1.28
61 62 4.328983 CGCCCCGTAAGCTATTACATATTG 59.671 45.833 0.00 0.00 41.22 1.90
62 63 4.094442 GCCCCGTAAGCTATTACATATTGC 59.906 45.833 0.00 0.00 41.22 3.56
63 64 5.488341 CCCCGTAAGCTATTACATATTGCT 58.512 41.667 0.00 0.00 41.22 3.91
64 65 5.351465 CCCCGTAAGCTATTACATATTGCTG 59.649 44.000 0.00 0.00 41.22 4.41
65 66 5.163854 CCCGTAAGCTATTACATATTGCTGC 60.164 44.000 0.00 0.00 41.22 5.25
66 67 5.408299 CCGTAAGCTATTACATATTGCTGCA 59.592 40.000 0.00 0.00 41.22 4.41
67 68 6.299604 CGTAAGCTATTACATATTGCTGCAC 58.700 40.000 0.00 0.00 41.22 4.57
68 69 6.146184 CGTAAGCTATTACATATTGCTGCACT 59.854 38.462 0.00 0.00 41.22 4.40
69 70 6.949352 AAGCTATTACATATTGCTGCACTT 57.051 33.333 0.00 0.00 33.96 3.16
70 71 6.949352 AGCTATTACATATTGCTGCACTTT 57.051 33.333 0.00 0.00 32.32 2.66
71 72 6.963796 AGCTATTACATATTGCTGCACTTTC 58.036 36.000 0.00 0.00 32.32 2.62
72 73 6.769822 AGCTATTACATATTGCTGCACTTTCT 59.230 34.615 0.00 0.00 32.32 2.52
73 74 7.041508 AGCTATTACATATTGCTGCACTTTCTC 60.042 37.037 0.00 0.00 32.32 2.87
74 75 7.254898 GCTATTACATATTGCTGCACTTTCTCA 60.255 37.037 0.00 0.00 0.00 3.27
75 76 4.959596 ACATATTGCTGCACTTTCTCAG 57.040 40.909 0.00 0.00 0.00 3.35
76 77 4.582869 ACATATTGCTGCACTTTCTCAGA 58.417 39.130 0.00 0.00 32.26 3.27
77 78 5.005740 ACATATTGCTGCACTTTCTCAGAA 58.994 37.500 0.00 0.00 32.26 3.02
78 79 5.651139 ACATATTGCTGCACTTTCTCAGAAT 59.349 36.000 0.00 0.00 32.26 2.40
79 80 3.909776 TTGCTGCACTTTCTCAGAATG 57.090 42.857 0.00 0.00 32.26 2.67
80 81 1.538512 TGCTGCACTTTCTCAGAATGC 59.461 47.619 6.10 6.10 34.76 3.56
81 82 1.135460 GCTGCACTTTCTCAGAATGCC 60.135 52.381 9.96 0.00 35.37 4.40
82 83 2.156917 CTGCACTTTCTCAGAATGCCA 58.843 47.619 9.96 3.18 35.37 4.92
83 84 2.156917 TGCACTTTCTCAGAATGCCAG 58.843 47.619 9.96 0.00 35.37 4.85
84 85 1.135460 GCACTTTCTCAGAATGCCAGC 60.135 52.381 1.97 0.61 34.76 4.85
85 86 2.156917 CACTTTCTCAGAATGCCAGCA 58.843 47.619 0.14 0.00 34.76 4.41
86 87 2.555325 CACTTTCTCAGAATGCCAGCAA 59.445 45.455 0.00 0.00 34.76 3.91
87 88 3.192844 CACTTTCTCAGAATGCCAGCAAT 59.807 43.478 0.00 0.00 34.76 3.56
88 89 3.830755 ACTTTCTCAGAATGCCAGCAATT 59.169 39.130 0.00 0.00 34.76 2.32
89 90 5.012239 ACTTTCTCAGAATGCCAGCAATTA 58.988 37.500 0.00 0.00 34.76 1.40
90 91 5.477984 ACTTTCTCAGAATGCCAGCAATTAA 59.522 36.000 0.00 0.00 34.76 1.40
91 92 5.571784 TTCTCAGAATGCCAGCAATTAAG 57.428 39.130 0.00 0.00 34.76 1.85
92 93 3.379372 TCTCAGAATGCCAGCAATTAAGC 59.621 43.478 0.00 0.00 34.76 3.09
93 94 3.090790 TCAGAATGCCAGCAATTAAGCA 58.909 40.909 0.00 0.00 40.00 3.91
95 96 4.888823 TCAGAATGCCAGCAATTAAGCATA 59.111 37.500 0.00 0.00 44.87 3.14
96 97 5.537295 TCAGAATGCCAGCAATTAAGCATAT 59.463 36.000 0.00 0.00 44.87 1.78
97 98 6.041182 TCAGAATGCCAGCAATTAAGCATATT 59.959 34.615 0.00 0.00 44.87 1.28
98 99 6.704493 CAGAATGCCAGCAATTAAGCATATTT 59.296 34.615 0.00 0.00 44.87 1.40
99 100 7.225931 CAGAATGCCAGCAATTAAGCATATTTT 59.774 33.333 0.00 0.00 44.87 1.82
100 101 6.854496 ATGCCAGCAATTAAGCATATTTTG 57.146 33.333 0.00 0.00 43.85 2.44
101 102 5.117584 TGCCAGCAATTAAGCATATTTTGG 58.882 37.500 0.00 0.00 36.85 3.28
102 103 5.105023 TGCCAGCAATTAAGCATATTTTGGA 60.105 36.000 0.00 0.00 36.85 3.53
103 104 5.464389 GCCAGCAATTAAGCATATTTTGGAG 59.536 40.000 0.00 0.00 36.85 3.86
104 105 5.987347 CCAGCAATTAAGCATATTTTGGAGG 59.013 40.000 0.00 0.00 36.85 4.30
105 106 5.464389 CAGCAATTAAGCATATTTTGGAGGC 59.536 40.000 0.00 0.00 36.85 4.70
106 107 4.445385 GCAATTAAGCATATTTTGGAGGCG 59.555 41.667 0.00 0.00 0.00 5.52
107 108 5.591099 CAATTAAGCATATTTTGGAGGCGT 58.409 37.500 0.00 0.00 0.00 5.68
108 109 5.852282 ATTAAGCATATTTTGGAGGCGTT 57.148 34.783 0.00 0.00 0.00 4.84
109 110 3.782889 AAGCATATTTTGGAGGCGTTC 57.217 42.857 0.00 0.00 0.00 3.95
110 111 2.024414 AGCATATTTTGGAGGCGTTCC 58.976 47.619 1.61 1.61 46.98 3.62
111 112 2.024414 GCATATTTTGGAGGCGTTCCT 58.976 47.619 9.11 0.00 46.92 3.36
120 121 3.460648 AGGCGTTCCTCATAAGTGC 57.539 52.632 0.00 0.00 38.72 4.40
121 122 0.107654 AGGCGTTCCTCATAAGTGCC 60.108 55.000 0.00 0.00 38.72 5.01
122 123 1.429148 GGCGTTCCTCATAAGTGCCG 61.429 60.000 0.00 0.00 0.00 5.69
123 124 1.429148 GCGTTCCTCATAAGTGCCGG 61.429 60.000 0.00 0.00 0.00 6.13
124 125 1.429148 CGTTCCTCATAAGTGCCGGC 61.429 60.000 22.73 22.73 0.00 6.13
125 126 0.107654 GTTCCTCATAAGTGCCGGCT 60.108 55.000 29.70 10.43 0.00 5.52
126 127 1.138266 GTTCCTCATAAGTGCCGGCTA 59.862 52.381 29.70 12.68 0.00 3.93
127 128 1.491668 TCCTCATAAGTGCCGGCTAA 58.508 50.000 29.70 4.80 0.00 3.09
128 129 1.138266 TCCTCATAAGTGCCGGCTAAC 59.862 52.381 29.70 18.92 0.00 2.34
129 130 1.134521 CCTCATAAGTGCCGGCTAACA 60.135 52.381 29.70 11.04 0.00 2.41
130 131 2.627945 CTCATAAGTGCCGGCTAACAA 58.372 47.619 29.70 11.03 0.00 2.83
131 132 2.609459 CTCATAAGTGCCGGCTAACAAG 59.391 50.000 29.70 13.77 0.00 3.16
132 133 1.670811 CATAAGTGCCGGCTAACAAGG 59.329 52.381 29.70 8.65 0.00 3.61
133 134 0.035820 TAAGTGCCGGCTAACAAGGG 60.036 55.000 29.70 0.00 0.00 3.95
134 135 3.440415 GTGCCGGCTAACAAGGGC 61.440 66.667 29.70 0.00 45.76 5.19
135 136 4.733542 TGCCGGCTAACAAGGGCC 62.734 66.667 29.70 0.00 44.96 5.80
136 137 4.426313 GCCGGCTAACAAGGGCCT 62.426 66.667 22.15 0.00 39.67 5.19
137 138 2.355115 CCGGCTAACAAGGGCCTT 59.645 61.111 14.48 14.48 0.00 4.35
138 139 1.304134 CCGGCTAACAAGGGCCTTT 60.304 57.895 18.16 5.78 0.00 3.11
139 140 1.595093 CCGGCTAACAAGGGCCTTTG 61.595 60.000 24.95 24.95 0.00 2.77
140 141 0.608035 CGGCTAACAAGGGCCTTTGA 60.608 55.000 32.21 11.50 0.00 2.69
141 142 1.627864 GGCTAACAAGGGCCTTTGAA 58.372 50.000 32.21 18.51 0.00 2.69
142 143 1.546029 GGCTAACAAGGGCCTTTGAAG 59.454 52.381 32.21 26.09 0.00 3.02
153 154 2.134201 CCTTTGAAGGCGTTTTGTCC 57.866 50.000 0.00 0.00 39.76 4.02
154 155 1.407258 CCTTTGAAGGCGTTTTGTCCA 59.593 47.619 0.00 0.00 39.76 4.02
155 156 2.543653 CCTTTGAAGGCGTTTTGTCCAG 60.544 50.000 0.00 0.00 39.76 3.86
156 157 2.045561 TTGAAGGCGTTTTGTCCAGA 57.954 45.000 0.00 0.00 0.00 3.86
157 158 2.045561 TGAAGGCGTTTTGTCCAGAA 57.954 45.000 0.00 0.00 0.00 3.02
158 159 1.673920 TGAAGGCGTTTTGTCCAGAAC 59.326 47.619 0.00 0.00 0.00 3.01
161 162 4.914291 CGTTTTGTCCAGAACGCC 57.086 55.556 9.66 0.00 40.93 5.68
162 163 2.317230 CGTTTTGTCCAGAACGCCT 58.683 52.632 9.66 0.00 40.93 5.52
163 164 0.661020 CGTTTTGTCCAGAACGCCTT 59.339 50.000 9.66 0.00 40.93 4.35
164 165 1.064952 CGTTTTGTCCAGAACGCCTTT 59.935 47.619 9.66 0.00 40.93 3.11
165 166 2.288458 CGTTTTGTCCAGAACGCCTTTA 59.712 45.455 9.66 0.00 40.93 1.85
166 167 3.242804 CGTTTTGTCCAGAACGCCTTTAA 60.243 43.478 9.66 0.00 40.93 1.52
167 168 4.674475 GTTTTGTCCAGAACGCCTTTAAA 58.326 39.130 0.00 0.00 0.00 1.52
168 169 4.561735 TTTGTCCAGAACGCCTTTAAAG 57.438 40.909 8.32 8.32 0.00 1.85
170 171 1.810755 GTCCAGAACGCCTTTAAAGGG 59.189 52.381 30.83 23.20 46.56 3.95
171 172 1.700739 TCCAGAACGCCTTTAAAGGGA 59.299 47.619 30.83 17.14 46.56 4.20
172 173 2.084546 CCAGAACGCCTTTAAAGGGAG 58.915 52.381 30.83 17.67 46.56 4.30
173 174 2.084546 CAGAACGCCTTTAAAGGGAGG 58.915 52.381 30.83 11.14 46.56 4.30
174 175 1.703513 AGAACGCCTTTAAAGGGAGGT 59.296 47.619 30.83 15.18 46.56 3.85
175 176 2.908351 AGAACGCCTTTAAAGGGAGGTA 59.092 45.455 30.83 0.00 46.56 3.08
176 177 3.328637 AGAACGCCTTTAAAGGGAGGTAA 59.671 43.478 30.83 0.00 46.56 2.85
177 178 4.018688 AGAACGCCTTTAAAGGGAGGTAAT 60.019 41.667 30.83 6.61 46.56 1.89
178 179 3.882444 ACGCCTTTAAAGGGAGGTAATC 58.118 45.455 30.83 13.66 46.56 1.75
179 180 3.522343 ACGCCTTTAAAGGGAGGTAATCT 59.478 43.478 30.83 4.85 46.56 2.40
180 181 4.718276 ACGCCTTTAAAGGGAGGTAATCTA 59.282 41.667 30.83 0.00 46.56 1.98
181 182 5.190330 ACGCCTTTAAAGGGAGGTAATCTAA 59.810 40.000 30.83 0.00 46.56 2.10
182 183 5.758784 CGCCTTTAAAGGGAGGTAATCTAAG 59.241 44.000 30.83 5.38 46.56 2.18
183 184 6.062749 GCCTTTAAAGGGAGGTAATCTAAGG 58.937 44.000 30.83 5.46 46.56 2.69
184 185 6.062749 CCTTTAAAGGGAGGTAATCTAAGGC 58.937 44.000 24.39 0.00 42.66 4.35
185 186 6.353602 CCTTTAAAGGGAGGTAATCTAAGGCA 60.354 42.308 24.39 0.00 42.66 4.75
186 187 4.505324 AAAGGGAGGTAATCTAAGGCAC 57.495 45.455 0.00 0.00 0.00 5.01
212 213 5.385509 TTTATTGCCTTGTAGAAAGTGCC 57.614 39.130 0.00 0.00 0.00 5.01
213 214 2.656947 TTGCCTTGTAGAAAGTGCCT 57.343 45.000 0.00 0.00 0.00 4.75
214 215 2.185004 TGCCTTGTAGAAAGTGCCTC 57.815 50.000 0.00 0.00 0.00 4.70
215 216 1.699634 TGCCTTGTAGAAAGTGCCTCT 59.300 47.619 0.00 0.00 0.00 3.69
216 217 2.079925 GCCTTGTAGAAAGTGCCTCTG 58.920 52.381 0.00 0.00 0.00 3.35
217 218 2.551071 GCCTTGTAGAAAGTGCCTCTGT 60.551 50.000 0.00 0.00 0.00 3.41
218 219 3.744660 CCTTGTAGAAAGTGCCTCTGTT 58.255 45.455 0.00 0.00 0.00 3.16
219 220 4.137543 CCTTGTAGAAAGTGCCTCTGTTT 58.862 43.478 0.00 0.00 0.00 2.83
220 221 4.214332 CCTTGTAGAAAGTGCCTCTGTTTC 59.786 45.833 0.00 0.00 0.00 2.78
221 222 4.689612 TGTAGAAAGTGCCTCTGTTTCT 57.310 40.909 0.00 0.00 42.03 2.52
222 223 4.632153 TGTAGAAAGTGCCTCTGTTTCTC 58.368 43.478 0.01 0.00 40.28 2.87
223 224 4.345257 TGTAGAAAGTGCCTCTGTTTCTCT 59.655 41.667 0.01 0.00 40.28 3.10
224 225 5.538813 TGTAGAAAGTGCCTCTGTTTCTCTA 59.461 40.000 0.01 0.00 40.28 2.43
225 226 4.888917 AGAAAGTGCCTCTGTTTCTCTAC 58.111 43.478 0.00 0.00 36.03 2.59
226 227 3.686916 AAGTGCCTCTGTTTCTCTACC 57.313 47.619 0.00 0.00 0.00 3.18
227 228 1.546476 AGTGCCTCTGTTTCTCTACCG 59.454 52.381 0.00 0.00 0.00 4.02
228 229 1.272769 GTGCCTCTGTTTCTCTACCGT 59.727 52.381 0.00 0.00 0.00 4.83
229 230 2.490903 GTGCCTCTGTTTCTCTACCGTA 59.509 50.000 0.00 0.00 0.00 4.02
230 231 2.490903 TGCCTCTGTTTCTCTACCGTAC 59.509 50.000 0.00 0.00 0.00 3.67
231 232 2.477525 GCCTCTGTTTCTCTACCGTACG 60.478 54.545 8.69 8.69 0.00 3.67
232 233 2.746362 CCTCTGTTTCTCTACCGTACGT 59.254 50.000 15.21 5.08 0.00 3.57
233 234 3.425892 CCTCTGTTTCTCTACCGTACGTG 60.426 52.174 15.21 8.32 0.00 4.49
234 235 3.141398 TCTGTTTCTCTACCGTACGTGT 58.859 45.455 15.21 13.81 0.00 4.49
235 236 3.565482 TCTGTTTCTCTACCGTACGTGTT 59.435 43.478 15.21 0.31 0.00 3.32
236 237 3.631144 TGTTTCTCTACCGTACGTGTTG 58.369 45.455 15.21 12.28 0.00 3.33
237 238 3.066621 TGTTTCTCTACCGTACGTGTTGT 59.933 43.478 15.21 7.32 0.00 3.32
238 239 4.274705 TGTTTCTCTACCGTACGTGTTGTA 59.725 41.667 15.21 8.12 0.00 2.41
243 244 2.869233 ACCGTACGTGTTGTACTGTT 57.131 45.000 15.21 0.00 45.65 3.16
244 245 3.163630 ACCGTACGTGTTGTACTGTTT 57.836 42.857 15.21 0.00 45.65 2.83
245 246 2.859538 ACCGTACGTGTTGTACTGTTTG 59.140 45.455 15.21 0.00 45.65 2.93
246 247 3.675775 ACCGTACGTGTTGTACTGTTTGT 60.676 43.478 15.21 0.00 45.65 2.83
247 248 5.150293 ACCGTACGTGTTGTACTGTTTGTT 61.150 41.667 15.21 0.00 45.65 2.83
248 249 7.132656 ACCGTACGTGTTGTACTGTTTGTTG 62.133 44.000 15.21 0.00 45.65 3.33
251 252 5.459110 ACGTGTTGTACTGTTTGTTGTAG 57.541 39.130 0.00 0.00 0.00 2.74
252 253 4.931002 ACGTGTTGTACTGTTTGTTGTAGT 59.069 37.500 0.00 0.00 0.00 2.73
253 254 6.098679 ACGTGTTGTACTGTTTGTTGTAGTA 58.901 36.000 0.00 0.00 0.00 1.82
254 255 6.757947 ACGTGTTGTACTGTTTGTTGTAGTAT 59.242 34.615 0.00 0.00 30.47 2.12
255 256 7.920151 ACGTGTTGTACTGTTTGTTGTAGTATA 59.080 33.333 0.00 0.00 30.47 1.47
256 257 8.754096 CGTGTTGTACTGTTTGTTGTAGTATAA 58.246 33.333 0.00 0.00 30.47 0.98
257 258 9.853921 GTGTTGTACTGTTTGTTGTAGTATAAC 57.146 33.333 13.03 13.03 43.40 1.89
258 259 9.044150 TGTTGTACTGTTTGTTGTAGTATAACC 57.956 33.333 15.63 0.00 42.92 2.85
259 260 9.044150 GTTGTACTGTTTGTTGTAGTATAACCA 57.956 33.333 7.25 0.00 40.29 3.67
260 261 9.610705 TTGTACTGTTTGTTGTAGTATAACCAA 57.389 29.630 7.25 0.40 30.47 3.67
261 262 9.781633 TGTACTGTTTGTTGTAGTATAACCAAT 57.218 29.630 7.25 0.00 30.47 3.16
264 265 9.223099 ACTGTTTGTTGTAGTATAACCAATACC 57.777 33.333 7.25 0.00 41.33 2.73
265 266 9.444600 CTGTTTGTTGTAGTATAACCAATACCT 57.555 33.333 7.25 0.00 41.33 3.08
266 267 9.796180 TGTTTGTTGTAGTATAACCAATACCTT 57.204 29.630 7.25 0.00 41.33 3.50
268 269 7.852971 TGTTGTAGTATAACCAATACCTTGC 57.147 36.000 7.25 0.00 41.33 4.01
269 270 7.626390 TGTTGTAGTATAACCAATACCTTGCT 58.374 34.615 7.25 0.00 41.33 3.91
270 271 7.767198 TGTTGTAGTATAACCAATACCTTGCTC 59.233 37.037 7.25 0.00 41.33 4.26
271 272 7.426606 TGTAGTATAACCAATACCTTGCTCA 57.573 36.000 0.00 0.00 41.33 4.26
272 273 8.029782 TGTAGTATAACCAATACCTTGCTCAT 57.970 34.615 0.00 0.00 41.33 2.90
273 274 7.931407 TGTAGTATAACCAATACCTTGCTCATG 59.069 37.037 0.00 0.00 41.33 3.07
274 275 5.765182 AGTATAACCAATACCTTGCTCATGC 59.235 40.000 0.00 0.00 41.33 4.06
275 276 5.530915 GTATAACCAATACCTTGCTCATGCA 59.469 40.000 0.00 0.00 39.96 3.96
276 277 6.513393 GTATAACCAATACCTTGCTCATGCAC 60.513 42.308 0.00 0.00 40.67 4.57
277 278 9.567851 GTATAACCAATACCTTGCTCATGCACG 62.568 44.444 0.00 0.00 40.67 5.34
294 295 2.507324 GCTCCGCGTTCCTCTCAC 60.507 66.667 4.92 0.00 0.00 3.51
295 296 2.182030 CTCCGCGTTCCTCTCACC 59.818 66.667 4.92 0.00 0.00 4.02
296 297 2.282958 TCCGCGTTCCTCTCACCT 60.283 61.111 4.92 0.00 0.00 4.00
297 298 1.878656 CTCCGCGTTCCTCTCACCTT 61.879 60.000 4.92 0.00 0.00 3.50
298 299 1.446272 CCGCGTTCCTCTCACCTTC 60.446 63.158 4.92 0.00 0.00 3.46
299 300 1.446272 CGCGTTCCTCTCACCTTCC 60.446 63.158 0.00 0.00 0.00 3.46
300 301 1.671742 GCGTTCCTCTCACCTTCCA 59.328 57.895 0.00 0.00 0.00 3.53
301 302 0.670854 GCGTTCCTCTCACCTTCCAC 60.671 60.000 0.00 0.00 0.00 4.02
302 303 0.679505 CGTTCCTCTCACCTTCCACA 59.320 55.000 0.00 0.00 0.00 4.17
303 304 1.337260 CGTTCCTCTCACCTTCCACAG 60.337 57.143 0.00 0.00 0.00 3.66
304 305 1.694696 GTTCCTCTCACCTTCCACAGT 59.305 52.381 0.00 0.00 0.00 3.55
305 306 1.342074 TCCTCTCACCTTCCACAGTG 58.658 55.000 0.00 0.00 35.24 3.66
306 307 1.051812 CCTCTCACCTTCCACAGTGT 58.948 55.000 0.00 0.00 35.45 3.55
307 308 1.270518 CCTCTCACCTTCCACAGTGTG 60.271 57.143 16.70 16.70 35.45 3.82
320 321 4.214980 CACAGTGTGGATCTTGTCAAAC 57.785 45.455 15.86 0.00 0.00 2.93
321 322 3.879295 CACAGTGTGGATCTTGTCAAACT 59.121 43.478 15.86 0.00 0.00 2.66
322 323 4.024556 CACAGTGTGGATCTTGTCAAACTC 60.025 45.833 15.86 0.00 0.00 3.01
323 324 4.129380 CAGTGTGGATCTTGTCAAACTCA 58.871 43.478 0.00 0.00 0.00 3.41
324 325 4.758674 CAGTGTGGATCTTGTCAAACTCAT 59.241 41.667 0.00 0.00 0.00 2.90
325 326 4.999950 AGTGTGGATCTTGTCAAACTCATC 59.000 41.667 0.00 0.00 0.00 2.92
326 327 4.154918 GTGTGGATCTTGTCAAACTCATCC 59.845 45.833 0.00 5.91 0.00 3.51
327 328 4.042062 TGTGGATCTTGTCAAACTCATCCT 59.958 41.667 11.22 0.00 0.00 3.24
328 329 5.006386 GTGGATCTTGTCAAACTCATCCTT 58.994 41.667 11.22 0.00 0.00 3.36
329 330 6.173339 GTGGATCTTGTCAAACTCATCCTTA 58.827 40.000 11.22 0.00 0.00 2.69
330 331 6.314896 GTGGATCTTGTCAAACTCATCCTTAG 59.685 42.308 11.22 0.00 0.00 2.18
331 332 6.213397 TGGATCTTGTCAAACTCATCCTTAGA 59.787 38.462 11.22 0.00 0.00 2.10
332 333 7.092712 TGGATCTTGTCAAACTCATCCTTAGAT 60.093 37.037 11.22 0.00 0.00 1.98
333 334 8.424918 GGATCTTGTCAAACTCATCCTTAGATA 58.575 37.037 0.00 0.00 0.00 1.98
334 335 9.255304 GATCTTGTCAAACTCATCCTTAGATAC 57.745 37.037 0.00 0.00 0.00 2.24
335 336 7.556844 TCTTGTCAAACTCATCCTTAGATACC 58.443 38.462 0.00 0.00 0.00 2.73
336 337 7.400339 TCTTGTCAAACTCATCCTTAGATACCT 59.600 37.037 0.00 0.00 0.00 3.08
337 338 7.496346 TGTCAAACTCATCCTTAGATACCTT 57.504 36.000 0.00 0.00 0.00 3.50
338 339 8.603898 TGTCAAACTCATCCTTAGATACCTTA 57.396 34.615 0.00 0.00 0.00 2.69
339 340 9.042450 TGTCAAACTCATCCTTAGATACCTTAA 57.958 33.333 0.00 0.00 0.00 1.85
340 341 9.535878 GTCAAACTCATCCTTAGATACCTTAAG 57.464 37.037 0.00 0.00 0.00 1.85
341 342 8.705594 TCAAACTCATCCTTAGATACCTTAAGG 58.294 37.037 20.42 20.42 41.18 2.69
342 343 7.619512 AACTCATCCTTAGATACCTTAAGGG 57.380 40.000 25.31 7.85 40.44 3.95
343 344 5.544562 ACTCATCCTTAGATACCTTAAGGGC 59.455 44.000 25.31 13.82 40.44 5.19
344 345 5.473273 TCATCCTTAGATACCTTAAGGGCA 58.527 41.667 25.31 13.06 40.44 5.36
345 346 5.307196 TCATCCTTAGATACCTTAAGGGCAC 59.693 44.000 25.31 14.68 40.44 5.01
346 347 4.892198 TCCTTAGATACCTTAAGGGCACT 58.108 43.478 25.31 20.15 40.44 4.40
347 348 4.654262 TCCTTAGATACCTTAAGGGCACTG 59.346 45.833 25.31 8.89 40.44 3.66
348 349 4.409247 CCTTAGATACCTTAAGGGCACTGT 59.591 45.833 25.31 5.89 40.27 3.55
349 350 3.914426 AGATACCTTAAGGGCACTGTG 57.086 47.619 25.31 2.76 40.27 3.66
350 351 2.505819 AGATACCTTAAGGGCACTGTGG 59.494 50.000 25.31 0.00 40.27 4.17
351 352 2.032965 TACCTTAAGGGCACTGTGGA 57.967 50.000 25.31 0.00 40.27 4.02
352 353 1.372501 ACCTTAAGGGCACTGTGGAT 58.627 50.000 25.31 0.00 40.27 3.41
353 354 1.282157 ACCTTAAGGGCACTGTGGATC 59.718 52.381 25.31 0.00 40.27 3.36
354 355 1.561542 CCTTAAGGGCACTGTGGATCT 59.438 52.381 14.25 0.00 0.00 2.75
355 356 2.025887 CCTTAAGGGCACTGTGGATCTT 60.026 50.000 14.25 1.70 0.00 2.40
356 357 2.787473 TAAGGGCACTGTGGATCTTG 57.213 50.000 10.21 0.00 0.00 3.02
357 358 0.038744 AAGGGCACTGTGGATCTTGG 59.961 55.000 10.21 0.00 0.00 3.61
358 359 1.379044 GGGCACTGTGGATCTTGGG 60.379 63.158 10.21 0.00 0.00 4.12
359 360 2.048603 GGCACTGTGGATCTTGGGC 61.049 63.158 10.21 0.00 0.00 5.36
360 361 1.001641 GCACTGTGGATCTTGGGCT 60.002 57.895 10.21 0.00 0.00 5.19
361 362 0.253044 GCACTGTGGATCTTGGGCTA 59.747 55.000 10.21 0.00 0.00 3.93
362 363 2.014068 GCACTGTGGATCTTGGGCTAC 61.014 57.143 10.21 0.00 0.00 3.58
363 364 1.278985 CACTGTGGATCTTGGGCTACA 59.721 52.381 0.00 0.00 0.00 2.74
364 365 1.279271 ACTGTGGATCTTGGGCTACAC 59.721 52.381 0.00 0.00 0.00 2.90
365 366 1.278985 CTGTGGATCTTGGGCTACACA 59.721 52.381 0.00 0.00 37.31 3.72
366 367 1.915489 TGTGGATCTTGGGCTACACAT 59.085 47.619 0.00 0.00 34.31 3.21
367 368 2.308570 TGTGGATCTTGGGCTACACATT 59.691 45.455 0.00 0.00 34.31 2.71
368 369 2.684881 GTGGATCTTGGGCTACACATTG 59.315 50.000 0.00 0.00 0.00 2.82
369 370 2.575735 TGGATCTTGGGCTACACATTGA 59.424 45.455 0.00 0.00 0.00 2.57
370 371 2.945668 GGATCTTGGGCTACACATTGAC 59.054 50.000 0.00 0.00 0.00 3.18
371 372 2.093306 TCTTGGGCTACACATTGACG 57.907 50.000 0.00 0.00 0.00 4.35
372 373 1.086696 CTTGGGCTACACATTGACGG 58.913 55.000 0.00 0.00 0.00 4.79
373 374 0.687920 TTGGGCTACACATTGACGGA 59.312 50.000 0.00 0.00 0.00 4.69
374 375 0.036765 TGGGCTACACATTGACGGAC 60.037 55.000 0.00 0.00 0.00 4.79
375 376 1.082117 GGGCTACACATTGACGGACG 61.082 60.000 0.00 0.00 0.00 4.79
376 377 1.082117 GGCTACACATTGACGGACGG 61.082 60.000 0.00 0.00 0.00 4.79
377 378 1.693083 GCTACACATTGACGGACGGC 61.693 60.000 0.00 0.00 0.00 5.68
378 379 1.079681 TACACATTGACGGACGGCC 60.080 57.895 0.00 0.00 0.00 6.13
407 408 2.026014 CGGCAGCACGCAAAGTTT 59.974 55.556 0.00 0.00 45.17 2.66
408 409 2.295052 CGGCAGCACGCAAAGTTTG 61.295 57.895 11.41 11.41 45.17 2.93
420 421 1.535462 CAAAGTTTGCTCCAGGGTACG 59.465 52.381 1.96 0.00 0.00 3.67
421 422 0.763035 AAGTTTGCTCCAGGGTACGT 59.237 50.000 0.00 0.00 0.00 3.57
422 423 1.636148 AGTTTGCTCCAGGGTACGTA 58.364 50.000 0.00 0.00 0.00 3.57
423 424 1.274447 AGTTTGCTCCAGGGTACGTAC 59.726 52.381 17.56 17.56 0.00 3.67
424 425 0.244450 TTTGCTCCAGGGTACGTACG 59.756 55.000 18.98 15.01 0.00 3.67
425 426 0.895100 TTGCTCCAGGGTACGTACGT 60.895 55.000 25.98 25.98 0.00 3.57
426 427 1.138247 GCTCCAGGGTACGTACGTG 59.862 63.158 30.25 17.37 0.00 4.49
427 428 1.805254 CTCCAGGGTACGTACGTGG 59.195 63.158 30.25 27.95 34.17 4.94
428 429 0.962356 CTCCAGGGTACGTACGTGGT 60.962 60.000 30.29 9.32 34.39 4.16
429 430 0.960364 TCCAGGGTACGTACGTGGTC 60.960 60.000 30.29 18.80 34.39 4.02
430 431 1.135315 CAGGGTACGTACGTGGTCG 59.865 63.158 30.25 11.21 43.34 4.79
431 432 2.040544 AGGGTACGTACGTGGTCGG 61.041 63.158 30.25 0.00 41.85 4.79
432 433 2.485122 GGTACGTACGTGGTCGGG 59.515 66.667 30.25 0.00 41.85 5.14
433 434 2.202479 GTACGTACGTGGTCGGGC 60.202 66.667 30.25 8.02 41.85 6.13
434 435 3.439540 TACGTACGTGGTCGGGCC 61.440 66.667 30.25 0.00 41.85 5.80
435 436 3.918253 TACGTACGTGGTCGGGCCT 62.918 63.158 30.25 1.85 41.85 5.19
436 437 2.529454 TACGTACGTGGTCGGGCCTA 62.529 60.000 30.25 3.44 41.85 3.93
437 438 2.699768 CGTACGTGGTCGGGCCTAA 61.700 63.158 7.22 0.00 41.85 2.69
438 439 1.153765 GTACGTGGTCGGGCCTAAC 60.154 63.158 0.84 0.30 41.85 2.34
439 440 2.699768 TACGTGGTCGGGCCTAACG 61.700 63.158 9.63 9.63 40.98 3.18
441 442 4.382320 GTGGTCGGGCCTAACGCA 62.382 66.667 0.84 0.00 40.31 5.24
442 443 4.382320 TGGTCGGGCCTAACGCAC 62.382 66.667 0.84 0.00 40.31 5.34
447 448 2.882301 GGGCCTAACGCACGTACG 60.882 66.667 15.01 15.01 40.31 3.67
448 449 3.548231 GGCCTAACGCACGTACGC 61.548 66.667 16.72 0.00 40.31 4.42
471 472 2.667348 GGGACGGTCAAAGGAGAGA 58.333 57.895 10.76 0.00 0.00 3.10
472 473 0.533032 GGGACGGTCAAAGGAGAGAG 59.467 60.000 10.76 0.00 0.00 3.20
473 474 1.258676 GGACGGTCAAAGGAGAGAGT 58.741 55.000 10.76 0.00 0.00 3.24
474 475 2.444421 GGACGGTCAAAGGAGAGAGTA 58.556 52.381 10.76 0.00 0.00 2.59
475 476 2.164017 GGACGGTCAAAGGAGAGAGTAC 59.836 54.545 10.76 0.00 0.00 2.73
476 477 1.811359 ACGGTCAAAGGAGAGAGTACG 59.189 52.381 0.00 0.00 0.00 3.67
477 478 1.811359 CGGTCAAAGGAGAGAGTACGT 59.189 52.381 0.00 0.00 0.00 3.57
478 479 2.414293 CGGTCAAAGGAGAGAGTACGTG 60.414 54.545 0.00 0.00 0.00 4.49
479 480 2.094649 GGTCAAAGGAGAGAGTACGTGG 60.095 54.545 0.00 0.00 0.00 4.94
480 481 2.557490 GTCAAAGGAGAGAGTACGTGGT 59.443 50.000 0.00 0.00 0.00 4.16
481 482 3.005578 GTCAAAGGAGAGAGTACGTGGTT 59.994 47.826 0.00 0.00 0.00 3.67
482 483 3.640029 TCAAAGGAGAGAGTACGTGGTTT 59.360 43.478 0.00 0.00 0.00 3.27
483 484 3.662247 AAGGAGAGAGTACGTGGTTTG 57.338 47.619 0.00 0.00 0.00 2.93
484 485 1.272769 AGGAGAGAGTACGTGGTTTGC 59.727 52.381 0.00 0.00 0.00 3.68
551 996 1.304134 GGGCCCAACACGAGGAAAT 60.304 57.895 19.95 0.00 0.00 2.17
627 1072 1.338864 GGACGGTCCTTTCTTCCTTCC 60.339 57.143 19.92 0.00 33.68 3.46
663 1129 6.091034 CAGCATCTTCTCATAATCTCATTCCG 59.909 42.308 0.00 0.00 0.00 4.30
670 1136 9.922305 CTTCTCATAATCTCATTCCGTTTTTAC 57.078 33.333 0.00 0.00 0.00 2.01
672 1138 9.098355 TCTCATAATCTCATTCCGTTTTTACTG 57.902 33.333 0.00 0.00 0.00 2.74
673 1139 8.786826 TCATAATCTCATTCCGTTTTTACTGT 57.213 30.769 0.00 0.00 0.00 3.55
674 1140 9.878667 TCATAATCTCATTCCGTTTTTACTGTA 57.121 29.630 0.00 0.00 0.00 2.74
724 1191 8.917088 ACTAATAGCTTTCACCATGCAATTTAT 58.083 29.630 0.00 0.00 0.00 1.40
727 1194 9.452287 AATAGCTTTCACCATGCAATTTATTTT 57.548 25.926 0.00 0.00 0.00 1.82
729 1196 8.255394 AGCTTTCACCATGCAATTTATTTTAC 57.745 30.769 0.00 0.00 0.00 2.01
730 1197 8.096414 AGCTTTCACCATGCAATTTATTTTACT 58.904 29.630 0.00 0.00 0.00 2.24
731 1198 8.170553 GCTTTCACCATGCAATTTATTTTACTG 58.829 33.333 0.00 0.00 0.00 2.74
732 1199 7.593875 TTCACCATGCAATTTATTTTACTGC 57.406 32.000 0.00 0.00 0.00 4.40
733 1200 6.934056 TCACCATGCAATTTATTTTACTGCT 58.066 32.000 0.00 0.00 34.10 4.24
734 1201 8.060931 TCACCATGCAATTTATTTTACTGCTA 57.939 30.769 0.00 0.00 34.10 3.49
736 1203 9.964303 CACCATGCAATTTATTTTACTGCTATA 57.036 29.630 0.00 0.00 34.10 1.31
750 1221 4.849883 ACTGCTATATCTCGTGTTTCTCG 58.150 43.478 0.00 0.00 0.00 4.04
753 1224 4.575236 TGCTATATCTCGTGTTTCTCGTCT 59.425 41.667 0.00 0.00 0.00 4.18
755 1226 6.427242 TGCTATATCTCGTGTTTCTCGTCTAT 59.573 38.462 0.00 0.00 0.00 1.98
757 1228 8.111836 GCTATATCTCGTGTTTCTCGTCTATAG 58.888 40.741 0.00 0.00 0.00 1.31
761 1234 4.763073 TCGTGTTTCTCGTCTATAGAGGA 58.237 43.478 20.83 20.83 37.39 3.71
841 1314 1.146263 GCCGTGTATGGAAGGGAGG 59.854 63.158 0.00 0.00 0.00 4.30
842 1315 1.335132 GCCGTGTATGGAAGGGAGGA 61.335 60.000 0.00 0.00 0.00 3.71
859 1332 3.058224 GGAGGAAAAACCACATTGACTCG 60.058 47.826 0.00 0.00 42.04 4.18
900 1373 2.524440 TCTGTCCTCCCTTCCTATCCAT 59.476 50.000 0.00 0.00 0.00 3.41
901 1374 2.903135 CTGTCCTCCCTTCCTATCCATC 59.097 54.545 0.00 0.00 0.00 3.51
904 1377 2.112691 TCCTCCCTTCCTATCCATCTCC 59.887 54.545 0.00 0.00 0.00 3.71
905 1378 2.175202 CTCCCTTCCTATCCATCTCCG 58.825 57.143 0.00 0.00 0.00 4.63
927 1420 6.839820 CGTCTACGGCTTCCTTTTTATTAT 57.160 37.500 0.00 0.00 35.37 1.28
928 1421 7.242914 CGTCTACGGCTTCCTTTTTATTATT 57.757 36.000 0.00 0.00 35.37 1.40
929 1422 8.356533 CGTCTACGGCTTCCTTTTTATTATTA 57.643 34.615 0.00 0.00 35.37 0.98
930 1423 8.985805 CGTCTACGGCTTCCTTTTTATTATTAT 58.014 33.333 0.00 0.00 35.37 1.28
936 1429 8.410141 CGGCTTCCTTTTTATTATTATTCACCA 58.590 33.333 0.00 0.00 0.00 4.17
949 1442 8.593945 TTATTATTCACCATGCCTTCTTCTTT 57.406 30.769 0.00 0.00 0.00 2.52
951 1444 4.589216 TTCACCATGCCTTCTTCTTTTG 57.411 40.909 0.00 0.00 0.00 2.44
952 1445 2.297033 TCACCATGCCTTCTTCTTTTGC 59.703 45.455 0.00 0.00 0.00 3.68
953 1446 1.620323 ACCATGCCTTCTTCTTTTGCC 59.380 47.619 0.00 0.00 0.00 4.52
954 1447 1.619827 CCATGCCTTCTTCTTTTGCCA 59.380 47.619 0.00 0.00 0.00 4.92
956 1449 1.774110 TGCCTTCTTCTTTTGCCACA 58.226 45.000 0.00 0.00 0.00 4.17
957 1450 2.106566 TGCCTTCTTCTTTTGCCACAA 58.893 42.857 0.00 0.00 0.00 3.33
958 1451 2.101249 TGCCTTCTTCTTTTGCCACAAG 59.899 45.455 0.00 0.00 0.00 3.16
959 1452 2.546584 GCCTTCTTCTTTTGCCACAAGG 60.547 50.000 0.00 0.00 38.23 3.61
969 1462 2.357836 CCACAAGGCAGGCATCCT 59.642 61.111 0.00 0.00 34.90 3.24
980 1473 1.959282 CAGGCATCCTAATCCCAAAGC 59.041 52.381 0.00 0.00 29.64 3.51
1039 1570 4.516195 GGCTCGGCGACTTCTCCC 62.516 72.222 4.99 0.00 0.00 4.30
1046 1577 2.802106 CGACTTCTCCCTCGCCTC 59.198 66.667 0.00 0.00 0.00 4.70
1047 1578 2.776913 CGACTTCTCCCTCGCCTCC 61.777 68.421 0.00 0.00 0.00 4.30
1048 1579 2.364448 ACTTCTCCCTCGCCTCCC 60.364 66.667 0.00 0.00 0.00 4.30
1049 1580 2.042435 CTTCTCCCTCGCCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
1051 1582 2.581726 CTTCTCCCTCGCCTCCCTCT 62.582 65.000 0.00 0.00 0.00 3.69
1052 1583 2.837291 CTCCCTCGCCTCCCTCTG 60.837 72.222 0.00 0.00 0.00 3.35
1082 1643 0.038159 CCGCCGGATCTCCAATCTAC 60.038 60.000 5.05 0.00 35.14 2.59
1083 1644 0.962489 CGCCGGATCTCCAATCTACT 59.038 55.000 5.05 0.00 35.14 2.57
1084 1645 1.341531 CGCCGGATCTCCAATCTACTT 59.658 52.381 5.05 0.00 35.14 2.24
1120 1681 0.818040 GGTTCGCCGGCCATCTTAAT 60.818 55.000 23.46 0.00 0.00 1.40
1142 1703 2.099405 CTTCTCTCCGCCTTCTTCTCT 58.901 52.381 0.00 0.00 0.00 3.10
1143 1704 3.054287 TCTTCTCTCCGCCTTCTTCTCTA 60.054 47.826 0.00 0.00 0.00 2.43
1144 1705 3.367646 TCTCTCCGCCTTCTTCTCTAA 57.632 47.619 0.00 0.00 0.00 2.10
1145 1706 3.904717 TCTCTCCGCCTTCTTCTCTAAT 58.095 45.455 0.00 0.00 0.00 1.73
1163 1822 6.650807 TCTCTAATGGTTGTTGATTGACACTC 59.349 38.462 0.00 0.00 0.00 3.51
1208 1867 0.040067 GCAGACGTTGAAGCCCTTTG 60.040 55.000 0.00 0.00 0.00 2.77
1209 1868 0.593128 CAGACGTTGAAGCCCTTTGG 59.407 55.000 0.00 0.00 0.00 3.28
1246 1956 5.064834 GGGTGAGATCGTTTAATCTTTGTCC 59.935 44.000 0.00 0.00 36.13 4.02
1466 2194 2.598632 GCGACAACGTCAAGCAGCT 61.599 57.895 0.00 0.00 41.98 4.24
1496 2272 2.742372 CCAGCGTCCCAACCTTCG 60.742 66.667 0.00 0.00 0.00 3.79
1527 2303 3.716006 CAGCACCGCCGTTGACAG 61.716 66.667 0.00 0.00 0.00 3.51
1528 2304 4.988598 AGCACCGCCGTTGACAGG 62.989 66.667 0.00 0.00 0.00 4.00
1529 2305 4.980805 GCACCGCCGTTGACAGGA 62.981 66.667 0.00 0.00 0.00 3.86
1530 2306 2.738521 CACCGCCGTTGACAGGAG 60.739 66.667 0.00 0.00 0.00 3.69
1531 2307 4.681978 ACCGCCGTTGACAGGAGC 62.682 66.667 0.00 0.00 0.00 4.70
1532 2308 4.680237 CCGCCGTTGACAGGAGCA 62.680 66.667 0.00 0.00 0.00 4.26
1533 2309 3.414700 CGCCGTTGACAGGAGCAC 61.415 66.667 0.00 0.00 0.00 4.40
1534 2310 2.280797 GCCGTTGACAGGAGCACA 60.281 61.111 0.00 0.00 0.00 4.57
1535 2311 2.320587 GCCGTTGACAGGAGCACAG 61.321 63.158 0.00 0.00 0.00 3.66
1536 2312 2.320587 CCGTTGACAGGAGCACAGC 61.321 63.158 0.00 0.00 0.00 4.40
1537 2313 2.320587 CGTTGACAGGAGCACAGCC 61.321 63.158 0.00 0.00 0.00 4.85
1538 2314 1.227943 GTTGACAGGAGCACAGCCA 60.228 57.895 0.00 0.00 0.00 4.75
1539 2315 0.607489 GTTGACAGGAGCACAGCCAT 60.607 55.000 0.00 0.00 0.00 4.40
1540 2316 0.321919 TTGACAGGAGCACAGCCATC 60.322 55.000 0.00 0.00 0.00 3.51
1541 2317 1.812922 GACAGGAGCACAGCCATCG 60.813 63.158 0.00 0.00 0.00 3.84
1542 2318 3.200593 CAGGAGCACAGCCATCGC 61.201 66.667 0.00 0.00 0.00 4.58
1543 2319 4.479993 AGGAGCACAGCCATCGCC 62.480 66.667 0.00 0.00 34.57 5.54
1544 2320 4.783621 GGAGCACAGCCATCGCCA 62.784 66.667 0.00 0.00 34.57 5.69
1545 2321 2.515523 GAGCACAGCCATCGCCAT 60.516 61.111 0.00 0.00 34.57 4.40
1546 2322 1.227645 GAGCACAGCCATCGCCATA 60.228 57.895 0.00 0.00 34.57 2.74
1547 2323 1.226686 GAGCACAGCCATCGCCATAG 61.227 60.000 0.00 0.00 34.57 2.23
1548 2324 1.227645 GCACAGCCATCGCCATAGA 60.228 57.895 0.00 0.00 34.57 1.98
1549 2325 0.604780 GCACAGCCATCGCCATAGAT 60.605 55.000 0.00 0.00 34.57 1.98
1550 2326 1.338105 GCACAGCCATCGCCATAGATA 60.338 52.381 0.00 0.00 34.57 1.98
1551 2327 2.679059 GCACAGCCATCGCCATAGATAT 60.679 50.000 0.00 0.00 34.57 1.63
1552 2328 3.193263 CACAGCCATCGCCATAGATATC 58.807 50.000 0.00 0.00 34.57 1.63
1553 2329 2.833943 ACAGCCATCGCCATAGATATCA 59.166 45.455 5.32 0.00 34.57 2.15
1554 2330 3.118847 ACAGCCATCGCCATAGATATCAG 60.119 47.826 5.32 0.00 34.57 2.90
1555 2331 2.433604 AGCCATCGCCATAGATATCAGG 59.566 50.000 5.32 5.08 34.57 3.86
1556 2332 2.432146 GCCATCGCCATAGATATCAGGA 59.568 50.000 5.32 0.00 0.00 3.86
1557 2333 3.492309 GCCATCGCCATAGATATCAGGAG 60.492 52.174 5.32 5.95 0.00 3.69
1558 2334 3.492309 CCATCGCCATAGATATCAGGAGC 60.492 52.174 5.32 1.86 0.00 4.70
1559 2335 1.745653 TCGCCATAGATATCAGGAGCG 59.254 52.381 18.42 18.42 43.42 5.03
1560 2336 1.800655 CGCCATAGATATCAGGAGCGC 60.801 57.143 14.40 0.00 35.58 5.92
1561 2337 1.800655 GCCATAGATATCAGGAGCGCG 60.801 57.143 0.00 0.00 0.00 6.86
1562 2338 1.554392 CATAGATATCAGGAGCGCGC 58.446 55.000 26.66 26.66 0.00 6.86
1563 2339 0.457851 ATAGATATCAGGAGCGCGCC 59.542 55.000 30.33 23.92 0.00 6.53
1564 2340 1.923227 TAGATATCAGGAGCGCGCCG 61.923 60.000 30.33 18.73 0.00 6.46
1565 2341 3.559657 GATATCAGGAGCGCGCCGT 62.560 63.158 30.33 17.92 0.00 5.68
1566 2342 3.151958 ATATCAGGAGCGCGCCGTT 62.152 57.895 30.33 9.92 0.00 4.44
1595 2371 2.679059 GCACAGCCATCGCCATAGATAT 60.679 50.000 0.00 0.00 34.57 1.63
1624 2400 1.374125 CCAGTTGCCATCGACGACA 60.374 57.895 0.00 0.00 0.00 4.35
1850 2626 4.122149 TTGGGGGCCATGGTAGCG 62.122 66.667 14.67 0.00 31.53 4.26
1922 2702 3.706594 TCAGACTTATCTCAGGCGGAAAT 59.293 43.478 0.00 0.00 30.42 2.17
1930 2710 0.690192 TCAGGCGGAAATCAAGGTGA 59.310 50.000 0.00 0.00 0.00 4.02
1938 2718 3.010420 GGAAATCAAGGTGACAGCTACC 58.990 50.000 7.75 0.00 38.52 3.18
2034 2837 8.965986 GAAACAGTTTCTTCAAACCCATATAC 57.034 34.615 17.48 0.00 42.72 1.47
2042 2848 9.913310 TTTCTTCAAACCCATATACATGATGTA 57.087 29.630 7.86 7.86 37.24 2.29
2106 2920 0.107214 TGAGAAATGGCACCCGATCC 60.107 55.000 0.00 0.00 0.00 3.36
2126 2940 3.881953 ATCGACGAGATGCAGATGG 57.118 52.632 3.01 0.00 38.36 3.51
2488 3346 9.100554 CAACAGGTTATTACACGGTGATAAATA 57.899 33.333 16.29 11.98 28.53 1.40
2490 3348 9.101655 ACAGGTTATTACACGGTGATAAATAAC 57.898 33.333 27.18 27.18 40.11 1.89
2547 3411 3.491598 AACCTTGTCGGCCAGTGGG 62.492 63.158 12.15 0.00 35.61 4.61
2604 3468 2.413239 CCAGCTCAACATAACTGCAACG 60.413 50.000 0.00 0.00 0.00 4.10
2692 3560 8.496751 ACTTGAGCTAGTAAAATTCGAGAAAAC 58.503 33.333 0.00 0.00 0.00 2.43
2693 3561 7.360575 TGAGCTAGTAAAATTCGAGAAAACC 57.639 36.000 0.00 0.00 0.00 3.27
2721 3604 2.807967 ACATCAATGACACAGAACCACG 59.192 45.455 0.00 0.00 0.00 4.94
2735 3618 0.319900 ACCACGACTGCAGCAAGTAG 60.320 55.000 15.27 7.14 35.87 2.57
2800 3684 3.038280 TGGGAGTATGGGTATGTGTCTG 58.962 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.707298 CACTTGAGATTTAGAGGCCTTTTGA 59.293 40.000 6.77 0.00 0.00 2.69
1 2 5.105997 CCACTTGAGATTTAGAGGCCTTTTG 60.106 44.000 6.77 0.00 0.00 2.44
2 3 5.012893 CCACTTGAGATTTAGAGGCCTTTT 58.987 41.667 6.77 0.31 0.00 2.27
3 4 4.043435 ACCACTTGAGATTTAGAGGCCTTT 59.957 41.667 6.77 2.86 0.00 3.11
4 5 3.589288 ACCACTTGAGATTTAGAGGCCTT 59.411 43.478 6.77 0.00 0.00 4.35
5 6 3.054802 CACCACTTGAGATTTAGAGGCCT 60.055 47.826 3.86 3.86 0.00 5.19
6 7 3.274288 CACCACTTGAGATTTAGAGGCC 58.726 50.000 0.00 0.00 0.00 5.19
7 8 3.944087 ACACCACTTGAGATTTAGAGGC 58.056 45.455 0.00 0.00 0.00 4.70
8 9 6.884280 AAAACACCACTTGAGATTTAGAGG 57.116 37.500 0.00 0.00 0.00 3.69
9 10 8.378172 TGTAAAACACCACTTGAGATTTAGAG 57.622 34.615 0.00 0.00 0.00 2.43
10 11 8.740123 TTGTAAAACACCACTTGAGATTTAGA 57.260 30.769 0.00 0.00 0.00 2.10
11 12 9.796120 TTTTGTAAAACACCACTTGAGATTTAG 57.204 29.630 0.00 0.00 0.00 1.85
12 13 9.575783 GTTTTGTAAAACACCACTTGAGATTTA 57.424 29.630 13.69 0.00 45.72 1.40
13 14 7.274686 CGTTTTGTAAAACACCACTTGAGATTT 59.725 33.333 17.41 0.00 46.52 2.17
14 15 6.750039 CGTTTTGTAAAACACCACTTGAGATT 59.250 34.615 17.41 0.00 46.52 2.40
15 16 6.262601 CGTTTTGTAAAACACCACTTGAGAT 58.737 36.000 17.41 0.00 46.52 2.75
16 17 5.632959 CGTTTTGTAAAACACCACTTGAGA 58.367 37.500 17.41 0.00 46.52 3.27
17 18 4.264380 GCGTTTTGTAAAACACCACTTGAG 59.736 41.667 17.41 2.64 46.52 3.02
18 19 4.167268 GCGTTTTGTAAAACACCACTTGA 58.833 39.130 17.41 0.00 46.52 3.02
19 20 3.304826 GGCGTTTTGTAAAACACCACTTG 59.695 43.478 17.77 4.36 45.70 3.16
20 21 3.513662 GGCGTTTTGTAAAACACCACTT 58.486 40.909 17.77 0.00 45.70 3.16
21 22 3.153676 GGCGTTTTGTAAAACACCACT 57.846 42.857 17.77 0.00 45.70 4.00
24 25 1.855513 GGGGCGTTTTGTAAAACACC 58.144 50.000 15.47 15.47 46.52 4.16
25 26 1.202279 ACGGGGCGTTTTGTAAAACAC 60.202 47.619 17.41 9.58 46.52 3.32
26 27 1.101331 ACGGGGCGTTTTGTAAAACA 58.899 45.000 17.41 0.00 46.52 2.83
27 28 3.299162 CTTACGGGGCGTTTTGTAAAAC 58.701 45.455 9.58 9.58 43.61 2.43
28 29 2.287487 GCTTACGGGGCGTTTTGTAAAA 60.287 45.455 0.00 0.00 41.54 1.52
29 30 1.266446 GCTTACGGGGCGTTTTGTAAA 59.734 47.619 0.00 0.00 41.54 2.01
30 31 0.873721 GCTTACGGGGCGTTTTGTAA 59.126 50.000 0.00 0.00 41.54 2.41
31 32 0.035176 AGCTTACGGGGCGTTTTGTA 59.965 50.000 0.00 0.00 41.54 2.41
32 33 0.035176 TAGCTTACGGGGCGTTTTGT 59.965 50.000 0.00 0.00 41.54 2.83
33 34 1.375551 ATAGCTTACGGGGCGTTTTG 58.624 50.000 0.00 0.00 41.54 2.44
34 35 2.118313 AATAGCTTACGGGGCGTTTT 57.882 45.000 0.00 0.00 41.54 2.43
35 36 2.093553 TGTAATAGCTTACGGGGCGTTT 60.094 45.455 0.00 0.00 41.54 3.60
36 37 1.481772 TGTAATAGCTTACGGGGCGTT 59.518 47.619 0.00 0.00 41.54 4.84
37 38 1.113788 TGTAATAGCTTACGGGGCGT 58.886 50.000 0.00 0.00 44.35 5.68
38 39 2.450609 ATGTAATAGCTTACGGGGCG 57.549 50.000 0.00 0.00 40.15 6.13
39 40 4.094442 GCAATATGTAATAGCTTACGGGGC 59.906 45.833 0.00 0.00 40.15 5.80
40 41 5.351465 CAGCAATATGTAATAGCTTACGGGG 59.649 44.000 0.00 0.00 40.15 5.73
41 42 5.163854 GCAGCAATATGTAATAGCTTACGGG 60.164 44.000 0.00 0.00 40.15 5.28
42 43 5.408299 TGCAGCAATATGTAATAGCTTACGG 59.592 40.000 0.00 0.00 40.15 4.02
43 44 6.146184 AGTGCAGCAATATGTAATAGCTTACG 59.854 38.462 0.00 0.00 40.15 3.18
44 45 7.426929 AGTGCAGCAATATGTAATAGCTTAC 57.573 36.000 0.00 0.00 38.17 2.34
45 46 8.450578 AAAGTGCAGCAATATGTAATAGCTTA 57.549 30.769 0.00 0.00 28.95 3.09
46 47 6.949352 AAGTGCAGCAATATGTAATAGCTT 57.051 33.333 0.00 0.00 28.95 3.74
47 48 6.769822 AGAAAGTGCAGCAATATGTAATAGCT 59.230 34.615 0.00 0.00 31.27 3.32
48 49 6.963796 AGAAAGTGCAGCAATATGTAATAGC 58.036 36.000 0.00 0.00 28.50 2.97
49 50 8.146479 TGAGAAAGTGCAGCAATATGTAATAG 57.854 34.615 0.00 0.00 28.50 1.73
50 51 7.986889 TCTGAGAAAGTGCAGCAATATGTAATA 59.013 33.333 0.00 0.00 32.27 0.98
51 52 6.825213 TCTGAGAAAGTGCAGCAATATGTAAT 59.175 34.615 0.00 0.00 32.27 1.89
52 53 6.172630 TCTGAGAAAGTGCAGCAATATGTAA 58.827 36.000 0.00 0.00 32.27 2.41
53 54 5.733676 TCTGAGAAAGTGCAGCAATATGTA 58.266 37.500 0.00 0.00 32.27 2.29
54 55 4.582869 TCTGAGAAAGTGCAGCAATATGT 58.417 39.130 0.00 0.00 32.27 2.29
55 56 5.556355 TTCTGAGAAAGTGCAGCAATATG 57.444 39.130 0.00 0.00 32.27 1.78
56 57 5.450137 GCATTCTGAGAAAGTGCAGCAATAT 60.450 40.000 14.11 0.00 35.93 1.28
57 58 4.142534 GCATTCTGAGAAAGTGCAGCAATA 60.143 41.667 14.11 0.00 35.93 1.90
58 59 3.367087 GCATTCTGAGAAAGTGCAGCAAT 60.367 43.478 14.11 0.00 35.93 3.56
59 60 2.030540 GCATTCTGAGAAAGTGCAGCAA 60.031 45.455 14.11 0.00 35.93 3.91
60 61 1.538512 GCATTCTGAGAAAGTGCAGCA 59.461 47.619 14.11 0.00 35.93 4.41
61 62 1.135460 GGCATTCTGAGAAAGTGCAGC 60.135 52.381 19.01 8.27 37.53 5.25
62 63 2.156917 TGGCATTCTGAGAAAGTGCAG 58.843 47.619 19.01 0.00 37.53 4.41
63 64 2.156917 CTGGCATTCTGAGAAAGTGCA 58.843 47.619 19.01 7.55 37.53 4.57
64 65 1.135460 GCTGGCATTCTGAGAAAGTGC 60.135 52.381 11.33 11.33 35.17 4.40
65 66 2.156917 TGCTGGCATTCTGAGAAAGTG 58.843 47.619 0.00 0.00 0.00 3.16
66 67 2.574006 TGCTGGCATTCTGAGAAAGT 57.426 45.000 0.00 0.00 0.00 2.66
67 68 4.451629 AATTGCTGGCATTCTGAGAAAG 57.548 40.909 0.00 0.00 0.00 2.62
68 69 5.622914 GCTTAATTGCTGGCATTCTGAGAAA 60.623 40.000 0.00 0.00 0.00 2.52
69 70 4.142315 GCTTAATTGCTGGCATTCTGAGAA 60.142 41.667 0.00 0.00 0.00 2.87
70 71 3.379372 GCTTAATTGCTGGCATTCTGAGA 59.621 43.478 0.00 0.00 0.00 3.27
71 72 3.129813 TGCTTAATTGCTGGCATTCTGAG 59.870 43.478 0.00 0.00 0.00 3.35
72 73 3.090790 TGCTTAATTGCTGGCATTCTGA 58.909 40.909 0.00 0.00 0.00 3.27
73 74 3.513680 TGCTTAATTGCTGGCATTCTG 57.486 42.857 0.00 0.00 0.00 3.02
74 75 6.415206 AATATGCTTAATTGCTGGCATTCT 57.585 33.333 12.06 2.39 41.80 2.40
75 76 7.349711 CAAAATATGCTTAATTGCTGGCATTC 58.650 34.615 12.06 0.00 41.80 2.67
76 77 6.261381 CCAAAATATGCTTAATTGCTGGCATT 59.739 34.615 12.06 0.00 41.80 3.56
77 78 5.761234 CCAAAATATGCTTAATTGCTGGCAT 59.239 36.000 0.00 0.00 45.57 4.40
78 79 5.105023 TCCAAAATATGCTTAATTGCTGGCA 60.105 36.000 0.00 0.00 39.06 4.92
79 80 5.358922 TCCAAAATATGCTTAATTGCTGGC 58.641 37.500 0.00 0.00 0.00 4.85
80 81 5.987347 CCTCCAAAATATGCTTAATTGCTGG 59.013 40.000 0.00 0.00 0.00 4.85
81 82 5.464389 GCCTCCAAAATATGCTTAATTGCTG 59.536 40.000 0.00 0.00 0.00 4.41
82 83 5.604565 GCCTCCAAAATATGCTTAATTGCT 58.395 37.500 0.00 0.00 0.00 3.91
83 84 4.445385 CGCCTCCAAAATATGCTTAATTGC 59.555 41.667 0.00 0.00 0.00 3.56
84 85 5.591099 ACGCCTCCAAAATATGCTTAATTG 58.409 37.500 0.00 0.00 0.00 2.32
85 86 5.852282 ACGCCTCCAAAATATGCTTAATT 57.148 34.783 0.00 0.00 0.00 1.40
86 87 5.221244 GGAACGCCTCCAAAATATGCTTAAT 60.221 40.000 0.00 0.00 44.67 1.40
87 88 4.097286 GGAACGCCTCCAAAATATGCTTAA 59.903 41.667 0.00 0.00 44.67 1.85
88 89 3.630312 GGAACGCCTCCAAAATATGCTTA 59.370 43.478 0.00 0.00 44.67 3.09
89 90 2.427095 GGAACGCCTCCAAAATATGCTT 59.573 45.455 0.00 0.00 44.67 3.91
90 91 2.024414 GGAACGCCTCCAAAATATGCT 58.976 47.619 0.00 0.00 44.67 3.79
91 92 2.492019 GGAACGCCTCCAAAATATGC 57.508 50.000 0.00 0.00 44.67 3.14
103 104 1.429148 CGGCACTTATGAGGAACGCC 61.429 60.000 0.00 0.00 34.68 5.68
104 105 1.429148 CCGGCACTTATGAGGAACGC 61.429 60.000 0.00 0.00 0.00 4.84
105 106 1.429148 GCCGGCACTTATGAGGAACG 61.429 60.000 24.80 0.00 0.00 3.95
106 107 0.107654 AGCCGGCACTTATGAGGAAC 60.108 55.000 31.54 0.00 0.00 3.62
107 108 1.491668 TAGCCGGCACTTATGAGGAA 58.508 50.000 31.54 0.00 0.00 3.36
108 109 1.138266 GTTAGCCGGCACTTATGAGGA 59.862 52.381 31.54 0.00 0.00 3.71
109 110 1.134521 TGTTAGCCGGCACTTATGAGG 60.135 52.381 31.54 0.00 0.00 3.86
110 111 2.309528 TGTTAGCCGGCACTTATGAG 57.690 50.000 31.54 0.00 0.00 2.90
111 112 2.627945 CTTGTTAGCCGGCACTTATGA 58.372 47.619 31.54 0.00 0.00 2.15
112 113 1.670811 CCTTGTTAGCCGGCACTTATG 59.329 52.381 31.54 14.06 0.00 1.90
113 114 1.408266 CCCTTGTTAGCCGGCACTTAT 60.408 52.381 31.54 10.27 0.00 1.73
114 115 0.035820 CCCTTGTTAGCCGGCACTTA 60.036 55.000 31.54 9.92 0.00 2.24
115 116 1.303317 CCCTTGTTAGCCGGCACTT 60.303 57.895 31.54 11.17 0.00 3.16
116 117 2.351276 CCCTTGTTAGCCGGCACT 59.649 61.111 31.54 12.06 0.00 4.40
117 118 3.440415 GCCCTTGTTAGCCGGCAC 61.440 66.667 31.54 20.07 41.25 5.01
118 119 4.733542 GGCCCTTGTTAGCCGGCA 62.734 66.667 31.54 12.31 43.50 5.69
123 124 1.546029 CCTTCAAAGGCCCTTGTTAGC 59.454 52.381 13.80 0.00 39.76 3.09
135 136 2.357637 TCTGGACAAAACGCCTTCAAAG 59.642 45.455 0.00 0.00 0.00 2.77
136 137 2.370349 TCTGGACAAAACGCCTTCAAA 58.630 42.857 0.00 0.00 0.00 2.69
137 138 2.045561 TCTGGACAAAACGCCTTCAA 57.954 45.000 0.00 0.00 0.00 2.69
138 139 1.673920 GTTCTGGACAAAACGCCTTCA 59.326 47.619 0.00 0.00 0.00 3.02
139 140 1.333791 CGTTCTGGACAAAACGCCTTC 60.334 52.381 0.00 0.00 41.34 3.46
140 141 0.661020 CGTTCTGGACAAAACGCCTT 59.339 50.000 0.00 0.00 41.34 4.35
141 142 2.317230 CGTTCTGGACAAAACGCCT 58.683 52.632 0.00 0.00 41.34 5.52
142 143 4.914291 CGTTCTGGACAAAACGCC 57.086 55.556 0.00 0.00 41.34 5.68
145 146 2.863401 AAAGGCGTTCTGGACAAAAC 57.137 45.000 0.00 0.00 0.00 2.43
146 147 4.202070 CCTTTAAAGGCGTTCTGGACAAAA 60.202 41.667 21.07 0.00 39.76 2.44
147 148 3.316868 CCTTTAAAGGCGTTCTGGACAAA 59.683 43.478 21.07 0.00 39.76 2.83
148 149 2.882137 CCTTTAAAGGCGTTCTGGACAA 59.118 45.455 21.07 0.00 39.76 3.18
149 150 2.500229 CCTTTAAAGGCGTTCTGGACA 58.500 47.619 21.07 0.00 39.76 4.02
150 151 1.810755 CCCTTTAAAGGCGTTCTGGAC 59.189 52.381 26.30 0.00 45.10 4.02
151 152 1.700739 TCCCTTTAAAGGCGTTCTGGA 59.299 47.619 26.30 14.39 45.10 3.86
152 153 2.084546 CTCCCTTTAAAGGCGTTCTGG 58.915 52.381 26.30 12.42 45.10 3.86
153 154 2.084546 CCTCCCTTTAAAGGCGTTCTG 58.915 52.381 26.30 13.08 45.10 3.02
154 155 1.703513 ACCTCCCTTTAAAGGCGTTCT 59.296 47.619 26.30 6.33 45.10 3.01
155 156 2.195741 ACCTCCCTTTAAAGGCGTTC 57.804 50.000 26.30 0.00 45.10 3.95
156 157 3.793819 TTACCTCCCTTTAAAGGCGTT 57.206 42.857 26.30 13.28 45.10 4.84
157 158 3.522343 AGATTACCTCCCTTTAAAGGCGT 59.478 43.478 26.30 21.65 45.10 5.68
158 159 4.152284 AGATTACCTCCCTTTAAAGGCG 57.848 45.455 26.30 19.29 45.10 5.52
159 160 6.062749 CCTTAGATTACCTCCCTTTAAAGGC 58.937 44.000 26.30 11.59 45.10 4.35
160 161 6.062749 GCCTTAGATTACCTCCCTTTAAAGG 58.937 44.000 25.02 25.02 46.06 3.11
161 162 6.542735 GTGCCTTAGATTACCTCCCTTTAAAG 59.457 42.308 8.32 8.32 0.00 1.85
162 163 6.216868 AGTGCCTTAGATTACCTCCCTTTAAA 59.783 38.462 0.00 0.00 0.00 1.52
163 164 5.729718 AGTGCCTTAGATTACCTCCCTTTAA 59.270 40.000 0.00 0.00 0.00 1.52
164 165 5.286221 AGTGCCTTAGATTACCTCCCTTTA 58.714 41.667 0.00 0.00 0.00 1.85
165 166 4.112331 AGTGCCTTAGATTACCTCCCTTT 58.888 43.478 0.00 0.00 0.00 3.11
166 167 3.737263 AGTGCCTTAGATTACCTCCCTT 58.263 45.455 0.00 0.00 0.00 3.95
167 168 3.423058 AGTGCCTTAGATTACCTCCCT 57.577 47.619 0.00 0.00 0.00 4.20
168 169 4.505324 AAAGTGCCTTAGATTACCTCCC 57.495 45.455 0.00 0.00 0.00 4.30
188 189 6.041523 AGGCACTTTCTACAAGGCAATAAAAA 59.958 34.615 0.00 0.00 27.25 1.94
189 190 5.538433 AGGCACTTTCTACAAGGCAATAAAA 59.462 36.000 0.00 0.00 27.25 1.52
190 191 5.076873 AGGCACTTTCTACAAGGCAATAAA 58.923 37.500 0.00 0.00 27.25 1.40
191 192 4.662278 AGGCACTTTCTACAAGGCAATAA 58.338 39.130 0.00 0.00 27.25 1.40
192 193 4.019321 AGAGGCACTTTCTACAAGGCAATA 60.019 41.667 0.00 0.00 41.55 1.90
193 194 3.084786 GAGGCACTTTCTACAAGGCAAT 58.915 45.455 0.00 0.00 41.55 3.56
194 195 2.106511 AGAGGCACTTTCTACAAGGCAA 59.893 45.455 0.00 0.00 41.55 4.52
195 196 1.699634 AGAGGCACTTTCTACAAGGCA 59.300 47.619 0.00 0.00 41.55 4.75
196 197 2.079925 CAGAGGCACTTTCTACAAGGC 58.920 52.381 0.00 0.00 41.55 4.35
197 198 3.409026 ACAGAGGCACTTTCTACAAGG 57.591 47.619 0.00 0.00 41.55 3.61
198 199 5.059833 AGAAACAGAGGCACTTTCTACAAG 58.940 41.667 0.00 0.00 41.55 3.16
199 200 5.036117 AGAAACAGAGGCACTTTCTACAA 57.964 39.130 0.00 0.00 41.55 2.41
200 201 4.345257 AGAGAAACAGAGGCACTTTCTACA 59.655 41.667 0.00 0.00 41.55 2.74
201 202 4.888917 AGAGAAACAGAGGCACTTTCTAC 58.111 43.478 0.00 0.00 41.55 2.59
202 203 5.047235 GGTAGAGAAACAGAGGCACTTTCTA 60.047 44.000 0.00 0.00 41.55 2.10
203 204 4.262678 GGTAGAGAAACAGAGGCACTTTCT 60.263 45.833 0.00 0.00 41.55 2.52
204 205 3.997681 GGTAGAGAAACAGAGGCACTTTC 59.002 47.826 0.00 0.00 41.55 2.62
205 206 3.555168 CGGTAGAGAAACAGAGGCACTTT 60.555 47.826 0.00 0.00 41.55 2.66
206 207 2.028930 CGGTAGAGAAACAGAGGCACTT 60.029 50.000 0.00 0.00 41.55 3.16
208 209 1.272769 ACGGTAGAGAAACAGAGGCAC 59.727 52.381 0.00 0.00 0.00 5.01
209 210 1.629043 ACGGTAGAGAAACAGAGGCA 58.371 50.000 0.00 0.00 0.00 4.75
210 211 2.477525 CGTACGGTAGAGAAACAGAGGC 60.478 54.545 7.57 0.00 0.00 4.70
211 212 2.746362 ACGTACGGTAGAGAAACAGAGG 59.254 50.000 21.06 0.00 0.00 3.69
212 213 3.188048 ACACGTACGGTAGAGAAACAGAG 59.812 47.826 21.06 0.00 0.00 3.35
213 214 3.141398 ACACGTACGGTAGAGAAACAGA 58.859 45.455 21.06 0.00 0.00 3.41
214 215 3.549299 ACACGTACGGTAGAGAAACAG 57.451 47.619 21.06 0.00 0.00 3.16
215 216 3.066621 ACAACACGTACGGTAGAGAAACA 59.933 43.478 21.06 0.00 0.00 2.83
216 217 3.632189 ACAACACGTACGGTAGAGAAAC 58.368 45.455 21.06 0.00 0.00 2.78
217 218 3.988379 ACAACACGTACGGTAGAGAAA 57.012 42.857 21.06 0.00 0.00 2.52
218 219 4.404507 GTACAACACGTACGGTAGAGAA 57.595 45.455 21.06 0.00 41.13 2.87
228 229 6.098679 ACTACAACAAACAGTACAACACGTA 58.901 36.000 0.00 0.00 0.00 3.57
229 230 4.931002 ACTACAACAAACAGTACAACACGT 59.069 37.500 0.00 0.00 0.00 4.49
230 231 5.459110 ACTACAACAAACAGTACAACACG 57.541 39.130 0.00 0.00 0.00 4.49
231 232 9.853921 GTTATACTACAACAAACAGTACAACAC 57.146 33.333 0.00 0.00 34.07 3.32
232 233 9.044150 GGTTATACTACAACAAACAGTACAACA 57.956 33.333 0.00 0.00 35.07 3.33
233 234 9.044150 TGGTTATACTACAACAAACAGTACAAC 57.956 33.333 0.00 0.00 33.46 3.32
234 235 9.610705 TTGGTTATACTACAACAAACAGTACAA 57.389 29.630 0.00 0.00 0.00 2.41
235 236 9.781633 ATTGGTTATACTACAACAAACAGTACA 57.218 29.630 0.00 0.00 0.00 2.90
238 239 9.223099 GGTATTGGTTATACTACAACAAACAGT 57.777 33.333 0.00 0.00 39.30 3.55
239 240 9.444600 AGGTATTGGTTATACTACAACAAACAG 57.555 33.333 0.00 0.00 39.30 3.16
240 241 9.796180 AAGGTATTGGTTATACTACAACAAACA 57.204 29.630 0.00 0.00 39.30 2.83
242 243 8.732531 GCAAGGTATTGGTTATACTACAACAAA 58.267 33.333 0.00 0.00 39.30 2.83
243 244 8.104566 AGCAAGGTATTGGTTATACTACAACAA 58.895 33.333 0.00 0.00 44.57 2.83
244 245 7.626390 AGCAAGGTATTGGTTATACTACAACA 58.374 34.615 0.00 0.00 44.57 3.33
245 246 7.767198 TGAGCAAGGTATTGGTTATACTACAAC 59.233 37.037 0.00 0.00 46.79 3.32
246 247 7.853299 TGAGCAAGGTATTGGTTATACTACAA 58.147 34.615 0.00 0.00 46.79 2.41
247 248 7.426606 TGAGCAAGGTATTGGTTATACTACA 57.573 36.000 0.00 0.00 46.79 2.74
248 249 7.095187 GCATGAGCAAGGTATTGGTTATACTAC 60.095 40.741 0.00 0.00 46.79 2.73
249 250 6.934645 GCATGAGCAAGGTATTGGTTATACTA 59.065 38.462 0.00 0.00 46.79 1.82
250 251 5.765182 GCATGAGCAAGGTATTGGTTATACT 59.235 40.000 0.00 0.00 46.79 2.12
251 252 6.002062 GCATGAGCAAGGTATTGGTTATAC 57.998 41.667 0.00 0.00 46.79 1.47
278 279 1.878656 AAGGTGAGAGGAACGCGGAG 61.879 60.000 12.47 0.00 0.00 4.63
279 280 1.874345 GAAGGTGAGAGGAACGCGGA 61.874 60.000 12.47 0.00 0.00 5.54
280 281 1.446272 GAAGGTGAGAGGAACGCGG 60.446 63.158 12.47 0.00 0.00 6.46
281 282 1.446272 GGAAGGTGAGAGGAACGCG 60.446 63.158 3.53 3.53 0.00 6.01
282 283 0.670854 GTGGAAGGTGAGAGGAACGC 60.671 60.000 0.00 0.00 0.00 4.84
283 284 0.679505 TGTGGAAGGTGAGAGGAACG 59.320 55.000 0.00 0.00 0.00 3.95
284 285 1.694696 ACTGTGGAAGGTGAGAGGAAC 59.305 52.381 0.00 0.00 0.00 3.62
285 286 1.694150 CACTGTGGAAGGTGAGAGGAA 59.306 52.381 0.00 0.00 35.69 3.36
286 287 1.342074 CACTGTGGAAGGTGAGAGGA 58.658 55.000 0.00 0.00 35.69 3.71
287 288 1.051812 ACACTGTGGAAGGTGAGAGG 58.948 55.000 13.09 0.00 37.22 3.69
288 289 2.160822 CACACTGTGGAAGGTGAGAG 57.839 55.000 13.09 0.00 37.22 3.20
299 300 3.879295 AGTTTGACAAGATCCACACTGTG 59.121 43.478 6.19 6.19 0.00 3.66
300 301 4.130118 GAGTTTGACAAGATCCACACTGT 58.870 43.478 0.00 0.00 0.00 3.55
301 302 4.129380 TGAGTTTGACAAGATCCACACTG 58.871 43.478 0.00 0.00 0.00 3.66
302 303 4.422073 TGAGTTTGACAAGATCCACACT 57.578 40.909 0.00 0.00 0.00 3.55
303 304 4.154918 GGATGAGTTTGACAAGATCCACAC 59.845 45.833 10.49 0.00 0.00 3.82
304 305 4.042062 AGGATGAGTTTGACAAGATCCACA 59.958 41.667 14.90 0.00 0.00 4.17
305 306 4.583871 AGGATGAGTTTGACAAGATCCAC 58.416 43.478 14.90 1.18 0.00 4.02
306 307 4.916041 AGGATGAGTTTGACAAGATCCA 57.084 40.909 14.90 3.54 0.00 3.41
307 308 6.644347 TCTAAGGATGAGTTTGACAAGATCC 58.356 40.000 0.00 0.00 0.00 3.36
308 309 9.255304 GTATCTAAGGATGAGTTTGACAAGATC 57.745 37.037 0.00 0.00 33.71 2.75
309 310 8.207545 GGTATCTAAGGATGAGTTTGACAAGAT 58.792 37.037 0.00 0.00 33.71 2.40
310 311 7.400339 AGGTATCTAAGGATGAGTTTGACAAGA 59.600 37.037 0.00 0.00 33.71 3.02
311 312 7.560368 AGGTATCTAAGGATGAGTTTGACAAG 58.440 38.462 0.00 0.00 33.71 3.16
312 313 7.496346 AGGTATCTAAGGATGAGTTTGACAA 57.504 36.000 0.00 0.00 33.71 3.18
313 314 7.496346 AAGGTATCTAAGGATGAGTTTGACA 57.504 36.000 0.00 0.00 33.71 3.58
314 315 9.535878 CTTAAGGTATCTAAGGATGAGTTTGAC 57.464 37.037 0.00 0.00 33.71 3.18
315 316 8.705594 CCTTAAGGTATCTAAGGATGAGTTTGA 58.294 37.037 13.83 0.00 42.11 2.69
316 317 7.934120 CCCTTAAGGTATCTAAGGATGAGTTTG 59.066 40.741 20.22 0.00 42.11 2.93
317 318 7.420330 GCCCTTAAGGTATCTAAGGATGAGTTT 60.420 40.741 20.22 0.00 42.11 2.66
318 319 6.043358 GCCCTTAAGGTATCTAAGGATGAGTT 59.957 42.308 20.22 0.00 42.11 3.01
319 320 5.544562 GCCCTTAAGGTATCTAAGGATGAGT 59.455 44.000 20.22 0.00 42.11 3.41
320 321 5.544176 TGCCCTTAAGGTATCTAAGGATGAG 59.456 44.000 20.22 0.84 42.11 2.90
321 322 5.307196 GTGCCCTTAAGGTATCTAAGGATGA 59.693 44.000 20.22 0.00 42.11 2.92
322 323 5.308237 AGTGCCCTTAAGGTATCTAAGGATG 59.692 44.000 20.22 1.47 42.11 3.51
323 324 5.308237 CAGTGCCCTTAAGGTATCTAAGGAT 59.692 44.000 20.22 0.00 42.11 3.24
324 325 4.654262 CAGTGCCCTTAAGGTATCTAAGGA 59.346 45.833 20.22 1.33 42.11 3.36
325 326 4.409247 ACAGTGCCCTTAAGGTATCTAAGG 59.591 45.833 20.22 3.42 39.91 2.69
326 327 5.360591 CACAGTGCCCTTAAGGTATCTAAG 58.639 45.833 20.22 4.15 38.26 2.18
327 328 4.163458 CCACAGTGCCCTTAAGGTATCTAA 59.837 45.833 20.22 0.00 38.26 2.10
328 329 3.709653 CCACAGTGCCCTTAAGGTATCTA 59.290 47.826 20.22 0.00 38.26 1.98
329 330 2.505819 CCACAGTGCCCTTAAGGTATCT 59.494 50.000 20.22 11.40 38.26 1.98
330 331 2.504175 TCCACAGTGCCCTTAAGGTATC 59.496 50.000 20.22 9.35 38.26 2.24
331 332 2.557869 TCCACAGTGCCCTTAAGGTAT 58.442 47.619 20.22 0.17 38.26 2.73
332 333 2.032965 TCCACAGTGCCCTTAAGGTA 57.967 50.000 20.22 6.20 38.26 3.08
333 334 1.282157 GATCCACAGTGCCCTTAAGGT 59.718 52.381 20.22 0.00 38.26 3.50
334 335 1.561542 AGATCCACAGTGCCCTTAAGG 59.438 52.381 15.14 15.14 39.47 2.69
335 336 3.012518 CAAGATCCACAGTGCCCTTAAG 58.987 50.000 0.00 0.00 0.00 1.85
336 337 2.290896 CCAAGATCCACAGTGCCCTTAA 60.291 50.000 0.00 0.00 0.00 1.85
337 338 1.281867 CCAAGATCCACAGTGCCCTTA 59.718 52.381 0.00 0.00 0.00 2.69
338 339 0.038744 CCAAGATCCACAGTGCCCTT 59.961 55.000 0.00 0.00 0.00 3.95
339 340 1.687612 CCAAGATCCACAGTGCCCT 59.312 57.895 0.00 0.00 0.00 5.19
340 341 1.379044 CCCAAGATCCACAGTGCCC 60.379 63.158 0.00 0.00 0.00 5.36
341 342 2.048603 GCCCAAGATCCACAGTGCC 61.049 63.158 0.00 0.00 0.00 5.01
342 343 0.253044 TAGCCCAAGATCCACAGTGC 59.747 55.000 0.00 0.00 0.00 4.40
343 344 1.278985 TGTAGCCCAAGATCCACAGTG 59.721 52.381 0.00 0.00 0.00 3.66
344 345 1.279271 GTGTAGCCCAAGATCCACAGT 59.721 52.381 0.00 0.00 0.00 3.55
345 346 1.278985 TGTGTAGCCCAAGATCCACAG 59.721 52.381 0.00 0.00 0.00 3.66
346 347 1.357137 TGTGTAGCCCAAGATCCACA 58.643 50.000 0.00 0.00 0.00 4.17
347 348 2.684881 CAATGTGTAGCCCAAGATCCAC 59.315 50.000 0.00 0.00 0.00 4.02
348 349 2.575735 TCAATGTGTAGCCCAAGATCCA 59.424 45.455 0.00 0.00 0.00 3.41
349 350 2.945668 GTCAATGTGTAGCCCAAGATCC 59.054 50.000 0.00 0.00 0.00 3.36
350 351 2.609459 CGTCAATGTGTAGCCCAAGATC 59.391 50.000 0.00 0.00 0.00 2.75
351 352 2.632377 CGTCAATGTGTAGCCCAAGAT 58.368 47.619 0.00 0.00 0.00 2.40
352 353 1.338674 CCGTCAATGTGTAGCCCAAGA 60.339 52.381 0.00 0.00 0.00 3.02
353 354 1.086696 CCGTCAATGTGTAGCCCAAG 58.913 55.000 0.00 0.00 0.00 3.61
354 355 0.687920 TCCGTCAATGTGTAGCCCAA 59.312 50.000 0.00 0.00 0.00 4.12
355 356 0.036765 GTCCGTCAATGTGTAGCCCA 60.037 55.000 0.00 0.00 0.00 5.36
356 357 1.082117 CGTCCGTCAATGTGTAGCCC 61.082 60.000 0.00 0.00 0.00 5.19
357 358 1.082117 CCGTCCGTCAATGTGTAGCC 61.082 60.000 0.00 0.00 0.00 3.93
358 359 1.693083 GCCGTCCGTCAATGTGTAGC 61.693 60.000 0.00 0.00 0.00 3.58
359 360 1.082117 GGCCGTCCGTCAATGTGTAG 61.082 60.000 0.00 0.00 0.00 2.74
360 361 1.079681 GGCCGTCCGTCAATGTGTA 60.080 57.895 0.00 0.00 0.00 2.90
361 362 2.358247 GGCCGTCCGTCAATGTGT 60.358 61.111 0.00 0.00 0.00 3.72
390 391 2.026014 AAACTTTGCGTGCTGCCG 59.974 55.556 0.00 1.33 45.60 5.69
391 392 3.616595 CAAACTTTGCGTGCTGCC 58.383 55.556 0.00 0.00 45.60 4.85
400 401 1.535462 CGTACCCTGGAGCAAACTTTG 59.465 52.381 0.00 0.00 0.00 2.77
401 402 1.142262 ACGTACCCTGGAGCAAACTTT 59.858 47.619 0.00 0.00 0.00 2.66
402 403 0.763035 ACGTACCCTGGAGCAAACTT 59.237 50.000 0.00 0.00 0.00 2.66
403 404 1.274447 GTACGTACCCTGGAGCAAACT 59.726 52.381 15.00 0.00 0.00 2.66
404 405 1.718396 GTACGTACCCTGGAGCAAAC 58.282 55.000 15.00 0.00 0.00 2.93
405 406 0.244450 CGTACGTACCCTGGAGCAAA 59.756 55.000 19.67 0.00 0.00 3.68
406 407 0.895100 ACGTACGTACCCTGGAGCAA 60.895 55.000 21.41 0.00 0.00 3.91
407 408 1.303561 ACGTACGTACCCTGGAGCA 60.304 57.895 21.41 0.00 0.00 4.26
408 409 1.138247 CACGTACGTACCCTGGAGC 59.862 63.158 22.34 0.00 0.00 4.70
409 410 0.962356 ACCACGTACGTACCCTGGAG 60.962 60.000 30.46 16.04 0.00 3.86
410 411 0.960364 GACCACGTACGTACCCTGGA 60.960 60.000 30.46 0.00 0.00 3.86
411 412 1.508088 GACCACGTACGTACCCTGG 59.492 63.158 25.41 25.41 0.00 4.45
412 413 1.135315 CGACCACGTACGTACCCTG 59.865 63.158 22.34 14.22 34.56 4.45
413 414 2.040544 CCGACCACGTACGTACCCT 61.041 63.158 22.34 3.19 37.88 4.34
414 415 2.485122 CCGACCACGTACGTACCC 59.515 66.667 22.34 11.38 37.88 3.69
415 416 2.485122 CCCGACCACGTACGTACC 59.515 66.667 22.34 11.74 37.88 3.34
416 417 2.202479 GCCCGACCACGTACGTAC 60.202 66.667 22.34 15.90 37.88 3.67
417 418 2.529454 TAGGCCCGACCACGTACGTA 62.529 60.000 22.34 0.00 43.14 3.57
418 419 3.918253 TAGGCCCGACCACGTACGT 62.918 63.158 16.72 16.72 43.14 3.57
419 420 2.699768 TTAGGCCCGACCACGTACG 61.700 63.158 15.01 15.01 43.14 3.67
420 421 1.153765 GTTAGGCCCGACCACGTAC 60.154 63.158 0.00 0.00 43.14 3.67
421 422 2.699768 CGTTAGGCCCGACCACGTA 61.700 63.158 0.00 0.00 43.14 3.57
422 423 4.060038 CGTTAGGCCCGACCACGT 62.060 66.667 0.00 0.00 43.14 4.49
424 425 4.382320 TGCGTTAGGCCCGACCAC 62.382 66.667 0.00 0.00 43.14 4.16
425 426 4.382320 GTGCGTTAGGCCCGACCA 62.382 66.667 0.00 0.00 43.14 4.02
427 428 3.340953 TACGTGCGTTAGGCCCGAC 62.341 63.158 8.86 0.00 45.92 4.79
428 429 3.061231 TACGTGCGTTAGGCCCGA 61.061 61.111 8.86 0.00 45.92 5.14
430 431 2.882301 CGTACGTGCGTTAGGCCC 60.882 66.667 18.32 0.00 42.61 5.80
431 432 3.548231 GCGTACGTGCGTTAGGCC 61.548 66.667 26.31 5.64 42.61 5.19
449 450 3.047877 CCTTTGACCGTCCCGCAC 61.048 66.667 0.00 0.00 0.00 5.34
450 451 3.234630 CTCCTTTGACCGTCCCGCA 62.235 63.158 0.00 0.00 0.00 5.69
451 452 2.434359 CTCCTTTGACCGTCCCGC 60.434 66.667 0.00 0.00 0.00 6.13
452 453 1.215647 CTCTCCTTTGACCGTCCCG 59.784 63.158 0.00 0.00 0.00 5.14
453 454 0.533032 CTCTCTCCTTTGACCGTCCC 59.467 60.000 0.00 0.00 0.00 4.46
454 455 1.258676 ACTCTCTCCTTTGACCGTCC 58.741 55.000 0.00 0.00 0.00 4.79
455 456 2.159544 CGTACTCTCTCCTTTGACCGTC 60.160 54.545 0.00 0.00 0.00 4.79
456 457 1.811359 CGTACTCTCTCCTTTGACCGT 59.189 52.381 0.00 0.00 0.00 4.83
457 458 1.811359 ACGTACTCTCTCCTTTGACCG 59.189 52.381 0.00 0.00 0.00 4.79
458 459 2.094649 CCACGTACTCTCTCCTTTGACC 60.095 54.545 0.00 0.00 0.00 4.02
459 460 2.557490 ACCACGTACTCTCTCCTTTGAC 59.443 50.000 0.00 0.00 0.00 3.18
460 461 2.872732 ACCACGTACTCTCTCCTTTGA 58.127 47.619 0.00 0.00 0.00 2.69
461 462 3.662247 AACCACGTACTCTCTCCTTTG 57.338 47.619 0.00 0.00 0.00 2.77
462 463 3.802675 GCAAACCACGTACTCTCTCCTTT 60.803 47.826 0.00 0.00 0.00 3.11
463 464 2.288886 GCAAACCACGTACTCTCTCCTT 60.289 50.000 0.00 0.00 0.00 3.36
464 465 1.272769 GCAAACCACGTACTCTCTCCT 59.727 52.381 0.00 0.00 0.00 3.69
465 466 1.000506 TGCAAACCACGTACTCTCTCC 59.999 52.381 0.00 0.00 0.00 3.71
466 467 2.059541 GTGCAAACCACGTACTCTCTC 58.940 52.381 0.00 0.00 34.22 3.20
467 468 2.150397 GTGCAAACCACGTACTCTCT 57.850 50.000 0.00 0.00 34.22 3.10
476 477 3.015677 TGCGTACGTGCAAACCAC 58.984 55.556 17.90 0.00 43.02 4.16
482 483 2.355363 GTCCTGTGCGTACGTGCA 60.355 61.111 17.90 14.42 43.95 4.57
483 484 3.467119 CGTCCTGTGCGTACGTGC 61.467 66.667 17.90 10.45 32.16 5.34
484 485 3.467119 GCGTCCTGTGCGTACGTG 61.467 66.667 17.90 5.06 38.81 4.49
551 996 3.924114 TTCACCTTTGTGTCTCCTTCA 57.076 42.857 0.00 0.00 43.26 3.02
627 1072 3.818787 GATGCTGGTTGGCTGGCG 61.819 66.667 0.00 0.00 0.00 5.69
692 1158 9.402320 TGCATGGTGAAAGCTATTAGTATTTAA 57.598 29.630 0.00 0.00 33.76 1.52
694 1160 7.880160 TGCATGGTGAAAGCTATTAGTATTT 57.120 32.000 0.00 0.00 33.76 1.40
698 1164 6.780457 AATTGCATGGTGAAAGCTATTAGT 57.220 33.333 0.00 0.00 33.27 2.24
699 1165 9.754382 AATAAATTGCATGGTGAAAGCTATTAG 57.246 29.630 0.00 0.00 33.76 1.73
705 1172 8.170553 CAGTAAAATAAATTGCATGGTGAAAGC 58.829 33.333 0.00 0.00 0.00 3.51
724 1191 7.431376 CGAGAAACACGAGATATAGCAGTAAAA 59.569 37.037 0.00 0.00 0.00 1.52
726 1193 6.037940 ACGAGAAACACGAGATATAGCAGTAA 59.962 38.462 0.00 0.00 34.70 2.24
727 1194 5.526479 ACGAGAAACACGAGATATAGCAGTA 59.474 40.000 0.00 0.00 34.70 2.74
728 1195 4.335874 ACGAGAAACACGAGATATAGCAGT 59.664 41.667 0.00 0.00 34.70 4.40
729 1196 4.849883 ACGAGAAACACGAGATATAGCAG 58.150 43.478 0.00 0.00 34.70 4.24
730 1197 4.575236 AGACGAGAAACACGAGATATAGCA 59.425 41.667 0.00 0.00 34.70 3.49
731 1198 5.098218 AGACGAGAAACACGAGATATAGC 57.902 43.478 0.00 0.00 34.70 2.97
732 1199 9.356433 TCTATAGACGAGAAACACGAGATATAG 57.644 37.037 0.00 0.00 33.64 1.31
733 1200 9.356433 CTCTATAGACGAGAAACACGAGATATA 57.644 37.037 0.00 0.00 34.70 0.86
734 1201 7.332430 CCTCTATAGACGAGAAACACGAGATAT 59.668 40.741 0.00 0.00 34.70 1.63
736 1203 5.467399 CCTCTATAGACGAGAAACACGAGAT 59.533 44.000 0.00 0.00 34.70 2.75
737 1204 4.809958 CCTCTATAGACGAGAAACACGAGA 59.190 45.833 0.00 0.00 34.70 4.04
738 1205 4.809958 TCCTCTATAGACGAGAAACACGAG 59.190 45.833 0.00 0.00 34.70 4.18
750 1221 7.227910 CGCCTTCCTATTATCTCCTCTATAGAC 59.772 44.444 0.00 0.00 0.00 2.59
753 1224 6.829298 CACGCCTTCCTATTATCTCCTCTATA 59.171 42.308 0.00 0.00 0.00 1.31
755 1226 5.010933 CACGCCTTCCTATTATCTCCTCTA 58.989 45.833 0.00 0.00 0.00 2.43
757 1228 3.827302 TCACGCCTTCCTATTATCTCCTC 59.173 47.826 0.00 0.00 0.00 3.71
761 1234 3.307059 GCCATCACGCCTTCCTATTATCT 60.307 47.826 0.00 0.00 0.00 1.98
771 1244 1.315257 GGAATGTGCCATCACGCCTT 61.315 55.000 0.00 0.00 46.01 4.35
859 1332 3.423154 GTGTACAGCCAGCGCCAC 61.423 66.667 2.29 0.00 34.57 5.01
904 1377 6.839820 ATAATAAAAAGGAAGCCGTAGACG 57.160 37.500 0.00 0.00 39.44 4.18
926 1419 7.325694 CAAAAGAAGAAGGCATGGTGAATAAT 58.674 34.615 0.00 0.00 0.00 1.28
927 1420 6.690530 CAAAAGAAGAAGGCATGGTGAATAA 58.309 36.000 0.00 0.00 0.00 1.40
928 1421 5.336690 GCAAAAGAAGAAGGCATGGTGAATA 60.337 40.000 0.00 0.00 0.00 1.75
929 1422 4.562143 GCAAAAGAAGAAGGCATGGTGAAT 60.562 41.667 0.00 0.00 0.00 2.57
930 1423 3.243839 GCAAAAGAAGAAGGCATGGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
936 1429 2.318908 TGTGGCAAAAGAAGAAGGCAT 58.681 42.857 0.00 0.00 38.82 4.40
939 1432 3.375782 CCTTGTGGCAAAAGAAGAAGG 57.624 47.619 19.09 0.25 0.00 3.46
952 1445 0.034186 TTAGGATGCCTGCCTTGTGG 60.034 55.000 0.00 0.00 36.96 4.17
953 1446 1.952296 GATTAGGATGCCTGCCTTGTG 59.048 52.381 0.00 0.00 36.96 3.33
954 1447 1.133668 GGATTAGGATGCCTGCCTTGT 60.134 52.381 0.00 0.00 36.96 3.16
956 1449 0.480252 GGGATTAGGATGCCTGCCTT 59.520 55.000 0.00 0.00 40.40 4.35
957 1450 0.698886 TGGGATTAGGATGCCTGCCT 60.699 55.000 0.00 0.00 43.69 4.75
958 1451 0.185901 TTGGGATTAGGATGCCTGCC 59.814 55.000 0.00 0.00 43.69 4.85
959 1452 1.959282 CTTTGGGATTAGGATGCCTGC 59.041 52.381 0.00 0.00 43.69 4.85
960 1453 1.959282 GCTTTGGGATTAGGATGCCTG 59.041 52.381 0.00 0.00 43.69 4.85
961 1454 1.570501 TGCTTTGGGATTAGGATGCCT 59.429 47.619 0.00 0.00 43.69 4.75
962 1455 2.071778 TGCTTTGGGATTAGGATGCC 57.928 50.000 0.00 0.00 43.61 4.40
963 1456 2.363359 CCTTGCTTTGGGATTAGGATGC 59.637 50.000 0.00 0.00 0.00 3.91
980 1473 1.139654 TCGCCATTGATCTCTCCCTTG 59.860 52.381 0.00 0.00 0.00 3.61
988 1481 0.839277 TGGTCCATCGCCATTGATCT 59.161 50.000 0.00 0.00 0.00 2.75
1082 1643 2.907042 ACCTCTTGGTCTGGGTAAGAAG 59.093 50.000 0.00 0.00 44.78 2.85
1083 1644 2.986050 ACCTCTTGGTCTGGGTAAGAA 58.014 47.619 0.00 0.00 44.78 2.52
1084 1645 2.715763 ACCTCTTGGTCTGGGTAAGA 57.284 50.000 0.00 0.00 44.78 2.10
1120 1681 2.494073 GAGAAGAAGGCGGAGAGAAGAA 59.506 50.000 0.00 0.00 0.00 2.52
1142 1703 7.387673 CACTAGAGTGTCAATCAACAACCATTA 59.612 37.037 2.72 0.00 40.96 1.90
1143 1704 6.205464 CACTAGAGTGTCAATCAACAACCATT 59.795 38.462 2.72 0.00 40.96 3.16
1144 1705 5.702670 CACTAGAGTGTCAATCAACAACCAT 59.297 40.000 2.72 0.00 40.96 3.55
1145 1706 5.056480 CACTAGAGTGTCAATCAACAACCA 58.944 41.667 2.72 0.00 40.96 3.67
1163 1822 6.704050 TCAAGATCTACAGACGATCTCACTAG 59.296 42.308 0.00 0.00 45.02 2.57
1177 1836 3.506067 TCAACGTCTGCTCAAGATCTACA 59.494 43.478 0.00 0.00 37.23 2.74
1178 1837 4.098055 TCAACGTCTGCTCAAGATCTAC 57.902 45.455 0.00 0.00 37.23 2.59
1208 1867 2.239654 TCTCACCCAATGGAAGATCACC 59.760 50.000 0.00 0.00 34.81 4.02
1209 1868 3.634397 TCTCACCCAATGGAAGATCAC 57.366 47.619 0.00 0.00 34.81 3.06
1318 2031 3.710722 CGCACCTCCTCCTTGGCT 61.711 66.667 0.00 0.00 35.26 4.75
1453 2181 2.280119 TCGCAGCTGCTTGACGTT 60.280 55.556 34.22 0.00 39.32 3.99
1480 2208 3.423154 GCGAAGGTTGGGACGCTG 61.423 66.667 0.00 0.00 46.06 5.18
1525 2301 3.200593 GCGATGGCTGTGCTCCTG 61.201 66.667 0.00 0.00 35.83 3.86
1526 2302 4.479993 GGCGATGGCTGTGCTCCT 62.480 66.667 0.00 0.00 39.81 3.69
1527 2303 2.665008 TATGGCGATGGCTGTGCTCC 62.665 60.000 0.00 0.00 39.81 4.70
1528 2304 1.226686 CTATGGCGATGGCTGTGCTC 61.227 60.000 0.00 0.00 39.81 4.26
1529 2305 1.227764 CTATGGCGATGGCTGTGCT 60.228 57.895 0.00 0.00 39.81 4.40
1530 2306 0.604780 ATCTATGGCGATGGCTGTGC 60.605 55.000 0.00 0.00 39.81 4.57
1531 2307 2.749280 TATCTATGGCGATGGCTGTG 57.251 50.000 0.00 0.00 39.81 3.66
1532 2308 2.833943 TGATATCTATGGCGATGGCTGT 59.166 45.455 3.98 0.00 39.81 4.40
1533 2309 3.455327 CTGATATCTATGGCGATGGCTG 58.545 50.000 3.98 0.00 39.81 4.85
1534 2310 2.433604 CCTGATATCTATGGCGATGGCT 59.566 50.000 3.98 0.00 39.81 4.75
1535 2311 2.432146 TCCTGATATCTATGGCGATGGC 59.568 50.000 3.98 0.00 38.90 4.40
1536 2312 3.492309 GCTCCTGATATCTATGGCGATGG 60.492 52.174 3.98 0.00 0.00 3.51
1537 2313 3.715495 GCTCCTGATATCTATGGCGATG 58.285 50.000 3.98 0.00 0.00 3.84
1538 2314 2.360483 CGCTCCTGATATCTATGGCGAT 59.640 50.000 20.21 0.00 43.25 4.58
1539 2315 1.745653 CGCTCCTGATATCTATGGCGA 59.254 52.381 20.21 2.49 43.25 5.54
1540 2316 1.800655 GCGCTCCTGATATCTATGGCG 60.801 57.143 20.40 20.40 43.40 5.69
1541 2317 1.800655 CGCGCTCCTGATATCTATGGC 60.801 57.143 5.56 3.23 0.00 4.40
1542 2318 1.800655 GCGCGCTCCTGATATCTATGG 60.801 57.143 26.67 4.20 0.00 2.74
1543 2319 1.554392 GCGCGCTCCTGATATCTATG 58.446 55.000 26.67 0.00 0.00 2.23
1544 2320 0.457851 GGCGCGCTCCTGATATCTAT 59.542 55.000 32.29 0.00 0.00 1.98
1545 2321 1.883732 GGCGCGCTCCTGATATCTA 59.116 57.895 32.29 0.00 0.00 1.98
1546 2322 2.653702 GGCGCGCTCCTGATATCT 59.346 61.111 32.29 0.00 0.00 1.98
1547 2323 2.807045 CGGCGCGCTCCTGATATC 60.807 66.667 32.29 9.74 0.00 1.63
1548 2324 3.151958 AACGGCGCGCTCCTGATAT 62.152 57.895 32.29 5.96 0.00 1.63
1549 2325 3.833645 AACGGCGCGCTCCTGATA 61.834 61.111 32.29 0.00 0.00 2.15
1560 2336 3.414700 GTGCTCCTGTCAACGGCG 61.415 66.667 4.80 4.80 0.00 6.46
1561 2337 2.280797 TGTGCTCCTGTCAACGGC 60.281 61.111 0.00 0.00 0.00 5.68
1562 2338 2.320587 GCTGTGCTCCTGTCAACGG 61.321 63.158 0.00 0.00 0.00 4.44
1563 2339 2.320587 GGCTGTGCTCCTGTCAACG 61.321 63.158 0.00 0.00 0.00 4.10
1564 2340 0.607489 ATGGCTGTGCTCCTGTCAAC 60.607 55.000 0.00 0.00 29.93 3.18
1565 2341 0.321919 GATGGCTGTGCTCCTGTCAA 60.322 55.000 0.00 0.00 29.93 3.18
1566 2342 1.297689 GATGGCTGTGCTCCTGTCA 59.702 57.895 0.00 0.00 0.00 3.58
1567 2343 1.812922 CGATGGCTGTGCTCCTGTC 60.813 63.158 0.00 0.00 0.00 3.51
1568 2344 2.267006 CGATGGCTGTGCTCCTGT 59.733 61.111 0.00 0.00 0.00 4.00
1569 2345 3.200593 GCGATGGCTGTGCTCCTG 61.201 66.667 0.00 0.00 35.83 3.86
1570 2346 4.479993 GGCGATGGCTGTGCTCCT 62.480 66.667 0.00 0.00 39.81 3.69
1571 2347 2.665008 TATGGCGATGGCTGTGCTCC 62.665 60.000 0.00 0.00 39.81 4.70
1572 2348 1.226686 CTATGGCGATGGCTGTGCTC 61.227 60.000 0.00 0.00 39.81 4.26
1573 2349 1.227764 CTATGGCGATGGCTGTGCT 60.228 57.895 0.00 0.00 39.81 4.40
1574 2350 0.604780 ATCTATGGCGATGGCTGTGC 60.605 55.000 0.00 0.00 39.81 4.57
1575 2351 2.749280 TATCTATGGCGATGGCTGTG 57.251 50.000 0.00 0.00 39.81 3.66
1614 2390 1.071019 CGGTCCTGTTGTCGTCGATG 61.071 60.000 0.00 0.00 0.00 3.84
1782 2558 0.772124 ATATGACGGGGCTGGGGATT 60.772 55.000 0.00 0.00 0.00 3.01
1850 2626 4.749976 ACGAGTAGAAAATGAGAAGAGCC 58.250 43.478 0.00 0.00 0.00 4.70
1922 2702 2.256306 TCATGGTAGCTGTCACCTTGA 58.744 47.619 15.36 15.36 43.90 3.02
1930 2710 5.852282 ACAAAACTTTTCATGGTAGCTGT 57.148 34.783 0.00 0.00 0.00 4.40
2034 2837 6.071560 CCCATGGAATCCAGATTTACATCATG 60.072 42.308 15.22 0.00 36.75 3.07
2279 3126 0.606096 TTGCCTCTTCCGTCGAATGA 59.394 50.000 0.00 0.00 0.00 2.57
2488 3346 6.258727 CAGTTCAGCAATACTATCAATCCGTT 59.741 38.462 0.00 0.00 0.00 4.44
2490 3348 5.755375 ACAGTTCAGCAATACTATCAATCCG 59.245 40.000 0.00 0.00 0.00 4.18
2692 3560 2.505407 TGTGTCATTGATGTCCTAGGGG 59.495 50.000 9.46 0.00 0.00 4.79
2693 3561 3.452264 TCTGTGTCATTGATGTCCTAGGG 59.548 47.826 9.46 0.00 0.00 3.53
2721 3604 2.732412 TGTCTCTACTTGCTGCAGTC 57.268 50.000 16.64 8.39 0.00 3.51
2783 3667 3.133003 GCTCACAGACACATACCCATACT 59.867 47.826 0.00 0.00 0.00 2.12
2784 3668 3.118775 TGCTCACAGACACATACCCATAC 60.119 47.826 0.00 0.00 0.00 2.39
2785 3669 3.103742 TGCTCACAGACACATACCCATA 58.896 45.455 0.00 0.00 0.00 2.74
2786 3670 1.908619 TGCTCACAGACACATACCCAT 59.091 47.619 0.00 0.00 0.00 4.00
2787 3671 1.347062 TGCTCACAGACACATACCCA 58.653 50.000 0.00 0.00 0.00 4.51
2800 3684 1.204941 AGTACCATCCGTTCTGCTCAC 59.795 52.381 0.00 0.00 0.00 3.51
2810 3704 4.402056 AACCATTCAGTAGTACCATCCG 57.598 45.455 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.