Multiple sequence alignment - TraesCS3A01G535100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G535100 chr3A 100.000 2938 0 0 1 2938 746635505 746632568 0.000000e+00 5426
1 TraesCS3A01G535100 chr3A 97.436 156 4 0 3 158 480399443 480399598 1.740000e-67 267
2 TraesCS3A01G535100 chr3A 93.333 180 10 1 2453 2632 92270733 92270556 6.240000e-67 265
3 TraesCS3A01G535100 chr3B 89.039 2363 115 56 163 2451 829543289 829540997 0.000000e+00 2796
4 TraesCS3A01G535100 chr3B 95.410 305 6 5 2638 2938 829541000 829540700 2.050000e-131 479
5 TraesCS3A01G535100 chr3D 91.947 1813 90 28 644 2451 611919674 611917913 0.000000e+00 2488
6 TraesCS3A01G535100 chr3D 96.346 301 7 3 2638 2938 611917916 611917620 2.630000e-135 492
7 TraesCS3A01G535100 chr3D 88.060 335 11 5 271 601 611919993 611919684 1.290000e-98 370
8 TraesCS3A01G535100 chr3D 94.944 178 6 2 2456 2633 475555209 475555035 2.880000e-70 276
9 TraesCS3A01G535100 chr2A 96.175 183 5 1 2452 2632 4904705 4904887 6.160000e-77 298
10 TraesCS3A01G535100 chr2A 96.319 163 6 0 1 163 715773348 715773510 4.830000e-68 268
11 TraesCS3A01G535100 chr2A 92.818 181 13 0 2453 2633 617759906 617759726 2.250000e-66 263
12 TraesCS3A01G535100 chr1A 93.583 187 10 2 2448 2633 585655997 585655812 8.020000e-71 278
13 TraesCS3A01G535100 chr1A 96.296 162 6 0 1 162 32881238 32881399 1.740000e-67 267
14 TraesCS3A01G535100 chr1A 96.835 158 5 0 1 158 455394458 455394301 6.240000e-67 265
15 TraesCS3A01G535100 chr7A 93.923 181 9 2 2453 2631 730830677 730830857 3.730000e-69 272
16 TraesCS3A01G535100 chr7A 93.333 180 11 1 2453 2632 652469893 652470071 6.240000e-67 265
17 TraesCS3A01G535100 chr7A 92.857 182 12 1 2453 2633 707996287 707996106 2.250000e-66 263
18 TraesCS3A01G535100 chr6A 95.294 170 6 2 1 170 386615824 386615991 4.830000e-68 268
19 TraesCS3A01G535100 chr6A 96.226 159 6 0 1 159 489613389 489613547 8.080000e-66 261
20 TraesCS3A01G535100 chr7B 93.333 180 12 0 2453 2632 587901480 587901301 1.740000e-67 267
21 TraesCS3A01G535100 chr4A 96.835 158 5 0 1 158 579102451 579102608 6.240000e-67 265
22 TraesCS3A01G535100 chr4A 96.795 156 5 0 3 158 589987793 589987948 8.080000e-66 261
23 TraesCS3A01G535100 chr4A 80.000 215 36 7 1319 1529 159294868 159294657 5.070000e-33 152
24 TraesCS3A01G535100 chr5A 94.152 171 9 1 1 171 244541406 244541575 2.900000e-65 259
25 TraesCS3A01G535100 chr1B 81.959 194 33 2 1342 1534 37799464 37799656 2.340000e-36 163
26 TraesCS3A01G535100 chr4D 79.070 215 39 6 1319 1529 315597307 315597519 3.050000e-30 143
27 TraesCS3A01G535100 chr1D 80.541 185 34 2 1351 1534 22437223 22437040 1.100000e-29 141
28 TraesCS3A01G535100 chr2D 79.487 195 38 2 1333 1526 48133243 48133436 1.420000e-28 137
29 TraesCS3A01G535100 chr2B 79.487 195 38 2 1333 1526 75847560 75847753 1.420000e-28 137
30 TraesCS3A01G535100 chr4B 79.104 201 38 4 1331 1529 393406268 393406466 5.110000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G535100 chr3A 746632568 746635505 2937 True 5426.000000 5426 100.000000 1 2938 1 chr3A.!!$R2 2937
1 TraesCS3A01G535100 chr3B 829540700 829543289 2589 True 1637.500000 2796 92.224500 163 2938 2 chr3B.!!$R1 2775
2 TraesCS3A01G535100 chr3D 611917620 611919993 2373 True 1116.666667 2488 92.117667 271 2938 3 chr3D.!!$R2 2667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.033504 CCCTTATCATGGGTCGACCG 59.966 60.0 27.68 14.74 44.64 4.79 F
1069 1128 0.034670 GGAGGAGGAAGCAGTTGCAT 60.035 55.0 6.90 0.00 45.16 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1413 0.108945 CCGTCCGGTTAAGACCTGTC 60.109 60.0 0.0 0.0 44.2 3.51 R
2618 2723 0.039180 TTCGCTGGGTCTGTCTAGGA 59.961 55.0 0.0 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.376450 CGATTTATCGCTTAAGGCTGTC 57.624 45.455 4.29 0.00 43.84 3.51
24 25 3.802139 CGATTTATCGCTTAAGGCTGTCA 59.198 43.478 4.29 0.00 43.84 3.58
25 26 4.084849 CGATTTATCGCTTAAGGCTGTCAG 60.085 45.833 4.29 0.00 43.84 3.51
26 27 4.465632 TTTATCGCTTAAGGCTGTCAGA 57.534 40.909 3.32 0.00 39.13 3.27
27 28 2.301577 ATCGCTTAAGGCTGTCAGAC 57.698 50.000 3.32 0.00 39.13 3.51
28 29 0.246635 TCGCTTAAGGCTGTCAGACC 59.753 55.000 0.70 3.61 39.13 3.85
29 30 1.078759 CGCTTAAGGCTGTCAGACCG 61.079 60.000 0.70 0.00 39.13 4.79
30 31 0.246635 GCTTAAGGCTGTCAGACCGA 59.753 55.000 0.70 0.00 38.06 4.69
31 32 1.134670 GCTTAAGGCTGTCAGACCGAT 60.135 52.381 0.70 1.73 38.06 4.18
32 33 2.100916 GCTTAAGGCTGTCAGACCGATA 59.899 50.000 0.70 0.85 38.06 2.92
33 34 3.430374 GCTTAAGGCTGTCAGACCGATAA 60.430 47.826 0.70 7.86 38.06 1.75
34 35 2.969628 AAGGCTGTCAGACCGATAAG 57.030 50.000 0.70 0.00 0.00 1.73
35 36 2.145397 AGGCTGTCAGACCGATAAGA 57.855 50.000 0.70 0.00 0.00 2.10
36 37 2.672098 AGGCTGTCAGACCGATAAGAT 58.328 47.619 0.70 0.00 0.00 2.40
37 38 3.833732 AGGCTGTCAGACCGATAAGATA 58.166 45.455 0.70 0.00 0.00 1.98
38 39 4.215908 AGGCTGTCAGACCGATAAGATAA 58.784 43.478 0.70 0.00 0.00 1.75
39 40 4.649674 AGGCTGTCAGACCGATAAGATAAA 59.350 41.667 0.70 0.00 0.00 1.40
40 41 5.305644 AGGCTGTCAGACCGATAAGATAAAT 59.694 40.000 0.70 0.00 0.00 1.40
41 42 5.635700 GGCTGTCAGACCGATAAGATAAATC 59.364 44.000 3.32 0.00 0.00 2.17
42 43 5.343593 GCTGTCAGACCGATAAGATAAATCG 59.656 44.000 3.32 0.00 44.51 3.34
51 52 6.880822 CGATAAGATAAATCGGCCGATAAA 57.119 37.500 39.08 29.07 41.91 1.40
52 53 7.464830 CGATAAGATAAATCGGCCGATAAAT 57.535 36.000 39.08 31.97 41.91 1.40
53 54 7.556433 CGATAAGATAAATCGGCCGATAAATC 58.444 38.462 39.08 36.08 41.91 2.17
54 55 7.222031 CGATAAGATAAATCGGCCGATAAATCA 59.778 37.037 37.99 28.35 41.91 2.57
55 56 6.727824 AAGATAAATCGGCCGATAAATCAG 57.272 37.500 37.99 12.25 33.97 2.90
56 57 4.631813 AGATAAATCGGCCGATAAATCAGC 59.368 41.667 37.99 26.71 33.97 4.26
57 58 1.523758 AATCGGCCGATAAATCAGCC 58.476 50.000 39.08 7.08 44.93 4.85
59 60 4.771127 GGCCGATAAATCAGCCGA 57.229 55.556 1.56 0.00 40.23 5.54
60 61 3.233355 GGCCGATAAATCAGCCGAT 57.767 52.632 1.56 0.00 40.23 4.18
61 62 2.380084 GGCCGATAAATCAGCCGATA 57.620 50.000 1.56 0.00 40.23 2.92
62 63 2.906354 GGCCGATAAATCAGCCGATAT 58.094 47.619 1.56 0.00 40.23 1.63
63 64 2.609459 GGCCGATAAATCAGCCGATATG 59.391 50.000 1.56 0.00 40.23 1.78
64 65 2.609459 GCCGATAAATCAGCCGATATGG 59.391 50.000 0.00 0.00 42.50 2.74
84 85 2.998668 CGATAAATCGGCCGATATGC 57.001 50.000 39.08 25.69 45.93 3.14
93 94 2.094762 GGCCGATATGCCGATAAACT 57.905 50.000 0.00 0.00 42.54 2.66
94 95 1.732259 GGCCGATATGCCGATAAACTG 59.268 52.381 0.00 0.00 42.54 3.16
95 96 1.732259 GCCGATATGCCGATAAACTGG 59.268 52.381 0.00 0.00 0.00 4.00
102 103 2.959507 GCCGATAAACTGGCCAATTT 57.040 45.000 17.44 17.44 45.73 1.82
104 105 3.702330 GCCGATAAACTGGCCAATTTAC 58.298 45.455 20.88 13.55 45.73 2.01
105 106 3.490249 GCCGATAAACTGGCCAATTTACC 60.490 47.826 20.88 11.30 45.73 2.85
106 107 3.067601 CCGATAAACTGGCCAATTTACCC 59.932 47.826 20.88 14.37 0.00 3.69
107 108 3.067601 CGATAAACTGGCCAATTTACCCC 59.932 47.826 20.88 12.16 0.00 4.95
108 109 2.713828 AAACTGGCCAATTTACCCCT 57.286 45.000 11.14 0.00 0.00 4.79
109 110 2.713828 AACTGGCCAATTTACCCCTT 57.286 45.000 7.01 0.00 0.00 3.95
110 111 3.837399 AACTGGCCAATTTACCCCTTA 57.163 42.857 7.01 0.00 0.00 2.69
111 112 4.346478 AACTGGCCAATTTACCCCTTAT 57.654 40.909 7.01 0.00 0.00 1.73
112 113 3.910989 ACTGGCCAATTTACCCCTTATC 58.089 45.455 7.01 0.00 0.00 1.75
113 114 3.270960 ACTGGCCAATTTACCCCTTATCA 59.729 43.478 7.01 0.00 0.00 2.15
114 115 4.078630 ACTGGCCAATTTACCCCTTATCAT 60.079 41.667 7.01 0.00 0.00 2.45
115 116 4.222336 TGGCCAATTTACCCCTTATCATG 58.778 43.478 0.61 0.00 0.00 3.07
116 117 3.578282 GGCCAATTTACCCCTTATCATGG 59.422 47.826 0.00 0.00 0.00 3.66
123 124 0.396811 CCCCTTATCATGGGTCGACC 59.603 60.000 27.04 27.04 43.09 4.79
124 125 0.033504 CCCTTATCATGGGTCGACCG 59.966 60.000 27.68 14.74 44.64 4.79
125 126 1.037493 CCTTATCATGGGTCGACCGA 58.963 55.000 27.68 25.05 44.64 4.69
126 127 1.618837 CCTTATCATGGGTCGACCGAT 59.381 52.381 27.68 26.19 44.64 4.18
127 128 2.823747 CCTTATCATGGGTCGACCGATA 59.176 50.000 28.81 24.09 44.64 2.92
128 129 3.257375 CCTTATCATGGGTCGACCGATAA 59.743 47.826 28.81 28.02 44.64 1.75
129 130 4.486090 CTTATCATGGGTCGACCGATAAG 58.514 47.826 32.99 32.99 44.64 1.73
130 131 1.771565 TCATGGGTCGACCGATAAGT 58.228 50.000 28.81 8.19 44.64 2.24
131 132 2.104967 TCATGGGTCGACCGATAAGTT 58.895 47.619 28.81 7.80 44.64 2.66
132 133 2.498481 TCATGGGTCGACCGATAAGTTT 59.502 45.455 28.81 7.04 44.64 2.66
133 134 2.660189 TGGGTCGACCGATAAGTTTC 57.340 50.000 27.68 11.32 44.64 2.78
134 135 1.205417 TGGGTCGACCGATAAGTTTCC 59.795 52.381 27.68 10.59 44.64 3.13
135 136 1.553308 GGTCGACCGATAAGTTTCCG 58.447 55.000 20.85 0.00 0.00 4.30
136 137 1.133025 GGTCGACCGATAAGTTTCCGA 59.867 52.381 20.85 0.00 0.00 4.55
137 138 2.223665 GGTCGACCGATAAGTTTCCGAT 60.224 50.000 20.85 0.00 0.00 4.18
138 139 3.003689 GGTCGACCGATAAGTTTCCGATA 59.996 47.826 20.85 0.00 0.00 2.92
139 140 4.498009 GGTCGACCGATAAGTTTCCGATAA 60.498 45.833 20.85 0.00 0.00 1.75
140 141 4.674211 GTCGACCGATAAGTTTCCGATAAG 59.326 45.833 3.51 0.00 0.00 1.73
141 142 3.424529 CGACCGATAAGTTTCCGATAAGC 59.575 47.826 0.00 0.00 0.00 3.09
142 143 3.378339 ACCGATAAGTTTCCGATAAGCG 58.622 45.455 0.00 0.00 40.47 4.68
143 144 3.067180 ACCGATAAGTTTCCGATAAGCGA 59.933 43.478 0.00 0.00 44.57 4.93
144 145 4.235360 CCGATAAGTTTCCGATAAGCGAT 58.765 43.478 0.00 0.00 44.57 4.58
145 146 5.048504 ACCGATAAGTTTCCGATAAGCGATA 60.049 40.000 0.00 0.00 44.57 2.92
146 147 6.034591 CCGATAAGTTTCCGATAAGCGATAT 58.965 40.000 0.00 0.00 44.57 1.63
147 148 6.196724 CCGATAAGTTTCCGATAAGCGATATC 59.803 42.308 0.00 0.00 44.57 1.63
148 149 6.196724 CGATAAGTTTCCGATAAGCGATATCC 59.803 42.308 0.00 0.00 44.57 2.59
149 150 4.189639 AGTTTCCGATAAGCGATATCCC 57.810 45.455 0.00 0.00 44.57 3.85
150 151 3.056035 AGTTTCCGATAAGCGATATCCCC 60.056 47.826 0.00 0.00 44.57 4.81
151 152 2.225382 TCCGATAAGCGATATCCCCA 57.775 50.000 0.00 0.00 44.57 4.96
152 153 2.531771 TCCGATAAGCGATATCCCCAA 58.468 47.619 0.00 0.00 44.57 4.12
153 154 2.232941 TCCGATAAGCGATATCCCCAAC 59.767 50.000 0.00 0.00 44.57 3.77
154 155 2.028476 CCGATAAGCGATATCCCCAACA 60.028 50.000 0.00 0.00 44.57 3.33
155 156 3.369471 CCGATAAGCGATATCCCCAACAT 60.369 47.826 0.00 0.00 44.57 2.71
156 157 4.253685 CGATAAGCGATATCCCCAACATT 58.746 43.478 0.00 0.00 44.57 2.71
157 158 4.093408 CGATAAGCGATATCCCCAACATTG 59.907 45.833 0.00 0.00 44.57 2.82
158 159 3.576078 AAGCGATATCCCCAACATTGA 57.424 42.857 0.00 0.00 0.00 2.57
159 160 3.795688 AGCGATATCCCCAACATTGAT 57.204 42.857 0.00 0.00 0.00 2.57
160 161 4.104383 AGCGATATCCCCAACATTGATT 57.896 40.909 0.00 0.00 0.00 2.57
161 162 4.074970 AGCGATATCCCCAACATTGATTC 58.925 43.478 0.00 0.00 0.00 2.52
166 167 7.627088 GCGATATCCCCAACATTGATTCTAATG 60.627 40.741 0.00 0.00 42.38 1.90
198 199 4.180057 ACGGATATACTATCGACCGAGAC 58.820 47.826 13.00 0.00 42.40 3.36
202 203 5.873712 GGATATACTATCGACCGAGACTTGA 59.126 44.000 0.00 0.00 0.00 3.02
211 212 4.216902 TCGACCGAGACTTGACAAAATCTA 59.783 41.667 2.38 0.00 0.00 1.98
259 262 3.739167 TTTTTCCGCTGGGACGTG 58.261 55.556 0.00 0.00 43.74 4.49
260 263 1.146485 TTTTTCCGCTGGGACGTGA 59.854 52.632 0.00 0.00 43.74 4.35
287 290 2.135664 ATTGATAGTGAGGTACGCGC 57.864 50.000 5.73 0.00 39.42 6.86
424 437 5.123227 ACTCACTCGATGTTTCTTGGAAAA 58.877 37.500 0.00 0.00 0.00 2.29
425 438 5.237344 ACTCACTCGATGTTTCTTGGAAAAG 59.763 40.000 0.00 0.00 0.00 2.27
426 439 5.364778 TCACTCGATGTTTCTTGGAAAAGA 58.635 37.500 0.00 0.00 0.00 2.52
427 440 5.466728 TCACTCGATGTTTCTTGGAAAAGAG 59.533 40.000 0.00 0.00 0.00 2.85
428 441 5.466728 CACTCGATGTTTCTTGGAAAAGAGA 59.533 40.000 15.53 6.13 0.00 3.10
429 442 5.698545 ACTCGATGTTTCTTGGAAAAGAGAG 59.301 40.000 15.53 13.27 0.00 3.20
430 443 5.853936 TCGATGTTTCTTGGAAAAGAGAGA 58.146 37.500 0.00 0.00 0.00 3.10
431 444 5.928839 TCGATGTTTCTTGGAAAAGAGAGAG 59.071 40.000 0.00 0.00 0.00 3.20
432 445 5.928839 CGATGTTTCTTGGAAAAGAGAGAGA 59.071 40.000 0.00 0.00 0.00 3.10
433 446 6.090628 CGATGTTTCTTGGAAAAGAGAGAGAG 59.909 42.308 0.00 0.00 0.00 3.20
434 447 6.485830 TGTTTCTTGGAAAAGAGAGAGAGA 57.514 37.500 0.00 0.00 0.00 3.10
435 448 6.520272 TGTTTCTTGGAAAAGAGAGAGAGAG 58.480 40.000 0.00 0.00 0.00 3.20
436 449 6.325028 TGTTTCTTGGAAAAGAGAGAGAGAGA 59.675 38.462 0.00 0.00 0.00 3.10
437 450 6.588719 TTCTTGGAAAAGAGAGAGAGAGAG 57.411 41.667 0.00 0.00 0.00 3.20
438 451 5.886609 TCTTGGAAAAGAGAGAGAGAGAGA 58.113 41.667 0.00 0.00 0.00 3.10
439 452 5.945784 TCTTGGAAAAGAGAGAGAGAGAGAG 59.054 44.000 0.00 0.00 0.00 3.20
440 453 5.512942 TGGAAAAGAGAGAGAGAGAGAGA 57.487 43.478 0.00 0.00 0.00 3.10
441 454 5.500234 TGGAAAAGAGAGAGAGAGAGAGAG 58.500 45.833 0.00 0.00 0.00 3.20
504 519 4.384846 ACGAAACGAATATATGATCGGTGC 59.615 41.667 14.10 7.25 38.17 5.01
567 584 4.023291 ACATATGCGACCCCTTGAAAAAT 58.977 39.130 1.58 0.00 0.00 1.82
601 618 0.179037 ATCCATCATCCACGGCACTG 60.179 55.000 0.00 0.00 0.00 3.66
615 632 3.626924 ACTGTCCGTCCTGGTGGC 61.627 66.667 0.00 0.00 39.52 5.01
630 647 1.597742 GTGGCTGGTGCGATTGATAT 58.402 50.000 0.00 0.00 40.82 1.63
632 649 2.480419 GTGGCTGGTGCGATTGATATAC 59.520 50.000 0.00 0.00 40.82 1.47
676 701 2.046892 CCTCCACTCCACTTGCCG 60.047 66.667 0.00 0.00 0.00 5.69
677 702 2.046892 CTCCACTCCACTTGCCGG 60.047 66.667 0.00 0.00 0.00 6.13
678 703 4.329545 TCCACTCCACTTGCCGGC 62.330 66.667 22.73 22.73 0.00 6.13
895 931 4.034048 CCATTTCCATACGTTTCTTCCTCG 59.966 45.833 0.00 0.00 0.00 4.63
910 946 0.605589 CCTCGAGTCAAGTGGCTCTT 59.394 55.000 12.31 0.00 44.21 2.85
925 961 2.019984 GCTCTTGATTGATCCCACCAC 58.980 52.381 0.00 0.00 0.00 4.16
957 993 1.337821 CAACGTCTTCTGTCCGTAGC 58.662 55.000 0.00 0.00 33.88 3.58
958 994 1.068472 CAACGTCTTCTGTCCGTAGCT 60.068 52.381 0.00 0.00 33.88 3.32
960 996 0.099082 CGTCTTCTGTCCGTAGCTCC 59.901 60.000 0.00 0.00 0.00 4.70
962 998 1.819903 GTCTTCTGTCCGTAGCTCCTT 59.180 52.381 0.00 0.00 0.00 3.36
964 1000 0.895530 TTCTGTCCGTAGCTCCTTGG 59.104 55.000 0.00 0.00 0.00 3.61
966 1002 0.108615 CTGTCCGTAGCTCCTTGGTG 60.109 60.000 0.00 0.00 0.00 4.17
970 1006 1.327690 CCGTAGCTCCTTGGTGCCTA 61.328 60.000 9.72 0.89 0.00 3.93
972 1008 0.179070 GTAGCTCCTTGGTGCCTAGC 60.179 60.000 9.72 0.22 0.00 3.42
973 1009 0.325671 TAGCTCCTTGGTGCCTAGCT 60.326 55.000 9.72 7.41 45.14 3.32
974 1010 1.451028 GCTCCTTGGTGCCTAGCTG 60.451 63.158 0.00 0.00 0.00 4.24
978 1014 1.002868 CTTGGTGCCTAGCTGCTGT 60.003 57.895 13.43 0.00 0.00 4.40
979 1015 1.302752 TTGGTGCCTAGCTGCTGTG 60.303 57.895 13.43 4.07 0.00 3.66
980 1016 2.055689 TTGGTGCCTAGCTGCTGTGT 62.056 55.000 13.43 0.00 0.00 3.72
981 1017 1.302832 GGTGCCTAGCTGCTGTGTT 60.303 57.895 13.43 0.00 0.00 3.32
982 1018 1.301677 GGTGCCTAGCTGCTGTGTTC 61.302 60.000 13.43 0.12 0.00 3.18
983 1019 0.603707 GTGCCTAGCTGCTGTGTTCA 60.604 55.000 13.43 0.30 0.00 3.18
984 1020 0.603707 TGCCTAGCTGCTGTGTTCAC 60.604 55.000 13.43 0.00 0.00 3.18
985 1021 0.603707 GCCTAGCTGCTGTGTTCACA 60.604 55.000 13.43 5.52 0.00 3.58
1069 1128 0.034670 GGAGGAGGAAGCAGTTGCAT 60.035 55.000 6.90 0.00 45.16 3.96
1074 1133 1.675641 GGAAGCAGTTGCATCGGGT 60.676 57.895 6.90 0.00 45.16 5.28
1083 1142 3.810896 GCATCGGGTGGTTTCCGC 61.811 66.667 0.00 0.00 46.43 5.54
1321 1406 2.684881 CACCTCTTGCTCTTGTGTTTGT 59.315 45.455 0.00 0.00 0.00 2.83
1328 1413 1.597937 GCTCTTGTGTTTGTCTTGGCG 60.598 52.381 0.00 0.00 0.00 5.69
1580 1668 2.999648 TCTGCTGCTTCGGCCTCT 61.000 61.111 0.00 0.00 40.91 3.69
1719 1816 0.107703 CAGCCAGGAACAAGCGGATA 60.108 55.000 0.00 0.00 33.74 2.59
1805 1902 3.161450 TCCTACGCATGGGGAGCC 61.161 66.667 16.50 0.00 0.00 4.70
1939 2036 2.969238 CGCCGGTGCCTCATGATC 60.969 66.667 0.00 0.00 0.00 2.92
1943 2041 1.755179 CCGGTGCCTCATGATCTTTT 58.245 50.000 0.00 0.00 0.00 2.27
1951 2049 6.261118 GTGCCTCATGATCTTTTTCATACAC 58.739 40.000 0.00 0.00 34.59 2.90
1952 2050 5.945191 TGCCTCATGATCTTTTTCATACACA 59.055 36.000 0.00 0.00 34.59 3.72
1963 2061 9.778993 ATCTTTTTCATACACAATCGATCTTTG 57.221 29.630 0.00 0.00 0.00 2.77
1969 2067 4.606457 ACACAATCGATCTTTGCTTAGC 57.394 40.909 0.00 0.00 0.00 3.09
2045 2143 2.360844 TCCTAGCTGAGACGAGACTTG 58.639 52.381 0.00 0.00 0.00 3.16
2054 2152 5.008217 GCTGAGACGAGACTTGATATGTACT 59.992 44.000 0.00 0.00 0.00 2.73
2055 2153 6.606234 TGAGACGAGACTTGATATGTACTC 57.394 41.667 0.00 0.00 0.00 2.59
2056 2154 6.350103 TGAGACGAGACTTGATATGTACTCT 58.650 40.000 0.00 0.00 0.00 3.24
2057 2155 6.480651 TGAGACGAGACTTGATATGTACTCTC 59.519 42.308 0.00 0.00 0.00 3.20
2058 2156 5.761234 AGACGAGACTTGATATGTACTCTCC 59.239 44.000 0.00 0.00 0.00 3.71
2061 2159 6.016693 ACGAGACTTGATATGTACTCTCCATG 60.017 42.308 0.00 0.00 0.00 3.66
2062 2160 6.016693 CGAGACTTGATATGTACTCTCCATGT 60.017 42.308 0.00 0.00 0.00 3.21
2222 2325 8.589335 TTTAGCAATGTATAACAGCTACTAGC 57.411 34.615 0.00 0.00 42.84 3.42
2266 2371 3.830178 TGAGAACTCGGATGGACTTTGTA 59.170 43.478 0.00 0.00 0.00 2.41
2267 2372 4.282449 TGAGAACTCGGATGGACTTTGTAA 59.718 41.667 0.00 0.00 0.00 2.41
2268 2373 5.221561 TGAGAACTCGGATGGACTTTGTAAA 60.222 40.000 0.00 0.00 0.00 2.01
2303 2408 6.773638 AGATTTGACCACCATGAGTATATCC 58.226 40.000 0.00 0.00 0.00 2.59
2328 2433 7.946776 CCCCTCAATCTATTTAATCTGGATGTT 59.053 37.037 0.00 0.00 0.00 2.71
2340 2445 8.755696 TTAATCTGGATGTTTTTGTGCAATAC 57.244 30.769 0.00 0.00 0.00 1.89
2341 2446 5.781210 TCTGGATGTTTTTGTGCAATACA 57.219 34.783 0.00 3.90 37.56 2.29
2353 2458 1.328986 TGCAATACACACACACACACG 59.671 47.619 0.00 0.00 0.00 4.49
2371 2476 7.066163 ACACACACGATATGTTCATTCATTCAT 59.934 33.333 0.00 0.00 40.64 2.57
2372 2477 7.585210 CACACACGATATGTTCATTCATTCATC 59.415 37.037 0.00 0.00 40.64 2.92
2431 2536 0.319083 TCGAAACTAAAGGCTGGCGA 59.681 50.000 0.00 0.00 0.00 5.54
2444 2549 2.348362 GGCTGGCGAAATTTGCATAAAC 59.652 45.455 7.59 0.00 0.00 2.01
2448 2553 3.246619 GGCGAAATTTGCATAAACGGAA 58.753 40.909 7.59 0.00 0.00 4.30
2449 2554 3.862845 GGCGAAATTTGCATAAACGGAAT 59.137 39.130 7.59 0.00 0.00 3.01
2450 2555 4.328712 GGCGAAATTTGCATAAACGGAATT 59.671 37.500 7.59 0.00 0.00 2.17
2451 2556 5.247340 GCGAAATTTGCATAAACGGAATTG 58.753 37.500 0.00 0.00 0.00 2.32
2452 2557 5.061560 GCGAAATTTGCATAAACGGAATTGA 59.938 36.000 0.00 0.00 0.00 2.57
2453 2558 6.685767 CGAAATTTGCATAAACGGAATTGAG 58.314 36.000 0.00 0.00 0.00 3.02
2454 2559 6.307800 CGAAATTTGCATAAACGGAATTGAGT 59.692 34.615 0.00 0.00 0.00 3.41
2455 2560 7.148820 CGAAATTTGCATAAACGGAATTGAGTT 60.149 33.333 0.00 0.00 0.00 3.01
2456 2561 7.961325 AATTTGCATAAACGGAATTGAGTTT 57.039 28.000 11.21 11.21 42.43 2.66
2457 2562 6.761731 TTTGCATAAACGGAATTGAGTTTG 57.238 33.333 14.59 4.79 40.34 2.93
2458 2563 5.446143 TGCATAAACGGAATTGAGTTTGT 57.554 34.783 14.59 7.94 40.34 2.83
2459 2564 5.457140 TGCATAAACGGAATTGAGTTTGTC 58.543 37.500 14.59 7.01 40.34 3.18
2460 2565 5.240623 TGCATAAACGGAATTGAGTTTGTCT 59.759 36.000 14.59 1.86 40.34 3.41
2461 2566 6.428465 TGCATAAACGGAATTGAGTTTGTCTA 59.572 34.615 14.59 0.35 40.34 2.59
2462 2567 7.041030 TGCATAAACGGAATTGAGTTTGTCTAA 60.041 33.333 14.59 0.07 40.34 2.10
2463 2568 7.968405 GCATAAACGGAATTGAGTTTGTCTAAT 59.032 33.333 14.59 1.92 40.34 1.73
2464 2569 9.840427 CATAAACGGAATTGAGTTTGTCTAATT 57.160 29.630 14.59 0.00 40.34 1.40
2466 2571 7.504924 AACGGAATTGAGTTTGTCTAATTCA 57.495 32.000 0.00 0.00 39.87 2.57
2467 2572 6.899114 ACGGAATTGAGTTTGTCTAATTCAC 58.101 36.000 0.00 0.00 39.87 3.18
2468 2573 6.485313 ACGGAATTGAGTTTGTCTAATTCACA 59.515 34.615 0.00 0.00 39.87 3.58
2469 2574 7.174946 ACGGAATTGAGTTTGTCTAATTCACAT 59.825 33.333 0.00 0.00 39.87 3.21
2470 2575 8.023128 CGGAATTGAGTTTGTCTAATTCACATT 58.977 33.333 0.00 0.00 39.87 2.71
2471 2576 9.696917 GGAATTGAGTTTGTCTAATTCACATTT 57.303 29.630 0.00 0.00 39.87 2.32
2504 2609 8.964476 TTTTAAGGATGTCACATCTAATCTCC 57.036 34.615 17.46 0.18 0.00 3.71
2505 2610 5.559148 AAGGATGTCACATCTAATCTCCC 57.441 43.478 17.46 0.00 0.00 4.30
2506 2611 4.560739 AGGATGTCACATCTAATCTCCCA 58.439 43.478 17.46 0.00 0.00 4.37
2507 2612 4.346418 AGGATGTCACATCTAATCTCCCAC 59.654 45.833 17.46 0.00 0.00 4.61
2508 2613 4.101585 GGATGTCACATCTAATCTCCCACA 59.898 45.833 17.46 0.00 0.00 4.17
2509 2614 5.396772 GGATGTCACATCTAATCTCCCACAA 60.397 44.000 17.46 0.00 0.00 3.33
2510 2615 5.497464 TGTCACATCTAATCTCCCACAAA 57.503 39.130 0.00 0.00 0.00 2.83
2511 2616 6.065976 TGTCACATCTAATCTCCCACAAAT 57.934 37.500 0.00 0.00 0.00 2.32
2512 2617 7.194112 TGTCACATCTAATCTCCCACAAATA 57.806 36.000 0.00 0.00 0.00 1.40
2513 2618 7.629157 TGTCACATCTAATCTCCCACAAATAA 58.371 34.615 0.00 0.00 0.00 1.40
2514 2619 7.552687 TGTCACATCTAATCTCCCACAAATAAC 59.447 37.037 0.00 0.00 0.00 1.89
2515 2620 6.761242 TCACATCTAATCTCCCACAAATAACG 59.239 38.462 0.00 0.00 0.00 3.18
2516 2621 6.538742 CACATCTAATCTCCCACAAATAACGT 59.461 38.462 0.00 0.00 0.00 3.99
2517 2622 7.709182 CACATCTAATCTCCCACAAATAACGTA 59.291 37.037 0.00 0.00 0.00 3.57
2518 2623 7.926555 ACATCTAATCTCCCACAAATAACGTAG 59.073 37.037 0.00 0.00 0.00 3.51
2519 2624 6.278363 TCTAATCTCCCACAAATAACGTAGC 58.722 40.000 0.00 0.00 0.00 3.58
2520 2625 3.965379 TCTCCCACAAATAACGTAGCA 57.035 42.857 0.00 0.00 0.00 3.49
2521 2626 4.274602 TCTCCCACAAATAACGTAGCAA 57.725 40.909 0.00 0.00 0.00 3.91
2522 2627 3.998341 TCTCCCACAAATAACGTAGCAAC 59.002 43.478 0.00 0.00 0.00 4.17
2523 2628 3.741249 TCCCACAAATAACGTAGCAACA 58.259 40.909 0.00 0.00 0.00 3.33
2524 2629 4.135306 TCCCACAAATAACGTAGCAACAA 58.865 39.130 0.00 0.00 0.00 2.83
2525 2630 4.214545 TCCCACAAATAACGTAGCAACAAG 59.785 41.667 0.00 0.00 0.00 3.16
2526 2631 4.472286 CCACAAATAACGTAGCAACAAGG 58.528 43.478 0.00 0.00 0.00 3.61
2527 2632 4.214545 CCACAAATAACGTAGCAACAAGGA 59.785 41.667 0.00 0.00 0.00 3.36
2528 2633 5.278071 CCACAAATAACGTAGCAACAAGGAA 60.278 40.000 0.00 0.00 0.00 3.36
2529 2634 5.623673 CACAAATAACGTAGCAACAAGGAAC 59.376 40.000 0.00 0.00 0.00 3.62
2530 2635 4.657075 AATAACGTAGCAACAAGGAACG 57.343 40.909 0.00 0.00 39.37 3.95
2531 2636 2.228138 AACGTAGCAACAAGGAACGA 57.772 45.000 0.00 0.00 37.04 3.85
2532 2637 2.228138 ACGTAGCAACAAGGAACGAA 57.772 45.000 0.00 0.00 37.04 3.85
2533 2638 2.553086 ACGTAGCAACAAGGAACGAAA 58.447 42.857 0.00 0.00 37.04 3.46
2534 2639 2.937799 ACGTAGCAACAAGGAACGAAAA 59.062 40.909 0.00 0.00 37.04 2.29
2535 2640 3.374678 ACGTAGCAACAAGGAACGAAAAA 59.625 39.130 0.00 0.00 37.04 1.94
2582 2687 4.952262 CACAAACATAGTGGACATCAGG 57.048 45.455 0.00 0.00 33.43 3.86
2583 2688 4.326826 CACAAACATAGTGGACATCAGGT 58.673 43.478 0.00 0.00 33.43 4.00
2584 2689 4.761739 CACAAACATAGTGGACATCAGGTT 59.238 41.667 0.00 0.00 33.43 3.50
2585 2690 5.937540 CACAAACATAGTGGACATCAGGTTA 59.062 40.000 0.00 0.00 33.43 2.85
2586 2691 6.092670 CACAAACATAGTGGACATCAGGTTAG 59.907 42.308 0.00 0.00 33.43 2.34
2587 2692 6.013725 ACAAACATAGTGGACATCAGGTTAGA 60.014 38.462 0.00 0.00 0.00 2.10
2588 2693 6.814954 AACATAGTGGACATCAGGTTAGAT 57.185 37.500 0.00 0.00 0.00 1.98
2602 2707 9.201127 CATCAGGTTAGATGTGACATAACTATG 57.799 37.037 10.13 9.49 40.35 2.23
2629 2734 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
2630 2735 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
2631 2736 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
2632 2737 2.043115 AGATGTGTCCTAGACAGACCCA 59.957 50.000 0.00 0.00 43.57 4.51
2633 2738 1.924731 TGTGTCCTAGACAGACCCAG 58.075 55.000 0.00 0.00 43.57 4.45
2634 2739 0.533032 GTGTCCTAGACAGACCCAGC 59.467 60.000 0.00 0.00 43.57 4.85
2635 2740 0.965866 TGTCCTAGACAGACCCAGCG 60.966 60.000 0.00 0.00 37.67 5.18
2636 2741 0.680280 GTCCTAGACAGACCCAGCGA 60.680 60.000 0.00 0.00 32.09 4.93
2637 2742 0.039180 TCCTAGACAGACCCAGCGAA 59.961 55.000 0.00 0.00 0.00 4.70
2701 2806 4.152402 CCGCATAAGAAATGTATTCCGAGG 59.848 45.833 0.00 0.00 0.00 4.63
2704 2809 5.758296 GCATAAGAAATGTATTCCGAGGTCA 59.242 40.000 0.00 0.00 0.00 4.02
2706 2811 7.630924 CATAAGAAATGTATTCCGAGGTCAAC 58.369 38.462 0.00 0.00 0.00 3.18
2792 2901 7.922699 ACTATACCTTTCTATTTCAGCCTCT 57.077 36.000 0.00 0.00 0.00 3.69
2802 2911 9.784531 TTTCTATTTCAGCCTCTAATTCCTATG 57.215 33.333 0.00 0.00 0.00 2.23
2805 2914 3.317406 TCAGCCTCTAATTCCTATGCCA 58.683 45.455 0.00 0.00 0.00 4.92
2885 2994 0.818296 CGTTCCTGTCCCTGTCCTAG 59.182 60.000 0.00 0.00 0.00 3.02
2886 2995 0.537653 GTTCCTGTCCCTGTCCTAGC 59.462 60.000 0.00 0.00 0.00 3.42
2888 2997 1.305886 TCCTGTCCCTGTCCTAGCTA 58.694 55.000 0.00 0.00 0.00 3.32
2890 2999 1.063567 CCTGTCCCTGTCCTAGCTACT 60.064 57.143 0.00 0.00 0.00 2.57
2891 3000 2.624557 CCTGTCCCTGTCCTAGCTACTT 60.625 54.545 0.00 0.00 0.00 2.24
2892 3001 3.100671 CTGTCCCTGTCCTAGCTACTTT 58.899 50.000 0.00 0.00 0.00 2.66
2893 3002 3.515901 CTGTCCCTGTCCTAGCTACTTTT 59.484 47.826 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.246635 TCGGTCTGACAGCCTTAAGC 59.753 55.000 10.38 0.00 44.25 3.09
12 13 2.969628 ATCGGTCTGACAGCCTTAAG 57.030 50.000 10.38 0.00 0.00 1.85
13 14 4.021229 TCTTATCGGTCTGACAGCCTTAA 58.979 43.478 10.38 4.43 0.00 1.85
14 15 3.628008 TCTTATCGGTCTGACAGCCTTA 58.372 45.455 10.38 0.00 0.00 2.69
15 16 2.457598 TCTTATCGGTCTGACAGCCTT 58.542 47.619 10.38 0.00 0.00 4.35
16 17 2.145397 TCTTATCGGTCTGACAGCCT 57.855 50.000 10.38 0.00 0.00 4.58
17 18 4.585955 TTATCTTATCGGTCTGACAGCC 57.414 45.455 10.38 1.72 0.00 4.85
18 19 5.343593 CGATTTATCTTATCGGTCTGACAGC 59.656 44.000 10.38 0.00 40.78 4.40
19 20 6.919687 CGATTTATCTTATCGGTCTGACAG 57.080 41.667 10.38 5.82 40.78 3.51
28 29 6.880822 TTTATCGGCCGATTTATCTTATCG 57.119 37.500 42.74 4.23 43.32 2.92
29 30 8.420374 TGATTTATCGGCCGATTTATCTTATC 57.580 34.615 42.74 28.98 36.17 1.75
30 31 8.425577 CTGATTTATCGGCCGATTTATCTTAT 57.574 34.615 42.74 24.06 36.17 1.73
31 32 7.827819 CTGATTTATCGGCCGATTTATCTTA 57.172 36.000 42.74 25.75 36.17 2.10
32 33 6.727824 CTGATTTATCGGCCGATTTATCTT 57.272 37.500 42.74 22.56 36.17 2.40
65 66 1.593006 GGCATATCGGCCGATTTATCG 59.407 52.381 42.74 26.30 45.40 2.92
75 76 1.732259 CCAGTTTATCGGCATATCGGC 59.268 52.381 0.00 0.00 0.00 5.54
84 85 3.067601 GGGTAAATTGGCCAGTTTATCGG 59.932 47.826 29.44 0.00 28.09 4.18
85 86 3.067601 GGGGTAAATTGGCCAGTTTATCG 59.932 47.826 29.44 0.00 28.09 2.92
86 87 4.286707 AGGGGTAAATTGGCCAGTTTATC 58.713 43.478 29.44 28.47 0.00 1.75
87 88 4.346478 AGGGGTAAATTGGCCAGTTTAT 57.654 40.909 29.44 15.39 0.00 1.40
88 89 3.837399 AGGGGTAAATTGGCCAGTTTA 57.163 42.857 24.95 24.95 0.00 2.01
89 90 2.713828 AGGGGTAAATTGGCCAGTTT 57.286 45.000 26.94 26.94 0.00 2.66
90 91 2.713828 AAGGGGTAAATTGGCCAGTT 57.286 45.000 7.84 7.84 0.00 3.16
91 92 3.270960 TGATAAGGGGTAAATTGGCCAGT 59.729 43.478 5.11 0.00 0.00 4.00
92 93 3.909732 TGATAAGGGGTAAATTGGCCAG 58.090 45.455 5.11 0.00 0.00 4.85
93 94 4.222336 CATGATAAGGGGTAAATTGGCCA 58.778 43.478 0.00 0.00 0.00 5.36
94 95 3.578282 CCATGATAAGGGGTAAATTGGCC 59.422 47.826 0.00 0.00 0.00 5.36
95 96 3.578282 CCCATGATAAGGGGTAAATTGGC 59.422 47.826 0.00 0.00 42.90 4.52
106 107 1.037493 TCGGTCGACCCATGATAAGG 58.963 55.000 28.52 11.29 0.00 2.69
107 108 4.486090 CTTATCGGTCGACCCATGATAAG 58.514 47.826 32.99 32.99 40.91 1.73
108 109 3.893200 ACTTATCGGTCGACCCATGATAA 59.107 43.478 27.51 27.51 32.37 1.75
109 110 3.493334 ACTTATCGGTCGACCCATGATA 58.507 45.455 28.52 23.76 0.00 2.15
110 111 2.317040 ACTTATCGGTCGACCCATGAT 58.683 47.619 28.52 24.74 0.00 2.45
111 112 1.771565 ACTTATCGGTCGACCCATGA 58.228 50.000 28.52 19.93 0.00 3.07
112 113 2.596904 AACTTATCGGTCGACCCATG 57.403 50.000 28.52 15.05 0.00 3.66
113 114 2.159000 GGAAACTTATCGGTCGACCCAT 60.159 50.000 28.52 23.64 0.00 4.00
114 115 1.205417 GGAAACTTATCGGTCGACCCA 59.795 52.381 28.52 17.72 0.00 4.51
115 116 1.800286 CGGAAACTTATCGGTCGACCC 60.800 57.143 28.52 10.89 0.00 4.46
116 117 1.133025 TCGGAAACTTATCGGTCGACC 59.867 52.381 25.28 25.28 0.00 4.79
117 118 2.549633 TCGGAAACTTATCGGTCGAC 57.450 50.000 7.13 7.13 0.00 4.20
118 119 4.790766 GCTTATCGGAAACTTATCGGTCGA 60.791 45.833 0.00 0.00 0.00 4.20
119 120 3.424529 GCTTATCGGAAACTTATCGGTCG 59.575 47.826 0.00 0.00 0.00 4.79
120 121 3.424529 CGCTTATCGGAAACTTATCGGTC 59.575 47.826 0.00 0.00 33.78 4.79
121 122 3.067180 TCGCTTATCGGAAACTTATCGGT 59.933 43.478 0.00 0.00 39.05 4.69
122 123 3.635331 TCGCTTATCGGAAACTTATCGG 58.365 45.455 0.00 0.00 39.05 4.18
123 124 6.196724 GGATATCGCTTATCGGAAACTTATCG 59.803 42.308 0.00 0.00 38.08 2.92
124 125 6.476053 GGGATATCGCTTATCGGAAACTTATC 59.524 42.308 12.31 0.00 38.08 1.75
125 126 6.338937 GGGATATCGCTTATCGGAAACTTAT 58.661 40.000 12.31 0.00 38.08 1.73
126 127 5.337009 GGGGATATCGCTTATCGGAAACTTA 60.337 44.000 18.21 0.00 38.08 2.24
127 128 4.562963 GGGGATATCGCTTATCGGAAACTT 60.563 45.833 18.21 0.00 38.08 2.66
128 129 3.056035 GGGGATATCGCTTATCGGAAACT 60.056 47.826 18.21 0.00 38.08 2.66
129 130 3.259902 GGGGATATCGCTTATCGGAAAC 58.740 50.000 18.21 0.00 38.08 2.78
130 131 2.901192 TGGGGATATCGCTTATCGGAAA 59.099 45.455 18.21 0.00 38.08 3.13
131 132 2.531771 TGGGGATATCGCTTATCGGAA 58.468 47.619 18.21 0.00 38.08 4.30
132 133 2.225382 TGGGGATATCGCTTATCGGA 57.775 50.000 18.21 0.00 38.08 4.55
133 134 2.028476 TGTTGGGGATATCGCTTATCGG 60.028 50.000 18.21 0.00 38.08 4.18
134 135 3.313012 TGTTGGGGATATCGCTTATCG 57.687 47.619 18.21 0.00 38.08 2.92
135 136 5.245531 TCAATGTTGGGGATATCGCTTATC 58.754 41.667 18.21 8.56 36.70 1.75
136 137 5.241403 TCAATGTTGGGGATATCGCTTAT 57.759 39.130 18.21 6.34 0.00 1.73
137 138 4.698201 TCAATGTTGGGGATATCGCTTA 57.302 40.909 18.21 6.48 0.00 3.09
138 139 3.576078 TCAATGTTGGGGATATCGCTT 57.424 42.857 18.21 2.96 0.00 4.68
139 140 3.795688 ATCAATGTTGGGGATATCGCT 57.204 42.857 18.21 0.00 0.00 4.93
140 141 4.074970 AGAATCAATGTTGGGGATATCGC 58.925 43.478 11.21 11.21 0.00 4.58
141 142 7.391554 ACATTAGAATCAATGTTGGGGATATCG 59.608 37.037 0.00 0.00 44.75 2.92
142 143 8.641498 ACATTAGAATCAATGTTGGGGATATC 57.359 34.615 0.00 0.00 44.75 1.63
144 145 9.573166 CTTACATTAGAATCAATGTTGGGGATA 57.427 33.333 13.32 0.00 44.75 2.59
145 146 8.281531 TCTTACATTAGAATCAATGTTGGGGAT 58.718 33.333 13.32 0.00 44.75 3.85
146 147 7.638444 TCTTACATTAGAATCAATGTTGGGGA 58.362 34.615 13.32 7.05 44.75 4.81
147 148 7.880160 TCTTACATTAGAATCAATGTTGGGG 57.120 36.000 13.32 5.58 44.75 4.96
148 149 9.347240 AGATCTTACATTAGAATCAATGTTGGG 57.653 33.333 13.32 7.18 44.75 4.12
178 179 5.873712 TCAAGTCTCGGTCGATAGTATATCC 59.126 44.000 0.00 0.00 37.40 2.59
185 186 3.759527 TTGTCAAGTCTCGGTCGATAG 57.240 47.619 0.00 0.00 0.00 2.08
198 199 6.423905 TCTTGGTCGACTTAGATTTTGTCAAG 59.576 38.462 16.46 14.47 0.00 3.02
202 203 5.855045 AGTCTTGGTCGACTTAGATTTTGT 58.145 37.500 16.46 0.90 41.27 2.83
246 249 2.678580 TGATCACGTCCCAGCGGA 60.679 61.111 0.00 0.00 35.98 5.54
247 250 2.509336 GTGATCACGTCCCAGCGG 60.509 66.667 10.69 0.00 35.98 5.52
258 261 7.255486 CGTACCTCACTATCAATAAGGTGATCA 60.255 40.741 2.68 0.00 40.49 2.92
259 262 7.085116 CGTACCTCACTATCAATAAGGTGATC 58.915 42.308 2.68 0.00 40.49 2.92
260 263 6.516860 GCGTACCTCACTATCAATAAGGTGAT 60.517 42.308 2.68 0.00 40.49 3.06
354 367 0.534877 TGCACACCATCACCACTGAC 60.535 55.000 0.00 0.00 0.00 3.51
424 437 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
425 438 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
426 439 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
427 440 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
428 441 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
429 442 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
430 443 6.409005 CCATTTCTCTCTCTCTCTCTCTCTCT 60.409 46.154 0.00 0.00 0.00 3.10
431 444 5.762218 CCATTTCTCTCTCTCTCTCTCTCTC 59.238 48.000 0.00 0.00 0.00 3.20
432 445 5.429762 TCCATTTCTCTCTCTCTCTCTCTCT 59.570 44.000 0.00 0.00 0.00 3.10
433 446 5.684704 TCCATTTCTCTCTCTCTCTCTCTC 58.315 45.833 0.00 0.00 0.00 3.20
434 447 5.398353 CCTCCATTTCTCTCTCTCTCTCTCT 60.398 48.000 0.00 0.00 0.00 3.10
435 448 4.823989 CCTCCATTTCTCTCTCTCTCTCTC 59.176 50.000 0.00 0.00 0.00 3.20
436 449 4.386761 CCCTCCATTTCTCTCTCTCTCTCT 60.387 50.000 0.00 0.00 0.00 3.10
437 450 3.891366 CCCTCCATTTCTCTCTCTCTCTC 59.109 52.174 0.00 0.00 0.00 3.20
438 451 3.914771 CCCTCCATTTCTCTCTCTCTCT 58.085 50.000 0.00 0.00 0.00 3.10
439 452 2.365293 GCCCTCCATTTCTCTCTCTCTC 59.635 54.545 0.00 0.00 0.00 3.20
440 453 2.397597 GCCCTCCATTTCTCTCTCTCT 58.602 52.381 0.00 0.00 0.00 3.10
441 454 1.416030 GGCCCTCCATTTCTCTCTCTC 59.584 57.143 0.00 0.00 0.00 3.20
504 519 4.083271 GCCTCTTTTTACCAAGTACAGCAG 60.083 45.833 0.00 0.00 0.00 4.24
601 618 4.394712 CCAGCCACCAGGACGGAC 62.395 72.222 0.00 0.00 38.63 4.79
615 632 6.013842 TCACTAGTATATCAATCGCACCAG 57.986 41.667 0.00 0.00 0.00 4.00
630 647 7.346751 TGTCAATGCACATCTATCACTAGTA 57.653 36.000 0.00 0.00 0.00 1.82
632 649 7.348808 GATGTCAATGCACATCTATCACTAG 57.651 40.000 14.28 0.00 46.37 2.57
679 704 3.269347 CGATAAGTTGCCGGCCCG 61.269 66.667 26.77 11.73 0.00 6.13
680 705 2.653953 TAGCGATAAGTTGCCGGCCC 62.654 60.000 26.77 15.12 35.16 5.80
689 719 4.993028 AGAGGAGGAAGATAGCGATAAGT 58.007 43.478 0.00 0.00 0.00 2.24
761 795 1.078214 CATCCATGGGCACACGTCT 60.078 57.895 13.02 0.00 0.00 4.18
801 835 1.006102 CTTATAGGCGGTCGGGCAG 60.006 63.158 6.73 0.00 45.36 4.85
802 836 1.456145 TCTTATAGGCGGTCGGGCA 60.456 57.895 6.73 0.00 45.36 5.36
803 837 1.006454 GTCTTATAGGCGGTCGGGC 60.006 63.158 0.00 0.00 42.69 6.13
805 839 4.937781 CGTCTTATAGGCGGTCGG 57.062 61.111 0.00 0.00 40.10 4.79
852 888 2.683362 GGAACGGAATGGAATGAAGGAC 59.317 50.000 0.00 0.00 0.00 3.85
910 946 0.034186 GCTGGTGGTGGGATCAATCA 60.034 55.000 0.00 0.00 0.00 2.57
942 978 1.465794 AGGAGCTACGGACAGAAGAC 58.534 55.000 0.00 0.00 0.00 3.01
957 993 1.451028 GCAGCTAGGCACCAAGGAG 60.451 63.158 0.00 0.00 0.00 3.69
958 994 1.920325 AGCAGCTAGGCACCAAGGA 60.920 57.895 0.00 0.00 35.83 3.36
960 996 1.002868 ACAGCAGCTAGGCACCAAG 60.003 57.895 0.00 0.00 35.83 3.61
962 998 2.055689 AACACAGCAGCTAGGCACCA 62.056 55.000 0.00 0.00 35.83 4.17
964 1000 0.603707 TGAACACAGCAGCTAGGCAC 60.604 55.000 0.00 0.00 35.83 5.01
966 1002 0.603707 TGTGAACACAGCAGCTAGGC 60.604 55.000 3.39 0.00 36.21 3.93
978 1014 3.195396 TCGATGGAGATGTGATGTGAACA 59.805 43.478 0.00 0.00 0.00 3.18
979 1015 3.785486 TCGATGGAGATGTGATGTGAAC 58.215 45.455 0.00 0.00 0.00 3.18
980 1016 4.099881 TCATCGATGGAGATGTGATGTGAA 59.900 41.667 24.61 0.00 45.96 3.18
981 1017 3.638160 TCATCGATGGAGATGTGATGTGA 59.362 43.478 24.61 0.00 45.96 3.58
982 1018 3.986277 TCATCGATGGAGATGTGATGTG 58.014 45.455 24.61 0.00 45.96 3.21
983 1019 4.343239 TCTTCATCGATGGAGATGTGATGT 59.657 41.667 29.01 0.00 45.96 3.06
984 1020 4.685165 GTCTTCATCGATGGAGATGTGATG 59.315 45.833 33.57 12.54 43.88 3.07
985 1021 4.558296 CGTCTTCATCGATGGAGATGTGAT 60.558 45.833 34.20 0.00 43.88 3.06
1074 1133 4.986708 GGCCCCTTGCGGAAACCA 62.987 66.667 0.00 0.00 42.61 3.67
1083 1142 3.704231 CTCCGTCCATGGCCCCTTG 62.704 68.421 6.96 0.00 0.00 3.61
1321 1406 1.001633 GGTTAAGACCTGTCGCCAAGA 59.998 52.381 0.00 0.00 42.99 3.02
1328 1413 0.108945 CCGTCCGGTTAAGACCTGTC 60.109 60.000 0.00 0.00 44.20 3.51
1337 1422 2.353610 GCTCTTCCCCGTCCGGTTA 61.354 63.158 0.00 0.00 0.00 2.85
1469 1554 4.802051 ATGGCCTTGGCGATGCGT 62.802 61.111 3.32 0.00 0.00 5.24
1590 1678 4.429212 CGCCGACATGGACGTGGA 62.429 66.667 0.00 0.00 42.00 4.02
1719 1816 1.293498 CGGTGTAGAGCAGCTGGTT 59.707 57.895 21.18 12.26 42.99 3.67
1817 1914 2.996168 AAGGCGGCGGCACTATCATC 62.996 60.000 34.87 0.15 42.47 2.92
1939 2036 7.752239 AGCAAAGATCGATTGTGTATGAAAAAG 59.248 33.333 0.00 0.00 0.00 2.27
1943 2041 6.741992 AAGCAAAGATCGATTGTGTATGAA 57.258 33.333 0.00 0.00 0.00 2.57
1951 2049 4.621068 TTGGCTAAGCAAAGATCGATTG 57.379 40.909 0.00 9.22 0.00 2.67
1952 2050 5.841957 AATTGGCTAAGCAAAGATCGATT 57.158 34.783 0.00 0.00 0.00 3.34
1963 2061 2.550180 GGCAGCTAGTAATTGGCTAAGC 59.450 50.000 0.00 0.00 42.38 3.09
1969 2067 3.561725 GCTAGTTGGCAGCTAGTAATTGG 59.438 47.826 30.68 12.18 38.46 3.16
2045 2143 7.089538 CACTGATCACATGGAGAGTACATATC 58.910 42.308 0.00 0.00 0.00 1.63
2054 2152 2.914059 CATGCACTGATCACATGGAGA 58.086 47.619 14.17 0.00 37.99 3.71
2055 2153 1.333931 GCATGCACTGATCACATGGAG 59.666 52.381 20.35 2.11 41.17 3.86
2056 2154 1.385528 GCATGCACTGATCACATGGA 58.614 50.000 20.35 11.47 41.17 3.41
2057 2155 0.384309 GGCATGCACTGATCACATGG 59.616 55.000 21.36 3.08 41.17 3.66
2058 2156 1.065551 CAGGCATGCACTGATCACATG 59.934 52.381 23.86 16.59 43.21 3.21
2241 2346 2.530701 AGTCCATCCGAGTTCTCAAGT 58.469 47.619 0.79 0.00 0.00 3.16
2268 2373 9.492973 CATGGTGGTCAAATCTTTATTTCTTTT 57.507 29.630 0.00 0.00 32.87 2.27
2303 2408 8.930846 AACATCCAGATTAAATAGATTGAGGG 57.069 34.615 0.00 0.00 0.00 4.30
2334 2439 1.595328 TCGTGTGTGTGTGTGTATTGC 59.405 47.619 0.00 0.00 0.00 3.56
2340 2445 3.492756 TGAACATATCGTGTGTGTGTGTG 59.507 43.478 0.00 0.00 41.14 3.82
2341 2446 3.723260 TGAACATATCGTGTGTGTGTGT 58.277 40.909 0.00 0.00 41.14 3.72
2342 2447 4.926860 ATGAACATATCGTGTGTGTGTG 57.073 40.909 0.00 0.00 41.14 3.82
2343 2448 4.994217 TGAATGAACATATCGTGTGTGTGT 59.006 37.500 0.00 0.00 41.14 3.72
2344 2449 5.529014 TGAATGAACATATCGTGTGTGTG 57.471 39.130 0.00 0.00 41.14 3.82
2371 2476 2.905075 CCTACTTCGGCATCAACATGA 58.095 47.619 0.00 0.00 30.57 3.07
2431 2536 7.961325 AACTCAATTCCGTTTATGCAAATTT 57.039 28.000 0.00 0.00 0.00 1.82
2444 2549 6.898041 TGTGAATTAGACAAACTCAATTCCG 58.102 36.000 0.00 0.00 36.84 4.30
2478 2583 9.396022 GGAGATTAGATGTGACATCCTTAAAAA 57.604 33.333 21.05 7.53 0.00 1.94
2479 2584 7.993183 GGGAGATTAGATGTGACATCCTTAAAA 59.007 37.037 21.05 9.11 0.00 1.52
2480 2585 7.127186 TGGGAGATTAGATGTGACATCCTTAAA 59.873 37.037 21.05 11.34 0.00 1.52
2481 2586 6.615316 TGGGAGATTAGATGTGACATCCTTAA 59.385 38.462 21.05 14.34 0.00 1.85
2482 2587 6.042093 GTGGGAGATTAGATGTGACATCCTTA 59.958 42.308 21.05 6.22 0.00 2.69
2483 2588 4.971282 TGGGAGATTAGATGTGACATCCTT 59.029 41.667 21.05 7.22 0.00 3.36
2484 2589 4.346418 GTGGGAGATTAGATGTGACATCCT 59.654 45.833 21.05 11.37 0.00 3.24
2485 2590 4.101585 TGTGGGAGATTAGATGTGACATCC 59.898 45.833 21.05 6.28 0.00 3.51
2486 2591 5.282055 TGTGGGAGATTAGATGTGACATC 57.718 43.478 17.46 17.46 0.00 3.06
2487 2592 5.698741 TTGTGGGAGATTAGATGTGACAT 57.301 39.130 0.00 0.00 0.00 3.06
2488 2593 5.497464 TTTGTGGGAGATTAGATGTGACA 57.503 39.130 0.00 0.00 0.00 3.58
2489 2594 7.254455 CGTTATTTGTGGGAGATTAGATGTGAC 60.254 40.741 0.00 0.00 0.00 3.67
2490 2595 6.761242 CGTTATTTGTGGGAGATTAGATGTGA 59.239 38.462 0.00 0.00 0.00 3.58
2491 2596 6.538742 ACGTTATTTGTGGGAGATTAGATGTG 59.461 38.462 0.00 0.00 0.00 3.21
2492 2597 6.650120 ACGTTATTTGTGGGAGATTAGATGT 58.350 36.000 0.00 0.00 0.00 3.06
2493 2598 7.095607 GCTACGTTATTTGTGGGAGATTAGATG 60.096 40.741 0.00 0.00 0.00 2.90
2494 2599 6.929606 GCTACGTTATTTGTGGGAGATTAGAT 59.070 38.462 0.00 0.00 0.00 1.98
2495 2600 6.127281 TGCTACGTTATTTGTGGGAGATTAGA 60.127 38.462 0.00 0.00 0.00 2.10
2496 2601 6.046593 TGCTACGTTATTTGTGGGAGATTAG 58.953 40.000 0.00 0.00 0.00 1.73
2497 2602 5.979993 TGCTACGTTATTTGTGGGAGATTA 58.020 37.500 0.00 0.00 0.00 1.75
2498 2603 4.839121 TGCTACGTTATTTGTGGGAGATT 58.161 39.130 0.00 0.00 0.00 2.40
2499 2604 4.481368 TGCTACGTTATTTGTGGGAGAT 57.519 40.909 0.00 0.00 0.00 2.75
2500 2605 3.965379 TGCTACGTTATTTGTGGGAGA 57.035 42.857 0.00 0.00 0.00 3.71
2501 2606 3.749088 TGTTGCTACGTTATTTGTGGGAG 59.251 43.478 0.00 0.00 0.00 4.30
2502 2607 3.741249 TGTTGCTACGTTATTTGTGGGA 58.259 40.909 0.00 0.00 0.00 4.37
2503 2608 4.472286 CTTGTTGCTACGTTATTTGTGGG 58.528 43.478 0.00 0.00 0.00 4.61
2504 2609 4.214545 TCCTTGTTGCTACGTTATTTGTGG 59.785 41.667 0.00 0.00 0.00 4.17
2505 2610 5.351233 TCCTTGTTGCTACGTTATTTGTG 57.649 39.130 0.00 0.00 0.00 3.33
2506 2611 5.559417 CGTTCCTTGTTGCTACGTTATTTGT 60.559 40.000 0.00 0.00 0.00 2.83
2507 2612 4.843984 CGTTCCTTGTTGCTACGTTATTTG 59.156 41.667 0.00 0.00 0.00 2.32
2508 2613 4.751098 TCGTTCCTTGTTGCTACGTTATTT 59.249 37.500 0.00 0.00 34.15 1.40
2509 2614 4.309099 TCGTTCCTTGTTGCTACGTTATT 58.691 39.130 0.00 0.00 34.15 1.40
2510 2615 3.916761 TCGTTCCTTGTTGCTACGTTAT 58.083 40.909 0.00 0.00 34.15 1.89
2511 2616 3.367992 TCGTTCCTTGTTGCTACGTTA 57.632 42.857 0.00 0.00 34.15 3.18
2512 2617 2.228138 TCGTTCCTTGTTGCTACGTT 57.772 45.000 0.00 0.00 34.15 3.99
2513 2618 2.228138 TTCGTTCCTTGTTGCTACGT 57.772 45.000 0.00 0.00 34.15 3.57
2514 2619 3.595709 TTTTCGTTCCTTGTTGCTACG 57.404 42.857 0.00 0.00 0.00 3.51
2561 2666 4.326826 ACCTGATGTCCACTATGTTTGTG 58.673 43.478 0.00 0.00 35.39 3.33
2562 2667 4.640771 ACCTGATGTCCACTATGTTTGT 57.359 40.909 0.00 0.00 0.00 2.83
2563 2668 6.406370 TCTAACCTGATGTCCACTATGTTTG 58.594 40.000 0.00 0.00 0.00 2.93
2564 2669 6.620877 TCTAACCTGATGTCCACTATGTTT 57.379 37.500 0.00 0.00 0.00 2.83
2565 2670 6.586344 CATCTAACCTGATGTCCACTATGTT 58.414 40.000 0.00 0.00 39.05 2.71
2566 2671 6.166984 CATCTAACCTGATGTCCACTATGT 57.833 41.667 0.00 0.00 39.05 2.29
2576 2681 9.201127 CATAGTTATGTCACATCTAACCTGATG 57.799 37.037 0.00 0.00 46.61 3.07
2577 2682 8.928448 ACATAGTTATGTCACATCTAACCTGAT 58.072 33.333 0.00 0.00 42.96 2.90
2578 2683 8.306313 ACATAGTTATGTCACATCTAACCTGA 57.694 34.615 0.00 0.00 42.96 3.86
2606 2711 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
2607 2712 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
2608 2713 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
2609 2714 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
2610 2715 3.268595 TGGGTCTGTCTAGGACACATCTA 59.731 47.826 0.00 0.00 41.46 1.98
2611 2716 2.043115 TGGGTCTGTCTAGGACACATCT 59.957 50.000 0.00 0.00 41.46 2.90
2612 2717 2.428890 CTGGGTCTGTCTAGGACACATC 59.571 54.545 3.42 0.00 44.62 3.06
2613 2718 2.461695 CTGGGTCTGTCTAGGACACAT 58.538 52.381 3.42 0.00 44.62 3.21
2614 2719 1.924731 CTGGGTCTGTCTAGGACACA 58.075 55.000 3.04 3.04 43.69 3.72
2615 2720 0.533032 GCTGGGTCTGTCTAGGACAC 59.467 60.000 0.00 0.00 37.67 3.67
2616 2721 0.965866 CGCTGGGTCTGTCTAGGACA 60.966 60.000 0.43 0.43 40.50 4.02
2617 2722 0.680280 TCGCTGGGTCTGTCTAGGAC 60.680 60.000 0.00 0.00 0.00 3.85
2618 2723 0.039180 TTCGCTGGGTCTGTCTAGGA 59.961 55.000 0.00 0.00 0.00 2.94
2619 2724 0.895530 TTTCGCTGGGTCTGTCTAGG 59.104 55.000 0.00 0.00 0.00 3.02
2620 2725 2.969628 ATTTCGCTGGGTCTGTCTAG 57.030 50.000 0.00 0.00 0.00 2.43
2621 2726 3.430374 GCTAATTTCGCTGGGTCTGTCTA 60.430 47.826 0.00 0.00 0.00 2.59
2622 2727 2.678190 GCTAATTTCGCTGGGTCTGTCT 60.678 50.000 0.00 0.00 0.00 3.41
2623 2728 1.666189 GCTAATTTCGCTGGGTCTGTC 59.334 52.381 0.00 0.00 0.00 3.51
2624 2729 1.003118 TGCTAATTTCGCTGGGTCTGT 59.997 47.619 0.00 0.00 0.00 3.41
2625 2730 1.737838 TGCTAATTTCGCTGGGTCTG 58.262 50.000 0.00 0.00 0.00 3.51
2626 2731 2.717639 ATGCTAATTTCGCTGGGTCT 57.282 45.000 0.00 0.00 0.00 3.85
2627 2732 4.083271 GGAATATGCTAATTTCGCTGGGTC 60.083 45.833 0.00 0.00 0.00 4.46
2628 2733 3.821033 GGAATATGCTAATTTCGCTGGGT 59.179 43.478 0.00 0.00 0.00 4.51
2629 2734 3.820467 TGGAATATGCTAATTTCGCTGGG 59.180 43.478 0.00 0.00 0.00 4.45
2630 2735 5.181811 TGATGGAATATGCTAATTTCGCTGG 59.818 40.000 0.00 0.00 0.00 4.85
2631 2736 6.245115 TGATGGAATATGCTAATTTCGCTG 57.755 37.500 0.00 0.00 0.00 5.18
2632 2737 6.488006 ACTTGATGGAATATGCTAATTTCGCT 59.512 34.615 0.00 0.00 0.00 4.93
2633 2738 6.672147 ACTTGATGGAATATGCTAATTTCGC 58.328 36.000 0.00 0.00 0.00 4.70
2634 2739 8.993121 AGTACTTGATGGAATATGCTAATTTCG 58.007 33.333 0.00 0.00 0.00 3.46
2637 2742 9.851686 TGAAGTACTTGATGGAATATGCTAATT 57.148 29.630 14.14 0.00 0.00 1.40
2701 2806 8.778358 GGTATCAGAATAGATTGATTGGTTGAC 58.222 37.037 0.00 0.00 35.72 3.18
2704 2809 7.815383 TGGGTATCAGAATAGATTGATTGGTT 58.185 34.615 0.00 0.00 35.72 3.67
2706 2811 7.918536 CTGGGTATCAGAATAGATTGATTGG 57.081 40.000 0.00 0.00 46.18 3.16
2802 2911 0.322008 CCTTGTGAACCTCTCCTGGC 60.322 60.000 0.00 0.00 0.00 4.85
2805 2914 0.768221 TGCCCTTGTGAACCTCTCCT 60.768 55.000 0.00 0.00 0.00 3.69
2885 2994 4.396166 TGCAAGATGGCTAGAAAAAGTAGC 59.604 41.667 0.00 0.00 41.96 3.58
2886 2995 6.541641 AGATGCAAGATGGCTAGAAAAAGTAG 59.458 38.462 0.00 0.00 34.04 2.57
2888 2997 5.259632 AGATGCAAGATGGCTAGAAAAAGT 58.740 37.500 0.00 0.00 34.04 2.66
2890 2999 6.653020 TCTAGATGCAAGATGGCTAGAAAAA 58.347 36.000 0.00 0.00 35.81 1.94
2891 3000 6.239217 TCTAGATGCAAGATGGCTAGAAAA 57.761 37.500 0.00 0.00 35.81 2.29
2892 3001 5.876651 TCTAGATGCAAGATGGCTAGAAA 57.123 39.130 0.00 0.00 35.81 2.52
2893 3002 5.600069 TCTTCTAGATGCAAGATGGCTAGAA 59.400 40.000 0.00 0.00 42.59 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.