Multiple sequence alignment - TraesCS3A01G534900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G534900 chr3A 100.000 3210 0 0 1 3210 746461326 746464535 0.000000e+00 5928.0
1 TraesCS3A01G534900 chr3A 86.486 148 17 2 2906 3050 609950986 609951133 3.310000e-35 159.0
2 TraesCS3A01G534900 chr3A 83.962 106 16 1 2502 2606 67578557 67578452 2.040000e-17 100.0
3 TraesCS3A01G534900 chr3D 91.718 2258 132 26 263 2487 611672700 611674935 0.000000e+00 3083.0
4 TraesCS3A01G534900 chr3B 91.333 2123 139 28 263 2361 829391025 829393126 0.000000e+00 2859.0
5 TraesCS3A01G534900 chr3B 78.036 387 80 4 1022 1407 64794100 64794482 4.140000e-59 239.0
6 TraesCS3A01G534900 chr3B 84.422 199 22 5 2447 2641 829393445 829393638 1.520000e-43 187.0
7 TraesCS3A01G534900 chr7B 92.384 709 51 1 1531 2239 454182546 454183251 0.000000e+00 1007.0
8 TraesCS3A01G534900 chr7B 86.371 587 53 10 855 1418 454181456 454182038 1.640000e-172 616.0
9 TraesCS3A01G534900 chr7B 85.211 142 19 1 2906 3045 244640635 244640494 9.280000e-31 145.0
10 TraesCS3A01G534900 chr7A 92.826 683 47 2 1531 2212 487480407 487481088 0.000000e+00 989.0
11 TraesCS3A01G534900 chr7A 91.727 411 33 1 1009 1418 487479246 487479656 1.290000e-158 569.0
12 TraesCS3A01G534900 chr7A 85.135 148 19 2 2906 3050 68090369 68090222 7.170000e-32 148.0
13 TraesCS3A01G534900 chr7A 85.915 142 17 2 2906 3044 696171944 696172085 7.170000e-32 148.0
14 TraesCS3A01G534900 chr7A 75.610 328 57 9 2448 2767 109068541 109068853 1.200000e-29 141.0
15 TraesCS3A01G534900 chr7A 94.872 39 2 0 461 499 357833831 357833869 9.620000e-06 62.1
16 TraesCS3A01G534900 chr7D 91.714 700 54 2 1531 2229 437203701 437204397 0.000000e+00 968.0
17 TraesCS3A01G534900 chr7D 86.325 585 54 9 855 1418 437202606 437203185 5.890000e-172 614.0
18 TraesCS3A01G534900 chr7D 81.407 199 32 4 2448 2641 104883703 104883505 1.190000e-34 158.0
19 TraesCS3A01G534900 chr7D 82.143 112 12 7 2654 2758 497580803 497580693 4.410000e-14 89.8
20 TraesCS3A01G534900 chr7D 83.784 74 10 1 2656 2727 529676520 529676593 5.750000e-08 69.4
21 TraesCS3A01G534900 chr6B 88.730 701 76 1 1535 2235 6629203 6628506 0.000000e+00 854.0
22 TraesCS3A01G534900 chr6B 80.213 657 83 29 764 1415 6630725 6630111 1.760000e-122 449.0
23 TraesCS3A01G534900 chr6B 81.313 198 33 3 2448 2641 686812221 686812418 1.190000e-34 158.0
24 TraesCS3A01G534900 chr6D 88.302 701 79 1 1535 2235 3345786 3345089 0.000000e+00 837.0
25 TraesCS3A01G534900 chr6D 79.970 674 88 26 750 1415 3347418 3346784 1.360000e-123 453.0
26 TraesCS3A01G534900 chr6D 82.468 462 53 11 1752 2212 3352523 3352089 2.340000e-101 379.0
27 TraesCS3A01G534900 chr6D 86.667 150 15 4 2902 3048 446086899 446086752 9.220000e-36 161.0
28 TraesCS3A01G534900 chr6D 82.781 151 22 3 2906 3054 202257579 202257727 7.230000e-27 132.0
29 TraesCS3A01G534900 chr6D 83.186 113 11 2 2654 2758 6312568 6312456 2.640000e-16 97.1
30 TraesCS3A01G534900 chr6A 87.037 702 86 3 1535 2235 2178697 2178000 0.000000e+00 787.0
31 TraesCS3A01G534900 chr6A 80.182 661 92 24 758 1415 2180896 2180272 2.920000e-125 459.0
32 TraesCS3A01G534900 chr2B 76.866 670 139 15 1548 2209 793906883 793906222 6.540000e-97 364.0
33 TraesCS3A01G534900 chr2B 85.106 141 19 1 2906 3044 316008170 316008030 3.340000e-30 143.0
34 TraesCS3A01G534900 chr5B 85.616 146 18 2 2906 3048 573003574 573003719 1.990000e-32 150.0
35 TraesCS3A01G534900 chr5B 80.882 204 25 10 2448 2644 546706937 546706741 7.170000e-32 148.0
36 TraesCS3A01G534900 chr4A 85.616 146 18 2 2906 3048 584667574 584667429 1.990000e-32 150.0
37 TraesCS3A01G534900 chr4A 80.303 198 31 7 2448 2638 504220140 504220336 3.340000e-30 143.0
38 TraesCS3A01G534900 chr2D 80.402 199 33 5 2448 2641 134414281 134414478 2.580000e-31 147.0
39 TraesCS3A01G534900 chr2D 78.894 199 34 7 2448 2641 49400541 49400346 9.350000e-26 128.0
40 TraesCS3A01G534900 chr2D 94.118 51 2 1 2654 2703 63687719 63687769 3.430000e-10 76.8
41 TraesCS3A01G534900 chr2A 79.899 199 32 7 2449 2641 142184484 142184680 4.320000e-29 139.0
42 TraesCS3A01G534900 chr1A 83.117 154 24 2 2489 2641 22072274 22072426 4.320000e-29 139.0
43 TraesCS3A01G534900 chr1A 74.615 260 35 17 2448 2703 47212672 47212904 5.710000e-13 86.1
44 TraesCS3A01G534900 chr1D 82.051 117 16 3 2 117 377917521 377917633 9.480000e-16 95.3
45 TraesCS3A01G534900 chr5D 98.000 50 1 0 2654 2703 6446630 6446581 1.590000e-13 87.9
46 TraesCS3A01G534900 chr4D 98.000 50 1 0 2654 2703 102386775 102386726 1.590000e-13 87.9
47 TraesCS3A01G534900 chr4D 96.970 33 0 1 578 610 387329373 387329342 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G534900 chr3A 746461326 746464535 3209 False 5928.0 5928 100.0000 1 3210 1 chr3A.!!$F2 3209
1 TraesCS3A01G534900 chr3D 611672700 611674935 2235 False 3083.0 3083 91.7180 263 2487 1 chr3D.!!$F1 2224
2 TraesCS3A01G534900 chr3B 829391025 829393638 2613 False 1523.0 2859 87.8775 263 2641 2 chr3B.!!$F2 2378
3 TraesCS3A01G534900 chr7B 454181456 454183251 1795 False 811.5 1007 89.3775 855 2239 2 chr7B.!!$F1 1384
4 TraesCS3A01G534900 chr7A 487479246 487481088 1842 False 779.0 989 92.2765 1009 2212 2 chr7A.!!$F4 1203
5 TraesCS3A01G534900 chr7D 437202606 437204397 1791 False 791.0 968 89.0195 855 2229 2 chr7D.!!$F2 1374
6 TraesCS3A01G534900 chr6B 6628506 6630725 2219 True 651.5 854 84.4715 764 2235 2 chr6B.!!$R1 1471
7 TraesCS3A01G534900 chr6D 3345089 3347418 2329 True 645.0 837 84.1360 750 2235 2 chr6D.!!$R4 1485
8 TraesCS3A01G534900 chr6A 2178000 2180896 2896 True 623.0 787 83.6095 758 2235 2 chr6A.!!$R1 1477
9 TraesCS3A01G534900 chr2B 793906222 793906883 661 True 364.0 364 76.8660 1548 2209 1 chr2B.!!$R2 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.034476 ATCGCGGTCTGCATCATCAT 59.966 50.0 6.13 0.0 46.97 2.45 F
441 450 0.101219 GCGTTTGGCCCATCTCATTC 59.899 55.0 0.00 0.0 34.80 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1345 0.949105 CGGTGAGGTACTTGCACACC 60.949 60.0 9.71 9.71 41.55 4.16 R
2213 4110 0.391263 GGGAGGACGTTGTCATGGAC 60.391 60.0 0.00 0.00 33.68 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.677228 GGCCAGCCCAGTATGTGT 59.323 61.111 0.00 0.00 0.00 3.72
24 25 1.452108 GGCCAGCCCAGTATGTGTC 60.452 63.158 0.00 0.00 0.00 3.67
25 26 1.815421 GCCAGCCCAGTATGTGTCG 60.815 63.158 0.00 0.00 0.00 4.35
26 27 1.897423 CCAGCCCAGTATGTGTCGA 59.103 57.895 0.00 0.00 0.00 4.20
27 28 0.179100 CCAGCCCAGTATGTGTCGAG 60.179 60.000 0.00 0.00 0.00 4.04
28 29 0.807667 CAGCCCAGTATGTGTCGAGC 60.808 60.000 0.00 0.00 0.00 5.03
29 30 1.521681 GCCCAGTATGTGTCGAGCC 60.522 63.158 0.00 0.00 0.00 4.70
30 31 1.961180 GCCCAGTATGTGTCGAGCCT 61.961 60.000 0.00 0.00 0.00 4.58
31 32 0.179100 CCCAGTATGTGTCGAGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
32 33 0.532573 CCAGTATGTGTCGAGCCTGT 59.467 55.000 0.00 0.00 0.00 4.00
33 34 1.633561 CAGTATGTGTCGAGCCTGTG 58.366 55.000 0.00 0.00 0.00 3.66
34 35 0.108615 AGTATGTGTCGAGCCTGTGC 60.109 55.000 0.00 0.00 37.95 4.57
35 36 0.389817 GTATGTGTCGAGCCTGTGCA 60.390 55.000 0.00 0.00 41.13 4.57
36 37 0.536724 TATGTGTCGAGCCTGTGCAT 59.463 50.000 0.00 0.00 41.13 3.96
37 38 0.742281 ATGTGTCGAGCCTGTGCATC 60.742 55.000 0.00 0.00 41.13 3.91
38 39 2.125952 TGTCGAGCCTGTGCATCG 60.126 61.111 0.20 0.20 41.13 3.84
39 40 3.558411 GTCGAGCCTGTGCATCGC 61.558 66.667 1.80 0.00 41.13 4.58
45 46 3.190849 CCTGTGCATCGCGGTCTG 61.191 66.667 6.13 2.79 0.00 3.51
46 47 3.857854 CTGTGCATCGCGGTCTGC 61.858 66.667 18.17 18.17 41.47 4.26
47 48 4.678499 TGTGCATCGCGGTCTGCA 62.678 61.111 22.00 22.00 46.97 4.41
49 50 2.891936 TGCATCGCGGTCTGCATC 60.892 61.111 22.00 2.02 46.97 3.91
50 51 2.891936 GCATCGCGGTCTGCATCA 60.892 61.111 19.48 0.00 46.97 3.07
51 52 2.249535 GCATCGCGGTCTGCATCAT 61.250 57.895 19.48 0.00 46.97 2.45
52 53 1.858041 CATCGCGGTCTGCATCATC 59.142 57.895 6.13 0.00 46.97 2.92
53 54 0.877213 CATCGCGGTCTGCATCATCA 60.877 55.000 6.13 0.00 46.97 3.07
54 55 0.034476 ATCGCGGTCTGCATCATCAT 59.966 50.000 6.13 0.00 46.97 2.45
55 56 0.673437 TCGCGGTCTGCATCATCATA 59.327 50.000 6.13 0.00 46.97 2.15
56 57 1.273327 TCGCGGTCTGCATCATCATAT 59.727 47.619 6.13 0.00 46.97 1.78
57 58 2.491693 TCGCGGTCTGCATCATCATATA 59.508 45.455 6.13 0.00 46.97 0.86
58 59 2.856557 CGCGGTCTGCATCATCATATAG 59.143 50.000 4.16 0.00 46.97 1.31
59 60 3.193263 GCGGTCTGCATCATCATATAGG 58.807 50.000 0.00 0.00 45.45 2.57
60 61 3.118992 GCGGTCTGCATCATCATATAGGA 60.119 47.826 0.00 0.00 45.45 2.94
61 62 4.680702 CGGTCTGCATCATCATATAGGAG 58.319 47.826 0.00 0.00 0.00 3.69
62 63 4.441217 CGGTCTGCATCATCATATAGGAGG 60.441 50.000 0.00 0.00 0.00 4.30
63 64 4.469227 GGTCTGCATCATCATATAGGAGGT 59.531 45.833 0.00 0.00 0.00 3.85
64 65 5.395103 GGTCTGCATCATCATATAGGAGGTC 60.395 48.000 0.00 0.00 0.00 3.85
65 66 4.713814 TCTGCATCATCATATAGGAGGTCC 59.286 45.833 0.00 0.00 0.00 4.46
66 67 3.776969 TGCATCATCATATAGGAGGTCCC 59.223 47.826 0.00 0.00 36.42 4.46
74 75 3.516780 AGGAGGTCCCTGTACGGA 58.483 61.111 2.31 0.00 45.61 4.69
80 81 3.892200 GTCCCTGTACGGACGAAAA 57.108 52.632 2.31 0.00 42.88 2.29
81 82 2.153366 GTCCCTGTACGGACGAAAAA 57.847 50.000 2.31 0.00 42.88 1.94
103 104 6.564709 AAACCGGAGAAACAAATTAGTACC 57.435 37.500 9.46 0.00 0.00 3.34
104 105 5.231702 ACCGGAGAAACAAATTAGTACCA 57.768 39.130 9.46 0.00 0.00 3.25
105 106 4.999311 ACCGGAGAAACAAATTAGTACCAC 59.001 41.667 9.46 0.00 0.00 4.16
106 107 4.393990 CCGGAGAAACAAATTAGTACCACC 59.606 45.833 0.00 0.00 0.00 4.61
107 108 5.243207 CGGAGAAACAAATTAGTACCACCT 58.757 41.667 0.00 0.00 0.00 4.00
108 109 5.704053 CGGAGAAACAAATTAGTACCACCTT 59.296 40.000 0.00 0.00 0.00 3.50
109 110 6.348213 CGGAGAAACAAATTAGTACCACCTTG 60.348 42.308 0.00 0.00 0.00 3.61
110 111 6.072119 GGAGAAACAAATTAGTACCACCTTGG 60.072 42.308 0.00 0.00 45.02 3.61
111 112 6.607019 AGAAACAAATTAGTACCACCTTGGA 58.393 36.000 0.00 0.00 40.96 3.53
112 113 7.238710 AGAAACAAATTAGTACCACCTTGGAT 58.761 34.615 0.00 0.00 40.96 3.41
113 114 8.387813 AGAAACAAATTAGTACCACCTTGGATA 58.612 33.333 0.00 0.00 40.96 2.59
114 115 8.575649 AAACAAATTAGTACCACCTTGGATAG 57.424 34.615 0.00 0.00 40.96 2.08
115 116 7.504926 ACAAATTAGTACCACCTTGGATAGA 57.495 36.000 0.00 0.00 40.96 1.98
116 117 7.924541 ACAAATTAGTACCACCTTGGATAGAA 58.075 34.615 0.00 0.00 40.96 2.10
117 118 8.557450 ACAAATTAGTACCACCTTGGATAGAAT 58.443 33.333 0.00 0.00 40.96 2.40
118 119 9.408648 CAAATTAGTACCACCTTGGATAGAATT 57.591 33.333 0.00 0.00 40.96 2.17
119 120 9.990868 AAATTAGTACCACCTTGGATAGAATTT 57.009 29.630 0.00 3.73 40.96 1.82
120 121 9.990868 AATTAGTACCACCTTGGATAGAATTTT 57.009 29.630 0.00 0.00 40.96 1.82
121 122 8.801882 TTAGTACCACCTTGGATAGAATTTTG 57.198 34.615 0.00 0.00 40.96 2.44
122 123 6.790319 AGTACCACCTTGGATAGAATTTTGT 58.210 36.000 0.00 0.00 40.96 2.83
123 124 7.238710 AGTACCACCTTGGATAGAATTTTGTT 58.761 34.615 0.00 0.00 40.96 2.83
124 125 8.387813 AGTACCACCTTGGATAGAATTTTGTTA 58.612 33.333 0.00 0.00 40.96 2.41
125 126 9.016438 GTACCACCTTGGATAGAATTTTGTTAA 57.984 33.333 0.00 0.00 40.96 2.01
126 127 8.485578 ACCACCTTGGATAGAATTTTGTTAAA 57.514 30.769 0.00 0.00 40.96 1.52
127 128 8.929487 ACCACCTTGGATAGAATTTTGTTAAAA 58.071 29.630 0.00 0.00 40.96 1.52
128 129 9.771534 CCACCTTGGATAGAATTTTGTTAAAAA 57.228 29.630 0.00 0.00 40.96 1.94
174 175 4.425577 AAAATCAGAGAAACGCATGTCC 57.574 40.909 0.00 0.00 0.00 4.02
175 176 2.029838 ATCAGAGAAACGCATGTCCC 57.970 50.000 0.00 0.00 0.00 4.46
176 177 0.976641 TCAGAGAAACGCATGTCCCT 59.023 50.000 0.00 0.00 0.00 4.20
177 178 1.347707 TCAGAGAAACGCATGTCCCTT 59.652 47.619 0.00 0.00 0.00 3.95
178 179 2.154462 CAGAGAAACGCATGTCCCTTT 58.846 47.619 0.00 0.00 0.00 3.11
179 180 3.007506 TCAGAGAAACGCATGTCCCTTTA 59.992 43.478 0.00 0.00 0.00 1.85
180 181 3.751175 CAGAGAAACGCATGTCCCTTTAA 59.249 43.478 0.00 0.00 0.00 1.52
181 182 4.396166 CAGAGAAACGCATGTCCCTTTAAT 59.604 41.667 0.00 0.00 0.00 1.40
182 183 5.010282 AGAGAAACGCATGTCCCTTTAATT 58.990 37.500 0.00 0.00 0.00 1.40
183 184 6.093495 CAGAGAAACGCATGTCCCTTTAATTA 59.907 38.462 0.00 0.00 0.00 1.40
184 185 6.828785 AGAGAAACGCATGTCCCTTTAATTAT 59.171 34.615 0.00 0.00 0.00 1.28
185 186 7.339466 AGAGAAACGCATGTCCCTTTAATTATT 59.661 33.333 0.00 0.00 0.00 1.40
186 187 7.836842 AGAAACGCATGTCCCTTTAATTATTT 58.163 30.769 0.00 0.00 0.00 1.40
187 188 8.962679 AGAAACGCATGTCCCTTTAATTATTTA 58.037 29.630 0.00 0.00 0.00 1.40
188 189 9.744468 GAAACGCATGTCCCTTTAATTATTTAT 57.256 29.630 0.00 0.00 0.00 1.40
222 223 9.548631 AGGTAGGTATAAATATAGATGTGCACT 57.451 33.333 19.41 3.19 0.00 4.40
246 247 9.978044 ACTATATATGATAGATACGTAGTCGCA 57.022 33.333 0.08 0.00 43.93 5.10
249 250 5.684550 ATGATAGATACGTAGTCGCAACA 57.315 39.130 0.08 0.00 43.93 3.33
250 251 5.684550 TGATAGATACGTAGTCGCAACAT 57.315 39.130 0.08 0.00 43.93 2.71
251 252 6.790285 TGATAGATACGTAGTCGCAACATA 57.210 37.500 0.08 0.00 43.93 2.29
252 253 7.193377 TGATAGATACGTAGTCGCAACATAA 57.807 36.000 0.08 0.00 43.93 1.90
253 254 7.295930 TGATAGATACGTAGTCGCAACATAAG 58.704 38.462 0.08 0.00 43.93 1.73
254 255 5.496133 AGATACGTAGTCGCAACATAAGT 57.504 39.130 0.08 0.00 43.93 2.24
255 256 5.508872 AGATACGTAGTCGCAACATAAGTC 58.491 41.667 0.08 0.00 43.93 3.01
256 257 3.844577 ACGTAGTCGCAACATAAGTCT 57.155 42.857 0.00 0.00 29.74 3.24
257 258 3.499048 ACGTAGTCGCAACATAAGTCTG 58.501 45.455 0.00 0.00 29.74 3.51
258 259 3.057736 ACGTAGTCGCAACATAAGTCTGT 60.058 43.478 0.00 0.00 29.74 3.41
259 260 3.300853 CGTAGTCGCAACATAAGTCTGTG 59.699 47.826 0.00 0.00 0.00 3.66
260 261 2.688507 AGTCGCAACATAAGTCTGTGG 58.311 47.619 0.00 0.00 0.00 4.17
261 262 2.299013 AGTCGCAACATAAGTCTGTGGA 59.701 45.455 0.00 0.00 0.00 4.02
331 332 2.094078 CGGTCCCGGGCGATATTTATTA 60.094 50.000 18.49 0.00 35.56 0.98
335 336 4.331717 GTCCCGGGCGATATTTATTATGTG 59.668 45.833 18.49 0.00 0.00 3.21
340 341 5.163794 CGGGCGATATTTATTATGTGGTTCC 60.164 44.000 0.00 0.00 0.00 3.62
393 402 5.115480 TGTTTTGAGCCCTTGAAATTGAAC 58.885 37.500 0.00 0.00 0.00 3.18
424 433 0.819582 AGCCCATGAAATTGAAGGCG 59.180 50.000 0.00 0.00 45.16 5.52
441 450 0.101219 GCGTTTGGCCCATCTCATTC 59.899 55.000 0.00 0.00 34.80 2.67
449 458 1.414061 CCCATCTCATTCCGCCCTCT 61.414 60.000 0.00 0.00 0.00 3.69
470 479 0.718904 TCGTCGCCGAAATGAATGTG 59.281 50.000 0.00 0.00 40.86 3.21
476 485 2.285220 CGCCGAAATGAATGTGTCTAGG 59.715 50.000 0.00 0.00 0.00 3.02
488 497 3.845178 TGTGTCTAGGCGTATTTCAGTG 58.155 45.455 0.00 0.00 0.00 3.66
492 501 4.158949 TGTCTAGGCGTATTTCAGTGCTAA 59.841 41.667 0.00 0.00 0.00 3.09
499 508 7.214381 AGGCGTATTTCAGTGCTAAATACATA 58.786 34.615 19.55 0.00 44.51 2.29
500 509 7.878127 AGGCGTATTTCAGTGCTAAATACATAT 59.122 33.333 19.55 7.98 44.51 1.78
502 511 7.478667 GCGTATTTCAGTGCTAAATACATATGC 59.521 37.037 19.55 13.74 44.51 3.14
525 534 5.050295 GCTTAAGCGACAACTAATATGGGAC 60.050 44.000 12.53 0.00 0.00 4.46
530 539 3.317149 CGACAACTAATATGGGACGGAGA 59.683 47.826 0.00 0.00 0.00 3.71
627 637 6.814644 TCATGGAAGTACAAGTATTTACCACG 59.185 38.462 0.00 0.00 0.00 4.94
629 639 7.225784 TGGAAGTACAAGTATTTACCACGTA 57.774 36.000 0.00 0.00 0.00 3.57
680 690 6.720112 ATGATTCATCAACCAGTATTTGGG 57.280 37.500 0.00 0.00 44.22 4.12
707 717 9.038072 TGGATGTTATGTTTCTAGTACACCTAA 57.962 33.333 0.00 0.00 0.00 2.69
708 718 9.880157 GGATGTTATGTTTCTAGTACACCTAAA 57.120 33.333 0.00 0.00 0.00 1.85
723 733 8.999431 AGTACACCTAAACACAACATTATGAAG 58.001 33.333 0.00 0.00 0.00 3.02
777 787 6.508777 ACCACAACCACAACAATAATGTAAC 58.491 36.000 0.00 0.00 39.40 2.50
849 859 4.381932 CCAAGAAGAAAAAGCAGTTGGTGT 60.382 41.667 0.00 0.00 0.00 4.16
850 860 4.376340 AGAAGAAAAAGCAGTTGGTGTG 57.624 40.909 0.00 0.00 0.00 3.82
851 861 3.131046 AGAAGAAAAAGCAGTTGGTGTGG 59.869 43.478 0.00 0.00 0.00 4.17
852 862 2.456577 AGAAAAAGCAGTTGGTGTGGT 58.543 42.857 0.00 0.00 0.00 4.16
853 863 2.166254 AGAAAAAGCAGTTGGTGTGGTG 59.834 45.455 0.00 0.00 0.00 4.17
952 972 2.083522 GTCGCTCGCTCACACTCAC 61.084 63.158 0.00 0.00 0.00 3.51
1011 1048 0.924823 AAGCAGAGATGGGCTCCATT 59.075 50.000 7.97 0.08 45.26 3.16
1161 1198 2.657237 CTGACTTCCGCCGAGGTT 59.343 61.111 0.00 0.00 41.99 3.50
1256 1293 0.459759 TACAACGTGGTGTCGTGCAA 60.460 50.000 5.64 0.00 43.38 4.08
1327 1364 0.949105 GGTGTGCAAGTACCTCACCG 60.949 60.000 4.82 0.00 37.19 4.94
1359 1396 2.887568 GTCTCCATGTCGGCGCTG 60.888 66.667 10.86 10.86 33.14 5.18
1434 1482 6.867816 CGATCATCCCTCTTTCTTCATCTTAG 59.132 42.308 0.00 0.00 0.00 2.18
1442 1490 5.880901 TCTTTCTTCATCTTAGTTTGCCCT 58.119 37.500 0.00 0.00 0.00 5.19
1443 1491 5.940470 TCTTTCTTCATCTTAGTTTGCCCTC 59.060 40.000 0.00 0.00 0.00 4.30
1444 1492 4.908601 TCTTCATCTTAGTTTGCCCTCA 57.091 40.909 0.00 0.00 0.00 3.86
1493 3005 2.181021 GGCAAGCAGAGCACATGC 59.819 61.111 0.00 0.00 44.18 4.06
1642 3539 4.368808 CCGCGCTTCAACCACGTG 62.369 66.667 9.08 9.08 37.08 4.49
1876 3773 3.419759 GTCGGCGGCGACATGTTT 61.420 61.111 46.36 0.00 38.62 2.83
1970 3867 1.800805 GCTGCTCAAGAACTGCTACA 58.199 50.000 0.00 0.00 0.00 2.74
1982 3879 4.460873 GCTACAACGCCTTGCCGC 62.461 66.667 0.00 0.00 0.00 6.53
2029 3926 3.728373 ATCCTGCCGGTGAACCCC 61.728 66.667 1.90 0.00 0.00 4.95
2229 4126 0.984230 ATGGTCCATGACAACGTCCT 59.016 50.000 2.68 0.00 33.68 3.85
2244 4143 1.202734 CGTCCTCCCATCTGATGCATT 60.203 52.381 12.17 0.00 0.00 3.56
2245 4144 2.037641 CGTCCTCCCATCTGATGCATTA 59.962 50.000 12.17 0.00 0.00 1.90
2246 4145 3.494924 CGTCCTCCCATCTGATGCATTAA 60.495 47.826 12.17 0.00 0.00 1.40
2247 4146 4.660168 GTCCTCCCATCTGATGCATTAAT 58.340 43.478 12.17 0.00 0.00 1.40
2248 4147 5.075493 GTCCTCCCATCTGATGCATTAATT 58.925 41.667 12.17 0.00 0.00 1.40
2251 4150 5.537295 CCTCCCATCTGATGCATTAATTCAA 59.463 40.000 12.17 0.00 0.00 2.69
2274 4173 3.411446 TGCATGTGTACTTTCTCTTGGG 58.589 45.455 0.00 0.00 0.00 4.12
2278 4177 5.562890 GCATGTGTACTTTCTCTTGGGTTTC 60.563 44.000 0.00 0.00 0.00 2.78
2301 4204 8.704849 TTCCCTTAATTTTGTCATTCTCTGAA 57.295 30.769 0.00 0.00 35.07 3.02
2373 4311 8.143835 ACTGCCATTAATAATGTTAATTGCTCC 58.856 33.333 15.59 0.00 35.39 4.70
2394 4332 7.094549 TGCTCCTAATGGTTGTGTGTATTAAAC 60.095 37.037 0.00 0.00 34.23 2.01
2401 4339 4.216902 GGTTGTGTGTATTAAACTCCACCC 59.783 45.833 0.01 0.00 32.77 4.61
2436 4575 9.912634 AGAAAAATGGTTGTGTGTATCTTATTG 57.087 29.630 0.00 0.00 0.00 1.90
2495 4638 9.802039 TTATTTTAACAAGGATGTAACCTCACT 57.198 29.630 0.00 0.00 39.40 3.41
2497 4640 9.975218 ATTTTAACAAGGATGTAACCTCACTAT 57.025 29.630 0.00 0.00 39.40 2.12
2500 4643 9.880157 TTAACAAGGATGTAACCTCACTATAAC 57.120 33.333 0.00 0.00 39.40 1.89
2525 4668 7.235193 ACATTATGAGTGAGATAAGGCTCATCT 59.765 37.037 0.00 0.00 45.75 2.90
2529 4672 6.810911 TGAGTGAGATAAGGCTCATCTTAAC 58.189 40.000 0.69 4.18 45.75 2.01
2530 4673 6.381133 TGAGTGAGATAAGGCTCATCTTAACA 59.619 38.462 0.69 0.00 45.75 2.41
2535 4678 5.996513 AGATAAGGCTCATCTTAACATGCAG 59.003 40.000 0.00 0.00 33.54 4.41
2573 4716 5.452078 AACAACTACACCATTCAACCATG 57.548 39.130 0.00 0.00 0.00 3.66
2737 4880 9.206870 TCTAAAATTTCATCAACCAATTCTTGC 57.793 29.630 0.00 0.00 0.00 4.01
2738 4881 7.804843 AAAATTTCATCAACCAATTCTTGCA 57.195 28.000 0.00 0.00 0.00 4.08
2739 4882 7.989416 AAATTTCATCAACCAATTCTTGCAT 57.011 28.000 0.00 0.00 0.00 3.96
2740 4883 7.605410 AATTTCATCAACCAATTCTTGCATC 57.395 32.000 0.00 0.00 0.00 3.91
2741 4884 5.725325 TTCATCAACCAATTCTTGCATCA 57.275 34.783 0.00 0.00 0.00 3.07
2742 4885 5.725325 TCATCAACCAATTCTTGCATCAA 57.275 34.783 0.00 0.00 0.00 2.57
2743 4886 5.472148 TCATCAACCAATTCTTGCATCAAC 58.528 37.500 0.00 0.00 0.00 3.18
2744 4887 4.933505 TCAACCAATTCTTGCATCAACA 57.066 36.364 0.00 0.00 0.00 3.33
2745 4888 4.619973 TCAACCAATTCTTGCATCAACAC 58.380 39.130 0.00 0.00 0.00 3.32
2746 4889 3.287312 ACCAATTCTTGCATCAACACG 57.713 42.857 0.00 0.00 0.00 4.49
2747 4890 2.622942 ACCAATTCTTGCATCAACACGT 59.377 40.909 0.00 0.00 0.00 4.49
2748 4891 2.981805 CCAATTCTTGCATCAACACGTG 59.018 45.455 15.48 15.48 0.00 4.49
2749 4892 2.981805 CAATTCTTGCATCAACACGTGG 59.018 45.455 21.57 2.57 0.00 4.94
2750 4893 0.950836 TTCTTGCATCAACACGTGGG 59.049 50.000 21.57 11.85 0.00 4.61
2751 4894 0.888736 TCTTGCATCAACACGTGGGG 60.889 55.000 21.57 11.46 0.00 4.96
2752 4895 1.152860 TTGCATCAACACGTGGGGT 60.153 52.632 21.57 4.81 0.00 4.95
2753 4896 0.108774 TTGCATCAACACGTGGGGTA 59.891 50.000 21.57 2.37 0.00 3.69
2754 4897 0.326595 TGCATCAACACGTGGGGTAT 59.673 50.000 21.57 4.84 0.00 2.73
2755 4898 1.014352 GCATCAACACGTGGGGTATC 58.986 55.000 21.57 0.84 0.00 2.24
2756 4899 1.663695 CATCAACACGTGGGGTATCC 58.336 55.000 21.57 0.00 0.00 2.59
2757 4900 1.209504 CATCAACACGTGGGGTATCCT 59.790 52.381 21.57 0.00 36.20 3.24
2758 4901 2.234896 TCAACACGTGGGGTATCCTA 57.765 50.000 21.57 0.00 36.20 2.94
2759 4902 1.826720 TCAACACGTGGGGTATCCTAC 59.173 52.381 21.57 0.00 40.66 3.18
2760 4903 1.551430 CAACACGTGGGGTATCCTACA 59.449 52.381 21.57 0.00 43.81 2.74
2761 4904 1.481871 ACACGTGGGGTATCCTACAG 58.518 55.000 21.57 2.99 43.81 2.74
2762 4905 1.272872 ACACGTGGGGTATCCTACAGT 60.273 52.381 21.57 3.64 43.81 3.55
2763 4906 1.829222 CACGTGGGGTATCCTACAGTT 59.171 52.381 7.95 0.00 43.81 3.16
2764 4907 3.025978 CACGTGGGGTATCCTACAGTTA 58.974 50.000 7.95 0.00 43.81 2.24
2765 4908 3.640029 CACGTGGGGTATCCTACAGTTAT 59.360 47.826 7.95 0.00 43.81 1.89
2766 4909 4.828939 CACGTGGGGTATCCTACAGTTATA 59.171 45.833 7.95 0.00 43.81 0.98
2767 4910 5.479375 CACGTGGGGTATCCTACAGTTATAT 59.521 44.000 7.95 0.00 43.81 0.86
2768 4911 6.660521 CACGTGGGGTATCCTACAGTTATATA 59.339 42.308 7.95 0.00 43.81 0.86
2769 4912 6.660949 ACGTGGGGTATCCTACAGTTATATAC 59.339 42.308 9.46 0.00 43.81 1.47
2770 4913 6.888632 CGTGGGGTATCCTACAGTTATATACT 59.111 42.308 9.46 0.00 43.81 2.12
2771 4914 8.049117 CGTGGGGTATCCTACAGTTATATACTA 58.951 40.741 9.46 0.00 43.81 1.82
2772 4915 9.933240 GTGGGGTATCCTACAGTTATATACTAT 57.067 37.037 3.15 0.00 43.20 2.12
2803 4946 8.991783 ATAAATGATGACATGATTTCACTCCT 57.008 30.769 15.00 0.00 36.79 3.69
2804 4947 7.713734 AAATGATGACATGATTTCACTCCTT 57.286 32.000 7.00 0.00 36.79 3.36
2805 4948 7.713734 AATGATGACATGATTTCACTCCTTT 57.286 32.000 0.00 0.00 36.79 3.11
2806 4949 8.812513 AATGATGACATGATTTCACTCCTTTA 57.187 30.769 0.00 0.00 36.79 1.85
2807 4950 8.991783 ATGATGACATGATTTCACTCCTTTAT 57.008 30.769 0.00 0.00 35.21 1.40
2808 4951 8.812513 TGATGACATGATTTCACTCCTTTATT 57.187 30.769 0.00 0.00 0.00 1.40
2809 4952 8.680001 TGATGACATGATTTCACTCCTTTATTG 58.320 33.333 0.00 0.00 0.00 1.90
2810 4953 8.812513 ATGACATGATTTCACTCCTTTATTGA 57.187 30.769 0.00 0.00 0.00 2.57
2811 4954 8.272545 TGACATGATTTCACTCCTTTATTGAG 57.727 34.615 0.00 0.00 35.92 3.02
2812 4955 7.884877 TGACATGATTTCACTCCTTTATTGAGT 59.115 33.333 0.00 0.00 43.70 3.41
2813 4956 9.383519 GACATGATTTCACTCCTTTATTGAGTA 57.616 33.333 0.00 0.00 41.02 2.59
2814 4957 9.911788 ACATGATTTCACTCCTTTATTGAGTAT 57.088 29.630 0.00 0.00 41.02 2.12
2878 5021 8.469309 TTGATCTTTCTCTGGAAAAATTGTCT 57.531 30.769 0.00 0.00 40.41 3.41
2879 5022 9.573166 TTGATCTTTCTCTGGAAAAATTGTCTA 57.427 29.630 0.00 0.00 40.41 2.59
2880 5023 9.745018 TGATCTTTCTCTGGAAAAATTGTCTAT 57.255 29.630 0.00 0.00 40.41 1.98
2882 5025 9.745018 ATCTTTCTCTGGAAAAATTGTCTATGA 57.255 29.630 0.00 0.00 40.41 2.15
2883 5026 9.573166 TCTTTCTCTGGAAAAATTGTCTATGAA 57.427 29.630 0.00 0.00 40.41 2.57
2886 5029 8.868522 TCTCTGGAAAAATTGTCTATGAATGT 57.131 30.769 0.00 0.00 0.00 2.71
2887 5030 9.958180 TCTCTGGAAAAATTGTCTATGAATGTA 57.042 29.630 0.00 0.00 0.00 2.29
2912 5055 8.961294 ATTATTGCTTAGATAGATCTGATGCC 57.039 34.615 5.18 0.00 37.76 4.40
2913 5056 6.623979 ATTGCTTAGATAGATCTGATGCCT 57.376 37.500 5.18 0.00 37.76 4.75
2914 5057 6.430962 TTGCTTAGATAGATCTGATGCCTT 57.569 37.500 5.18 0.00 37.76 4.35
2915 5058 5.791666 TGCTTAGATAGATCTGATGCCTTG 58.208 41.667 5.18 0.00 37.76 3.61
2916 5059 5.306419 TGCTTAGATAGATCTGATGCCTTGT 59.694 40.000 5.18 0.00 37.76 3.16
2917 5060 6.494835 TGCTTAGATAGATCTGATGCCTTGTA 59.505 38.462 5.18 0.00 37.76 2.41
2918 5061 7.015584 TGCTTAGATAGATCTGATGCCTTGTAA 59.984 37.037 5.18 0.00 37.76 2.41
2919 5062 7.330700 GCTTAGATAGATCTGATGCCTTGTAAC 59.669 40.741 5.18 0.00 37.76 2.50
2920 5063 6.107901 AGATAGATCTGATGCCTTGTAACC 57.892 41.667 5.18 0.00 35.42 2.85
2921 5064 5.604231 AGATAGATCTGATGCCTTGTAACCA 59.396 40.000 5.18 0.00 35.42 3.67
2922 5065 4.785346 AGATCTGATGCCTTGTAACCAT 57.215 40.909 0.00 0.00 0.00 3.55
2923 5066 4.458397 AGATCTGATGCCTTGTAACCATG 58.542 43.478 0.00 0.00 0.00 3.66
2924 5067 3.998913 TCTGATGCCTTGTAACCATGA 57.001 42.857 0.00 0.00 0.00 3.07
2925 5068 3.877559 TCTGATGCCTTGTAACCATGAG 58.122 45.455 0.00 0.00 0.00 2.90
2926 5069 2.947652 CTGATGCCTTGTAACCATGAGG 59.052 50.000 0.00 0.00 42.21 3.86
2936 5079 3.474806 CCATGAGGTCACGCGTTC 58.525 61.111 10.22 5.12 0.00 3.95
2937 5080 1.374125 CCATGAGGTCACGCGTTCA 60.374 57.895 10.22 12.09 0.00 3.18
2938 5081 0.948623 CCATGAGGTCACGCGTTCAA 60.949 55.000 10.22 0.00 0.00 2.69
2939 5082 0.439985 CATGAGGTCACGCGTTCAAG 59.560 55.000 10.22 3.96 0.00 3.02
2940 5083 0.033504 ATGAGGTCACGCGTTCAAGT 59.966 50.000 10.22 0.00 0.00 3.16
2941 5084 0.596600 TGAGGTCACGCGTTCAAGTC 60.597 55.000 10.22 3.52 0.00 3.01
2942 5085 1.282930 GAGGTCACGCGTTCAAGTCC 61.283 60.000 10.22 5.66 0.00 3.85
2943 5086 1.300697 GGTCACGCGTTCAAGTCCT 60.301 57.895 10.22 0.00 0.00 3.85
2944 5087 0.038892 GGTCACGCGTTCAAGTCCTA 60.039 55.000 10.22 0.00 0.00 2.94
2945 5088 1.603678 GGTCACGCGTTCAAGTCCTAA 60.604 52.381 10.22 0.00 0.00 2.69
2946 5089 2.129607 GTCACGCGTTCAAGTCCTAAA 58.870 47.619 10.22 0.00 0.00 1.85
2947 5090 2.540931 GTCACGCGTTCAAGTCCTAAAA 59.459 45.455 10.22 0.00 0.00 1.52
2948 5091 3.001533 GTCACGCGTTCAAGTCCTAAAAA 59.998 43.478 10.22 0.00 0.00 1.94
2949 5092 3.001533 TCACGCGTTCAAGTCCTAAAAAC 59.998 43.478 10.22 0.00 0.00 2.43
2950 5093 2.937799 ACGCGTTCAAGTCCTAAAAACA 59.062 40.909 5.58 0.00 0.00 2.83
2951 5094 3.001939 ACGCGTTCAAGTCCTAAAAACAG 59.998 43.478 5.58 0.00 0.00 3.16
2952 5095 3.297472 GCGTTCAAGTCCTAAAAACAGC 58.703 45.455 0.00 0.00 0.00 4.40
2953 5096 3.852205 GCGTTCAAGTCCTAAAAACAGCC 60.852 47.826 0.00 0.00 0.00 4.85
2954 5097 3.564225 CGTTCAAGTCCTAAAAACAGCCT 59.436 43.478 0.00 0.00 0.00 4.58
2955 5098 4.319549 CGTTCAAGTCCTAAAAACAGCCTC 60.320 45.833 0.00 0.00 0.00 4.70
2956 5099 4.706842 TCAAGTCCTAAAAACAGCCTCT 57.293 40.909 0.00 0.00 0.00 3.69
2957 5100 5.048846 TCAAGTCCTAAAAACAGCCTCTT 57.951 39.130 0.00 0.00 0.00 2.85
2958 5101 6.182507 TCAAGTCCTAAAAACAGCCTCTTA 57.817 37.500 0.00 0.00 0.00 2.10
2959 5102 5.995897 TCAAGTCCTAAAAACAGCCTCTTAC 59.004 40.000 0.00 0.00 0.00 2.34
2960 5103 5.562298 AGTCCTAAAAACAGCCTCTTACA 57.438 39.130 0.00 0.00 0.00 2.41
2961 5104 5.552178 AGTCCTAAAAACAGCCTCTTACAG 58.448 41.667 0.00 0.00 0.00 2.74
2962 5105 5.307196 AGTCCTAAAAACAGCCTCTTACAGA 59.693 40.000 0.00 0.00 0.00 3.41
2963 5106 5.995897 GTCCTAAAAACAGCCTCTTACAGAA 59.004 40.000 0.00 0.00 0.00 3.02
2964 5107 6.485648 GTCCTAAAAACAGCCTCTTACAGAAA 59.514 38.462 0.00 0.00 0.00 2.52
2965 5108 7.175119 GTCCTAAAAACAGCCTCTTACAGAAAT 59.825 37.037 0.00 0.00 0.00 2.17
2966 5109 7.174946 TCCTAAAAACAGCCTCTTACAGAAATG 59.825 37.037 0.00 0.00 0.00 2.32
2967 5110 6.715347 AAAAACAGCCTCTTACAGAAATGT 57.285 33.333 0.00 0.00 0.00 2.71
2968 5111 7.817418 AAAAACAGCCTCTTACAGAAATGTA 57.183 32.000 0.00 0.00 0.00 2.29
2969 5112 7.440523 AAAACAGCCTCTTACAGAAATGTAG 57.559 36.000 0.00 0.00 0.00 2.74
2970 5113 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2971 5114 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2972 5115 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2973 5116 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2974 5117 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2975 5118 5.944007 GCCTCTTACAGAAATGTAGGGAAAA 59.056 40.000 0.00 0.00 0.00 2.29
2976 5119 6.094186 GCCTCTTACAGAAATGTAGGGAAAAG 59.906 42.308 0.00 0.00 0.00 2.27
2977 5120 7.168905 CCTCTTACAGAAATGTAGGGAAAAGT 58.831 38.462 0.00 0.00 0.00 2.66
2978 5121 7.665974 CCTCTTACAGAAATGTAGGGAAAAGTT 59.334 37.037 0.00 0.00 0.00 2.66
2979 5122 8.391075 TCTTACAGAAATGTAGGGAAAAGTTG 57.609 34.615 0.00 0.00 0.00 3.16
2980 5123 5.453567 ACAGAAATGTAGGGAAAAGTTGC 57.546 39.130 0.00 0.00 0.00 4.17
2981 5124 4.892934 ACAGAAATGTAGGGAAAAGTTGCA 59.107 37.500 0.00 0.00 0.00 4.08
2982 5125 5.539955 ACAGAAATGTAGGGAAAAGTTGCAT 59.460 36.000 0.00 0.00 0.00 3.96
2983 5126 6.719370 ACAGAAATGTAGGGAAAAGTTGCATA 59.281 34.615 0.00 0.00 0.00 3.14
2984 5127 7.397192 ACAGAAATGTAGGGAAAAGTTGCATAT 59.603 33.333 0.00 0.00 0.00 1.78
2985 5128 8.902806 CAGAAATGTAGGGAAAAGTTGCATATA 58.097 33.333 0.00 0.00 0.00 0.86
2986 5129 9.474313 AGAAATGTAGGGAAAAGTTGCATATAA 57.526 29.630 0.00 0.00 0.00 0.98
2991 5134 9.555727 TGTAGGGAAAAGTTGCATATAATAGAC 57.444 33.333 0.00 0.00 0.00 2.59
2992 5135 9.000486 GTAGGGAAAAGTTGCATATAATAGACC 58.000 37.037 0.00 0.00 0.00 3.85
2993 5136 6.710744 AGGGAAAAGTTGCATATAATAGACCG 59.289 38.462 0.00 0.00 0.00 4.79
2994 5137 6.708949 GGGAAAAGTTGCATATAATAGACCGA 59.291 38.462 0.00 0.00 0.00 4.69
2995 5138 7.227910 GGGAAAAGTTGCATATAATAGACCGAA 59.772 37.037 0.00 0.00 0.00 4.30
2996 5139 8.617809 GGAAAAGTTGCATATAATAGACCGAAA 58.382 33.333 0.00 0.00 0.00 3.46
2997 5140 9.651718 GAAAAGTTGCATATAATAGACCGAAAG 57.348 33.333 0.00 0.00 0.00 2.62
2998 5141 8.732746 AAAGTTGCATATAATAGACCGAAAGT 57.267 30.769 0.00 0.00 0.00 2.66
2999 5142 7.715265 AGTTGCATATAATAGACCGAAAGTG 57.285 36.000 0.00 0.00 0.00 3.16
3000 5143 7.497595 AGTTGCATATAATAGACCGAAAGTGA 58.502 34.615 0.00 0.00 0.00 3.41
3001 5144 8.150945 AGTTGCATATAATAGACCGAAAGTGAT 58.849 33.333 0.00 0.00 0.00 3.06
3002 5145 8.436200 GTTGCATATAATAGACCGAAAGTGATC 58.564 37.037 0.00 0.00 0.00 2.92
3003 5146 6.806739 TGCATATAATAGACCGAAAGTGATCG 59.193 38.462 0.00 0.00 42.37 3.69
3004 5147 7.027760 GCATATAATAGACCGAAAGTGATCGA 58.972 38.462 0.00 0.00 45.48 3.59
3005 5148 7.541091 GCATATAATAGACCGAAAGTGATCGAA 59.459 37.037 0.00 0.00 45.48 3.71
3006 5149 8.851416 CATATAATAGACCGAAAGTGATCGAAC 58.149 37.037 0.00 0.00 45.48 3.95
3007 5150 2.365408 AGACCGAAAGTGATCGAACC 57.635 50.000 0.00 0.00 45.48 3.62
3008 5151 1.067071 AGACCGAAAGTGATCGAACCC 60.067 52.381 0.00 0.00 45.48 4.11
3009 5152 0.974383 ACCGAAAGTGATCGAACCCT 59.026 50.000 0.00 0.00 45.48 4.34
3010 5153 1.337823 ACCGAAAGTGATCGAACCCTG 60.338 52.381 0.00 0.00 45.48 4.45
3011 5154 0.721718 CGAAAGTGATCGAACCCTGC 59.278 55.000 0.00 0.00 45.48 4.85
3012 5155 0.721718 GAAAGTGATCGAACCCTGCG 59.278 55.000 0.00 0.00 0.00 5.18
3013 5156 1.298859 AAAGTGATCGAACCCTGCGC 61.299 55.000 0.00 0.00 0.00 6.09
3014 5157 2.434185 GTGATCGAACCCTGCGCA 60.434 61.111 10.98 10.98 0.00 6.09
3015 5158 2.032634 GTGATCGAACCCTGCGCAA 61.033 57.895 13.05 0.00 0.00 4.85
3016 5159 1.741401 TGATCGAACCCTGCGCAAG 60.741 57.895 13.05 4.91 43.44 4.01
3017 5160 2.436646 ATCGAACCCTGCGCAAGG 60.437 61.111 23.55 23.55 46.94 3.61
3024 5167 2.512515 CCTGCGCAAGGGAGCTAC 60.513 66.667 13.05 0.00 43.15 3.58
3025 5168 2.265739 CTGCGCAAGGGAGCTACA 59.734 61.111 13.05 0.00 40.83 2.74
3026 5169 1.375908 CTGCGCAAGGGAGCTACAA 60.376 57.895 13.05 0.00 40.83 2.41
3027 5170 1.364626 CTGCGCAAGGGAGCTACAAG 61.365 60.000 13.05 0.00 40.83 3.16
3028 5171 2.754995 GCGCAAGGGAGCTACAAGC 61.755 63.158 0.30 0.00 38.95 4.01
3029 5172 1.375908 CGCAAGGGAGCTACAAGCA 60.376 57.895 0.00 0.00 45.56 3.91
3030 5173 1.639298 CGCAAGGGAGCTACAAGCAC 61.639 60.000 0.00 0.00 45.56 4.40
3031 5174 0.322008 GCAAGGGAGCTACAAGCACT 60.322 55.000 0.00 0.00 45.56 4.40
3032 5175 1.066143 GCAAGGGAGCTACAAGCACTA 60.066 52.381 0.00 0.00 45.56 2.74
3033 5176 2.615493 GCAAGGGAGCTACAAGCACTAA 60.615 50.000 0.00 0.00 45.56 2.24
3034 5177 3.265791 CAAGGGAGCTACAAGCACTAAG 58.734 50.000 0.00 0.00 45.56 2.18
3035 5178 1.208293 AGGGAGCTACAAGCACTAAGC 59.792 52.381 0.00 0.00 45.56 3.09
3079 5222 9.429109 TCCTCAGATAATATATTAATACCGGCA 57.571 33.333 9.20 0.00 0.00 5.69
3090 5233 5.821516 TTAATACCGGCATTGTTAAGTGG 57.178 39.130 10.34 0.00 0.00 4.00
3091 5234 3.637911 ATACCGGCATTGTTAAGTGGA 57.362 42.857 0.00 0.00 0.00 4.02
3092 5235 2.507407 ACCGGCATTGTTAAGTGGAT 57.493 45.000 0.00 0.00 0.00 3.41
3093 5236 2.091541 ACCGGCATTGTTAAGTGGATG 58.908 47.619 0.00 0.00 0.00 3.51
3094 5237 1.202290 CCGGCATTGTTAAGTGGATGC 60.202 52.381 0.00 0.00 43.06 3.91
3095 5238 1.472082 CGGCATTGTTAAGTGGATGCA 59.528 47.619 9.09 0.00 44.99 3.96
3096 5239 2.731968 CGGCATTGTTAAGTGGATGCAC 60.732 50.000 9.70 9.70 44.99 4.57
3097 5240 2.417243 GGCATTGTTAAGTGGATGCACC 60.417 50.000 14.38 0.00 44.99 5.01
3098 5241 2.417243 GCATTGTTAAGTGGATGCACCC 60.417 50.000 14.38 0.00 43.23 4.61
3099 5242 2.666272 TTGTTAAGTGGATGCACCCA 57.334 45.000 14.38 0.00 38.00 4.51
3100 5243 2.666272 TGTTAAGTGGATGCACCCAA 57.334 45.000 14.38 5.45 38.06 4.12
3101 5244 2.513753 TGTTAAGTGGATGCACCCAAG 58.486 47.619 14.38 0.00 38.06 3.61
3102 5245 1.202348 GTTAAGTGGATGCACCCAAGC 59.798 52.381 14.38 0.00 38.06 4.01
3103 5246 0.698238 TAAGTGGATGCACCCAAGCT 59.302 50.000 14.38 0.00 38.06 3.74
3104 5247 0.178953 AAGTGGATGCACCCAAGCTT 60.179 50.000 14.38 0.00 38.06 3.74
3105 5248 0.610232 AGTGGATGCACCCAAGCTTC 60.610 55.000 14.38 0.00 38.06 3.86
3106 5249 0.610232 GTGGATGCACCCAAGCTTCT 60.610 55.000 0.00 0.00 38.06 2.85
3107 5250 0.609957 TGGATGCACCCAAGCTTCTG 60.610 55.000 0.00 0.00 38.37 3.02
3108 5251 1.318158 GGATGCACCCAAGCTTCTGG 61.318 60.000 9.53 9.53 38.37 3.86
3109 5252 1.941999 GATGCACCCAAGCTTCTGGC 61.942 60.000 10.78 6.69 42.19 4.85
3120 5263 1.922570 GCTTCTGGCTGCAATCATTG 58.077 50.000 0.50 0.00 38.06 2.82
3136 5279 7.522901 CAATCATTGCAAATAATGGAACGAA 57.477 32.000 1.71 0.00 42.55 3.85
3137 5280 7.961855 CAATCATTGCAAATAATGGAACGAAA 58.038 30.769 1.71 0.00 42.55 3.46
3138 5281 7.760131 ATCATTGCAAATAATGGAACGAAAG 57.240 32.000 1.71 0.00 42.55 2.62
3139 5282 6.918626 TCATTGCAAATAATGGAACGAAAGA 58.081 32.000 1.71 0.00 42.55 2.52
3140 5283 7.374272 TCATTGCAAATAATGGAACGAAAGAA 58.626 30.769 1.71 0.00 42.55 2.52
3141 5284 7.328249 TCATTGCAAATAATGGAACGAAAGAAC 59.672 33.333 1.71 0.00 42.55 3.01
3142 5285 6.325919 TGCAAATAATGGAACGAAAGAACT 57.674 33.333 0.00 0.00 0.00 3.01
3143 5286 6.378582 TGCAAATAATGGAACGAAAGAACTC 58.621 36.000 0.00 0.00 0.00 3.01
3144 5287 5.800438 GCAAATAATGGAACGAAAGAACTCC 59.200 40.000 0.00 0.00 0.00 3.85
3145 5288 6.349363 GCAAATAATGGAACGAAAGAACTCCT 60.349 38.462 0.00 0.00 0.00 3.69
3146 5289 7.148306 GCAAATAATGGAACGAAAGAACTCCTA 60.148 37.037 0.00 0.00 0.00 2.94
3147 5290 7.845066 AATAATGGAACGAAAGAACTCCTAC 57.155 36.000 0.00 0.00 0.00 3.18
3148 5291 4.884668 ATGGAACGAAAGAACTCCTACA 57.115 40.909 0.00 0.00 0.00 2.74
3149 5292 4.884668 TGGAACGAAAGAACTCCTACAT 57.115 40.909 0.00 0.00 0.00 2.29
3150 5293 5.223449 TGGAACGAAAGAACTCCTACATT 57.777 39.130 0.00 0.00 0.00 2.71
3151 5294 5.235516 TGGAACGAAAGAACTCCTACATTC 58.764 41.667 0.00 0.00 0.00 2.67
3152 5295 5.221561 TGGAACGAAAGAACTCCTACATTCA 60.222 40.000 0.00 0.00 0.00 2.57
3153 5296 5.699458 GGAACGAAAGAACTCCTACATTCAA 59.301 40.000 0.00 0.00 0.00 2.69
3154 5297 6.128526 GGAACGAAAGAACTCCTACATTCAAG 60.129 42.308 0.00 0.00 0.00 3.02
3155 5298 6.097915 ACGAAAGAACTCCTACATTCAAGA 57.902 37.500 0.00 0.00 0.00 3.02
3156 5299 6.702329 ACGAAAGAACTCCTACATTCAAGAT 58.298 36.000 0.00 0.00 0.00 2.40
3157 5300 6.591834 ACGAAAGAACTCCTACATTCAAGATG 59.408 38.462 0.00 0.00 0.00 2.90
3158 5301 6.036517 CGAAAGAACTCCTACATTCAAGATGG 59.963 42.308 0.00 0.00 0.00 3.51
3159 5302 6.627087 AAGAACTCCTACATTCAAGATGGA 57.373 37.500 0.00 0.00 0.00 3.41
3160 5303 6.232581 AGAACTCCTACATTCAAGATGGAG 57.767 41.667 0.00 0.00 44.61 3.86
3161 5304 4.414337 ACTCCTACATTCAAGATGGAGC 57.586 45.455 0.00 0.00 43.34 4.70
3162 5305 3.776969 ACTCCTACATTCAAGATGGAGCA 59.223 43.478 0.00 0.00 43.34 4.26
3163 5306 4.125703 CTCCTACATTCAAGATGGAGCAC 58.874 47.826 0.00 0.00 35.35 4.40
3164 5307 3.118261 TCCTACATTCAAGATGGAGCACC 60.118 47.826 0.00 0.00 0.00 5.01
3165 5308 1.742761 ACATTCAAGATGGAGCACCG 58.257 50.000 0.00 0.00 39.42 4.94
3166 5309 1.278985 ACATTCAAGATGGAGCACCGA 59.721 47.619 0.00 0.00 39.42 4.69
3167 5310 1.938577 CATTCAAGATGGAGCACCGAG 59.061 52.381 0.00 0.00 39.42 4.63
3168 5311 0.976641 TTCAAGATGGAGCACCGAGT 59.023 50.000 0.00 0.00 39.42 4.18
3169 5312 0.976641 TCAAGATGGAGCACCGAGTT 59.023 50.000 0.00 0.00 39.42 3.01
3170 5313 2.176045 TCAAGATGGAGCACCGAGTTA 58.824 47.619 0.00 0.00 39.42 2.24
3171 5314 2.094182 TCAAGATGGAGCACCGAGTTAC 60.094 50.000 0.00 0.00 39.42 2.50
3172 5315 0.824759 AGATGGAGCACCGAGTTACC 59.175 55.000 0.00 0.00 39.42 2.85
3173 5316 0.535335 GATGGAGCACCGAGTTACCA 59.465 55.000 0.00 0.00 39.42 3.25
3174 5317 1.139058 GATGGAGCACCGAGTTACCAT 59.861 52.381 0.00 0.00 40.21 3.55
3175 5318 0.981183 TGGAGCACCGAGTTACCATT 59.019 50.000 0.00 0.00 39.42 3.16
3176 5319 1.066430 TGGAGCACCGAGTTACCATTC 60.066 52.381 0.00 0.00 39.42 2.67
3177 5320 1.207329 GGAGCACCGAGTTACCATTCT 59.793 52.381 0.00 0.00 0.00 2.40
3178 5321 2.271800 GAGCACCGAGTTACCATTCTG 58.728 52.381 0.00 0.00 0.00 3.02
3179 5322 1.066143 AGCACCGAGTTACCATTCTGG 60.066 52.381 0.00 0.00 45.02 3.86
3180 5323 1.066430 GCACCGAGTTACCATTCTGGA 60.066 52.381 0.00 0.00 40.96 3.86
3181 5324 2.420129 GCACCGAGTTACCATTCTGGAT 60.420 50.000 0.00 0.00 40.96 3.41
3182 5325 3.873910 CACCGAGTTACCATTCTGGATT 58.126 45.455 0.00 0.00 40.96 3.01
3183 5326 4.261801 CACCGAGTTACCATTCTGGATTT 58.738 43.478 0.00 0.00 40.96 2.17
3184 5327 4.332819 CACCGAGTTACCATTCTGGATTTC 59.667 45.833 0.00 0.00 40.96 2.17
3185 5328 4.019681 ACCGAGTTACCATTCTGGATTTCA 60.020 41.667 0.00 0.00 40.96 2.69
3186 5329 5.126067 CCGAGTTACCATTCTGGATTTCAT 58.874 41.667 0.00 0.00 40.96 2.57
3187 5330 5.590259 CCGAGTTACCATTCTGGATTTCATT 59.410 40.000 0.00 0.00 40.96 2.57
3188 5331 6.765989 CCGAGTTACCATTCTGGATTTCATTA 59.234 38.462 0.00 0.00 40.96 1.90
3189 5332 7.445402 CCGAGTTACCATTCTGGATTTCATTAT 59.555 37.037 0.00 0.00 40.96 1.28
3190 5333 8.499162 CGAGTTACCATTCTGGATTTCATTATC 58.501 37.037 0.00 0.00 40.96 1.75
3191 5334 9.342308 GAGTTACCATTCTGGATTTCATTATCA 57.658 33.333 0.00 0.00 40.96 2.15
3192 5335 9.699410 AGTTACCATTCTGGATTTCATTATCAA 57.301 29.630 0.00 0.00 40.96 2.57
3196 5339 8.814931 ACCATTCTGGATTTCATTATCAAAACA 58.185 29.630 0.00 0.00 40.96 2.83
3197 5340 9.090692 CCATTCTGGATTTCATTATCAAAACAC 57.909 33.333 0.00 0.00 40.96 3.32
3198 5341 9.865321 CATTCTGGATTTCATTATCAAAACACT 57.135 29.630 0.00 0.00 0.00 3.55
3199 5342 9.865321 ATTCTGGATTTCATTATCAAAACACTG 57.135 29.630 0.00 0.00 0.00 3.66
3200 5343 7.829725 TCTGGATTTCATTATCAAAACACTGG 58.170 34.615 0.00 0.00 0.00 4.00
3201 5344 7.669304 TCTGGATTTCATTATCAAAACACTGGA 59.331 33.333 0.00 0.00 0.00 3.86
3202 5345 8.365060 TGGATTTCATTATCAAAACACTGGAT 57.635 30.769 0.00 0.00 0.00 3.41
3203 5346 8.469200 TGGATTTCATTATCAAAACACTGGATC 58.531 33.333 0.00 0.00 0.00 3.36
3204 5347 8.689972 GGATTTCATTATCAAAACACTGGATCT 58.310 33.333 0.00 0.00 0.00 2.75
3207 5350 7.630242 TCATTATCAAAACACTGGATCTTCC 57.370 36.000 0.00 0.00 36.96 3.46
3208 5351 7.174413 TCATTATCAAAACACTGGATCTTCCA 58.826 34.615 0.00 0.00 45.98 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.452108 GACACATACTGGGCTGGCC 60.452 63.158 14.23 14.23 0.00 5.36
7 8 1.815421 CGACACATACTGGGCTGGC 60.815 63.158 0.00 0.00 0.00 4.85
8 9 0.179100 CTCGACACATACTGGGCTGG 60.179 60.000 0.00 0.00 0.00 4.85
9 10 0.807667 GCTCGACACATACTGGGCTG 60.808 60.000 0.00 0.00 0.00 4.85
10 11 1.517832 GCTCGACACATACTGGGCT 59.482 57.895 0.00 0.00 0.00 5.19
11 12 1.521681 GGCTCGACACATACTGGGC 60.522 63.158 0.00 0.00 0.00 5.36
12 13 0.179100 CAGGCTCGACACATACTGGG 60.179 60.000 0.00 0.00 0.00 4.45
13 14 0.532573 ACAGGCTCGACACATACTGG 59.467 55.000 0.00 0.00 0.00 4.00
14 15 1.633561 CACAGGCTCGACACATACTG 58.366 55.000 0.00 0.00 0.00 2.74
15 16 0.108615 GCACAGGCTCGACACATACT 60.109 55.000 0.00 0.00 36.96 2.12
16 17 0.389817 TGCACAGGCTCGACACATAC 60.390 55.000 0.00 0.00 41.91 2.39
17 18 0.536724 ATGCACAGGCTCGACACATA 59.463 50.000 0.00 0.00 41.91 2.29
18 19 0.742281 GATGCACAGGCTCGACACAT 60.742 55.000 0.00 0.00 41.91 3.21
19 20 1.374631 GATGCACAGGCTCGACACA 60.375 57.895 0.00 0.00 41.91 3.72
20 21 2.447887 CGATGCACAGGCTCGACAC 61.448 63.158 0.33 0.00 40.62 3.67
21 22 2.125952 CGATGCACAGGCTCGACA 60.126 61.111 0.33 0.00 40.62 4.35
22 23 3.558411 GCGATGCACAGGCTCGAC 61.558 66.667 10.67 0.00 40.62 4.20
28 29 3.190849 CAGACCGCGATGCACAGG 61.191 66.667 8.23 0.00 0.00 4.00
29 30 3.857854 GCAGACCGCGATGCACAG 61.858 66.667 20.93 0.76 42.11 3.66
30 31 4.678499 TGCAGACCGCGATGCACA 62.678 61.111 23.49 8.02 46.97 4.57
33 34 2.167808 GATGATGCAGACCGCGATGC 62.168 60.000 19.62 19.62 46.97 3.91
34 35 0.877213 TGATGATGCAGACCGCGATG 60.877 55.000 8.23 4.38 46.97 3.84
35 36 0.034476 ATGATGATGCAGACCGCGAT 59.966 50.000 8.23 0.00 46.97 4.58
36 37 0.673437 TATGATGATGCAGACCGCGA 59.327 50.000 8.23 0.00 46.97 5.87
37 38 1.718396 ATATGATGATGCAGACCGCG 58.282 50.000 0.00 0.00 46.97 6.46
38 39 3.118992 TCCTATATGATGATGCAGACCGC 60.119 47.826 0.00 0.00 42.89 5.68
39 40 4.441217 CCTCCTATATGATGATGCAGACCG 60.441 50.000 0.00 0.00 0.00 4.79
40 41 4.469227 ACCTCCTATATGATGATGCAGACC 59.531 45.833 0.00 0.00 0.00 3.85
41 42 5.395103 GGACCTCCTATATGATGATGCAGAC 60.395 48.000 0.00 0.00 0.00 3.51
42 43 4.713814 GGACCTCCTATATGATGATGCAGA 59.286 45.833 0.00 0.00 0.00 4.26
43 44 4.141756 GGGACCTCCTATATGATGATGCAG 60.142 50.000 0.00 0.00 35.95 4.41
44 45 3.776969 GGGACCTCCTATATGATGATGCA 59.223 47.826 0.00 0.00 35.95 3.96
45 46 4.036518 AGGGACCTCCTATATGATGATGC 58.963 47.826 0.00 0.00 45.98 3.91
46 47 5.028802 ACAGGGACCTCCTATATGATGATG 58.971 45.833 0.00 0.00 46.12 3.07
47 48 5.296909 ACAGGGACCTCCTATATGATGAT 57.703 43.478 0.00 0.00 46.12 2.45
48 49 4.767000 ACAGGGACCTCCTATATGATGA 57.233 45.455 0.00 0.00 46.12 2.92
49 50 4.399618 CGTACAGGGACCTCCTATATGATG 59.600 50.000 0.00 0.00 46.12 3.07
50 51 4.570079 CCGTACAGGGACCTCCTATATGAT 60.570 50.000 0.00 0.00 46.12 2.45
51 52 3.245158 CCGTACAGGGACCTCCTATATGA 60.245 52.174 0.00 0.00 46.12 2.15
52 53 3.090037 CCGTACAGGGACCTCCTATATG 58.910 54.545 0.00 0.00 46.12 1.78
53 54 2.991713 TCCGTACAGGGACCTCCTATAT 59.008 50.000 0.00 0.00 46.12 0.86
54 55 2.421725 TCCGTACAGGGACCTCCTATA 58.578 52.381 0.00 0.00 46.12 1.31
55 56 1.229131 TCCGTACAGGGACCTCCTAT 58.771 55.000 0.00 0.00 46.12 2.57
56 57 2.713967 TCCGTACAGGGACCTCCTA 58.286 57.895 0.00 0.00 46.12 2.94
78 79 7.068470 TGGTACTAATTTGTTTCTCCGGTTTTT 59.932 33.333 0.00 0.00 0.00 1.94
79 80 6.546772 TGGTACTAATTTGTTTCTCCGGTTTT 59.453 34.615 0.00 0.00 0.00 2.43
80 81 6.016860 GTGGTACTAATTTGTTTCTCCGGTTT 60.017 38.462 0.00 0.00 0.00 3.27
81 82 5.471116 GTGGTACTAATTTGTTTCTCCGGTT 59.529 40.000 0.00 0.00 0.00 4.44
82 83 4.999311 GTGGTACTAATTTGTTTCTCCGGT 59.001 41.667 0.00 0.00 0.00 5.28
83 84 4.393990 GGTGGTACTAATTTGTTTCTCCGG 59.606 45.833 0.00 0.00 0.00 5.14
84 85 5.243207 AGGTGGTACTAATTTGTTTCTCCG 58.757 41.667 0.00 0.00 0.00 4.63
85 86 6.072119 CCAAGGTGGTACTAATTTGTTTCTCC 60.072 42.308 0.00 2.45 31.35 3.71
86 87 6.713450 TCCAAGGTGGTACTAATTTGTTTCTC 59.287 38.462 0.00 0.00 39.03 2.87
87 88 6.607019 TCCAAGGTGGTACTAATTTGTTTCT 58.393 36.000 0.00 0.00 39.03 2.52
88 89 6.887626 TCCAAGGTGGTACTAATTTGTTTC 57.112 37.500 0.00 0.00 39.03 2.78
89 90 8.387813 TCTATCCAAGGTGGTACTAATTTGTTT 58.612 33.333 0.00 0.00 39.03 2.83
90 91 7.924541 TCTATCCAAGGTGGTACTAATTTGTT 58.075 34.615 0.00 0.00 39.03 2.83
91 92 7.504926 TCTATCCAAGGTGGTACTAATTTGT 57.495 36.000 0.00 0.00 39.03 2.83
92 93 8.980481 ATTCTATCCAAGGTGGTACTAATTTG 57.020 34.615 0.00 0.00 39.03 2.32
93 94 9.990868 AAATTCTATCCAAGGTGGTACTAATTT 57.009 29.630 0.00 0.00 39.03 1.82
94 95 9.990868 AAAATTCTATCCAAGGTGGTACTAATT 57.009 29.630 0.00 0.00 39.03 1.40
95 96 9.408648 CAAAATTCTATCCAAGGTGGTACTAAT 57.591 33.333 0.00 0.00 39.03 1.73
96 97 8.387813 ACAAAATTCTATCCAAGGTGGTACTAA 58.612 33.333 0.00 0.00 39.03 2.24
97 98 7.924541 ACAAAATTCTATCCAAGGTGGTACTA 58.075 34.615 0.00 0.00 39.03 1.82
98 99 6.790319 ACAAAATTCTATCCAAGGTGGTACT 58.210 36.000 0.00 0.00 39.03 2.73
99 100 7.462571 AACAAAATTCTATCCAAGGTGGTAC 57.537 36.000 0.00 0.00 39.03 3.34
100 101 9.589461 TTTAACAAAATTCTATCCAAGGTGGTA 57.411 29.630 0.00 0.00 39.03 3.25
101 102 8.485578 TTTAACAAAATTCTATCCAAGGTGGT 57.514 30.769 0.00 0.00 39.03 4.16
102 103 9.771534 TTTTTAACAAAATTCTATCCAAGGTGG 57.228 29.630 0.00 0.00 39.43 4.61
152 153 4.321230 GGGACATGCGTTTCTCTGATTTTT 60.321 41.667 0.00 0.00 0.00 1.94
153 154 3.191371 GGGACATGCGTTTCTCTGATTTT 59.809 43.478 0.00 0.00 0.00 1.82
154 155 2.749621 GGGACATGCGTTTCTCTGATTT 59.250 45.455 0.00 0.00 0.00 2.17
155 156 2.026822 AGGGACATGCGTTTCTCTGATT 60.027 45.455 0.00 0.00 0.00 2.57
156 157 1.556911 AGGGACATGCGTTTCTCTGAT 59.443 47.619 0.00 0.00 0.00 2.90
157 158 0.976641 AGGGACATGCGTTTCTCTGA 59.023 50.000 0.00 0.00 0.00 3.27
158 159 1.813513 AAGGGACATGCGTTTCTCTG 58.186 50.000 0.00 0.00 0.00 3.35
159 160 2.568623 AAAGGGACATGCGTTTCTCT 57.431 45.000 0.00 0.00 0.00 3.10
160 161 4.965119 ATTAAAGGGACATGCGTTTCTC 57.035 40.909 0.00 0.00 0.00 2.87
161 162 7.404671 AATAATTAAAGGGACATGCGTTTCT 57.595 32.000 0.00 0.00 0.00 2.52
162 163 9.744468 ATAAATAATTAAAGGGACATGCGTTTC 57.256 29.630 0.00 0.00 0.00 2.78
196 197 9.548631 AGTGCACATCTATATTTATACCTACCT 57.451 33.333 21.04 0.00 0.00 3.08
220 221 9.978044 TGCGACTACGTATCTATCATATATAGT 57.022 33.333 0.00 0.00 41.98 2.12
223 224 9.106070 TGTTGCGACTACGTATCTATCATATAT 57.894 33.333 5.50 0.00 41.98 0.86
224 225 8.483307 TGTTGCGACTACGTATCTATCATATA 57.517 34.615 5.50 0.00 41.98 0.86
225 226 7.373778 TGTTGCGACTACGTATCTATCATAT 57.626 36.000 5.50 0.00 41.98 1.78
226 227 6.790285 TGTTGCGACTACGTATCTATCATA 57.210 37.500 5.50 0.00 41.98 2.15
227 228 5.684550 TGTTGCGACTACGTATCTATCAT 57.315 39.130 5.50 0.00 41.98 2.45
228 229 5.684550 ATGTTGCGACTACGTATCTATCA 57.315 39.130 5.50 0.00 41.98 2.15
229 230 7.296660 ACTTATGTTGCGACTACGTATCTATC 58.703 38.462 5.50 0.00 41.98 2.08
230 231 7.172875 AGACTTATGTTGCGACTACGTATCTAT 59.827 37.037 5.50 0.00 41.98 1.98
231 232 6.481313 AGACTTATGTTGCGACTACGTATCTA 59.519 38.462 5.50 0.00 41.98 1.98
232 233 5.296283 AGACTTATGTTGCGACTACGTATCT 59.704 40.000 5.50 0.00 41.98 1.98
233 234 5.395778 CAGACTTATGTTGCGACTACGTATC 59.604 44.000 5.50 0.00 41.98 2.24
234 235 5.163683 ACAGACTTATGTTGCGACTACGTAT 60.164 40.000 5.50 0.00 41.98 3.06
235 236 4.154737 ACAGACTTATGTTGCGACTACGTA 59.845 41.667 5.50 0.00 41.98 3.57
236 237 3.057736 ACAGACTTATGTTGCGACTACGT 60.058 43.478 5.50 0.00 41.98 3.57
237 238 3.300853 CACAGACTTATGTTGCGACTACG 59.699 47.826 5.50 0.00 42.93 3.51
238 239 3.612860 CCACAGACTTATGTTGCGACTAC 59.387 47.826 5.50 0.00 0.00 2.73
239 240 3.508402 TCCACAGACTTATGTTGCGACTA 59.492 43.478 5.50 0.00 0.00 2.59
240 241 2.299013 TCCACAGACTTATGTTGCGACT 59.701 45.455 5.50 0.00 0.00 4.18
241 242 2.683968 TCCACAGACTTATGTTGCGAC 58.316 47.619 0.00 0.00 0.00 5.19
242 243 3.006430 TCTTCCACAGACTTATGTTGCGA 59.994 43.478 0.00 0.00 0.00 5.10
243 244 3.325870 TCTTCCACAGACTTATGTTGCG 58.674 45.455 0.00 0.00 0.00 4.85
254 255 7.554959 AAACTATAGAAAGGTCTTCCACAGA 57.445 36.000 6.78 0.00 35.12 3.41
255 256 7.334671 GGAAAACTATAGAAAGGTCTTCCACAG 59.665 40.741 6.78 0.00 35.12 3.66
256 257 7.017254 AGGAAAACTATAGAAAGGTCTTCCACA 59.983 37.037 6.78 0.00 35.12 4.17
257 258 7.395617 AGGAAAACTATAGAAAGGTCTTCCAC 58.604 38.462 6.78 0.00 35.12 4.02
258 259 7.569599 AGGAAAACTATAGAAAGGTCTTCCA 57.430 36.000 6.78 0.00 35.12 3.53
259 260 9.602568 CTAAGGAAAACTATAGAAAGGTCTTCC 57.397 37.037 6.78 7.26 35.12 3.46
260 261 9.602568 CCTAAGGAAAACTATAGAAAGGTCTTC 57.397 37.037 6.78 0.00 35.12 2.87
261 262 9.335211 TCCTAAGGAAAACTATAGAAAGGTCTT 57.665 33.333 6.78 5.69 35.12 3.01
273 274 5.368816 GGCCCTAAGATCCTAAGGAAAACTA 59.631 44.000 7.08 0.00 34.34 2.24
274 275 4.166337 GGCCCTAAGATCCTAAGGAAAACT 59.834 45.833 7.08 0.00 34.34 2.66
275 276 4.462133 GGCCCTAAGATCCTAAGGAAAAC 58.538 47.826 7.08 0.00 34.34 2.43
370 371 5.115480 GTTCAATTTCAAGGGCTCAAAACA 58.885 37.500 0.00 0.00 0.00 2.83
393 402 2.422597 TCATGGGCTCAAGTTTACACG 58.577 47.619 0.00 0.00 0.00 4.49
424 433 0.740737 CGGAATGAGATGGGCCAAAC 59.259 55.000 11.89 8.29 0.00 2.93
457 466 2.285220 CGCCTAGACACATTCATTTCGG 59.715 50.000 0.00 0.00 0.00 4.30
459 468 6.604735 AATACGCCTAGACACATTCATTTC 57.395 37.500 0.00 0.00 0.00 2.17
470 479 3.166489 AGCACTGAAATACGCCTAGAC 57.834 47.619 0.00 0.00 0.00 2.59
476 485 7.478667 GCATATGTATTTAGCACTGAAATACGC 59.521 37.037 4.29 6.83 46.12 4.42
488 497 7.117241 TGTCGCTTAAGCATATGTATTTAGC 57.883 36.000 26.29 16.95 42.21 3.09
492 501 8.657074 TTAGTTGTCGCTTAAGCATATGTATT 57.343 30.769 26.29 7.72 42.21 1.89
499 508 5.470098 CCCATATTAGTTGTCGCTTAAGCAT 59.530 40.000 26.29 12.22 42.21 3.79
500 509 4.814234 CCCATATTAGTTGTCGCTTAAGCA 59.186 41.667 26.29 11.38 42.21 3.91
502 511 5.175126 CGTCCCATATTAGTTGTCGCTTAAG 59.825 44.000 0.00 0.00 0.00 1.85
505 514 3.454375 CGTCCCATATTAGTTGTCGCTT 58.546 45.455 0.00 0.00 0.00 4.68
525 534 8.788806 AGACAGAATAATCTTGTACTATCTCCG 58.211 37.037 0.00 0.00 32.03 4.63
572 581 5.499139 TGATAGATTGGATGTTTTTCCGC 57.501 39.130 0.00 0.00 38.74 5.54
573 582 7.502120 AGATGATAGATTGGATGTTTTTCCG 57.498 36.000 0.00 0.00 38.74 4.30
629 639 8.844244 GCATAAGATAAAGTGAAGATGGACAAT 58.156 33.333 0.00 0.00 0.00 2.71
680 690 7.328737 AGGTGTACTAGAAACATAACATCCAC 58.671 38.462 0.00 0.00 0.00 4.02
708 718 9.979578 TGCTTTTATTTCTTCATAATGTTGTGT 57.020 25.926 0.00 0.00 0.00 3.72
737 747 9.889128 GTGGTTGTGGTTTATAAGTAGGTTATA 57.111 33.333 0.00 0.00 33.16 0.98
738 748 8.384718 TGTGGTTGTGGTTTATAAGTAGGTTAT 58.615 33.333 0.00 0.00 35.40 1.89
739 749 7.743749 TGTGGTTGTGGTTTATAAGTAGGTTA 58.256 34.615 0.00 0.00 0.00 2.85
777 787 1.263217 GCACACCGGAAAGTTGTACTG 59.737 52.381 9.46 0.00 0.00 2.74
849 859 1.379176 CAACCACCACACCACACCA 60.379 57.895 0.00 0.00 0.00 4.17
850 860 2.124693 CCAACCACCACACCACACC 61.125 63.158 0.00 0.00 0.00 4.16
851 861 1.379309 ACCAACCACCACACCACAC 60.379 57.895 0.00 0.00 0.00 3.82
852 862 1.379176 CACCAACCACCACACCACA 60.379 57.895 0.00 0.00 0.00 4.17
853 863 1.077357 TCACCAACCACCACACCAC 60.077 57.895 0.00 0.00 0.00 4.16
1256 1293 2.685380 CCTTGCCCTCCTCCGTCT 60.685 66.667 0.00 0.00 0.00 4.18
1308 1345 0.949105 CGGTGAGGTACTTGCACACC 60.949 60.000 9.71 9.71 41.55 4.16
1359 1396 2.109126 GTCCTGGTTCATGAGCGCC 61.109 63.158 2.29 4.96 0.00 6.53
1434 1482 2.985896 TGCTACTACATGAGGGCAAAC 58.014 47.619 0.00 0.00 35.86 2.93
1442 1490 3.916035 ACAGGGAGATGCTACTACATGA 58.084 45.455 12.77 0.00 36.23 3.07
1443 1491 4.375272 CAACAGGGAGATGCTACTACATG 58.625 47.826 6.17 6.17 38.32 3.21
1444 1492 3.181461 GCAACAGGGAGATGCTACTACAT 60.181 47.826 0.00 0.00 42.23 2.29
1493 3005 2.627221 TCACCCACACATTTGGAACATG 59.373 45.455 0.00 0.00 39.24 3.21
1642 3539 2.742589 GTTCTTCATCCCCTCGTTGAAC 59.257 50.000 0.00 0.00 0.00 3.18
1947 3844 1.905922 GCAGTTCTTGAGCAGCGTCC 61.906 60.000 0.00 0.00 0.00 4.79
2029 3926 3.195698 GCCTTAGGCGTGGCTTCG 61.196 66.667 7.77 0.00 45.26 3.79
2153 4050 5.394224 CGTAGATGTAAGTGGTCTTCATGGT 60.394 44.000 0.00 0.00 35.36 3.55
2213 4110 0.391263 GGGAGGACGTTGTCATGGAC 60.391 60.000 0.00 0.00 33.68 4.02
2229 4126 6.040054 CAGTTGAATTAATGCATCAGATGGGA 59.960 38.462 12.54 0.00 0.00 4.37
2244 4143 7.661437 AGAGAAAGTACACATGCAGTTGAATTA 59.339 33.333 4.40 0.00 0.00 1.40
2245 4144 6.488006 AGAGAAAGTACACATGCAGTTGAATT 59.512 34.615 4.40 0.00 0.00 2.17
2246 4145 6.000219 AGAGAAAGTACACATGCAGTTGAAT 59.000 36.000 4.40 0.00 0.00 2.57
2247 4146 5.368145 AGAGAAAGTACACATGCAGTTGAA 58.632 37.500 4.40 0.00 0.00 2.69
2248 4147 4.960938 AGAGAAAGTACACATGCAGTTGA 58.039 39.130 4.40 0.00 0.00 3.18
2251 4150 4.067896 CCAAGAGAAAGTACACATGCAGT 58.932 43.478 0.00 0.00 0.00 4.40
2274 4173 8.576442 TCAGAGAATGACAAAATTAAGGGAAAC 58.424 33.333 0.00 0.00 31.12 2.78
2278 4177 8.742777 TGATTCAGAGAATGACAAAATTAAGGG 58.257 33.333 0.00 0.00 37.77 3.95
2373 4311 8.234546 GTGGAGTTTAATACACACAACCATTAG 58.765 37.037 0.00 0.00 37.07 1.73
2394 4332 5.337578 TTTTTCTTCAACAAAGGGTGGAG 57.662 39.130 0.00 0.00 35.54 3.86
2401 4339 7.095271 ACACACAACCATTTTTCTTCAACAAAG 60.095 33.333 0.00 0.00 36.22 2.77
2435 4574 9.514093 AGTAGGGATGACTCTAGATATAGATCA 57.486 37.037 0.00 5.04 34.17 2.92
2496 4639 8.874156 TGAGCCTTATCTCACTCATAATGTTAT 58.126 33.333 0.00 0.00 38.11 1.89
2497 4640 8.250143 TGAGCCTTATCTCACTCATAATGTTA 57.750 34.615 0.00 0.00 38.11 2.41
2498 4641 7.129457 TGAGCCTTATCTCACTCATAATGTT 57.871 36.000 0.00 0.00 38.11 2.71
2499 4642 6.737720 TGAGCCTTATCTCACTCATAATGT 57.262 37.500 0.00 0.00 38.11 2.71
2500 4643 7.613585 AGATGAGCCTTATCTCACTCATAATG 58.386 38.462 4.46 0.00 46.95 1.90
2552 4695 3.255642 GCATGGTTGAATGGTGTAGTTGT 59.744 43.478 0.00 0.00 0.00 3.32
2729 4872 2.030007 CCCACGTGTTGATGCAAGAATT 60.030 45.455 15.65 0.00 0.00 2.17
2730 4873 1.541147 CCCACGTGTTGATGCAAGAAT 59.459 47.619 15.65 0.00 0.00 2.40
2731 4874 0.950836 CCCACGTGTTGATGCAAGAA 59.049 50.000 15.65 0.00 0.00 2.52
2732 4875 0.888736 CCCCACGTGTTGATGCAAGA 60.889 55.000 15.65 0.00 0.00 3.02
2733 4876 1.172180 ACCCCACGTGTTGATGCAAG 61.172 55.000 15.65 0.00 0.00 4.01
2734 4877 0.108774 TACCCCACGTGTTGATGCAA 59.891 50.000 15.65 0.00 0.00 4.08
2735 4878 0.326595 ATACCCCACGTGTTGATGCA 59.673 50.000 15.65 0.00 0.00 3.96
2736 4879 1.014352 GATACCCCACGTGTTGATGC 58.986 55.000 15.65 0.00 0.00 3.91
2737 4880 1.209504 AGGATACCCCACGTGTTGATG 59.790 52.381 15.65 0.00 37.41 3.07
2738 4881 1.580059 AGGATACCCCACGTGTTGAT 58.420 50.000 15.65 1.93 37.41 2.57
2739 4882 1.826720 GTAGGATACCCCACGTGTTGA 59.173 52.381 15.65 0.00 34.89 3.18
2740 4883 1.551430 TGTAGGATACCCCACGTGTTG 59.449 52.381 15.65 7.42 42.12 3.33
2741 4884 1.829222 CTGTAGGATACCCCACGTGTT 59.171 52.381 15.65 0.52 42.12 3.32
2742 4885 1.272872 ACTGTAGGATACCCCACGTGT 60.273 52.381 15.65 0.00 42.12 4.49
2743 4886 1.481871 ACTGTAGGATACCCCACGTG 58.518 55.000 9.08 9.08 42.12 4.49
2744 4887 2.242882 AACTGTAGGATACCCCACGT 57.757 50.000 0.00 0.00 42.12 4.49
2745 4888 6.888632 AGTATATAACTGTAGGATACCCCACG 59.111 42.308 0.00 0.00 42.12 4.94
2746 4889 9.933240 ATAGTATATAACTGTAGGATACCCCAC 57.067 37.037 0.00 0.00 42.12 4.61
2778 4921 8.991783 AGGAGTGAAATCATGTCATCATTTAT 57.008 30.769 0.00 0.00 31.15 1.40
2779 4922 8.812513 AAGGAGTGAAATCATGTCATCATTTA 57.187 30.769 0.00 0.00 31.15 1.40
2780 4923 7.713734 AAGGAGTGAAATCATGTCATCATTT 57.286 32.000 0.00 0.00 31.15 2.32
2781 4924 7.713734 AAAGGAGTGAAATCATGTCATCATT 57.286 32.000 0.00 0.00 31.15 2.57
2782 4925 8.991783 ATAAAGGAGTGAAATCATGTCATCAT 57.008 30.769 0.00 0.00 34.21 2.45
2783 4926 8.680001 CAATAAAGGAGTGAAATCATGTCATCA 58.320 33.333 0.00 0.00 0.00 3.07
2784 4927 8.896744 TCAATAAAGGAGTGAAATCATGTCATC 58.103 33.333 0.00 0.00 0.00 2.92
2785 4928 8.812513 TCAATAAAGGAGTGAAATCATGTCAT 57.187 30.769 0.00 0.00 0.00 3.06
2786 4929 7.884877 ACTCAATAAAGGAGTGAAATCATGTCA 59.115 33.333 0.00 0.00 43.65 3.58
2787 4930 8.273780 ACTCAATAAAGGAGTGAAATCATGTC 57.726 34.615 0.00 0.00 43.65 3.06
2788 4931 9.911788 ATACTCAATAAAGGAGTGAAATCATGT 57.088 29.630 5.38 0.00 44.86 3.21
2852 4995 9.086758 AGACAATTTTTCCAGAGAAAGATCAAT 57.913 29.630 0.00 0.00 42.78 2.57
2853 4996 8.469309 AGACAATTTTTCCAGAGAAAGATCAA 57.531 30.769 0.00 0.00 42.78 2.57
2854 4997 9.745018 ATAGACAATTTTTCCAGAGAAAGATCA 57.255 29.630 0.00 0.00 42.78 2.92
2856 4999 9.745018 TCATAGACAATTTTTCCAGAGAAAGAT 57.255 29.630 0.00 0.00 42.78 2.40
2857 5000 9.573166 TTCATAGACAATTTTTCCAGAGAAAGA 57.427 29.630 0.00 0.00 42.78 2.52
2860 5003 9.300681 ACATTCATAGACAATTTTTCCAGAGAA 57.699 29.630 0.00 0.00 0.00 2.87
2861 5004 8.868522 ACATTCATAGACAATTTTTCCAGAGA 57.131 30.769 0.00 0.00 0.00 3.10
2887 5030 8.770322 AGGCATCAGATCTATCTAAGCAATAAT 58.230 33.333 0.00 0.00 34.85 1.28
2888 5031 8.143673 AGGCATCAGATCTATCTAAGCAATAA 57.856 34.615 0.00 0.00 34.85 1.40
2889 5032 7.730672 AGGCATCAGATCTATCTAAGCAATA 57.269 36.000 0.00 0.00 34.85 1.90
2890 5033 6.623979 AGGCATCAGATCTATCTAAGCAAT 57.376 37.500 0.00 0.41 34.85 3.56
2891 5034 6.183361 ACAAGGCATCAGATCTATCTAAGCAA 60.183 38.462 0.00 0.00 34.85 3.91
2892 5035 5.306419 ACAAGGCATCAGATCTATCTAAGCA 59.694 40.000 0.00 0.00 34.85 3.91
2893 5036 5.792741 ACAAGGCATCAGATCTATCTAAGC 58.207 41.667 0.00 0.00 34.85 3.09
2894 5037 7.816995 GGTTACAAGGCATCAGATCTATCTAAG 59.183 40.741 0.00 0.00 34.85 2.18
2895 5038 7.290014 TGGTTACAAGGCATCAGATCTATCTAA 59.710 37.037 0.00 0.00 34.85 2.10
2896 5039 6.782494 TGGTTACAAGGCATCAGATCTATCTA 59.218 38.462 0.00 0.00 34.85 1.98
2897 5040 5.604231 TGGTTACAAGGCATCAGATCTATCT 59.396 40.000 0.00 0.00 37.72 1.98
2898 5041 5.858381 TGGTTACAAGGCATCAGATCTATC 58.142 41.667 0.00 0.00 0.00 2.08
2899 5042 5.894298 TGGTTACAAGGCATCAGATCTAT 57.106 39.130 0.00 0.00 0.00 1.98
2900 5043 5.366477 TCATGGTTACAAGGCATCAGATCTA 59.634 40.000 0.00 0.00 0.00 1.98
2901 5044 4.164796 TCATGGTTACAAGGCATCAGATCT 59.835 41.667 0.00 0.00 0.00 2.75
2902 5045 4.454678 TCATGGTTACAAGGCATCAGATC 58.545 43.478 0.00 0.00 0.00 2.75
2903 5046 4.458397 CTCATGGTTACAAGGCATCAGAT 58.542 43.478 0.00 0.00 0.00 2.90
2904 5047 3.370846 CCTCATGGTTACAAGGCATCAGA 60.371 47.826 0.00 0.00 0.00 3.27
2905 5048 2.947652 CCTCATGGTTACAAGGCATCAG 59.052 50.000 0.00 0.00 0.00 2.90
2906 5049 2.308570 ACCTCATGGTTACAAGGCATCA 59.691 45.455 0.00 0.00 46.05 3.07
2907 5050 3.004752 ACCTCATGGTTACAAGGCATC 57.995 47.619 0.00 0.00 46.05 3.91
2919 5062 0.948623 TTGAACGCGTGACCTCATGG 60.949 55.000 14.98 0.00 39.83 3.66
2920 5063 0.439985 CTTGAACGCGTGACCTCATG 59.560 55.000 14.98 11.29 36.01 3.07
2921 5064 0.033504 ACTTGAACGCGTGACCTCAT 59.966 50.000 14.98 0.00 0.00 2.90
2922 5065 0.596600 GACTTGAACGCGTGACCTCA 60.597 55.000 14.98 10.40 0.00 3.86
2923 5066 1.282930 GGACTTGAACGCGTGACCTC 61.283 60.000 14.98 7.20 0.00 3.85
2924 5067 1.300697 GGACTTGAACGCGTGACCT 60.301 57.895 14.98 0.00 0.00 3.85
2925 5068 0.038892 TAGGACTTGAACGCGTGACC 60.039 55.000 14.98 10.32 0.00 4.02
2926 5069 1.774639 TTAGGACTTGAACGCGTGAC 58.225 50.000 14.98 11.43 0.00 3.67
2927 5070 2.512485 TTTAGGACTTGAACGCGTGA 57.488 45.000 14.98 0.00 0.00 4.35
2928 5071 3.242478 TGTTTTTAGGACTTGAACGCGTG 60.242 43.478 14.98 1.65 0.00 5.34
2929 5072 2.937799 TGTTTTTAGGACTTGAACGCGT 59.062 40.909 5.58 5.58 0.00 6.01
2930 5073 3.541711 CTGTTTTTAGGACTTGAACGCG 58.458 45.455 3.53 3.53 0.00 6.01
2931 5074 3.297472 GCTGTTTTTAGGACTTGAACGC 58.703 45.455 0.00 0.00 0.00 4.84
2932 5075 3.564225 AGGCTGTTTTTAGGACTTGAACG 59.436 43.478 0.00 0.00 0.00 3.95
2933 5076 4.822350 AGAGGCTGTTTTTAGGACTTGAAC 59.178 41.667 0.00 0.00 0.00 3.18
2934 5077 5.048846 AGAGGCTGTTTTTAGGACTTGAA 57.951 39.130 0.00 0.00 0.00 2.69
2935 5078 4.706842 AGAGGCTGTTTTTAGGACTTGA 57.293 40.909 0.00 0.00 0.00 3.02
2936 5079 5.763204 TGTAAGAGGCTGTTTTTAGGACTTG 59.237 40.000 0.90 0.00 0.00 3.16
2937 5080 5.937111 TGTAAGAGGCTGTTTTTAGGACTT 58.063 37.500 0.90 0.00 0.00 3.01
2938 5081 5.307196 TCTGTAAGAGGCTGTTTTTAGGACT 59.693 40.000 0.90 0.00 38.67 3.85
2939 5082 5.548406 TCTGTAAGAGGCTGTTTTTAGGAC 58.452 41.667 0.90 0.00 38.67 3.85
2940 5083 5.818678 TCTGTAAGAGGCTGTTTTTAGGA 57.181 39.130 0.90 0.00 38.67 2.94
2954 5097 7.040686 GCAACTTTTCCCTACATTTCTGTAAGA 60.041 37.037 0.00 0.00 44.68 2.10
2955 5098 7.084486 GCAACTTTTCCCTACATTTCTGTAAG 58.916 38.462 0.00 0.00 37.41 2.34
2956 5099 6.547880 TGCAACTTTTCCCTACATTTCTGTAA 59.452 34.615 0.00 0.00 37.41 2.41
2957 5100 6.065374 TGCAACTTTTCCCTACATTTCTGTA 58.935 36.000 0.00 0.00 36.79 2.74
2958 5101 4.892934 TGCAACTTTTCCCTACATTTCTGT 59.107 37.500 0.00 0.00 39.49 3.41
2959 5102 5.452078 TGCAACTTTTCCCTACATTTCTG 57.548 39.130 0.00 0.00 0.00 3.02
2960 5103 7.961326 ATATGCAACTTTTCCCTACATTTCT 57.039 32.000 0.00 0.00 0.00 2.52
2965 5108 9.555727 GTCTATTATATGCAACTTTTCCCTACA 57.444 33.333 0.00 0.00 0.00 2.74
2966 5109 9.000486 GGTCTATTATATGCAACTTTTCCCTAC 58.000 37.037 0.00 0.00 0.00 3.18
2967 5110 7.876068 CGGTCTATTATATGCAACTTTTCCCTA 59.124 37.037 0.00 0.00 0.00 3.53
2968 5111 6.710744 CGGTCTATTATATGCAACTTTTCCCT 59.289 38.462 0.00 0.00 0.00 4.20
2969 5112 6.708949 TCGGTCTATTATATGCAACTTTTCCC 59.291 38.462 0.00 0.00 0.00 3.97
2970 5113 7.724305 TCGGTCTATTATATGCAACTTTTCC 57.276 36.000 0.00 0.00 0.00 3.13
2971 5114 9.651718 CTTTCGGTCTATTATATGCAACTTTTC 57.348 33.333 0.00 0.00 0.00 2.29
2972 5115 9.174166 ACTTTCGGTCTATTATATGCAACTTTT 57.826 29.630 0.00 0.00 0.00 2.27
2973 5116 8.612619 CACTTTCGGTCTATTATATGCAACTTT 58.387 33.333 0.00 0.00 0.00 2.66
2974 5117 7.985184 TCACTTTCGGTCTATTATATGCAACTT 59.015 33.333 0.00 0.00 0.00 2.66
2975 5118 7.497595 TCACTTTCGGTCTATTATATGCAACT 58.502 34.615 0.00 0.00 0.00 3.16
2976 5119 7.709269 TCACTTTCGGTCTATTATATGCAAC 57.291 36.000 0.00 0.00 0.00 4.17
2977 5120 7.328493 CGATCACTTTCGGTCTATTATATGCAA 59.672 37.037 0.00 0.00 35.50 4.08
2978 5121 6.806739 CGATCACTTTCGGTCTATTATATGCA 59.193 38.462 0.00 0.00 35.50 3.96
2979 5122 7.027760 TCGATCACTTTCGGTCTATTATATGC 58.972 38.462 0.00 0.00 39.56 3.14
2980 5123 8.851416 GTTCGATCACTTTCGGTCTATTATATG 58.149 37.037 0.00 0.00 39.56 1.78
2981 5124 8.027771 GGTTCGATCACTTTCGGTCTATTATAT 58.972 37.037 0.00 0.00 39.56 0.86
2982 5125 7.365741 GGTTCGATCACTTTCGGTCTATTATA 58.634 38.462 0.00 0.00 39.56 0.98
2983 5126 6.214399 GGTTCGATCACTTTCGGTCTATTAT 58.786 40.000 0.00 0.00 39.56 1.28
2984 5127 5.450965 GGGTTCGATCACTTTCGGTCTATTA 60.451 44.000 0.00 0.00 39.56 0.98
2985 5128 4.430908 GGTTCGATCACTTTCGGTCTATT 58.569 43.478 0.00 0.00 39.56 1.73
2986 5129 3.181478 GGGTTCGATCACTTTCGGTCTAT 60.181 47.826 0.00 0.00 39.56 1.98
2987 5130 2.165030 GGGTTCGATCACTTTCGGTCTA 59.835 50.000 0.00 0.00 39.56 2.59
2988 5131 1.067071 GGGTTCGATCACTTTCGGTCT 60.067 52.381 0.00 0.00 39.56 3.85
2989 5132 1.067071 AGGGTTCGATCACTTTCGGTC 60.067 52.381 0.00 0.00 39.56 4.79
2990 5133 0.974383 AGGGTTCGATCACTTTCGGT 59.026 50.000 0.00 0.00 39.56 4.69
2991 5134 1.359848 CAGGGTTCGATCACTTTCGG 58.640 55.000 0.00 0.00 39.56 4.30
2992 5135 0.721718 GCAGGGTTCGATCACTTTCG 59.278 55.000 0.00 0.00 40.46 3.46
2993 5136 0.721718 CGCAGGGTTCGATCACTTTC 59.278 55.000 0.00 0.00 0.00 2.62
2994 5137 1.298859 GCGCAGGGTTCGATCACTTT 61.299 55.000 0.30 0.00 0.00 2.66
2995 5138 1.741770 GCGCAGGGTTCGATCACTT 60.742 57.895 0.30 0.00 0.00 3.16
2996 5139 2.125512 GCGCAGGGTTCGATCACT 60.126 61.111 0.30 0.00 0.00 3.41
2997 5140 1.970917 CTTGCGCAGGGTTCGATCAC 61.971 60.000 12.39 0.00 0.00 3.06
2998 5141 1.741401 CTTGCGCAGGGTTCGATCA 60.741 57.895 12.39 0.00 0.00 2.92
2999 5142 2.464459 CCTTGCGCAGGGTTCGATC 61.464 63.158 29.11 0.00 39.39 3.69
3000 5143 2.436646 CCTTGCGCAGGGTTCGAT 60.437 61.111 29.11 0.00 39.39 3.59
3007 5150 2.512515 GTAGCTCCCTTGCGCAGG 60.513 66.667 13.36 13.36 43.49 4.85
3008 5151 1.364626 CTTGTAGCTCCCTTGCGCAG 61.365 60.000 11.31 4.92 38.13 5.18
3009 5152 1.375908 CTTGTAGCTCCCTTGCGCA 60.376 57.895 5.66 5.66 38.13 6.09
3010 5153 2.754995 GCTTGTAGCTCCCTTGCGC 61.755 63.158 0.00 0.00 38.45 6.09
3011 5154 1.375908 TGCTTGTAGCTCCCTTGCG 60.376 57.895 0.00 0.00 42.97 4.85
3012 5155 0.322008 AGTGCTTGTAGCTCCCTTGC 60.322 55.000 0.00 0.00 42.97 4.01
3013 5156 3.265791 CTTAGTGCTTGTAGCTCCCTTG 58.734 50.000 0.00 0.00 42.97 3.61
3014 5157 2.355209 GCTTAGTGCTTGTAGCTCCCTT 60.355 50.000 0.00 0.00 42.97 3.95
3015 5158 1.208293 GCTTAGTGCTTGTAGCTCCCT 59.792 52.381 0.00 0.00 42.97 4.20
3016 5159 1.657822 GCTTAGTGCTTGTAGCTCCC 58.342 55.000 0.00 0.00 42.97 4.30
3053 5196 9.429109 TGCCGGTATTAATATATTATCTGAGGA 57.571 33.333 1.90 0.00 0.00 3.71
3064 5207 9.221933 CCACTTAACAATGCCGGTATTAATATA 57.778 33.333 17.93 6.01 0.00 0.86
3065 5208 7.940137 TCCACTTAACAATGCCGGTATTAATAT 59.060 33.333 17.93 6.93 0.00 1.28
3066 5209 7.281098 TCCACTTAACAATGCCGGTATTAATA 58.719 34.615 17.93 10.72 0.00 0.98
3067 5210 6.123651 TCCACTTAACAATGCCGGTATTAAT 58.876 36.000 17.93 11.69 0.00 1.40
3068 5211 5.498393 TCCACTTAACAATGCCGGTATTAA 58.502 37.500 17.93 8.02 0.00 1.40
3069 5212 5.100344 TCCACTTAACAATGCCGGTATTA 57.900 39.130 17.93 0.00 0.00 0.98
3070 5213 3.958018 TCCACTTAACAATGCCGGTATT 58.042 40.909 12.49 12.49 0.00 1.89
3071 5214 3.637911 TCCACTTAACAATGCCGGTAT 57.362 42.857 1.90 0.00 0.00 2.73
3072 5215 3.275143 CATCCACTTAACAATGCCGGTA 58.725 45.455 1.90 0.00 0.00 4.02
3073 5216 2.091541 CATCCACTTAACAATGCCGGT 58.908 47.619 1.90 0.00 0.00 5.28
3074 5217 1.202290 GCATCCACTTAACAATGCCGG 60.202 52.381 0.00 0.00 38.82 6.13
3075 5218 1.472082 TGCATCCACTTAACAATGCCG 59.528 47.619 3.96 0.00 42.98 5.69
3076 5219 2.417243 GGTGCATCCACTTAACAATGCC 60.417 50.000 0.00 0.00 42.98 4.40
3077 5220 2.417243 GGGTGCATCCACTTAACAATGC 60.417 50.000 12.38 0.00 43.71 3.56
3078 5221 2.824936 TGGGTGCATCCACTTAACAATG 59.175 45.455 16.81 0.00 41.75 2.82
3079 5222 3.168035 TGGGTGCATCCACTTAACAAT 57.832 42.857 16.81 0.00 41.75 2.71
3080 5223 2.666272 TGGGTGCATCCACTTAACAA 57.334 45.000 16.81 0.00 41.75 2.83
3081 5224 2.513753 CTTGGGTGCATCCACTTAACA 58.486 47.619 21.13 1.00 41.75 2.41
3082 5225 1.202348 GCTTGGGTGCATCCACTTAAC 59.798 52.381 21.13 2.40 41.75 2.01
3083 5226 1.075374 AGCTTGGGTGCATCCACTTAA 59.925 47.619 21.13 2.36 41.75 1.85
3084 5227 0.698238 AGCTTGGGTGCATCCACTTA 59.302 50.000 21.13 2.81 41.75 2.24
3085 5228 0.178953 AAGCTTGGGTGCATCCACTT 60.179 50.000 21.13 17.20 41.75 3.16
3086 5229 0.610232 GAAGCTTGGGTGCATCCACT 60.610 55.000 21.13 11.23 41.75 4.00
3087 5230 0.610232 AGAAGCTTGGGTGCATCCAC 60.610 55.000 21.13 8.60 41.32 4.02
3088 5231 0.609957 CAGAAGCTTGGGTGCATCCA 60.610 55.000 16.81 16.81 38.11 3.41
3089 5232 1.318158 CCAGAAGCTTGGGTGCATCC 61.318 60.000 9.82 9.82 34.46 3.51
3090 5233 1.941999 GCCAGAAGCTTGGGTGCATC 61.942 60.000 2.10 0.00 38.72 3.91
3091 5234 1.980772 GCCAGAAGCTTGGGTGCAT 60.981 57.895 2.10 0.00 38.72 3.96
3092 5235 2.598394 GCCAGAAGCTTGGGTGCA 60.598 61.111 2.10 0.00 38.72 4.57
3101 5244 1.922570 CAATGATTGCAGCCAGAAGC 58.077 50.000 0.00 0.00 44.25 3.86
3112 5255 7.522901 TTCGTTCCATTATTTGCAATGATTG 57.477 32.000 0.00 0.00 38.01 2.67
3113 5256 8.034215 TCTTTCGTTCCATTATTTGCAATGATT 58.966 29.630 0.00 0.00 38.01 2.57
3114 5257 7.546358 TCTTTCGTTCCATTATTTGCAATGAT 58.454 30.769 0.00 0.00 38.01 2.45
3115 5258 6.918626 TCTTTCGTTCCATTATTTGCAATGA 58.081 32.000 0.00 0.00 38.01 2.57
3116 5259 7.329226 AGTTCTTTCGTTCCATTATTTGCAATG 59.671 33.333 0.00 0.00 35.97 2.82
3117 5260 7.378181 AGTTCTTTCGTTCCATTATTTGCAAT 58.622 30.769 0.00 0.00 0.00 3.56
3118 5261 6.744112 AGTTCTTTCGTTCCATTATTTGCAA 58.256 32.000 0.00 0.00 0.00 4.08
3119 5262 6.325919 AGTTCTTTCGTTCCATTATTTGCA 57.674 33.333 0.00 0.00 0.00 4.08
3120 5263 5.800438 GGAGTTCTTTCGTTCCATTATTTGC 59.200 40.000 0.00 0.00 0.00 3.68
3121 5264 7.145932 AGGAGTTCTTTCGTTCCATTATTTG 57.854 36.000 0.00 0.00 32.02 2.32
3122 5265 7.881232 TGTAGGAGTTCTTTCGTTCCATTATTT 59.119 33.333 0.00 0.00 32.02 1.40
3123 5266 7.391620 TGTAGGAGTTCTTTCGTTCCATTATT 58.608 34.615 0.00 0.00 32.02 1.40
3124 5267 6.942976 TGTAGGAGTTCTTTCGTTCCATTAT 58.057 36.000 0.00 0.00 32.02 1.28
3125 5268 6.349243 TGTAGGAGTTCTTTCGTTCCATTA 57.651 37.500 0.00 0.00 32.02 1.90
3126 5269 5.223449 TGTAGGAGTTCTTTCGTTCCATT 57.777 39.130 0.00 0.00 32.02 3.16
3127 5270 4.884668 TGTAGGAGTTCTTTCGTTCCAT 57.115 40.909 0.00 0.00 32.02 3.41
3128 5271 4.884668 ATGTAGGAGTTCTTTCGTTCCA 57.115 40.909 0.00 0.00 32.02 3.53
3129 5272 5.235516 TGAATGTAGGAGTTCTTTCGTTCC 58.764 41.667 6.07 0.00 0.00 3.62
3130 5273 6.645415 TCTTGAATGTAGGAGTTCTTTCGTTC 59.355 38.462 0.00 0.00 0.00 3.95
3131 5274 6.522054 TCTTGAATGTAGGAGTTCTTTCGTT 58.478 36.000 0.00 0.00 0.00 3.85
3132 5275 6.097915 TCTTGAATGTAGGAGTTCTTTCGT 57.902 37.500 0.00 0.00 0.00 3.85
3133 5276 6.036517 CCATCTTGAATGTAGGAGTTCTTTCG 59.963 42.308 0.00 0.00 0.00 3.46
3134 5277 7.106239 TCCATCTTGAATGTAGGAGTTCTTTC 58.894 38.462 0.00 0.00 0.00 2.62
3135 5278 7.020827 TCCATCTTGAATGTAGGAGTTCTTT 57.979 36.000 0.00 0.00 0.00 2.52
3136 5279 6.627087 TCCATCTTGAATGTAGGAGTTCTT 57.373 37.500 0.00 0.00 0.00 2.52
3137 5280 5.396213 GCTCCATCTTGAATGTAGGAGTTCT 60.396 44.000 0.00 0.00 43.47 3.01
3138 5281 4.813697 GCTCCATCTTGAATGTAGGAGTTC 59.186 45.833 0.00 0.00 43.47 3.01
3139 5282 4.225942 TGCTCCATCTTGAATGTAGGAGTT 59.774 41.667 0.00 0.00 43.47 3.01
3140 5283 3.776969 TGCTCCATCTTGAATGTAGGAGT 59.223 43.478 0.00 0.00 43.47 3.85
3141 5284 4.125703 GTGCTCCATCTTGAATGTAGGAG 58.874 47.826 0.00 0.00 44.19 3.69
3142 5285 3.118261 GGTGCTCCATCTTGAATGTAGGA 60.118 47.826 0.00 0.00 0.00 2.94
3143 5286 3.209410 GGTGCTCCATCTTGAATGTAGG 58.791 50.000 0.00 0.00 0.00 3.18
3144 5287 2.868583 CGGTGCTCCATCTTGAATGTAG 59.131 50.000 5.52 0.00 0.00 2.74
3145 5288 2.499693 TCGGTGCTCCATCTTGAATGTA 59.500 45.455 5.52 0.00 0.00 2.29
3146 5289 1.278985 TCGGTGCTCCATCTTGAATGT 59.721 47.619 5.52 0.00 0.00 2.71
3147 5290 1.938577 CTCGGTGCTCCATCTTGAATG 59.061 52.381 5.52 0.00 0.00 2.67
3148 5291 1.556911 ACTCGGTGCTCCATCTTGAAT 59.443 47.619 5.52 0.00 0.00 2.57
3149 5292 0.976641 ACTCGGTGCTCCATCTTGAA 59.023 50.000 5.52 0.00 0.00 2.69
3150 5293 0.976641 AACTCGGTGCTCCATCTTGA 59.023 50.000 5.52 0.00 0.00 3.02
3151 5294 2.271800 GTAACTCGGTGCTCCATCTTG 58.728 52.381 5.52 0.00 0.00 3.02
3152 5295 1.207329 GGTAACTCGGTGCTCCATCTT 59.793 52.381 5.52 0.00 0.00 2.40
3153 5296 0.824759 GGTAACTCGGTGCTCCATCT 59.175 55.000 5.52 0.00 0.00 2.90
3154 5297 0.535335 TGGTAACTCGGTGCTCCATC 59.465 55.000 5.52 0.00 37.61 3.51
3155 5298 1.204146 ATGGTAACTCGGTGCTCCAT 58.796 50.000 5.52 0.00 37.61 3.41
3156 5299 0.981183 AATGGTAACTCGGTGCTCCA 59.019 50.000 5.52 0.00 37.61 3.86
3157 5300 1.207329 AGAATGGTAACTCGGTGCTCC 59.793 52.381 0.00 0.00 37.61 4.70
3158 5301 2.271800 CAGAATGGTAACTCGGTGCTC 58.728 52.381 0.00 0.00 37.61 4.26
3159 5302 2.386661 CAGAATGGTAACTCGGTGCT 57.613 50.000 0.00 0.00 37.61 4.40
3172 5315 9.865321 AGTGTTTTGATAATGAAATCCAGAATG 57.135 29.630 0.00 0.00 0.00 2.67
3173 5316 9.865321 CAGTGTTTTGATAATGAAATCCAGAAT 57.135 29.630 0.00 0.00 0.00 2.40
3174 5317 8.306038 CCAGTGTTTTGATAATGAAATCCAGAA 58.694 33.333 0.00 0.00 0.00 3.02
3175 5318 7.669304 TCCAGTGTTTTGATAATGAAATCCAGA 59.331 33.333 0.00 0.00 0.00 3.86
3176 5319 7.829725 TCCAGTGTTTTGATAATGAAATCCAG 58.170 34.615 0.00 0.00 0.00 3.86
3177 5320 7.773489 TCCAGTGTTTTGATAATGAAATCCA 57.227 32.000 0.00 0.00 0.00 3.41
3178 5321 8.689972 AGATCCAGTGTTTTGATAATGAAATCC 58.310 33.333 0.00 0.00 0.00 3.01
3181 5324 8.522830 GGAAGATCCAGTGTTTTGATAATGAAA 58.477 33.333 0.00 0.00 36.28 2.69
3182 5325 7.669304 TGGAAGATCCAGTGTTTTGATAATGAA 59.331 33.333 0.00 0.00 42.67 2.57
3183 5326 7.174413 TGGAAGATCCAGTGTTTTGATAATGA 58.826 34.615 0.00 0.00 42.67 2.57
3184 5327 7.395190 TGGAAGATCCAGTGTTTTGATAATG 57.605 36.000 0.00 0.00 42.67 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.