Multiple sequence alignment - TraesCS3A01G534500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G534500 chr3A 100.000 2924 0 0 1 2924 746350404 746353327 0.000000e+00 5400.0
1 TraesCS3A01G534500 chr3A 91.264 1179 43 35 664 1799 746364419 746363258 0.000000e+00 1552.0
2 TraesCS3A01G534500 chr3A 92.233 824 29 16 980 1799 746313159 746313951 0.000000e+00 1134.0
3 TraesCS3A01G534500 chr3A 92.386 197 15 0 1273 1469 315281077 315281273 6.170000e-72 281.0
4 TraesCS3A01G534500 chr3A 95.495 111 5 0 2349 2459 642924828 642924938 8.330000e-41 178.0
5 TraesCS3A01G534500 chr3A 93.388 121 5 2 2352 2469 659558273 659558153 2.990000e-40 176.0
6 TraesCS3A01G534500 chr3B 85.110 1585 108 63 475 1999 829289701 829288185 0.000000e+00 1502.0
7 TraesCS3A01G534500 chr3B 89.133 911 58 26 1035 1924 829273491 829274381 0.000000e+00 1096.0
8 TraesCS3A01G534500 chr3B 92.244 361 17 6 1994 2351 829288160 829287808 4.350000e-138 501.0
9 TraesCS3A01G534500 chr3B 87.164 335 38 3 2460 2794 829287805 829287476 2.750000e-100 375.0
10 TraesCS3A01G534500 chr3B 98.026 152 2 1 194 344 662488539 662488388 2.230000e-66 263.0
11 TraesCS3A01G534500 chr3B 77.412 425 49 25 480 883 829273007 829273405 2.950000e-50 209.0
12 TraesCS3A01G534500 chr3B 90.698 129 7 4 2345 2469 693344478 693344351 1.800000e-37 167.0
13 TraesCS3A01G534500 chr3D 90.456 702 41 18 1229 1925 611558763 611559443 0.000000e+00 902.0
14 TraesCS3A01G534500 chr3D 87.092 705 41 23 1686 2351 611567821 611567128 0.000000e+00 752.0
15 TraesCS3A01G534500 chr3D 97.838 370 8 0 1229 1598 611568263 611567894 8.840000e-180 640.0
16 TraesCS3A01G534500 chr3D 80.305 919 67 44 356 1230 611569197 611568349 9.030000e-165 590.0
17 TraesCS3A01G534500 chr3D 86.441 295 11 5 2631 2924 611566986 611566720 2.200000e-76 296.0
18 TraesCS3A01G534500 chr3D 91.333 150 13 0 1081 1230 611558528 611558677 3.820000e-49 206.0
19 TraesCS3A01G534500 chrUn 88.889 387 24 11 1448 1830 480633103 480633474 2.660000e-125 459.0
20 TraesCS3A01G534500 chr6A 87.432 366 45 1 1104 1469 361909927 361909563 1.250000e-113 420.0
21 TraesCS3A01G534500 chr2B 99.338 151 1 0 194 344 693229890 693229740 1.030000e-69 274.0
22 TraesCS3A01G534500 chr7B 98.026 152 2 1 194 344 222316391 222316240 2.230000e-66 263.0
23 TraesCS3A01G534500 chr7B 98.000 150 3 0 194 343 51062619 51062470 8.040000e-66 261.0
24 TraesCS3A01G534500 chr7B 96.364 110 4 0 2350 2459 34609646 34609755 6.440000e-42 182.0
25 TraesCS3A01G534500 chr7A 98.013 151 3 0 194 344 626608518 626608368 2.230000e-66 263.0
26 TraesCS3A01G534500 chr7A 98.013 151 3 0 194 344 729398871 729398721 2.230000e-66 263.0
27 TraesCS3A01G534500 chr7A 93.064 173 10 2 174 344 261882235 261882407 4.840000e-63 252.0
28 TraesCS3A01G534500 chr7A 94.783 115 5 1 2352 2465 138162444 138162558 8.330000e-41 178.0
29 TraesCS3A01G534500 chr7A 94.737 114 6 0 2352 2465 316272990 316273103 8.330000e-41 178.0
30 TraesCS3A01G534500 chr2A 95.652 161 6 1 185 344 115806948 115806788 1.040000e-64 257.0
31 TraesCS3A01G534500 chr5B 92.982 171 10 2 175 344 569133627 569133796 6.260000e-62 248.0
32 TraesCS3A01G534500 chr5B 96.330 109 4 0 2352 2460 669302591 669302699 2.320000e-41 180.0
33 TraesCS3A01G534500 chr5B 95.495 111 5 0 2349 2459 464325464 464325574 8.330000e-41 178.0
34 TraesCS3A01G534500 chr5D 97.222 108 3 0 2352 2459 560243042 560242935 1.790000e-42 183.0
35 TraesCS3A01G534500 chr4B 88.125 160 11 3 1632 1791 581489732 581489581 1.790000e-42 183.0
36 TraesCS3A01G534500 chr1B 87.500 160 12 2 1632 1791 663374788 663374637 8.330000e-41 178.0
37 TraesCS3A01G534500 chr1B 83.838 99 14 2 1199 1296 492306571 492306668 3.100000e-15 93.5
38 TraesCS3A01G534500 chr1B 79.231 130 27 0 1463 1592 492307179 492307308 1.120000e-14 91.6
39 TraesCS3A01G534500 chr1D 87.368 95 12 0 1106 1200 367847799 367847893 3.080000e-20 110.0
40 TraesCS3A01G534500 chr1D 80.315 127 25 0 1466 1592 367848615 367848741 2.400000e-16 97.1
41 TraesCS3A01G534500 chr1D 83.838 99 14 2 1199 1296 367848015 367848112 3.100000e-15 93.5
42 TraesCS3A01G534500 chr1A 87.368 95 12 0 1106 1200 467184635 467184729 3.080000e-20 110.0
43 TraesCS3A01G534500 chr1A 81.102 127 24 0 1466 1592 467185492 467185618 5.160000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G534500 chr3A 746350404 746353327 2923 False 5400.000000 5400 100.000000 1 2924 1 chr3A.!!$F4 2923
1 TraesCS3A01G534500 chr3A 746363258 746364419 1161 True 1552.000000 1552 91.264000 664 1799 1 chr3A.!!$R2 1135
2 TraesCS3A01G534500 chr3A 746313159 746313951 792 False 1134.000000 1134 92.233000 980 1799 1 chr3A.!!$F3 819
3 TraesCS3A01G534500 chr3B 829287476 829289701 2225 True 792.666667 1502 88.172667 475 2794 3 chr3B.!!$R3 2319
4 TraesCS3A01G534500 chr3B 829273007 829274381 1374 False 652.500000 1096 83.272500 480 1924 2 chr3B.!!$F1 1444
5 TraesCS3A01G534500 chr3D 611566720 611569197 2477 True 569.500000 752 87.919000 356 2924 4 chr3D.!!$R1 2568
6 TraesCS3A01G534500 chr3D 611558528 611559443 915 False 554.000000 902 90.894500 1081 1925 2 chr3D.!!$F1 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.034756 TGACAACACATGCCGCTACT 59.965 50.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2361 0.975887 TTGGGAAAAGAATGCCCTGC 59.024 50.0 0.0 0.0 42.52 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.427905 CATGTATGCGCGCATGGC 60.428 61.111 46.79 37.71 38.90 4.40
18 19 2.901339 ATGTATGCGCGCATGGCA 60.901 55.556 46.79 40.96 45.71 4.92
19 20 2.900167 ATGTATGCGCGCATGGCAG 61.900 57.895 46.79 1.07 44.71 4.85
20 21 4.969604 GTATGCGCGCATGGCAGC 62.970 66.667 46.79 29.32 44.71 5.25
34 35 2.049526 CAGCGGCACACGTCTGTA 60.050 61.111 1.45 0.00 46.52 2.74
35 36 2.049433 AGCGGCACACGTCTGTAC 60.049 61.111 1.45 0.00 46.52 2.90
36 37 2.049433 GCGGCACACGTCTGTACT 60.049 61.111 0.00 0.00 46.52 2.73
37 38 2.372690 GCGGCACACGTCTGTACTG 61.373 63.158 0.00 0.00 46.52 2.74
38 39 1.284715 CGGCACACGTCTGTACTGA 59.715 57.895 0.00 0.00 37.93 3.41
39 40 0.318360 CGGCACACGTCTGTACTGAA 60.318 55.000 3.77 0.00 37.93 3.02
40 41 1.137513 GGCACACGTCTGTACTGAAC 58.862 55.000 3.77 0.00 0.00 3.18
41 42 0.776451 GCACACGTCTGTACTGAACG 59.224 55.000 16.85 16.85 0.00 3.95
42 43 0.776451 CACACGTCTGTACTGAACGC 59.224 55.000 17.75 2.96 0.00 4.84
43 44 0.382873 ACACGTCTGTACTGAACGCA 59.617 50.000 17.75 0.00 0.00 5.24
44 45 0.776451 CACGTCTGTACTGAACGCAC 59.224 55.000 17.75 2.85 0.00 5.34
45 46 0.659417 ACGTCTGTACTGAACGCACG 60.659 55.000 17.75 13.61 0.00 5.34
46 47 0.385098 CGTCTGTACTGAACGCACGA 60.385 55.000 3.77 0.00 0.00 4.35
47 48 1.050767 GTCTGTACTGAACGCACGAC 58.949 55.000 3.77 0.00 0.00 4.34
60 61 1.992170 GCACGACGAAATACAGAGGT 58.008 50.000 0.00 0.00 0.00 3.85
61 62 3.141002 GCACGACGAAATACAGAGGTA 57.859 47.619 0.00 0.00 0.00 3.08
62 63 2.850647 GCACGACGAAATACAGAGGTAC 59.149 50.000 0.00 0.00 30.94 3.34
63 64 3.096461 CACGACGAAATACAGAGGTACG 58.904 50.000 0.00 0.00 30.94 3.67
64 65 2.744202 ACGACGAAATACAGAGGTACGT 59.256 45.455 0.00 0.00 33.92 3.57
65 66 3.932710 ACGACGAAATACAGAGGTACGTA 59.067 43.478 0.00 0.00 32.15 3.57
66 67 4.391830 ACGACGAAATACAGAGGTACGTAA 59.608 41.667 0.00 0.00 32.15 3.18
67 68 4.725754 CGACGAAATACAGAGGTACGTAAC 59.274 45.833 1.22 1.22 32.15 2.50
80 81 4.394099 GTACGTAACCACATCAACCAAC 57.606 45.455 0.00 0.00 0.00 3.77
81 82 3.202829 ACGTAACCACATCAACCAACT 57.797 42.857 0.00 0.00 0.00 3.16
82 83 4.339872 ACGTAACCACATCAACCAACTA 57.660 40.909 0.00 0.00 0.00 2.24
83 84 4.901868 ACGTAACCACATCAACCAACTAT 58.098 39.130 0.00 0.00 0.00 2.12
84 85 6.040209 ACGTAACCACATCAACCAACTATA 57.960 37.500 0.00 0.00 0.00 1.31
85 86 6.465948 ACGTAACCACATCAACCAACTATAA 58.534 36.000 0.00 0.00 0.00 0.98
86 87 6.935771 ACGTAACCACATCAACCAACTATAAA 59.064 34.615 0.00 0.00 0.00 1.40
87 88 7.444792 ACGTAACCACATCAACCAACTATAAAA 59.555 33.333 0.00 0.00 0.00 1.52
88 89 7.747357 CGTAACCACATCAACCAACTATAAAAC 59.253 37.037 0.00 0.00 0.00 2.43
89 90 6.584185 ACCACATCAACCAACTATAAAACC 57.416 37.500 0.00 0.00 0.00 3.27
90 91 6.311735 ACCACATCAACCAACTATAAAACCT 58.688 36.000 0.00 0.00 0.00 3.50
91 92 6.780522 ACCACATCAACCAACTATAAAACCTT 59.219 34.615 0.00 0.00 0.00 3.50
92 93 7.289084 ACCACATCAACCAACTATAAAACCTTT 59.711 33.333 0.00 0.00 0.00 3.11
93 94 8.147704 CCACATCAACCAACTATAAAACCTTTT 58.852 33.333 0.00 0.00 0.00 2.27
96 97 9.634163 CATCAACCAACTATAAAACCTTTTACC 57.366 33.333 0.00 0.00 35.65 2.85
97 98 8.999905 TCAACCAACTATAAAACCTTTTACCT 57.000 30.769 0.00 0.00 35.65 3.08
217 218 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
218 219 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
219 220 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
220 221 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
226 227 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
232 233 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
233 234 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
234 235 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
235 236 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
236 237 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
237 238 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
238 239 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
246 247 2.090400 CATCTGGGAGATGCATACGG 57.910 55.000 0.00 0.00 44.69 4.02
247 248 0.322975 ATCTGGGAGATGCATACGGC 59.677 55.000 0.00 0.00 45.13 5.68
248 249 1.302033 CTGGGAGATGCATACGGCC 60.302 63.158 0.00 0.00 43.89 6.13
249 250 2.043604 CTGGGAGATGCATACGGCCA 62.044 60.000 2.24 0.61 43.89 5.36
250 251 1.598130 GGGAGATGCATACGGCCAC 60.598 63.158 2.24 0.00 43.89 5.01
251 252 1.447643 GGAGATGCATACGGCCACT 59.552 57.895 2.24 0.00 43.89 4.00
252 253 0.179045 GGAGATGCATACGGCCACTT 60.179 55.000 2.24 0.00 43.89 3.16
253 254 1.668419 GAGATGCATACGGCCACTTT 58.332 50.000 2.24 0.00 43.89 2.66
254 255 2.484770 GGAGATGCATACGGCCACTTTA 60.485 50.000 2.24 0.00 43.89 1.85
255 256 3.403038 GAGATGCATACGGCCACTTTAT 58.597 45.455 2.24 0.00 43.89 1.40
256 257 3.815401 GAGATGCATACGGCCACTTTATT 59.185 43.478 2.24 0.00 43.89 1.40
257 258 3.565482 AGATGCATACGGCCACTTTATTG 59.435 43.478 2.24 0.00 43.89 1.90
258 259 2.992593 TGCATACGGCCACTTTATTGA 58.007 42.857 2.24 0.00 43.89 2.57
259 260 3.550820 TGCATACGGCCACTTTATTGAT 58.449 40.909 2.24 0.00 43.89 2.57
260 261 3.951037 TGCATACGGCCACTTTATTGATT 59.049 39.130 2.24 0.00 43.89 2.57
261 262 5.126779 TGCATACGGCCACTTTATTGATTA 58.873 37.500 2.24 0.00 43.89 1.75
262 263 5.767665 TGCATACGGCCACTTTATTGATTAT 59.232 36.000 2.24 0.00 43.89 1.28
263 264 6.264292 TGCATACGGCCACTTTATTGATTATT 59.736 34.615 2.24 0.00 43.89 1.40
264 265 7.145323 GCATACGGCCACTTTATTGATTATTT 58.855 34.615 2.24 0.00 36.11 1.40
265 266 7.651704 GCATACGGCCACTTTATTGATTATTTT 59.348 33.333 2.24 0.00 36.11 1.82
266 267 9.180678 CATACGGCCACTTTATTGATTATTTTC 57.819 33.333 2.24 0.00 0.00 2.29
267 268 7.164230 ACGGCCACTTTATTGATTATTTTCA 57.836 32.000 2.24 0.00 0.00 2.69
268 269 7.257722 ACGGCCACTTTATTGATTATTTTCAG 58.742 34.615 2.24 0.00 0.00 3.02
269 270 6.697019 CGGCCACTTTATTGATTATTTTCAGG 59.303 38.462 2.24 0.00 0.00 3.86
270 271 7.416213 CGGCCACTTTATTGATTATTTTCAGGA 60.416 37.037 2.24 0.00 0.00 3.86
271 272 7.706607 GGCCACTTTATTGATTATTTTCAGGAC 59.293 37.037 0.00 0.00 0.00 3.85
272 273 7.706607 GCCACTTTATTGATTATTTTCAGGACC 59.293 37.037 0.00 0.00 0.00 4.46
273 274 8.971073 CCACTTTATTGATTATTTTCAGGACCT 58.029 33.333 0.00 0.00 0.00 3.85
281 282 8.934023 TGATTATTTTCAGGACCTTACAAAGT 57.066 30.769 0.00 0.00 0.00 2.66
287 288 9.802039 ATTTTCAGGACCTTACAAAGTATTACA 57.198 29.630 0.00 0.00 0.00 2.41
288 289 9.629878 TTTTCAGGACCTTACAAAGTATTACAA 57.370 29.630 0.00 0.00 0.00 2.41
289 290 8.611654 TTCAGGACCTTACAAAGTATTACAAC 57.388 34.615 0.00 0.00 0.00 3.32
290 291 7.737869 TCAGGACCTTACAAAGTATTACAACA 58.262 34.615 0.00 0.00 0.00 3.33
291 292 8.212312 TCAGGACCTTACAAAGTATTACAACAA 58.788 33.333 0.00 0.00 0.00 2.83
292 293 9.010029 CAGGACCTTACAAAGTATTACAACAAT 57.990 33.333 0.00 0.00 0.00 2.71
293 294 9.010029 AGGACCTTACAAAGTATTACAACAATG 57.990 33.333 0.00 0.00 0.00 2.82
294 295 9.005777 GGACCTTACAAAGTATTACAACAATGA 57.994 33.333 0.00 0.00 0.00 2.57
296 297 8.512138 ACCTTACAAAGTATTACAACAATGAGC 58.488 33.333 0.00 0.00 0.00 4.26
297 298 7.968405 CCTTACAAAGTATTACAACAATGAGCC 59.032 37.037 0.00 0.00 0.00 4.70
298 299 8.630054 TTACAAAGTATTACAACAATGAGCCT 57.370 30.769 0.00 0.00 0.00 4.58
299 300 6.913170 ACAAAGTATTACAACAATGAGCCTG 58.087 36.000 0.00 0.00 0.00 4.85
300 301 6.714810 ACAAAGTATTACAACAATGAGCCTGA 59.285 34.615 0.00 0.00 0.00 3.86
301 302 7.230510 ACAAAGTATTACAACAATGAGCCTGAA 59.769 33.333 0.00 0.00 0.00 3.02
302 303 7.944729 AAGTATTACAACAATGAGCCTGAAT 57.055 32.000 0.00 0.00 0.00 2.57
303 304 7.559590 AGTATTACAACAATGAGCCTGAATC 57.440 36.000 0.00 0.00 0.00 2.52
304 305 5.841957 ATTACAACAATGAGCCTGAATCC 57.158 39.130 0.00 0.00 0.00 3.01
305 306 3.159213 ACAACAATGAGCCTGAATCCA 57.841 42.857 0.00 0.00 0.00 3.41
306 307 2.821969 ACAACAATGAGCCTGAATCCAC 59.178 45.455 0.00 0.00 0.00 4.02
307 308 2.134789 ACAATGAGCCTGAATCCACC 57.865 50.000 0.00 0.00 0.00 4.61
308 309 1.355381 ACAATGAGCCTGAATCCACCA 59.645 47.619 0.00 0.00 0.00 4.17
309 310 2.024655 ACAATGAGCCTGAATCCACCAT 60.025 45.455 0.00 0.00 0.00 3.55
310 311 2.621998 CAATGAGCCTGAATCCACCATC 59.378 50.000 0.00 0.00 0.00 3.51
311 312 1.588239 TGAGCCTGAATCCACCATCT 58.412 50.000 0.00 0.00 0.00 2.90
312 313 1.918262 TGAGCCTGAATCCACCATCTT 59.082 47.619 0.00 0.00 0.00 2.40
313 314 2.295885 GAGCCTGAATCCACCATCTTG 58.704 52.381 0.00 0.00 0.00 3.02
314 315 1.918262 AGCCTGAATCCACCATCTTGA 59.082 47.619 0.00 0.00 0.00 3.02
315 316 2.019984 GCCTGAATCCACCATCTTGAC 58.980 52.381 0.00 0.00 0.00 3.18
316 317 2.618816 GCCTGAATCCACCATCTTGACA 60.619 50.000 0.00 0.00 0.00 3.58
317 318 3.689347 CCTGAATCCACCATCTTGACAA 58.311 45.455 0.00 0.00 0.00 3.18
318 319 3.441572 CCTGAATCCACCATCTTGACAAC 59.558 47.826 0.00 0.00 0.00 3.32
319 320 4.074259 CTGAATCCACCATCTTGACAACA 58.926 43.478 0.00 0.00 0.00 3.33
320 321 3.820467 TGAATCCACCATCTTGACAACAC 59.180 43.478 0.00 0.00 0.00 3.32
321 322 3.507162 ATCCACCATCTTGACAACACA 57.493 42.857 0.00 0.00 0.00 3.72
322 323 3.507162 TCCACCATCTTGACAACACAT 57.493 42.857 0.00 0.00 0.00 3.21
323 324 3.148412 TCCACCATCTTGACAACACATG 58.852 45.455 0.00 0.00 0.00 3.21
324 325 2.352030 CCACCATCTTGACAACACATGC 60.352 50.000 0.00 0.00 0.00 4.06
325 326 1.888512 ACCATCTTGACAACACATGCC 59.111 47.619 0.00 0.00 0.00 4.40
326 327 1.135603 CCATCTTGACAACACATGCCG 60.136 52.381 0.00 0.00 0.00 5.69
327 328 0.523072 ATCTTGACAACACATGCCGC 59.477 50.000 0.00 0.00 0.00 6.53
328 329 0.534877 TCTTGACAACACATGCCGCT 60.535 50.000 0.00 0.00 0.00 5.52
329 330 1.155889 CTTGACAACACATGCCGCTA 58.844 50.000 0.00 0.00 0.00 4.26
330 331 0.871722 TTGACAACACATGCCGCTAC 59.128 50.000 0.00 0.00 0.00 3.58
331 332 0.034756 TGACAACACATGCCGCTACT 59.965 50.000 0.00 0.00 0.00 2.57
332 333 0.721718 GACAACACATGCCGCTACTC 59.278 55.000 0.00 0.00 0.00 2.59
333 334 0.673644 ACAACACATGCCGCTACTCC 60.674 55.000 0.00 0.00 0.00 3.85
334 335 0.391661 CAACACATGCCGCTACTCCT 60.392 55.000 0.00 0.00 0.00 3.69
335 336 1.134818 CAACACATGCCGCTACTCCTA 60.135 52.381 0.00 0.00 0.00 2.94
336 337 1.414158 ACACATGCCGCTACTCCTAT 58.586 50.000 0.00 0.00 0.00 2.57
337 338 1.341531 ACACATGCCGCTACTCCTATC 59.658 52.381 0.00 0.00 0.00 2.08
338 339 0.969894 ACATGCCGCTACTCCTATCC 59.030 55.000 0.00 0.00 0.00 2.59
339 340 0.969149 CATGCCGCTACTCCTATCCA 59.031 55.000 0.00 0.00 0.00 3.41
340 341 1.344438 CATGCCGCTACTCCTATCCAA 59.656 52.381 0.00 0.00 0.00 3.53
341 342 1.491668 TGCCGCTACTCCTATCCAAA 58.508 50.000 0.00 0.00 0.00 3.28
342 343 1.834896 TGCCGCTACTCCTATCCAAAA 59.165 47.619 0.00 0.00 0.00 2.44
343 344 2.438021 TGCCGCTACTCCTATCCAAAAT 59.562 45.455 0.00 0.00 0.00 1.82
344 345 3.644265 TGCCGCTACTCCTATCCAAAATA 59.356 43.478 0.00 0.00 0.00 1.40
345 346 4.101898 TGCCGCTACTCCTATCCAAAATAA 59.898 41.667 0.00 0.00 0.00 1.40
346 347 5.061179 GCCGCTACTCCTATCCAAAATAAA 58.939 41.667 0.00 0.00 0.00 1.40
347 348 5.179555 GCCGCTACTCCTATCCAAAATAAAG 59.820 44.000 0.00 0.00 0.00 1.85
348 349 6.522054 CCGCTACTCCTATCCAAAATAAAGA 58.478 40.000 0.00 0.00 0.00 2.52
349 350 7.162082 CCGCTACTCCTATCCAAAATAAAGAT 58.838 38.462 0.00 0.00 0.00 2.40
350 351 8.311836 CCGCTACTCCTATCCAAAATAAAGATA 58.688 37.037 0.00 0.00 0.00 1.98
351 352 9.141400 CGCTACTCCTATCCAAAATAAAGATAC 57.859 37.037 0.00 0.00 0.00 2.24
352 353 9.998106 GCTACTCCTATCCAAAATAAAGATACA 57.002 33.333 0.00 0.00 0.00 2.29
396 399 6.639632 AAAATGTGAGTGCTGTACAGAAAT 57.360 33.333 27.08 16.26 0.00 2.17
397 400 5.869753 AATGTGAGTGCTGTACAGAAATC 57.130 39.130 27.08 24.35 31.90 2.17
406 409 3.678072 GCTGTACAGAAATCTAACGCACA 59.322 43.478 27.08 0.00 0.00 4.57
407 410 4.330074 GCTGTACAGAAATCTAACGCACAT 59.670 41.667 27.08 0.00 0.00 3.21
426 429 3.408755 TGCACACGCAGTCACTTG 58.591 55.556 0.00 0.00 45.36 3.16
427 430 1.449423 TGCACACGCAGTCACTTGT 60.449 52.632 0.00 0.00 45.36 3.16
428 431 1.010797 GCACACGCAGTCACTTGTG 60.011 57.895 4.01 4.01 41.61 3.33
429 432 1.428370 GCACACGCAGTCACTTGTGA 61.428 55.000 11.61 0.00 41.61 3.58
430 433 1.006086 CACACGCAGTCACTTGTGAA 58.994 50.000 12.83 0.00 41.61 3.18
431 434 1.004610 CACACGCAGTCACTTGTGAAG 60.005 52.381 12.83 3.01 41.61 3.02
432 435 1.290203 CACGCAGTCACTTGTGAAGT 58.710 50.000 4.93 1.67 41.61 3.01
433 436 1.665679 CACGCAGTCACTTGTGAAGTT 59.334 47.619 4.93 0.00 41.61 2.66
440 443 4.149571 CAGTCACTTGTGAAGTTCTGATCG 59.850 45.833 4.93 0.00 40.46 3.69
452 455 2.616842 GTTCTGATCGAGTCTCCTCTCC 59.383 54.545 0.00 0.00 35.43 3.71
453 456 1.840635 TCTGATCGAGTCTCCTCTCCA 59.159 52.381 0.00 0.00 35.43 3.86
454 457 2.158827 TCTGATCGAGTCTCCTCTCCAG 60.159 54.545 0.00 0.00 35.43 3.86
457 460 1.281419 TCGAGTCTCCTCTCCAGTCT 58.719 55.000 0.00 0.00 35.43 3.24
458 461 1.208535 TCGAGTCTCCTCTCCAGTCTC 59.791 57.143 0.00 0.00 35.43 3.36
459 462 1.745827 CGAGTCTCCTCTCCAGTCTCC 60.746 61.905 0.00 0.00 35.43 3.71
460 463 1.283613 GAGTCTCCTCTCCAGTCTCCA 59.716 57.143 0.00 0.00 34.69 3.86
461 464 1.005450 AGTCTCCTCTCCAGTCTCCAC 59.995 57.143 0.00 0.00 0.00 4.02
462 465 1.076438 TCTCCTCTCCAGTCTCCACA 58.924 55.000 0.00 0.00 0.00 4.17
463 466 1.005332 TCTCCTCTCCAGTCTCCACAG 59.995 57.143 0.00 0.00 0.00 3.66
464 467 0.040351 TCCTCTCCAGTCTCCACAGG 59.960 60.000 0.00 0.00 0.00 4.00
465 468 0.975040 CCTCTCCAGTCTCCACAGGG 60.975 65.000 0.00 0.00 29.89 4.45
466 469 0.252012 CTCTCCAGTCTCCACAGGGT 60.252 60.000 0.00 0.00 34.93 4.34
467 470 1.006043 CTCTCCAGTCTCCACAGGGTA 59.994 57.143 0.00 0.00 34.93 3.69
499 508 4.980805 TGGCGTTGACGTGGCCTC 62.981 66.667 3.32 0.00 46.97 4.70
520 530 0.752743 CCATCCCATCACGGCAACAT 60.753 55.000 0.00 0.00 0.00 2.71
521 531 0.382873 CATCCCATCACGGCAACATG 59.617 55.000 0.00 0.00 0.00 3.21
524 534 1.597797 CCCATCACGGCAACATGCTT 61.598 55.000 2.00 0.00 44.28 3.91
526 536 0.522626 CATCACGGCAACATGCTTGA 59.477 50.000 6.60 6.06 44.28 3.02
527 540 0.523072 ATCACGGCAACATGCTTGAC 59.477 50.000 6.60 7.70 44.28 3.18
528 541 0.817229 TCACGGCAACATGCTTGACA 60.817 50.000 6.60 0.00 44.28 3.58
588 601 0.107897 TTCACGCCGGCAACATATCT 60.108 50.000 28.98 0.00 0.00 1.98
602 615 0.882042 ATATCTCGCAGCAAAGGCCG 60.882 55.000 0.00 0.00 42.56 6.13
621 634 1.527034 GAGTCAGCAATTCAGCACCA 58.473 50.000 0.00 0.00 36.85 4.17
624 637 0.895100 TCAGCAATTCAGCACCACCC 60.895 55.000 0.00 0.00 36.85 4.61
656 680 1.449246 CTTCTTCCTCTGCCCTGCG 60.449 63.158 0.00 0.00 0.00 5.18
702 731 4.102681 GGCTATAAAAAGGGAGGCAGAGTA 59.897 45.833 0.00 0.00 34.76 2.59
710 739 1.133325 GGGAGGCAGAGTATCCTCTCA 60.133 57.143 8.04 0.00 45.08 3.27
713 742 3.495331 GAGGCAGAGTATCCTCTCATCA 58.505 50.000 1.30 0.00 45.08 3.07
732 773 0.322975 ACCACACCACAGCTGATCTC 59.677 55.000 23.35 0.00 0.00 2.75
752 798 1.117749 AGTCCACAGCACAGCAGAGA 61.118 55.000 0.00 0.00 0.00 3.10
755 801 1.575576 CCACAGCACAGCAGAGAAGC 61.576 60.000 0.00 0.00 0.00 3.86
756 802 0.883370 CACAGCACAGCAGAGAAGCA 60.883 55.000 0.00 0.00 36.85 3.91
757 803 0.036448 ACAGCACAGCAGAGAAGCAT 59.964 50.000 0.00 0.00 36.85 3.79
792 848 2.125766 AACGCAAAGTCCCTCCCTCC 62.126 60.000 0.00 0.00 0.00 4.30
824 882 3.684315 GTTGCGTTGCGTCGTCGA 61.684 61.111 6.17 0.00 39.71 4.20
873 942 1.456518 CTCCGGCCAGATCTCCTCA 60.457 63.158 2.24 0.00 0.00 3.86
884 953 3.691342 CTCCTCAACACCGCCGGA 61.691 66.667 11.71 0.00 0.00 5.14
898 968 2.266055 CGGAAGGGAGTGGTGAGC 59.734 66.667 0.00 0.00 0.00 4.26
952 1022 2.358898 ACACACTGCACACTTCCATTTC 59.641 45.455 0.00 0.00 0.00 2.17
978 1058 1.081509 CAGATCGAGCGCTAGCCTC 60.082 63.158 11.50 18.19 46.67 4.70
1795 1990 1.277557 AGCACTCCATGTCAGTTCTCC 59.722 52.381 0.00 0.00 0.00 3.71
1831 2027 6.313658 TCGATTCTCGATTCATGTTGAAACAT 59.686 34.615 2.80 2.80 46.14 2.71
1846 2071 7.770201 TGTTGAAACATGAGAAATTGAACTGA 58.230 30.769 0.00 0.00 33.17 3.41
1847 2072 8.415553 TGTTGAAACATGAGAAATTGAACTGAT 58.584 29.630 0.00 0.00 33.17 2.90
1848 2073 8.697067 GTTGAAACATGAGAAATTGAACTGATG 58.303 33.333 0.00 0.00 34.80 3.07
1849 2074 8.168790 TGAAACATGAGAAATTGAACTGATGA 57.831 30.769 0.00 0.00 33.38 2.92
1857 2082 9.185680 TGAGAAATTGAACTGATGAATGATGAT 57.814 29.630 0.00 0.00 0.00 2.45
1932 2157 5.186215 GGGCCTGAGAAGGTAGATAATAGAC 59.814 48.000 0.84 0.00 0.00 2.59
1978 2207 7.124599 TGCTGGAGGATGTTGATGAAAAATTAT 59.875 33.333 0.00 0.00 0.00 1.28
2135 2397 9.675464 CTTTTCCCAACTACCTTATGTAATACA 57.325 33.333 0.00 0.00 0.00 2.29
2180 2442 5.251932 TGAGATGTTGGTATACTTTTCCCCA 59.748 40.000 2.25 0.00 0.00 4.96
2182 2444 4.726035 TGTTGGTATACTTTTCCCCACA 57.274 40.909 2.25 0.00 0.00 4.17
2221 2490 5.623264 TGAATCGTTTATTTTGTCGCAACTG 59.377 36.000 0.00 0.00 0.00 3.16
2258 2527 2.886523 TGCTGTGTGGATTTTCTGGAAG 59.113 45.455 0.00 0.00 0.00 3.46
2337 2607 3.243201 GGAAGAAAGCAGTGGTGTTTCAG 60.243 47.826 8.92 0.00 33.43 3.02
2344 2614 2.486548 GCAGTGGTGTTTCAGTCCCTTA 60.487 50.000 0.00 0.00 0.00 2.69
2351 2621 5.070685 GGTGTTTCAGTCCCTTAATCAACT 58.929 41.667 0.00 0.00 0.00 3.16
2352 2622 6.183361 TGGTGTTTCAGTCCCTTAATCAACTA 60.183 38.462 0.00 0.00 0.00 2.24
2353 2623 6.148976 GGTGTTTCAGTCCCTTAATCAACTAC 59.851 42.308 0.00 0.00 0.00 2.73
2354 2624 6.935208 GTGTTTCAGTCCCTTAATCAACTACT 59.065 38.462 0.00 0.00 0.00 2.57
2355 2625 7.117956 GTGTTTCAGTCCCTTAATCAACTACTC 59.882 40.741 0.00 0.00 0.00 2.59
2356 2626 5.934402 TCAGTCCCTTAATCAACTACTCC 57.066 43.478 0.00 0.00 0.00 3.85
2357 2627 4.715297 TCAGTCCCTTAATCAACTACTCCC 59.285 45.833 0.00 0.00 0.00 4.30
2358 2628 4.717280 CAGTCCCTTAATCAACTACTCCCT 59.283 45.833 0.00 0.00 0.00 4.20
2359 2629 4.963628 AGTCCCTTAATCAACTACTCCCTC 59.036 45.833 0.00 0.00 0.00 4.30
2360 2630 4.963628 GTCCCTTAATCAACTACTCCCTCT 59.036 45.833 0.00 0.00 0.00 3.69
2361 2631 4.962995 TCCCTTAATCAACTACTCCCTCTG 59.037 45.833 0.00 0.00 0.00 3.35
2362 2632 4.717280 CCCTTAATCAACTACTCCCTCTGT 59.283 45.833 0.00 0.00 0.00 3.41
2363 2633 5.189934 CCCTTAATCAACTACTCCCTCTGTT 59.810 44.000 0.00 0.00 0.00 3.16
2364 2634 6.342111 CCTTAATCAACTACTCCCTCTGTTC 58.658 44.000 0.00 0.00 0.00 3.18
2365 2635 6.070767 CCTTAATCAACTACTCCCTCTGTTCA 60.071 42.308 0.00 0.00 0.00 3.18
2366 2636 4.810191 ATCAACTACTCCCTCTGTTCAC 57.190 45.455 0.00 0.00 0.00 3.18
2367 2637 3.845860 TCAACTACTCCCTCTGTTCACT 58.154 45.455 0.00 0.00 0.00 3.41
2368 2638 4.223953 TCAACTACTCCCTCTGTTCACTT 58.776 43.478 0.00 0.00 0.00 3.16
2369 2639 4.654262 TCAACTACTCCCTCTGTTCACTTT 59.346 41.667 0.00 0.00 0.00 2.66
2370 2640 5.130477 TCAACTACTCCCTCTGTTCACTTTT 59.870 40.000 0.00 0.00 0.00 2.27
2371 2641 6.325545 TCAACTACTCCCTCTGTTCACTTTTA 59.674 38.462 0.00 0.00 0.00 1.52
2372 2642 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
2373 2643 8.311836 CAACTACTCCCTCTGTTCACTTTTATA 58.688 37.037 0.00 0.00 0.00 0.98
2374 2644 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
2375 2645 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
2376 2646 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
2377 2647 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
2378 2648 5.250774 TCCCTCTGTTCACTTTTATAAGGCT 59.749 40.000 0.00 0.00 35.61 4.58
2379 2649 5.946377 CCCTCTGTTCACTTTTATAAGGCTT 59.054 40.000 4.58 4.58 35.61 4.35
2380 2650 6.434340 CCCTCTGTTCACTTTTATAAGGCTTT 59.566 38.462 4.45 0.00 35.61 3.51
2381 2651 7.308435 CCTCTGTTCACTTTTATAAGGCTTTG 58.692 38.462 4.45 0.00 35.61 2.77
2382 2652 7.040409 CCTCTGTTCACTTTTATAAGGCTTTGT 60.040 37.037 4.45 0.00 35.61 2.83
2383 2653 8.911918 TCTGTTCACTTTTATAAGGCTTTGTA 57.088 30.769 4.45 0.00 35.61 2.41
2384 2654 8.999431 TCTGTTCACTTTTATAAGGCTTTGTAG 58.001 33.333 4.45 0.00 35.61 2.74
2385 2655 8.911918 TGTTCACTTTTATAAGGCTTTGTAGA 57.088 30.769 4.45 0.00 35.61 2.59
2386 2656 9.515226 TGTTCACTTTTATAAGGCTTTGTAGAT 57.485 29.630 4.45 0.00 35.61 1.98
2387 2657 9.774742 GTTCACTTTTATAAGGCTTTGTAGATG 57.225 33.333 4.45 0.00 35.61 2.90
2388 2658 9.515226 TTCACTTTTATAAGGCTTTGTAGATGT 57.485 29.630 4.45 1.05 35.61 3.06
2389 2659 9.515226 TCACTTTTATAAGGCTTTGTAGATGTT 57.485 29.630 4.45 0.00 35.61 2.71
2394 2664 9.733556 TTTATAAGGCTTTGTAGATGTTTCAGA 57.266 29.630 4.45 0.00 0.00 3.27
2395 2665 5.948992 AAGGCTTTGTAGATGTTTCAGAC 57.051 39.130 0.00 0.00 0.00 3.51
2396 2666 4.973168 AGGCTTTGTAGATGTTTCAGACA 58.027 39.130 0.00 0.00 43.71 3.41
2409 2679 7.878477 ATGTTTCAGACATTGTGCAAAATAG 57.122 32.000 0.65 0.00 46.80 1.73
2410 2680 5.691305 TGTTTCAGACATTGTGCAAAATAGC 59.309 36.000 0.65 0.00 32.00 2.97
2411 2681 5.710513 TTCAGACATTGTGCAAAATAGCT 57.289 34.783 0.65 0.00 34.99 3.32
2412 2682 5.300969 TCAGACATTGTGCAAAATAGCTC 57.699 39.130 0.65 0.00 34.99 4.09
2413 2683 4.761227 TCAGACATTGTGCAAAATAGCTCA 59.239 37.500 0.65 0.00 36.35 4.26
2414 2684 5.241285 TCAGACATTGTGCAAAATAGCTCAA 59.759 36.000 0.65 5.99 41.87 3.02
2415 2685 6.071784 TCAGACATTGTGCAAAATAGCTCAAT 60.072 34.615 0.65 9.58 41.87 2.57
2416 2686 6.588756 CAGACATTGTGCAAAATAGCTCAATT 59.411 34.615 0.65 6.05 41.87 2.32
2417 2687 7.117236 CAGACATTGTGCAAAATAGCTCAATTT 59.883 33.333 0.65 7.53 41.87 1.82
2418 2688 7.330208 AGACATTGTGCAAAATAGCTCAATTTC 59.670 33.333 16.01 16.01 41.87 2.17
2419 2689 6.930164 ACATTGTGCAAAATAGCTCAATTTCA 59.070 30.769 0.65 0.00 41.87 2.69
2420 2690 6.768029 TTGTGCAAAATAGCTCAATTTCAC 57.232 33.333 0.00 0.00 41.87 3.18
2421 2691 6.088016 TGTGCAAAATAGCTCAATTTCACT 57.912 33.333 11.85 0.00 35.35 3.41
2422 2692 6.514947 TGTGCAAAATAGCTCAATTTCACTT 58.485 32.000 11.85 0.00 35.35 3.16
2423 2693 6.421501 TGTGCAAAATAGCTCAATTTCACTTG 59.578 34.615 11.85 2.93 35.35 3.16
2424 2694 6.421801 GTGCAAAATAGCTCAATTTCACTTGT 59.578 34.615 0.00 0.00 34.99 3.16
2425 2695 6.642131 TGCAAAATAGCTCAATTTCACTTGTC 59.358 34.615 0.00 0.00 34.99 3.18
2426 2696 6.865205 GCAAAATAGCTCAATTTCACTTGTCT 59.135 34.615 0.00 0.00 0.00 3.41
2427 2697 7.148853 GCAAAATAGCTCAATTTCACTTGTCTG 60.149 37.037 0.00 0.00 0.00 3.51
2428 2698 7.750229 AAATAGCTCAATTTCACTTGTCTGA 57.250 32.000 0.00 0.00 0.00 3.27
2429 2699 7.750229 AATAGCTCAATTTCACTTGTCTGAA 57.250 32.000 0.00 0.00 0.00 3.02
2430 2700 7.750229 ATAGCTCAATTTCACTTGTCTGAAA 57.250 32.000 0.00 0.00 42.83 2.69
2431 2701 5.825507 AGCTCAATTTCACTTGTCTGAAAC 58.174 37.500 0.00 0.00 41.76 2.78
2432 2702 4.672413 GCTCAATTTCACTTGTCTGAAACG 59.328 41.667 0.00 0.00 41.76 3.60
2433 2703 5.504010 GCTCAATTTCACTTGTCTGAAACGA 60.504 40.000 0.00 0.00 41.76 3.85
2434 2704 5.806286 TCAATTTCACTTGTCTGAAACGAC 58.194 37.500 0.00 0.00 41.76 4.34
2435 2705 5.584649 TCAATTTCACTTGTCTGAAACGACT 59.415 36.000 0.00 0.00 41.76 4.18
2436 2706 6.093495 TCAATTTCACTTGTCTGAAACGACTT 59.907 34.615 0.00 0.00 41.76 3.01
2437 2707 7.279090 TCAATTTCACTTGTCTGAAACGACTTA 59.721 33.333 0.00 0.00 41.76 2.24
2438 2708 7.730364 ATTTCACTTGTCTGAAACGACTTAT 57.270 32.000 0.00 0.00 41.76 1.73
2439 2709 8.827177 ATTTCACTTGTCTGAAACGACTTATA 57.173 30.769 0.00 0.00 41.76 0.98
2440 2710 8.651391 TTTCACTTGTCTGAAACGACTTATAA 57.349 30.769 0.00 0.00 35.63 0.98
2441 2711 8.651391 TTCACTTGTCTGAAACGACTTATAAA 57.349 30.769 0.00 0.00 35.00 1.40
2442 2712 8.651391 TCACTTGTCTGAAACGACTTATAAAA 57.349 30.769 0.00 0.00 35.00 1.52
2443 2713 8.761497 TCACTTGTCTGAAACGACTTATAAAAG 58.239 33.333 0.00 0.00 38.77 2.27
2445 2715 8.548721 ACTTGTCTGAAACGACTTATAAAAGTG 58.451 33.333 0.00 0.00 46.09 3.16
2446 2716 8.651391 TTGTCTGAAACGACTTATAAAAGTGA 57.349 30.769 0.00 0.00 46.09 3.41
2447 2717 8.651391 TGTCTGAAACGACTTATAAAAGTGAA 57.349 30.769 0.00 0.00 46.09 3.18
2448 2718 8.545420 TGTCTGAAACGACTTATAAAAGTGAAC 58.455 33.333 0.00 0.00 46.09 3.18
2449 2719 7.734726 GTCTGAAACGACTTATAAAAGTGAACG 59.265 37.037 0.00 0.00 46.09 3.95
2450 2720 6.879962 TGAAACGACTTATAAAAGTGAACGG 58.120 36.000 0.00 0.00 46.09 4.44
2451 2721 5.851047 AACGACTTATAAAAGTGAACGGG 57.149 39.130 0.00 0.00 46.09 5.28
2452 2722 4.248058 ACGACTTATAAAAGTGAACGGGG 58.752 43.478 0.00 0.00 46.09 5.73
2453 2723 3.619929 CGACTTATAAAAGTGAACGGGGG 59.380 47.826 0.00 0.00 46.09 5.40
2609 2879 0.669625 GAAGGACGCGTTGCTAACCT 60.670 55.000 15.53 11.67 0.00 3.50
2611 2881 0.822164 AGGACGCGTTGCTAACCTAT 59.178 50.000 15.53 0.00 0.00 2.57
2613 2883 0.844503 GACGCGTTGCTAACCTATCG 59.155 55.000 15.53 0.00 0.00 2.92
2617 2887 2.537401 GCGTTGCTAACCTATCGAGTT 58.463 47.619 0.00 0.00 0.00 3.01
2645 2915 4.565564 GCATTGCTCATTTCACCTTTCATC 59.434 41.667 0.16 0.00 0.00 2.92
2646 2916 5.716094 CATTGCTCATTTCACCTTTCATCA 58.284 37.500 0.00 0.00 0.00 3.07
2647 2917 5.988310 TTGCTCATTTCACCTTTCATCAT 57.012 34.783 0.00 0.00 0.00 2.45
2662 2932 9.590451 ACCTTTCATCATGCAGTAAAATAAATG 57.410 29.630 0.00 0.00 0.00 2.32
2667 2937 7.914871 TCATCATGCAGTAAAATAAATGAACCG 59.085 33.333 0.00 0.00 0.00 4.44
2671 2941 5.106078 TGCAGTAAAATAAATGAACCGTCCC 60.106 40.000 0.00 0.00 0.00 4.46
2712 2982 5.916883 AGCGAAACAATGTGAATTCAAGAAG 59.083 36.000 10.35 3.82 0.00 2.85
2714 2984 6.417635 GCGAAACAATGTGAATTCAAGAAGAA 59.582 34.615 10.35 0.00 41.28 2.52
2775 3045 1.134007 TCAAGTCATGCCCTGCTATGG 60.134 52.381 0.00 0.00 0.00 2.74
2794 3064 0.681733 GTCTGCTCTTGACCACAGGA 59.318 55.000 0.00 0.00 0.00 3.86
2795 3065 0.681733 TCTGCTCTTGACCACAGGAC 59.318 55.000 0.00 0.00 0.00 3.85
2796 3066 0.394192 CTGCTCTTGACCACAGGACA 59.606 55.000 0.00 0.00 0.00 4.02
2797 3067 0.394192 TGCTCTTGACCACAGGACAG 59.606 55.000 0.00 0.00 0.00 3.51
2798 3068 0.321122 GCTCTTGACCACAGGACAGG 60.321 60.000 0.00 0.00 0.00 4.00
2799 3069 0.321122 CTCTTGACCACAGGACAGGC 60.321 60.000 0.00 0.00 0.00 4.85
2800 3070 1.053835 TCTTGACCACAGGACAGGCA 61.054 55.000 0.00 0.00 0.00 4.75
2801 3071 0.604780 CTTGACCACAGGACAGGCAG 60.605 60.000 0.00 0.00 0.00 4.85
2802 3072 2.055689 TTGACCACAGGACAGGCAGG 62.056 60.000 0.00 0.00 0.00 4.85
2803 3073 3.252284 ACCACAGGACAGGCAGGG 61.252 66.667 0.00 0.00 0.00 4.45
2804 3074 4.039092 CCACAGGACAGGCAGGGG 62.039 72.222 0.00 0.00 0.00 4.79
2819 3089 2.446435 CAGGGGGTGTACAAATGGAAG 58.554 52.381 0.00 0.00 0.00 3.46
2826 3096 5.440610 GGGTGTACAAATGGAAGATCAGAT 58.559 41.667 0.00 0.00 0.00 2.90
2827 3097 6.409234 GGGGTGTACAAATGGAAGATCAGATA 60.409 42.308 0.00 0.00 0.00 1.98
2828 3098 7.227156 GGGTGTACAAATGGAAGATCAGATAT 58.773 38.462 0.00 0.00 0.00 1.63
2829 3099 7.173907 GGGTGTACAAATGGAAGATCAGATATG 59.826 40.741 0.00 0.00 0.00 1.78
2830 3100 7.308229 GGTGTACAAATGGAAGATCAGATATGC 60.308 40.741 0.00 0.00 0.00 3.14
2831 3101 6.712095 TGTACAAATGGAAGATCAGATATGCC 59.288 38.462 0.00 0.00 0.00 4.40
2832 3102 5.075493 ACAAATGGAAGATCAGATATGCCC 58.925 41.667 0.00 0.00 0.00 5.36
2833 3103 5.074804 CAAATGGAAGATCAGATATGCCCA 58.925 41.667 0.00 1.18 0.00 5.36
2834 3104 3.777106 TGGAAGATCAGATATGCCCAC 57.223 47.619 0.00 0.00 0.00 4.61
2835 3105 3.321039 TGGAAGATCAGATATGCCCACT 58.679 45.455 0.00 0.00 0.00 4.00
2836 3106 3.072038 TGGAAGATCAGATATGCCCACTG 59.928 47.826 0.00 0.00 0.00 3.66
2837 3107 3.558746 GGAAGATCAGATATGCCCACTGG 60.559 52.174 0.00 0.00 33.19 4.00
2871 3141 0.683412 ATGCTATCAGCGGCTCATCA 59.317 50.000 0.00 0.00 46.26 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.427905 GCCATGCGCGCATACATG 60.428 61.111 42.66 31.92 42.67 3.21
1 2 2.900167 CTGCCATGCGCGCATACAT 61.900 57.895 42.66 23.11 42.08 2.29
2 3 3.575400 CTGCCATGCGCGCATACA 61.575 61.111 42.66 37.27 42.08 2.29
3 4 4.969604 GCTGCCATGCGCGCATAC 62.970 66.667 42.66 35.14 42.08 2.39
17 18 2.049526 TACAGACGTGTGCCGCTG 60.050 61.111 13.35 5.34 42.51 5.18
18 19 2.049433 GTACAGACGTGTGCCGCT 60.049 61.111 13.35 0.00 41.42 5.52
19 20 2.049433 AGTACAGACGTGTGCCGC 60.049 61.111 13.35 3.19 39.98 6.53
20 21 0.318360 TTCAGTACAGACGTGTGCCG 60.318 55.000 13.35 0.00 39.98 5.69
21 22 1.137513 GTTCAGTACAGACGTGTGCC 58.862 55.000 13.35 3.65 39.98 5.01
22 23 0.776451 CGTTCAGTACAGACGTGTGC 59.224 55.000 13.35 0.00 39.46 4.57
23 24 0.776451 GCGTTCAGTACAGACGTGTG 59.224 55.000 11.72 11.72 37.52 3.82
24 25 0.382873 TGCGTTCAGTACAGACGTGT 59.617 50.000 14.29 0.00 41.06 4.49
25 26 0.776451 GTGCGTTCAGTACAGACGTG 59.224 55.000 14.29 0.00 35.42 4.49
26 27 0.659417 CGTGCGTTCAGTACAGACGT 60.659 55.000 14.29 0.00 35.00 4.34
27 28 0.385098 TCGTGCGTTCAGTACAGACG 60.385 55.000 10.20 10.20 35.00 4.18
28 29 1.050767 GTCGTGCGTTCAGTACAGAC 58.949 55.000 0.00 0.00 35.00 3.51
29 30 0.385098 CGTCGTGCGTTCAGTACAGA 60.385 55.000 0.00 0.00 35.00 3.41
30 31 0.385098 TCGTCGTGCGTTCAGTACAG 60.385 55.000 0.00 0.00 42.13 2.74
31 32 0.029167 TTCGTCGTGCGTTCAGTACA 59.971 50.000 0.00 0.00 42.13 2.90
32 33 1.122849 TTTCGTCGTGCGTTCAGTAC 58.877 50.000 0.00 0.00 42.13 2.73
33 34 2.054687 ATTTCGTCGTGCGTTCAGTA 57.945 45.000 0.00 0.00 42.13 2.74
34 35 1.717645 GTATTTCGTCGTGCGTTCAGT 59.282 47.619 0.00 0.00 42.13 3.41
35 36 1.717113 TGTATTTCGTCGTGCGTTCAG 59.283 47.619 0.00 0.00 42.13 3.02
36 37 1.717113 CTGTATTTCGTCGTGCGTTCA 59.283 47.619 0.00 0.00 42.13 3.18
37 38 1.980844 TCTGTATTTCGTCGTGCGTTC 59.019 47.619 0.00 0.00 42.13 3.95
38 39 1.983605 CTCTGTATTTCGTCGTGCGTT 59.016 47.619 0.00 0.00 42.13 4.84
39 40 1.614385 CTCTGTATTTCGTCGTGCGT 58.386 50.000 0.00 0.00 42.13 5.24
40 41 0.914551 CCTCTGTATTTCGTCGTGCG 59.085 55.000 0.00 0.00 43.01 5.34
41 42 1.992170 ACCTCTGTATTTCGTCGTGC 58.008 50.000 0.00 0.00 0.00 5.34
42 43 3.096461 CGTACCTCTGTATTTCGTCGTG 58.904 50.000 0.00 0.00 0.00 4.35
43 44 2.744202 ACGTACCTCTGTATTTCGTCGT 59.256 45.455 0.00 0.00 0.00 4.34
44 45 3.395858 ACGTACCTCTGTATTTCGTCG 57.604 47.619 0.00 0.00 0.00 5.12
45 46 5.030936 GGTTACGTACCTCTGTATTTCGTC 58.969 45.833 0.00 0.00 44.10 4.20
46 47 4.986622 GGTTACGTACCTCTGTATTTCGT 58.013 43.478 0.00 0.00 44.10 3.85
59 60 4.060205 AGTTGGTTGATGTGGTTACGTAC 58.940 43.478 0.00 0.00 0.00 3.67
60 61 4.339872 AGTTGGTTGATGTGGTTACGTA 57.660 40.909 0.00 0.00 0.00 3.57
61 62 3.202829 AGTTGGTTGATGTGGTTACGT 57.797 42.857 0.00 0.00 0.00 3.57
62 63 6.971527 TTATAGTTGGTTGATGTGGTTACG 57.028 37.500 0.00 0.00 0.00 3.18
63 64 8.024865 GGTTTTATAGTTGGTTGATGTGGTTAC 58.975 37.037 0.00 0.00 0.00 2.50
64 65 7.945664 AGGTTTTATAGTTGGTTGATGTGGTTA 59.054 33.333 0.00 0.00 0.00 2.85
65 66 6.780522 AGGTTTTATAGTTGGTTGATGTGGTT 59.219 34.615 0.00 0.00 0.00 3.67
66 67 6.311735 AGGTTTTATAGTTGGTTGATGTGGT 58.688 36.000 0.00 0.00 0.00 4.16
67 68 6.834168 AGGTTTTATAGTTGGTTGATGTGG 57.166 37.500 0.00 0.00 0.00 4.17
70 71 9.634163 GGTAAAAGGTTTTATAGTTGGTTGATG 57.366 33.333 0.00 0.00 35.35 3.07
71 72 9.596308 AGGTAAAAGGTTTTATAGTTGGTTGAT 57.404 29.630 0.00 0.00 35.35 2.57
72 73 8.999905 AGGTAAAAGGTTTTATAGTTGGTTGA 57.000 30.769 0.00 0.00 35.35 3.18
194 195 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
195 196 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
196 197 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
209 210 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
215 216 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
216 217 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
217 218 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
218 219 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
219 220 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
220 221 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
228 229 0.322975 GCCGTATGCATCTCCCAGAT 59.677 55.000 0.19 0.00 40.77 2.90
229 230 1.748403 GCCGTATGCATCTCCCAGA 59.252 57.895 0.19 0.00 40.77 3.86
230 231 1.302033 GGCCGTATGCATCTCCCAG 60.302 63.158 0.19 0.00 43.89 4.45
231 232 2.069430 TGGCCGTATGCATCTCCCA 61.069 57.895 0.19 3.16 43.89 4.37
232 233 1.598130 GTGGCCGTATGCATCTCCC 60.598 63.158 0.19 0.17 43.89 4.30
233 234 0.179045 AAGTGGCCGTATGCATCTCC 60.179 55.000 0.19 0.71 43.89 3.71
234 235 1.668419 AAAGTGGCCGTATGCATCTC 58.332 50.000 0.19 0.00 43.89 2.75
235 236 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
236 237 3.563808 TCAATAAAGTGGCCGTATGCATC 59.436 43.478 0.19 0.00 43.89 3.91
237 238 3.550820 TCAATAAAGTGGCCGTATGCAT 58.449 40.909 3.79 3.79 43.89 3.96
238 239 2.992593 TCAATAAAGTGGCCGTATGCA 58.007 42.857 0.00 0.00 43.89 3.96
239 240 4.568152 AATCAATAAAGTGGCCGTATGC 57.432 40.909 0.00 0.00 40.16 3.14
240 241 9.180678 GAAAATAATCAATAAAGTGGCCGTATG 57.819 33.333 0.00 0.00 0.00 2.39
241 242 8.908903 TGAAAATAATCAATAAAGTGGCCGTAT 58.091 29.630 0.00 0.00 0.00 3.06
242 243 8.282455 TGAAAATAATCAATAAAGTGGCCGTA 57.718 30.769 0.00 0.00 0.00 4.02
243 244 7.164230 TGAAAATAATCAATAAAGTGGCCGT 57.836 32.000 0.00 0.00 0.00 5.68
244 245 6.697019 CCTGAAAATAATCAATAAAGTGGCCG 59.303 38.462 0.00 0.00 0.00 6.13
245 246 7.706607 GTCCTGAAAATAATCAATAAAGTGGCC 59.293 37.037 0.00 0.00 0.00 5.36
246 247 7.706607 GGTCCTGAAAATAATCAATAAAGTGGC 59.293 37.037 0.00 0.00 0.00 5.01
247 248 8.971073 AGGTCCTGAAAATAATCAATAAAGTGG 58.029 33.333 0.00 0.00 0.00 4.00
255 256 9.362151 ACTTTGTAAGGTCCTGAAAATAATCAA 57.638 29.630 0.00 0.00 0.00 2.57
256 257 8.934023 ACTTTGTAAGGTCCTGAAAATAATCA 57.066 30.769 0.00 0.00 0.00 2.57
261 262 9.802039 TGTAATACTTTGTAAGGTCCTGAAAAT 57.198 29.630 0.00 0.00 0.00 1.82
262 263 9.629878 TTGTAATACTTTGTAAGGTCCTGAAAA 57.370 29.630 0.00 0.00 0.00 2.29
263 264 9.059260 GTTGTAATACTTTGTAAGGTCCTGAAA 57.941 33.333 0.00 0.00 0.00 2.69
264 265 8.212312 TGTTGTAATACTTTGTAAGGTCCTGAA 58.788 33.333 0.00 0.00 0.00 3.02
265 266 7.737869 TGTTGTAATACTTTGTAAGGTCCTGA 58.262 34.615 0.00 0.00 0.00 3.86
266 267 7.972832 TGTTGTAATACTTTGTAAGGTCCTG 57.027 36.000 0.00 0.00 0.00 3.86
267 268 9.010029 CATTGTTGTAATACTTTGTAAGGTCCT 57.990 33.333 0.00 0.00 0.00 3.85
268 269 9.005777 TCATTGTTGTAATACTTTGTAAGGTCC 57.994 33.333 0.00 0.00 0.00 4.46
270 271 8.512138 GCTCATTGTTGTAATACTTTGTAAGGT 58.488 33.333 0.00 0.00 0.00 3.50
271 272 7.968405 GGCTCATTGTTGTAATACTTTGTAAGG 59.032 37.037 0.00 0.00 0.00 2.69
272 273 8.730680 AGGCTCATTGTTGTAATACTTTGTAAG 58.269 33.333 0.00 0.00 0.00 2.34
273 274 8.511321 CAGGCTCATTGTTGTAATACTTTGTAA 58.489 33.333 0.00 0.00 0.00 2.41
274 275 7.880713 TCAGGCTCATTGTTGTAATACTTTGTA 59.119 33.333 0.00 0.00 0.00 2.41
275 276 6.714810 TCAGGCTCATTGTTGTAATACTTTGT 59.285 34.615 0.00 0.00 0.00 2.83
276 277 7.144722 TCAGGCTCATTGTTGTAATACTTTG 57.855 36.000 0.00 0.00 0.00 2.77
277 278 7.759489 TTCAGGCTCATTGTTGTAATACTTT 57.241 32.000 0.00 0.00 0.00 2.66
278 279 7.067494 GGATTCAGGCTCATTGTTGTAATACTT 59.933 37.037 0.00 0.00 0.00 2.24
279 280 6.543831 GGATTCAGGCTCATTGTTGTAATACT 59.456 38.462 0.00 0.00 0.00 2.12
280 281 6.318648 TGGATTCAGGCTCATTGTTGTAATAC 59.681 38.462 0.00 0.00 0.00 1.89
281 282 6.318648 GTGGATTCAGGCTCATTGTTGTAATA 59.681 38.462 0.00 0.00 0.00 0.98
282 283 5.126061 GTGGATTCAGGCTCATTGTTGTAAT 59.874 40.000 0.00 0.00 0.00 1.89
283 284 4.458989 GTGGATTCAGGCTCATTGTTGTAA 59.541 41.667 0.00 0.00 0.00 2.41
284 285 4.009675 GTGGATTCAGGCTCATTGTTGTA 58.990 43.478 0.00 0.00 0.00 2.41
285 286 2.821969 GTGGATTCAGGCTCATTGTTGT 59.178 45.455 0.00 0.00 0.00 3.32
286 287 2.165030 GGTGGATTCAGGCTCATTGTTG 59.835 50.000 0.00 0.00 0.00 3.33
287 288 2.225091 TGGTGGATTCAGGCTCATTGTT 60.225 45.455 0.00 0.00 0.00 2.83
288 289 1.355381 TGGTGGATTCAGGCTCATTGT 59.645 47.619 0.00 0.00 0.00 2.71
289 290 2.133281 TGGTGGATTCAGGCTCATTG 57.867 50.000 0.00 0.00 0.00 2.82
290 291 2.512896 AGATGGTGGATTCAGGCTCATT 59.487 45.455 0.00 0.00 0.00 2.57
291 292 2.133520 AGATGGTGGATTCAGGCTCAT 58.866 47.619 0.00 0.00 0.00 2.90
292 293 1.588239 AGATGGTGGATTCAGGCTCA 58.412 50.000 0.00 0.00 0.00 4.26
293 294 2.092753 TCAAGATGGTGGATTCAGGCTC 60.093 50.000 0.00 0.00 0.00 4.70
294 295 1.918262 TCAAGATGGTGGATTCAGGCT 59.082 47.619 0.00 0.00 0.00 4.58
295 296 2.019984 GTCAAGATGGTGGATTCAGGC 58.980 52.381 0.00 0.00 0.00 4.85
296 297 3.354948 TGTCAAGATGGTGGATTCAGG 57.645 47.619 0.00 0.00 0.00 3.86
297 298 4.074259 TGTTGTCAAGATGGTGGATTCAG 58.926 43.478 0.00 0.00 0.00 3.02
298 299 3.820467 GTGTTGTCAAGATGGTGGATTCA 59.180 43.478 0.00 0.00 0.00 2.57
299 300 3.820467 TGTGTTGTCAAGATGGTGGATTC 59.180 43.478 0.00 0.00 0.00 2.52
300 301 3.831323 TGTGTTGTCAAGATGGTGGATT 58.169 40.909 0.00 0.00 0.00 3.01
301 302 3.507162 TGTGTTGTCAAGATGGTGGAT 57.493 42.857 0.00 0.00 0.00 3.41
302 303 3.148412 CATGTGTTGTCAAGATGGTGGA 58.852 45.455 0.00 0.00 0.00 4.02
303 304 2.352030 GCATGTGTTGTCAAGATGGTGG 60.352 50.000 0.00 0.00 0.00 4.61
304 305 2.352030 GGCATGTGTTGTCAAGATGGTG 60.352 50.000 0.00 0.00 0.00 4.17
305 306 1.888512 GGCATGTGTTGTCAAGATGGT 59.111 47.619 0.00 0.00 0.00 3.55
306 307 1.135603 CGGCATGTGTTGTCAAGATGG 60.136 52.381 0.00 0.00 0.00 3.51
307 308 1.730121 GCGGCATGTGTTGTCAAGATG 60.730 52.381 0.00 0.00 0.00 2.90
308 309 0.523072 GCGGCATGTGTTGTCAAGAT 59.477 50.000 0.00 0.00 0.00 2.40
309 310 0.534877 AGCGGCATGTGTTGTCAAGA 60.535 50.000 1.45 0.00 0.00 3.02
310 311 1.135972 GTAGCGGCATGTGTTGTCAAG 60.136 52.381 1.45 0.00 0.00 3.02
311 312 0.871722 GTAGCGGCATGTGTTGTCAA 59.128 50.000 1.45 0.00 0.00 3.18
312 313 0.034756 AGTAGCGGCATGTGTTGTCA 59.965 50.000 1.45 0.00 0.00 3.58
313 314 0.721718 GAGTAGCGGCATGTGTTGTC 59.278 55.000 1.45 0.00 0.00 3.18
314 315 0.673644 GGAGTAGCGGCATGTGTTGT 60.674 55.000 1.45 0.00 0.00 3.32
315 316 0.391661 AGGAGTAGCGGCATGTGTTG 60.392 55.000 1.45 0.00 0.00 3.33
316 317 1.191535 TAGGAGTAGCGGCATGTGTT 58.808 50.000 1.45 0.00 0.00 3.32
317 318 1.341531 GATAGGAGTAGCGGCATGTGT 59.658 52.381 1.45 0.00 0.00 3.72
318 319 1.337260 GGATAGGAGTAGCGGCATGTG 60.337 57.143 1.45 0.00 0.00 3.21
319 320 0.969894 GGATAGGAGTAGCGGCATGT 59.030 55.000 1.45 0.00 0.00 3.21
320 321 0.969149 TGGATAGGAGTAGCGGCATG 59.031 55.000 1.45 0.00 0.00 4.06
321 322 1.717032 TTGGATAGGAGTAGCGGCAT 58.283 50.000 1.45 0.00 0.00 4.40
322 323 1.491668 TTTGGATAGGAGTAGCGGCA 58.508 50.000 1.45 0.00 0.00 5.69
323 324 2.614829 TTTTGGATAGGAGTAGCGGC 57.385 50.000 0.00 0.00 0.00 6.53
324 325 6.522054 TCTTTATTTTGGATAGGAGTAGCGG 58.478 40.000 0.00 0.00 0.00 5.52
325 326 9.141400 GTATCTTTATTTTGGATAGGAGTAGCG 57.859 37.037 0.00 0.00 0.00 4.26
326 327 9.998106 TGTATCTTTATTTTGGATAGGAGTAGC 57.002 33.333 0.00 0.00 0.00 3.58
383 386 3.678072 GTGCGTTAGATTTCTGTACAGCA 59.322 43.478 18.45 4.20 0.00 4.41
384 387 3.678072 TGTGCGTTAGATTTCTGTACAGC 59.322 43.478 18.45 4.04 0.00 4.40
387 390 6.355638 GCATATGTGCGTTAGATTTCTGTAC 58.644 40.000 4.29 0.00 42.28 2.90
407 410 5.898535 TCACAAGTGACTGCGTGTGCATA 62.899 47.826 10.26 0.00 44.48 3.14
426 429 3.442273 AGGAGACTCGATCAGAACTTCAC 59.558 47.826 0.00 0.00 32.90 3.18
427 430 3.691575 AGGAGACTCGATCAGAACTTCA 58.308 45.455 0.00 0.00 32.90 3.02
452 455 2.025226 TCCTACTACCCTGTGGAGACTG 60.025 54.545 0.00 0.00 34.81 3.51
453 456 2.242708 CTCCTACTACCCTGTGGAGACT 59.757 54.545 0.00 0.00 45.07 3.24
454 457 2.657143 CTCCTACTACCCTGTGGAGAC 58.343 57.143 0.00 0.00 45.07 3.36
457 460 0.395311 CGCTCCTACTACCCTGTGGA 60.395 60.000 0.00 0.00 34.81 4.02
458 461 0.683504 ACGCTCCTACTACCCTGTGG 60.684 60.000 0.00 0.00 37.80 4.17
459 462 0.456221 CACGCTCCTACTACCCTGTG 59.544 60.000 0.00 0.00 0.00 3.66
460 463 0.039326 ACACGCTCCTACTACCCTGT 59.961 55.000 0.00 0.00 0.00 4.00
461 464 0.456221 CACACGCTCCTACTACCCTG 59.544 60.000 0.00 0.00 0.00 4.45
462 465 0.039326 ACACACGCTCCTACTACCCT 59.961 55.000 0.00 0.00 0.00 4.34
463 466 0.893447 AACACACGCTCCTACTACCC 59.107 55.000 0.00 0.00 0.00 3.69
464 467 1.403780 CCAACACACGCTCCTACTACC 60.404 57.143 0.00 0.00 0.00 3.18
465 468 1.992170 CCAACACACGCTCCTACTAC 58.008 55.000 0.00 0.00 0.00 2.73
466 469 0.245539 GCCAACACACGCTCCTACTA 59.754 55.000 0.00 0.00 0.00 1.82
467 470 1.004918 GCCAACACACGCTCCTACT 60.005 57.895 0.00 0.00 0.00 2.57
506 515 0.457166 CAAGCATGTTGCCGTGATGG 60.457 55.000 0.00 0.00 46.52 3.51
508 517 0.523072 GTCAAGCATGTTGCCGTGAT 59.477 50.000 6.72 0.00 46.52 3.06
509 518 0.817229 TGTCAAGCATGTTGCCGTGA 60.817 50.000 0.00 0.00 46.52 4.35
520 530 1.227527 CTCCACGTGGTGTCAAGCA 60.228 57.895 32.74 11.25 36.34 3.91
521 531 1.961277 CCTCCACGTGGTGTCAAGC 60.961 63.158 32.74 0.00 36.34 4.01
524 534 3.157949 TGCCTCCACGTGGTGTCA 61.158 61.111 32.74 24.28 36.34 3.58
588 601 4.314440 ACTCGGCCTTTGCTGCGA 62.314 61.111 0.00 0.00 43.94 5.10
602 615 1.198637 GTGGTGCTGAATTGCTGACTC 59.801 52.381 0.00 0.00 0.00 3.36
621 634 5.104569 GGAAGAAGATGAAGATGAGAAGGGT 60.105 44.000 0.00 0.00 0.00 4.34
624 637 6.982141 CAGAGGAAGAAGATGAAGATGAGAAG 59.018 42.308 0.00 0.00 0.00 2.85
668 695 4.823989 CCTTTTTATAGCCTCCACCATCTG 59.176 45.833 0.00 0.00 0.00 2.90
669 696 4.141158 CCCTTTTTATAGCCTCCACCATCT 60.141 45.833 0.00 0.00 0.00 2.90
670 697 4.141251 TCCCTTTTTATAGCCTCCACCATC 60.141 45.833 0.00 0.00 0.00 3.51
671 698 3.791545 TCCCTTTTTATAGCCTCCACCAT 59.208 43.478 0.00 0.00 0.00 3.55
702 731 1.556911 GTGGTGTGGTGATGAGAGGAT 59.443 52.381 0.00 0.00 0.00 3.24
710 739 0.694771 ATCAGCTGTGGTGTGGTGAT 59.305 50.000 14.67 0.00 43.71 3.06
713 742 0.322975 GAGATCAGCTGTGGTGTGGT 59.677 55.000 14.67 0.00 32.43 4.16
732 773 0.949588 CTCTGCTGTGCTGTGGACTG 60.950 60.000 0.00 0.00 0.00 3.51
752 798 5.352569 CGTTGAGTAGAATGGAAGAATGCTT 59.647 40.000 0.00 0.00 36.96 3.91
755 801 4.631377 TGCGTTGAGTAGAATGGAAGAATG 59.369 41.667 0.00 0.00 0.00 2.67
756 802 4.832248 TGCGTTGAGTAGAATGGAAGAAT 58.168 39.130 0.00 0.00 0.00 2.40
757 803 4.265904 TGCGTTGAGTAGAATGGAAGAA 57.734 40.909 0.00 0.00 0.00 2.52
792 848 0.720173 GCAACGAAGCAAACGTACCG 60.720 55.000 0.00 0.00 43.16 4.02
823 881 1.334384 GGGAAGAGCAGGAGGAGGTC 61.334 65.000 0.00 0.00 0.00 3.85
824 882 1.306568 GGGAAGAGCAGGAGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
845 914 2.374830 CTGGCCGGAGCAGAGTATGG 62.375 65.000 5.28 0.00 42.56 2.74
873 942 4.016706 CTCCCTTCCGGCGGTGTT 62.017 66.667 27.32 0.00 0.00 3.32
884 953 2.948720 GCGAGCTCACCACTCCCTT 61.949 63.158 15.40 0.00 0.00 3.95
894 964 2.903357 GATCTTGGGGCGAGCTCA 59.097 61.111 15.40 0.00 0.00 4.26
898 968 1.227089 CAGTCGATCTTGGGGCGAG 60.227 63.158 0.00 0.00 34.41 5.03
952 1022 1.728778 CGCTCGATCTGATCTGCGG 60.729 63.158 29.60 19.00 42.09 5.69
978 1058 3.585990 GGGATGGATGTTGCGGCG 61.586 66.667 0.51 0.51 0.00 6.46
1795 1990 1.653151 GAGAATCGAAAACCGGGGAG 58.347 55.000 6.32 0.00 39.14 4.30
1824 2020 8.168790 TCATCAGTTCAATTTCTCATGTTTCA 57.831 30.769 0.00 0.00 0.00 2.69
1831 2027 8.570068 TCATCATTCATCAGTTCAATTTCTCA 57.430 30.769 0.00 0.00 0.00 3.27
1835 2031 9.366216 CAACATCATCATTCATCAGTTCAATTT 57.634 29.630 0.00 0.00 0.00 1.82
1846 2071 8.731275 AAAAATCATGCAACATCATCATTCAT 57.269 26.923 0.00 0.00 0.00 2.57
1847 2072 7.279090 GGAAAAATCATGCAACATCATCATTCA 59.721 33.333 0.00 0.00 0.00 2.57
1848 2073 7.494625 AGGAAAAATCATGCAACATCATCATTC 59.505 33.333 0.00 0.00 0.00 2.67
1849 2074 7.335627 AGGAAAAATCATGCAACATCATCATT 58.664 30.769 0.00 0.00 0.00 2.57
1857 2082 5.759273 CCTGAAAAGGAAAAATCATGCAACA 59.241 36.000 0.00 0.00 0.00 3.33
1978 2207 4.286101 TGTATGTAACGTTTCGACACGAA 58.714 39.130 28.95 14.30 44.28 3.85
1988 2217 8.185505 ACACAAAACAAGAATGTATGTAACGTT 58.814 29.630 5.88 5.88 39.40 3.99
1990 2219 8.555166 AACACAAAACAAGAATGTATGTAACG 57.445 30.769 0.00 0.00 39.40 3.18
1992 2221 9.953697 GGTAACACAAAACAAGAATGTATGTAA 57.046 29.630 0.00 0.00 39.40 2.41
2099 2361 0.975887 TTGGGAAAAGAATGCCCTGC 59.024 50.000 0.00 0.00 42.52 4.85
2135 2397 7.064866 TCTCATATTCATTCAGCCAGGAAATT 58.935 34.615 0.00 0.00 0.00 1.82
2176 2438 1.134907 GCAGAGATTTGCAATGTGGGG 60.135 52.381 0.00 0.00 43.53 4.96
2180 2442 4.438336 CGATTCAGCAGAGATTTGCAATGT 60.438 41.667 0.00 0.00 46.47 2.71
2182 2444 3.693085 ACGATTCAGCAGAGATTTGCAAT 59.307 39.130 0.00 0.00 46.47 3.56
2221 2490 2.537863 GCACTCAGCAGTTCAGTCC 58.462 57.895 0.00 0.00 44.79 3.85
2258 2527 1.204146 TGGTGAGGTGATTCTAGGCC 58.796 55.000 0.00 0.00 0.00 5.19
2337 2607 4.963628 AGAGGGAGTAGTTGATTAAGGGAC 59.036 45.833 0.00 0.00 0.00 4.46
2344 2614 4.841246 AGTGAACAGAGGGAGTAGTTGATT 59.159 41.667 0.00 0.00 0.00 2.57
2351 2621 7.580882 GCCTTATAAAAGTGAACAGAGGGAGTA 60.581 40.741 0.00 0.00 0.00 2.59
2352 2622 6.712276 CCTTATAAAAGTGAACAGAGGGAGT 58.288 40.000 0.00 0.00 0.00 3.85
2353 2623 5.586643 GCCTTATAAAAGTGAACAGAGGGAG 59.413 44.000 0.00 0.00 0.00 4.30
2354 2624 5.250774 AGCCTTATAAAAGTGAACAGAGGGA 59.749 40.000 0.00 0.00 0.00 4.20
2355 2625 5.501156 AGCCTTATAAAAGTGAACAGAGGG 58.499 41.667 0.00 0.00 0.00 4.30
2356 2626 7.040409 ACAAAGCCTTATAAAAGTGAACAGAGG 60.040 37.037 0.00 0.00 0.00 3.69
2357 2627 7.875971 ACAAAGCCTTATAAAAGTGAACAGAG 58.124 34.615 0.00 0.00 0.00 3.35
2358 2628 7.817418 ACAAAGCCTTATAAAAGTGAACAGA 57.183 32.000 0.00 0.00 0.00 3.41
2359 2629 8.999431 TCTACAAAGCCTTATAAAAGTGAACAG 58.001 33.333 0.00 0.00 0.00 3.16
2360 2630 8.911918 TCTACAAAGCCTTATAAAAGTGAACA 57.088 30.769 0.00 0.00 0.00 3.18
2361 2631 9.774742 CATCTACAAAGCCTTATAAAAGTGAAC 57.225 33.333 0.00 0.00 0.00 3.18
2362 2632 9.515226 ACATCTACAAAGCCTTATAAAAGTGAA 57.485 29.630 0.00 0.00 0.00 3.18
2363 2633 9.515226 AACATCTACAAAGCCTTATAAAAGTGA 57.485 29.630 0.00 0.00 0.00 3.41
2368 2638 9.733556 TCTGAAACATCTACAAAGCCTTATAAA 57.266 29.630 0.00 0.00 0.00 1.40
2369 2639 9.162764 GTCTGAAACATCTACAAAGCCTTATAA 57.837 33.333 0.00 0.00 0.00 0.98
2370 2640 8.318412 TGTCTGAAACATCTACAAAGCCTTATA 58.682 33.333 0.00 0.00 31.20 0.98
2371 2641 7.168219 TGTCTGAAACATCTACAAAGCCTTAT 58.832 34.615 0.00 0.00 31.20 1.73
2372 2642 6.530120 TGTCTGAAACATCTACAAAGCCTTA 58.470 36.000 0.00 0.00 31.20 2.69
2373 2643 5.376625 TGTCTGAAACATCTACAAAGCCTT 58.623 37.500 0.00 0.00 31.20 4.35
2374 2644 4.973168 TGTCTGAAACATCTACAAAGCCT 58.027 39.130 0.00 0.00 31.20 4.58
2375 2645 5.886960 ATGTCTGAAACATCTACAAAGCC 57.113 39.130 0.00 0.00 45.78 4.35
2385 2655 7.738950 AGCTATTTTGCACAATGTCTGAAACAT 60.739 33.333 8.36 0.00 42.06 2.71
2386 2656 5.691305 GCTATTTTGCACAATGTCTGAAACA 59.309 36.000 8.36 0.00 43.51 2.83
2387 2657 5.922544 AGCTATTTTGCACAATGTCTGAAAC 59.077 36.000 8.36 0.00 34.99 2.78
2388 2658 6.088016 AGCTATTTTGCACAATGTCTGAAA 57.912 33.333 8.36 0.00 34.99 2.69
2389 2659 5.241285 TGAGCTATTTTGCACAATGTCTGAA 59.759 36.000 8.36 0.00 31.14 3.02
2390 2660 4.761227 TGAGCTATTTTGCACAATGTCTGA 59.239 37.500 8.36 0.00 31.14 3.27
2391 2661 5.050644 TGAGCTATTTTGCACAATGTCTG 57.949 39.130 8.36 0.00 31.14 3.51
2392 2662 5.710513 TTGAGCTATTTTGCACAATGTCT 57.289 34.783 8.36 4.97 38.28 3.41
2397 2667 6.514947 AGTGAAATTGAGCTATTTTGCACAA 58.485 32.000 13.00 0.00 44.68 3.33
2398 2668 6.088016 AGTGAAATTGAGCTATTTTGCACA 57.912 33.333 13.00 0.00 34.99 4.57
2399 2669 6.421801 ACAAGTGAAATTGAGCTATTTTGCAC 59.578 34.615 5.39 5.39 34.20 4.57
2400 2670 6.514947 ACAAGTGAAATTGAGCTATTTTGCA 58.485 32.000 0.00 0.00 34.20 4.08
2401 2671 6.865205 AGACAAGTGAAATTGAGCTATTTTGC 59.135 34.615 0.00 0.00 34.20 3.68
2402 2672 8.077991 TCAGACAAGTGAAATTGAGCTATTTTG 58.922 33.333 0.00 0.00 34.20 2.44
2403 2673 8.169977 TCAGACAAGTGAAATTGAGCTATTTT 57.830 30.769 0.00 0.00 34.20 1.82
2404 2674 7.750229 TCAGACAAGTGAAATTGAGCTATTT 57.250 32.000 0.00 0.00 34.20 1.40
2405 2675 7.750229 TTCAGACAAGTGAAATTGAGCTATT 57.250 32.000 0.00 0.00 33.41 1.73
2406 2676 7.571983 CGTTTCAGACAAGTGAAATTGAGCTAT 60.572 37.037 2.59 0.00 45.71 2.97
2407 2677 6.292865 CGTTTCAGACAAGTGAAATTGAGCTA 60.293 38.462 2.59 0.00 45.71 3.32
2408 2678 5.504665 CGTTTCAGACAAGTGAAATTGAGCT 60.505 40.000 2.59 0.00 45.71 4.09
2409 2679 4.672413 CGTTTCAGACAAGTGAAATTGAGC 59.328 41.667 2.59 0.00 45.71 4.26
2410 2680 5.904080 GTCGTTTCAGACAAGTGAAATTGAG 59.096 40.000 2.59 0.00 45.71 3.02
2411 2681 5.584649 AGTCGTTTCAGACAAGTGAAATTGA 59.415 36.000 2.59 2.32 45.71 2.57
2412 2682 5.810525 AGTCGTTTCAGACAAGTGAAATTG 58.189 37.500 2.59 0.24 45.71 2.32
2413 2683 6.436843 AAGTCGTTTCAGACAAGTGAAATT 57.563 33.333 2.59 0.00 45.71 1.82
2414 2684 7.730364 ATAAGTCGTTTCAGACAAGTGAAAT 57.270 32.000 2.59 0.00 45.71 2.17
2415 2685 8.651391 TTATAAGTCGTTTCAGACAAGTGAAA 57.349 30.769 0.00 0.00 42.79 2.69
2416 2686 8.651391 TTTATAAGTCGTTTCAGACAAGTGAA 57.349 30.769 0.00 0.00 43.24 3.18
2417 2687 8.651391 TTTTATAAGTCGTTTCAGACAAGTGA 57.349 30.769 0.00 0.00 43.24 3.41
2418 2688 8.548721 ACTTTTATAAGTCGTTTCAGACAAGTG 58.451 33.333 0.00 0.00 40.60 3.16
2419 2689 8.548721 CACTTTTATAAGTCGTTTCAGACAAGT 58.451 33.333 0.00 0.00 42.67 3.16
2420 2690 8.761497 TCACTTTTATAAGTCGTTTCAGACAAG 58.239 33.333 0.00 0.00 42.67 3.16
2421 2691 8.651391 TCACTTTTATAAGTCGTTTCAGACAA 57.349 30.769 0.00 0.00 42.67 3.18
2422 2692 8.545420 GTTCACTTTTATAAGTCGTTTCAGACA 58.455 33.333 0.00 0.00 42.67 3.41
2423 2693 7.734726 CGTTCACTTTTATAAGTCGTTTCAGAC 59.265 37.037 0.00 0.00 42.67 3.51
2424 2694 7.095940 CCGTTCACTTTTATAAGTCGTTTCAGA 60.096 37.037 0.00 0.00 42.67 3.27
2425 2695 7.007697 CCGTTCACTTTTATAAGTCGTTTCAG 58.992 38.462 0.00 0.00 42.67 3.02
2426 2696 6.073657 CCCGTTCACTTTTATAAGTCGTTTCA 60.074 38.462 0.00 0.00 42.67 2.69
2427 2697 6.301861 CCCGTTCACTTTTATAAGTCGTTTC 58.698 40.000 0.00 0.00 42.67 2.78
2428 2698 5.179929 CCCCGTTCACTTTTATAAGTCGTTT 59.820 40.000 0.00 0.00 42.67 3.60
2429 2699 4.692155 CCCCGTTCACTTTTATAAGTCGTT 59.308 41.667 0.00 0.00 42.67 3.85
2430 2700 4.248058 CCCCGTTCACTTTTATAAGTCGT 58.752 43.478 0.00 0.00 42.67 4.34
2431 2701 3.619929 CCCCCGTTCACTTTTATAAGTCG 59.380 47.826 0.00 0.00 42.67 4.18
2450 2720 7.287810 ACAAAATACACTTATCATACTCCCCC 58.712 38.462 0.00 0.00 0.00 5.40
2451 2721 8.747538 AACAAAATACACTTATCATACTCCCC 57.252 34.615 0.00 0.00 0.00 4.81
2580 2850 1.068741 ACGCGTCCTTCTCTTTTCTGT 59.931 47.619 5.58 0.00 0.00 3.41
2609 2879 3.132111 TGAGCAATGCCTGTAACTCGATA 59.868 43.478 0.00 0.00 0.00 2.92
2611 2881 1.275010 TGAGCAATGCCTGTAACTCGA 59.725 47.619 0.00 0.00 0.00 4.04
2613 2883 4.156556 TGAAATGAGCAATGCCTGTAACTC 59.843 41.667 0.00 0.00 0.00 3.01
2617 2887 2.754552 GGTGAAATGAGCAATGCCTGTA 59.245 45.455 0.00 0.00 0.00 2.74
2645 2915 6.472163 GGACGGTTCATTTATTTTACTGCATG 59.528 38.462 0.00 0.00 0.00 4.06
2646 2916 6.405397 GGGACGGTTCATTTATTTTACTGCAT 60.405 38.462 0.00 0.00 0.00 3.96
2647 2917 5.106078 GGGACGGTTCATTTATTTTACTGCA 60.106 40.000 0.00 0.00 0.00 4.41
2667 2937 4.208686 CAGCTACGGCGAGGGGAC 62.209 72.222 16.62 0.00 44.37 4.46
2671 2941 3.417275 CTGACCAGCTACGGCGAGG 62.417 68.421 16.62 9.67 44.37 4.63
2712 2982 7.709947 TCTATGACTTGATGGCATGAAATTTC 58.290 34.615 3.81 11.41 45.61 2.17
2714 2984 7.308408 CGATCTATGACTTGATGGCATGAAATT 60.308 37.037 3.81 0.00 45.61 1.82
2775 3045 0.681733 TCCTGTGGTCAAGAGCAGAC 59.318 55.000 1.67 0.00 39.74 3.51
2794 3064 1.357272 TTTGTACACCCCCTGCCTGT 61.357 55.000 0.00 0.00 0.00 4.00
2795 3065 0.039618 ATTTGTACACCCCCTGCCTG 59.960 55.000 0.00 0.00 0.00 4.85
2796 3066 0.039618 CATTTGTACACCCCCTGCCT 59.960 55.000 0.00 0.00 0.00 4.75
2797 3067 0.970427 CCATTTGTACACCCCCTGCC 60.970 60.000 0.00 0.00 0.00 4.85
2798 3068 0.039035 TCCATTTGTACACCCCCTGC 59.961 55.000 0.00 0.00 0.00 4.85
2799 3069 2.041081 TCTTCCATTTGTACACCCCCTG 59.959 50.000 0.00 0.00 0.00 4.45
2800 3070 2.354328 TCTTCCATTTGTACACCCCCT 58.646 47.619 0.00 0.00 0.00 4.79
2801 3071 2.891191 TCTTCCATTTGTACACCCCC 57.109 50.000 0.00 0.00 0.00 5.40
2802 3072 3.947834 CTGATCTTCCATTTGTACACCCC 59.052 47.826 0.00 0.00 0.00 4.95
2803 3073 4.843728 TCTGATCTTCCATTTGTACACCC 58.156 43.478 0.00 0.00 0.00 4.61
2804 3074 7.308229 GCATATCTGATCTTCCATTTGTACACC 60.308 40.741 0.00 0.00 0.00 4.16
2819 3089 4.223700 TGATACCAGTGGGCATATCTGATC 59.776 45.833 15.21 2.86 37.90 2.92
2826 3096 4.904853 TCTATGTTGATACCAGTGGGCATA 59.095 41.667 15.21 10.39 37.90 3.14
2827 3097 3.716353 TCTATGTTGATACCAGTGGGCAT 59.284 43.478 15.21 6.15 37.90 4.40
2828 3098 3.111484 TCTATGTTGATACCAGTGGGCA 58.889 45.455 15.21 5.81 37.90 5.36
2829 3099 3.838244 TCTATGTTGATACCAGTGGGC 57.162 47.619 15.21 2.93 37.90 5.36
2830 3100 6.460123 GCATTTTCTATGTTGATACCAGTGGG 60.460 42.308 15.21 0.00 41.29 4.61
2831 3101 6.319658 AGCATTTTCTATGTTGATACCAGTGG 59.680 38.462 7.91 7.91 0.00 4.00
2832 3102 7.325660 AGCATTTTCTATGTTGATACCAGTG 57.674 36.000 0.00 0.00 0.00 3.66
2833 3103 9.277783 GATAGCATTTTCTATGTTGATACCAGT 57.722 33.333 0.00 0.00 29.93 4.00
2834 3104 9.276590 TGATAGCATTTTCTATGTTGATACCAG 57.723 33.333 0.00 0.00 29.93 4.00
2835 3105 9.276590 CTGATAGCATTTTCTATGTTGATACCA 57.723 33.333 0.00 0.00 29.93 3.25
2836 3106 8.233190 GCTGATAGCATTTTCTATGTTGATACC 58.767 37.037 0.00 0.00 41.89 2.73
2837 3107 7.954248 CGCTGATAGCATTTTCTATGTTGATAC 59.046 37.037 1.45 0.00 42.58 2.24
2871 3141 3.196469 TCGCAGAGGACAAAAGAGATGAT 59.804 43.478 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.