Multiple sequence alignment - TraesCS3A01G533900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G533900 chr3A 100.000 2094 0 0 1 2094 746205914 746203821 0.000000e+00 3868.0
1 TraesCS3A01G533900 chr3A 100.000 1118 0 0 2377 3494 746203538 746202421 0.000000e+00 2065.0
2 TraesCS3A01G533900 chr3D 92.411 1120 72 11 2377 3494 611305661 611306769 0.000000e+00 1585.0
3 TraesCS3A01G533900 chr3D 86.772 567 33 13 703 1238 611303912 611304467 8.350000e-166 593.0
4 TraesCS3A01G533900 chr3D 86.176 557 52 15 1396 1940 611304813 611305356 2.340000e-161 579.0
5 TraesCS3A01G533900 chr3D 89.778 225 19 3 292 514 611303252 611303474 5.710000e-73 285.0
6 TraesCS3A01G533900 chr3D 90.291 103 6 3 1299 1401 611304682 611304780 7.870000e-27 132.0
7 TraesCS3A01G533900 chr3D 90.000 50 5 0 2014 2063 611305479 611305528 8.100000e-07 65.8
8 TraesCS3A01G533900 chr3B 91.503 1118 70 14 2382 3494 829055491 829056588 0.000000e+00 1515.0
9 TraesCS3A01G533900 chr3B 85.524 525 34 11 748 1238 829054044 829054560 8.650000e-141 510.0
10 TraesCS3A01G533900 chr3B 92.218 257 14 5 1396 1651 829054888 829055139 3.320000e-95 359.0
11 TraesCS3A01G533900 chr3B 87.903 248 27 3 1699 1944 829055223 829055469 4.410000e-74 289.0
12 TraesCS3A01G533900 chr3B 90.411 73 4 2 1278 1350 829054737 829054806 3.710000e-15 93.5
13 TraesCS3A01G533900 chr7D 79.202 351 63 7 2436 2784 135350158 135350500 5.830000e-58 235.0
14 TraesCS3A01G533900 chr7D 89.362 141 15 0 995 1135 135348628 135348768 9.970000e-41 178.0
15 TraesCS3A01G533900 chr7D 86.207 145 17 2 994 1135 30845070 30844926 1.680000e-33 154.0
16 TraesCS3A01G533900 chr7B 78.873 355 57 13 2436 2784 97183668 97184010 1.260000e-54 224.0
17 TraesCS3A01G533900 chr7B 88.652 141 16 0 995 1135 97182118 97182258 4.640000e-39 172.0
18 TraesCS3A01G533900 chr7A 88.652 141 16 0 995 1135 134481530 134481670 4.640000e-39 172.0
19 TraesCS3A01G533900 chr7A 84.828 145 19 2 994 1135 31107387 31107243 3.640000e-30 143.0
20 TraesCS3A01G533900 chr5D 84.091 132 18 1 998 1126 538417273 538417142 1.320000e-24 124.0
21 TraesCS3A01G533900 chr4A 84.091 132 18 1 998 1126 630878091 630877960 1.320000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G533900 chr3A 746202421 746205914 3493 True 2966.500000 3868 100.0000 1 3494 2 chr3A.!!$R1 3493
1 TraesCS3A01G533900 chr3D 611303252 611306769 3517 False 539.966667 1585 89.2380 292 3494 6 chr3D.!!$F1 3202
2 TraesCS3A01G533900 chr3B 829054044 829056588 2544 False 553.300000 1515 89.5118 748 3494 5 chr3B.!!$F1 2746
3 TraesCS3A01G533900 chr7D 135348628 135350500 1872 False 206.500000 235 84.2820 995 2784 2 chr7D.!!$F1 1789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.040646 TAAGCTCCTTCGACCCTCCA 59.959 55.0 0.00 0.00 0.00 3.86 F
97 98 0.105593 TTGGCTGATCGAGATGCCTC 59.894 55.0 20.71 1.30 45.11 4.70 F
122 123 0.179108 CGGGGAGGTAAGCTCTTTCG 60.179 60.0 0.00 0.00 0.00 3.46 F
1748 2511 0.185175 TCTGCCGGCTGTATCTCCTA 59.815 55.0 29.70 5.42 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 2007 0.046242 TGGAGAGGAATGATGGGGGT 59.954 55.0 0.0 0.0 0.00 4.95 R
1696 2459 0.244721 GCCCTGTCAGCAATCCAAAC 59.755 55.0 0.0 0.0 0.00 2.93 R
1778 2541 0.663688 CATACTCGTCACCCTCCTCG 59.336 60.0 0.0 0.0 0.00 4.63 R
3188 4339 1.017387 GCTATGTAAGTGCTGGTGGC 58.983 55.0 0.0 0.0 42.22 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.278206 CGAGATGCCTCCACGTCG 60.278 66.667 0.00 0.00 36.04 5.12
18 19 2.761195 CGAGATGCCTCCACGTCGA 61.761 63.158 0.00 0.00 36.04 4.20
19 20 1.064946 GAGATGCCTCCACGTCGAG 59.935 63.158 2.84 2.84 33.30 4.04
25 26 2.361357 CTCCACGTCGAGGGAGGT 60.361 66.667 22.01 0.00 45.62 3.85
26 27 1.077930 CTCCACGTCGAGGGAGGTA 60.078 63.158 22.01 5.72 45.62 3.08
27 28 0.679002 CTCCACGTCGAGGGAGGTAA 60.679 60.000 22.01 0.00 45.62 2.85
28 29 0.679002 TCCACGTCGAGGGAGGTAAG 60.679 60.000 10.27 0.00 39.13 2.34
29 30 1.139095 CACGTCGAGGGAGGTAAGC 59.861 63.158 10.27 0.00 39.13 3.09
30 31 1.001145 ACGTCGAGGGAGGTAAGCT 60.001 57.895 10.27 0.00 39.36 3.74
31 32 1.031029 ACGTCGAGGGAGGTAAGCTC 61.031 60.000 10.27 0.00 39.36 4.09
32 33 1.726533 CGTCGAGGGAGGTAAGCTCC 61.727 65.000 0.00 0.00 40.15 4.70
33 34 0.396001 GTCGAGGGAGGTAAGCTCCT 60.396 60.000 0.00 2.03 40.67 3.69
34 35 0.335361 TCGAGGGAGGTAAGCTCCTT 59.665 55.000 0.00 0.00 40.67 3.36
35 36 0.747852 CGAGGGAGGTAAGCTCCTTC 59.252 60.000 0.00 0.00 41.81 3.46
36 37 0.747852 GAGGGAGGTAAGCTCCTTCG 59.252 60.000 0.00 0.00 37.35 3.79
37 38 0.335361 AGGGAGGTAAGCTCCTTCGA 59.665 55.000 0.00 0.00 40.67 3.71
38 39 0.460722 GGGAGGTAAGCTCCTTCGAC 59.539 60.000 0.00 0.00 40.67 4.20
39 40 0.460722 GGAGGTAAGCTCCTTCGACC 59.539 60.000 0.00 0.00 38.02 4.79
40 41 0.460722 GAGGTAAGCTCCTTCGACCC 59.539 60.000 0.00 0.00 38.02 4.46
41 42 0.041386 AGGTAAGCTCCTTCGACCCT 59.959 55.000 0.00 0.00 33.52 4.34
42 43 0.460722 GGTAAGCTCCTTCGACCCTC 59.539 60.000 0.00 0.00 0.00 4.30
43 44 0.460722 GTAAGCTCCTTCGACCCTCC 59.539 60.000 0.00 0.00 0.00 4.30
44 45 0.040646 TAAGCTCCTTCGACCCTCCA 59.959 55.000 0.00 0.00 0.00 3.86
45 46 0.836400 AAGCTCCTTCGACCCTCCAA 60.836 55.000 0.00 0.00 0.00 3.53
46 47 0.618968 AGCTCCTTCGACCCTCCAAT 60.619 55.000 0.00 0.00 0.00 3.16
47 48 0.179070 GCTCCTTCGACCCTCCAATC 60.179 60.000 0.00 0.00 0.00 2.67
48 49 0.466124 CTCCTTCGACCCTCCAATCC 59.534 60.000 0.00 0.00 0.00 3.01
49 50 0.981277 TCCTTCGACCCTCCAATCCC 60.981 60.000 0.00 0.00 0.00 3.85
50 51 1.527370 CTTCGACCCTCCAATCCCC 59.473 63.158 0.00 0.00 0.00 4.81
51 52 1.984288 CTTCGACCCTCCAATCCCCC 61.984 65.000 0.00 0.00 0.00 5.40
52 53 2.366972 CGACCCTCCAATCCCCCT 60.367 66.667 0.00 0.00 0.00 4.79
53 54 2.001269 CGACCCTCCAATCCCCCTT 61.001 63.158 0.00 0.00 0.00 3.95
54 55 1.615262 GACCCTCCAATCCCCCTTG 59.385 63.158 0.00 0.00 0.00 3.61
55 56 0.919289 GACCCTCCAATCCCCCTTGA 60.919 60.000 0.00 0.00 0.00 3.02
56 57 0.254299 ACCCTCCAATCCCCCTTGAT 60.254 55.000 0.00 0.00 0.00 2.57
57 58 0.480252 CCCTCCAATCCCCCTTGATC 59.520 60.000 0.00 0.00 0.00 2.92
58 59 1.527457 CCTCCAATCCCCCTTGATCT 58.473 55.000 0.00 0.00 0.00 2.75
59 60 1.423161 CCTCCAATCCCCCTTGATCTC 59.577 57.143 0.00 0.00 0.00 2.75
60 61 1.423161 CTCCAATCCCCCTTGATCTCC 59.577 57.143 0.00 0.00 0.00 3.71
61 62 1.011293 TCCAATCCCCCTTGATCTCCT 59.989 52.381 0.00 0.00 0.00 3.69
62 63 1.423161 CCAATCCCCCTTGATCTCCTC 59.577 57.143 0.00 0.00 0.00 3.71
63 64 1.423161 CAATCCCCCTTGATCTCCTCC 59.577 57.143 0.00 0.00 0.00 4.30
64 65 0.472734 ATCCCCCTTGATCTCCTCCG 60.473 60.000 0.00 0.00 0.00 4.63
65 66 1.383248 CCCCCTTGATCTCCTCCGT 60.383 63.158 0.00 0.00 0.00 4.69
66 67 0.983378 CCCCCTTGATCTCCTCCGTT 60.983 60.000 0.00 0.00 0.00 4.44
67 68 0.912486 CCCCTTGATCTCCTCCGTTT 59.088 55.000 0.00 0.00 0.00 3.60
68 69 1.134371 CCCCTTGATCTCCTCCGTTTC 60.134 57.143 0.00 0.00 0.00 2.78
69 70 1.834263 CCCTTGATCTCCTCCGTTTCT 59.166 52.381 0.00 0.00 0.00 2.52
70 71 2.237392 CCCTTGATCTCCTCCGTTTCTT 59.763 50.000 0.00 0.00 0.00 2.52
71 72 3.526534 CCTTGATCTCCTCCGTTTCTTC 58.473 50.000 0.00 0.00 0.00 2.87
72 73 3.055819 CCTTGATCTCCTCCGTTTCTTCA 60.056 47.826 0.00 0.00 0.00 3.02
73 74 4.383552 CCTTGATCTCCTCCGTTTCTTCAT 60.384 45.833 0.00 0.00 0.00 2.57
74 75 4.392921 TGATCTCCTCCGTTTCTTCATC 57.607 45.455 0.00 0.00 0.00 2.92
75 76 2.941453 TCTCCTCCGTTTCTTCATCG 57.059 50.000 0.00 0.00 0.00 3.84
76 77 2.168496 TCTCCTCCGTTTCTTCATCGT 58.832 47.619 0.00 0.00 0.00 3.73
77 78 2.561419 TCTCCTCCGTTTCTTCATCGTT 59.439 45.455 0.00 0.00 0.00 3.85
78 79 3.006537 TCTCCTCCGTTTCTTCATCGTTT 59.993 43.478 0.00 0.00 0.00 3.60
79 80 3.735591 TCCTCCGTTTCTTCATCGTTTT 58.264 40.909 0.00 0.00 0.00 2.43
80 81 3.496884 TCCTCCGTTTCTTCATCGTTTTG 59.503 43.478 0.00 0.00 0.00 2.44
81 82 3.364964 CCTCCGTTTCTTCATCGTTTTGG 60.365 47.826 0.00 0.00 0.00 3.28
82 83 2.031508 TCCGTTTCTTCATCGTTTTGGC 60.032 45.455 0.00 0.00 0.00 4.52
83 84 2.031157 CCGTTTCTTCATCGTTTTGGCT 60.031 45.455 0.00 0.00 0.00 4.75
84 85 2.973224 CGTTTCTTCATCGTTTTGGCTG 59.027 45.455 0.00 0.00 0.00 4.85
85 86 3.303725 CGTTTCTTCATCGTTTTGGCTGA 60.304 43.478 0.00 0.00 0.00 4.26
86 87 4.613622 CGTTTCTTCATCGTTTTGGCTGAT 60.614 41.667 0.00 0.00 0.00 2.90
87 88 4.685169 TTCTTCATCGTTTTGGCTGATC 57.315 40.909 0.00 0.00 0.00 2.92
88 89 2.672874 TCTTCATCGTTTTGGCTGATCG 59.327 45.455 0.00 0.00 0.00 3.69
89 90 2.378445 TCATCGTTTTGGCTGATCGA 57.622 45.000 0.00 0.00 35.14 3.59
90 91 2.270923 TCATCGTTTTGGCTGATCGAG 58.729 47.619 0.00 0.00 34.20 4.04
91 92 2.094234 TCATCGTTTTGGCTGATCGAGA 60.094 45.455 0.00 0.00 34.20 4.04
92 93 2.672961 TCGTTTTGGCTGATCGAGAT 57.327 45.000 0.00 0.00 0.00 2.75
93 94 2.270923 TCGTTTTGGCTGATCGAGATG 58.729 47.619 0.00 0.00 0.00 2.90
94 95 1.267732 CGTTTTGGCTGATCGAGATGC 60.268 52.381 0.00 0.00 0.00 3.91
95 96 1.064654 GTTTTGGCTGATCGAGATGCC 59.935 52.381 15.60 15.60 45.10 4.40
96 97 0.543277 TTTGGCTGATCGAGATGCCT 59.457 50.000 20.71 0.00 45.11 4.75
97 98 0.105593 TTGGCTGATCGAGATGCCTC 59.894 55.000 20.71 1.30 45.11 4.70
98 99 1.005156 GGCTGATCGAGATGCCTCC 60.005 63.158 15.30 0.00 41.92 4.30
99 100 1.744639 GCTGATCGAGATGCCTCCA 59.255 57.895 0.00 0.00 36.04 3.86
100 101 0.599728 GCTGATCGAGATGCCTCCAC 60.600 60.000 0.00 0.00 36.04 4.02
101 102 0.318529 CTGATCGAGATGCCTCCACG 60.319 60.000 0.00 0.00 36.04 4.94
102 103 1.037579 TGATCGAGATGCCTCCACGT 61.038 55.000 0.00 0.00 36.04 4.49
103 104 0.318275 GATCGAGATGCCTCCACGTC 60.318 60.000 0.00 0.00 36.04 4.34
104 105 2.064723 ATCGAGATGCCTCCACGTCG 62.065 60.000 0.00 0.00 36.04 5.12
105 106 2.105128 GAGATGCCTCCACGTCGG 59.895 66.667 0.00 0.00 33.30 4.79
106 107 3.432051 GAGATGCCTCCACGTCGGG 62.432 68.421 0.00 0.00 33.30 5.14
107 108 4.530857 GATGCCTCCACGTCGGGG 62.531 72.222 7.38 7.38 34.36 5.73
112 113 2.044650 CTCCACGTCGGGGAGGTA 60.045 66.667 32.26 3.89 46.65 3.08
113 114 1.679977 CTCCACGTCGGGGAGGTAA 60.680 63.158 32.26 3.48 46.65 2.85
114 115 1.664321 CTCCACGTCGGGGAGGTAAG 61.664 65.000 32.26 10.44 46.65 2.34
115 116 2.183555 CACGTCGGGGAGGTAAGC 59.816 66.667 0.00 0.00 0.00 3.09
116 117 2.036890 ACGTCGGGGAGGTAAGCT 59.963 61.111 0.00 0.00 0.00 3.74
117 118 2.050934 ACGTCGGGGAGGTAAGCTC 61.051 63.158 0.00 0.00 0.00 4.09
118 119 1.753463 CGTCGGGGAGGTAAGCTCT 60.753 63.158 0.00 0.00 0.00 4.09
119 120 1.321074 CGTCGGGGAGGTAAGCTCTT 61.321 60.000 0.00 0.00 0.00 2.85
120 121 0.903236 GTCGGGGAGGTAAGCTCTTT 59.097 55.000 0.00 0.00 0.00 2.52
121 122 1.134759 GTCGGGGAGGTAAGCTCTTTC 60.135 57.143 0.00 0.00 0.00 2.62
122 123 0.179108 CGGGGAGGTAAGCTCTTTCG 60.179 60.000 0.00 0.00 0.00 3.46
123 124 1.192428 GGGGAGGTAAGCTCTTTCGA 58.808 55.000 0.00 0.00 0.00 3.71
124 125 1.134759 GGGGAGGTAAGCTCTTTCGAC 60.135 57.143 0.00 0.00 0.00 4.20
125 126 1.134759 GGGAGGTAAGCTCTTTCGACC 60.135 57.143 0.00 0.00 0.00 4.79
126 127 1.134759 GGAGGTAAGCTCTTTCGACCC 60.135 57.143 0.00 0.00 0.00 4.46
127 128 0.903236 AGGTAAGCTCTTTCGACCCC 59.097 55.000 0.00 0.00 0.00 4.95
128 129 0.903236 GGTAAGCTCTTTCGACCCCT 59.097 55.000 0.00 0.00 0.00 4.79
129 130 1.134759 GGTAAGCTCTTTCGACCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
130 131 1.134759 GTAAGCTCTTTCGACCCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
131 132 0.836400 AAGCTCTTTCGACCCCTCCA 60.836 55.000 0.00 0.00 0.00 3.86
132 133 0.836400 AGCTCTTTCGACCCCTCCAA 60.836 55.000 0.00 0.00 0.00 3.53
133 134 0.253327 GCTCTTTCGACCCCTCCAAT 59.747 55.000 0.00 0.00 0.00 3.16
134 135 1.340114 GCTCTTTCGACCCCTCCAATT 60.340 52.381 0.00 0.00 0.00 2.32
135 136 2.093128 GCTCTTTCGACCCCTCCAATTA 60.093 50.000 0.00 0.00 0.00 1.40
136 137 3.532542 CTCTTTCGACCCCTCCAATTAC 58.467 50.000 0.00 0.00 0.00 1.89
137 138 3.178865 TCTTTCGACCCCTCCAATTACT 58.821 45.455 0.00 0.00 0.00 2.24
138 139 3.585732 TCTTTCGACCCCTCCAATTACTT 59.414 43.478 0.00 0.00 0.00 2.24
139 140 4.042435 TCTTTCGACCCCTCCAATTACTTT 59.958 41.667 0.00 0.00 0.00 2.66
140 141 4.376225 TTCGACCCCTCCAATTACTTTT 57.624 40.909 0.00 0.00 0.00 2.27
141 142 5.502089 TTCGACCCCTCCAATTACTTTTA 57.498 39.130 0.00 0.00 0.00 1.52
142 143 5.093849 TCGACCCCTCCAATTACTTTTAG 57.906 43.478 0.00 0.00 0.00 1.85
143 144 4.533311 TCGACCCCTCCAATTACTTTTAGT 59.467 41.667 0.00 0.00 0.00 2.24
144 145 4.874396 CGACCCCTCCAATTACTTTTAGTC 59.126 45.833 0.00 0.00 0.00 2.59
145 146 5.570034 CGACCCCTCCAATTACTTTTAGTCA 60.570 44.000 0.00 0.00 0.00 3.41
146 147 6.208840 ACCCCTCCAATTACTTTTAGTCAA 57.791 37.500 0.00 0.00 0.00 3.18
147 148 6.616577 ACCCCTCCAATTACTTTTAGTCAAA 58.383 36.000 0.00 0.00 0.00 2.69
148 149 6.492429 ACCCCTCCAATTACTTTTAGTCAAAC 59.508 38.462 0.00 0.00 0.00 2.93
149 150 6.492087 CCCCTCCAATTACTTTTAGTCAAACA 59.508 38.462 0.00 0.00 0.00 2.83
150 151 7.014808 CCCCTCCAATTACTTTTAGTCAAACAA 59.985 37.037 0.00 0.00 0.00 2.83
151 152 7.865889 CCCTCCAATTACTTTTAGTCAAACAAC 59.134 37.037 0.00 0.00 0.00 3.32
152 153 8.630037 CCTCCAATTACTTTTAGTCAAACAACT 58.370 33.333 0.00 0.00 0.00 3.16
170 171 6.799926 ACAACTTTTGTTTTGATGCAGTTT 57.200 29.167 0.00 0.00 42.22 2.66
171 172 7.200778 ACAACTTTTGTTTTGATGCAGTTTT 57.799 28.000 0.00 0.00 42.22 2.43
172 173 7.647228 ACAACTTTTGTTTTGATGCAGTTTTT 58.353 26.923 0.00 0.00 42.22 1.94
173 174 7.590689 ACAACTTTTGTTTTGATGCAGTTTTTG 59.409 29.630 0.00 0.00 42.22 2.44
174 175 6.610456 ACTTTTGTTTTGATGCAGTTTTTGG 58.390 32.000 0.00 0.00 0.00 3.28
175 176 4.612932 TTGTTTTGATGCAGTTTTTGGC 57.387 36.364 0.00 0.00 0.00 4.52
176 177 3.603532 TGTTTTGATGCAGTTTTTGGCA 58.396 36.364 0.00 0.00 45.23 4.92
177 178 3.373439 TGTTTTGATGCAGTTTTTGGCAC 59.627 39.130 0.00 0.00 43.75 5.01
178 179 3.540314 TTTGATGCAGTTTTTGGCACT 57.460 38.095 0.00 0.00 43.75 4.40
179 180 2.512485 TGATGCAGTTTTTGGCACTG 57.488 45.000 0.00 0.00 43.75 3.66
180 181 1.068895 TGATGCAGTTTTTGGCACTGG 59.931 47.619 5.17 0.00 43.75 4.00
181 182 0.393820 ATGCAGTTTTTGGCACTGGG 59.606 50.000 5.17 0.00 43.75 4.45
182 183 0.975040 TGCAGTTTTTGGCACTGGGT 60.975 50.000 5.17 0.00 41.81 4.51
183 184 0.530431 GCAGTTTTTGGCACTGGGTG 60.530 55.000 5.17 0.00 41.81 4.61
184 185 1.110442 CAGTTTTTGGCACTGGGTGA 58.890 50.000 1.57 0.00 38.43 4.02
185 186 1.480137 CAGTTTTTGGCACTGGGTGAA 59.520 47.619 1.57 0.00 38.43 3.18
186 187 1.480545 AGTTTTTGGCACTGGGTGAAC 59.519 47.619 1.57 0.00 35.23 3.18
187 188 0.827368 TTTTTGGCACTGGGTGAACC 59.173 50.000 1.57 0.00 35.23 3.62
362 363 9.891828 TTGACAAACACATGAACATTCTATAAC 57.108 29.630 0.00 0.00 0.00 1.89
364 365 7.526608 ACAAACACATGAACATTCTATAACGG 58.473 34.615 0.00 0.00 0.00 4.44
365 366 5.734855 ACACATGAACATTCTATAACGGC 57.265 39.130 0.00 0.00 0.00 5.68
375 377 5.648092 ACATTCTATAACGGCAGAAGCTTTT 59.352 36.000 0.00 0.00 41.70 2.27
387 389 6.093404 GGCAGAAGCTTTTCTAAAACCATAC 58.907 40.000 0.00 0.00 41.70 2.39
477 480 9.188588 GCATGGATATGTTTTGAAATACATGAG 57.811 33.333 9.92 0.00 36.46 2.90
498 501 9.382244 CATGAGAACTTTTTAAAACTACGGAAG 57.618 33.333 0.00 0.00 0.00 3.46
499 502 7.412063 TGAGAACTTTTTAAAACTACGGAAGC 58.588 34.615 0.00 0.00 0.00 3.86
579 796 7.440856 GGAAAATTATGTTTGTGTTGTGTGGAT 59.559 33.333 0.00 0.00 0.00 3.41
595 812 9.921637 GTTGTGTGGATTTTCTTATTTGGATAA 57.078 29.630 0.00 0.00 0.00 1.75
626 843 3.270027 TGTTCCTGTTTCTGTGTGAGTG 58.730 45.455 0.00 0.00 0.00 3.51
643 860 0.609662 GTGGCCCCTTTCTACGTACA 59.390 55.000 0.00 0.00 0.00 2.90
658 875 8.922058 TTCTACGTACATGAGTTTCCTATTTC 57.078 34.615 0.00 0.00 0.00 2.17
675 893 6.044682 CCTATTTCCGTGTTAGGTTACGAAT 58.955 40.000 0.00 0.00 42.54 3.34
677 895 4.517952 TTCCGTGTTAGGTTACGAATCA 57.482 40.909 0.00 0.00 42.54 2.57
682 900 5.863397 CCGTGTTAGGTTACGAATCAGTTTA 59.137 40.000 0.00 0.00 42.54 2.01
698 916 5.806818 TCAGTTTATTATGGAAACCGTGGA 58.193 37.500 0.00 0.00 37.48 4.02
706 958 2.667470 TGGAAACCGTGGATTTGGAAA 58.333 42.857 0.00 0.00 0.00 3.13
729 981 0.317479 GGCCGATACGCCTTCTATGT 59.683 55.000 0.00 0.00 46.10 2.29
730 982 1.270147 GGCCGATACGCCTTCTATGTT 60.270 52.381 0.00 0.00 46.10 2.71
731 983 2.059541 GCCGATACGCCTTCTATGTTC 58.940 52.381 0.00 0.00 0.00 3.18
742 994 7.159372 ACGCCTTCTATGTTCTTCTTCTAAAA 58.841 34.615 0.00 0.00 0.00 1.52
791 1043 7.554835 AGAGTTTGTATATGCGGGATTTGTTTA 59.445 33.333 0.00 0.00 0.00 2.01
810 1062 6.502652 TGTTTATGGAATTATGCCACGAATG 58.497 36.000 0.00 0.00 38.44 2.67
811 1063 3.648339 ATGGAATTATGCCACGAATGC 57.352 42.857 0.00 0.00 38.44 3.56
820 1072 4.169696 CACGAATGCCGGGCCCTA 62.170 66.667 22.43 6.45 43.93 3.53
821 1073 4.171103 ACGAATGCCGGGCCCTAC 62.171 66.667 22.43 12.49 43.93 3.18
823 1075 3.804329 GAATGCCGGGCCCTACCA 61.804 66.667 22.43 14.29 42.05 3.25
829 1081 1.677633 CCGGGCCCTACCAAACTTG 60.678 63.158 22.43 0.00 42.05 3.16
843 1095 2.723124 AACTTGCTTGGCCGTAAATG 57.277 45.000 0.00 0.00 0.00 2.32
904 1156 2.856091 AGCGATTTCGAACGTTTGAG 57.144 45.000 17.41 8.05 43.02 3.02
918 1170 3.058914 ACGTTTGAGCTTTTGAATCTCGG 60.059 43.478 0.00 0.00 0.00 4.63
919 1171 3.058914 CGTTTGAGCTTTTGAATCTCGGT 60.059 43.478 0.00 0.00 0.00 4.69
920 1172 4.467735 GTTTGAGCTTTTGAATCTCGGTC 58.532 43.478 0.00 0.00 0.00 4.79
921 1173 2.337583 TGAGCTTTTGAATCTCGGTCG 58.662 47.619 0.00 0.00 0.00 4.79
934 1186 2.036733 TCTCGGTCGCCCAATTTATAGG 59.963 50.000 0.00 0.00 0.00 2.57
935 1187 0.872388 CGGTCGCCCAATTTATAGGC 59.128 55.000 0.00 0.00 43.53 3.93
936 1188 1.244816 GGTCGCCCAATTTATAGGCC 58.755 55.000 0.00 0.00 44.13 5.19
937 1189 0.872388 GTCGCCCAATTTATAGGCCG 59.128 55.000 0.00 0.00 44.13 6.13
978 1234 1.399727 CCCGTTCATTCTGTTGCGTTC 60.400 52.381 0.00 0.00 0.00 3.95
979 1235 1.580439 CGTTCATTCTGTTGCGTTCG 58.420 50.000 0.00 0.00 0.00 3.95
980 1236 1.070843 CGTTCATTCTGTTGCGTTCGT 60.071 47.619 0.00 0.00 0.00 3.85
981 1237 2.560896 GTTCATTCTGTTGCGTTCGTC 58.439 47.619 0.00 0.00 0.00 4.20
1065 1343 2.497675 AGAGGAGAACAATCGCAAGCTA 59.502 45.455 0.00 0.00 37.18 3.32
1225 1606 1.380302 CCCAAGCAGCCCAAGTACT 59.620 57.895 0.00 0.00 0.00 2.73
1247 1628 4.486090 CGAGGTACGTACGCGATC 57.514 61.111 25.77 16.89 42.00 3.69
1250 1631 1.267732 CGAGGTACGTACGCGATCTTT 60.268 52.381 25.77 0.00 42.00 2.52
1254 1635 5.612492 CGAGGTACGTACGCGATCTTTAATA 60.612 44.000 25.77 0.00 42.00 0.98
1255 1636 5.444122 AGGTACGTACGCGATCTTTAATAC 58.556 41.667 15.93 6.02 42.00 1.89
1259 1646 4.043750 CGTACGCGATCTTTAATACCCAA 58.956 43.478 15.93 0.00 41.33 4.12
1265 1652 6.127842 ACGCGATCTTTAATACCCAAAAATGT 60.128 34.615 15.93 0.00 0.00 2.71
1266 1653 7.066043 ACGCGATCTTTAATACCCAAAAATGTA 59.934 33.333 15.93 0.00 0.00 2.29
1297 1946 9.263446 TCTAGGATTAACTTGGTGTAATGTACT 57.737 33.333 0.00 0.00 0.00 2.73
1300 1949 9.832445 AGGATTAACTTGGTGTAATGTACTATG 57.168 33.333 0.00 0.00 0.00 2.23
1301 1950 9.609346 GGATTAACTTGGTGTAATGTACTATGT 57.391 33.333 0.00 0.00 0.00 2.29
1350 1999 7.064229 GGTAGAGAAGAAGAAGATTAGGAGGA 58.936 42.308 0.00 0.00 0.00 3.71
1352 2001 6.136155 AGAGAAGAAGAAGATTAGGAGGAGG 58.864 44.000 0.00 0.00 0.00 4.30
1353 2002 6.068498 AGAGAAGAAGAAGATTAGGAGGAGGA 60.068 42.308 0.00 0.00 0.00 3.71
1354 2003 6.507568 AGAAGAAGAAGATTAGGAGGAGGAA 58.492 40.000 0.00 0.00 0.00 3.36
1355 2004 6.382859 AGAAGAAGAAGATTAGGAGGAGGAAC 59.617 42.308 0.00 0.00 0.00 3.62
1356 2005 4.647399 AGAAGAAGATTAGGAGGAGGAACG 59.353 45.833 0.00 0.00 0.00 3.95
1358 2007 5.126699 AGAAGATTAGGAGGAGGAACGTA 57.873 43.478 0.00 0.00 0.00 3.57
1359 2008 4.888823 AGAAGATTAGGAGGAGGAACGTAC 59.111 45.833 0.00 0.00 0.00 3.67
1385 2034 1.153086 ATTCCTCTCCATGCACCGC 60.153 57.895 0.00 0.00 0.00 5.68
1387 2036 2.513204 CCTCTCCATGCACCGCAG 60.513 66.667 0.00 0.00 43.65 5.18
1402 2051 3.061563 CACCGCAGCATTTGATTTGATTG 59.938 43.478 0.00 0.00 0.00 2.67
1403 2052 3.056678 ACCGCAGCATTTGATTTGATTGA 60.057 39.130 0.00 0.00 0.00 2.57
1418 2117 9.210329 TGATTTGATTGATGATTGTTTTCAAGG 57.790 29.630 0.00 0.00 43.41 3.61
1419 2118 9.426837 GATTTGATTGATGATTGTTTTCAAGGA 57.573 29.630 0.00 0.00 43.41 3.36
1550 2261 2.736531 GGCAACCCCAGCTTTGTG 59.263 61.111 0.00 0.00 0.00 3.33
1577 2288 4.321718 CCATGAAACAGTCTCATGTCACT 58.678 43.478 14.58 0.00 45.81 3.41
1623 2338 2.359900 CCCCACTCACTCTTGCATTAC 58.640 52.381 0.00 0.00 0.00 1.89
1635 2350 4.569943 TCTTGCATTACTCACTTCACTCC 58.430 43.478 0.00 0.00 0.00 3.85
1645 2360 3.777522 CTCACTTCACTCCCTTCCCTTAT 59.222 47.826 0.00 0.00 0.00 1.73
1651 2375 5.179452 TCACTCCCTTCCCTTATTGAAAG 57.821 43.478 0.00 0.00 0.00 2.62
1654 2378 5.183904 CACTCCCTTCCCTTATTGAAAGTTG 59.816 44.000 0.00 0.00 0.00 3.16
1655 2379 5.074515 ACTCCCTTCCCTTATTGAAAGTTGA 59.925 40.000 0.00 0.00 0.00 3.18
1656 2380 5.959512 TCCCTTCCCTTATTGAAAGTTGAA 58.040 37.500 0.00 0.00 0.00 2.69
1657 2381 6.377912 TCCCTTCCCTTATTGAAAGTTGAAA 58.622 36.000 0.00 0.00 0.00 2.69
1658 2382 6.266786 TCCCTTCCCTTATTGAAAGTTGAAAC 59.733 38.462 0.00 0.00 0.00 2.78
1659 2383 6.455647 CCTTCCCTTATTGAAAGTTGAAACC 58.544 40.000 0.00 0.00 0.00 3.27
1660 2384 5.699097 TCCCTTATTGAAAGTTGAAACCG 57.301 39.130 0.00 0.00 0.00 4.44
1661 2385 5.134661 TCCCTTATTGAAAGTTGAAACCGT 58.865 37.500 0.00 0.00 0.00 4.83
1662 2386 5.239963 TCCCTTATTGAAAGTTGAAACCGTC 59.760 40.000 0.00 0.00 0.00 4.79
1663 2387 5.240844 CCCTTATTGAAAGTTGAAACCGTCT 59.759 40.000 0.00 0.00 0.00 4.18
1664 2388 6.238925 CCCTTATTGAAAGTTGAAACCGTCTT 60.239 38.462 0.00 0.00 0.00 3.01
1665 2389 6.856426 CCTTATTGAAAGTTGAAACCGTCTTC 59.144 38.462 0.00 0.00 0.00 2.87
1666 2390 3.936902 TGAAAGTTGAAACCGTCTTCG 57.063 42.857 0.00 0.00 0.00 3.79
1670 2394 1.066002 AGTTGAAACCGTCTTCGTCGA 59.934 47.619 0.00 0.00 35.01 4.20
1678 2429 1.530031 CCGTCTTCGTCGATCTGTCTG 60.530 57.143 0.00 0.00 35.01 3.51
1690 2441 3.474600 GATCTGTCTGATGATTGTGGGG 58.525 50.000 0.00 0.00 35.14 4.96
1696 2459 0.964860 TGATGATTGTGGGGCGTTGG 60.965 55.000 0.00 0.00 0.00 3.77
1747 2510 0.687757 TTCTGCCGGCTGTATCTCCT 60.688 55.000 29.70 0.00 0.00 3.69
1748 2511 0.185175 TCTGCCGGCTGTATCTCCTA 59.815 55.000 29.70 5.42 0.00 2.94
1758 2521 4.700213 GGCTGTATCTCCTAGAGAGTGATC 59.300 50.000 0.32 0.00 42.26 2.92
1763 2526 8.442660 TGTATCTCCTAGAGAGTGATCATAGA 57.557 38.462 0.00 0.00 42.26 1.98
1778 2541 6.586344 TGATCATAGAATCACTTTGGAGGAC 58.414 40.000 0.00 0.00 30.76 3.85
1789 2552 2.089116 TTGGAGGACGAGGAGGGTGA 62.089 60.000 0.00 0.00 0.00 4.02
1796 2559 0.255318 ACGAGGAGGGTGACGAGTAT 59.745 55.000 0.00 0.00 0.00 2.12
1846 2609 2.125147 CAGCGCCGGATGGAGAAA 60.125 61.111 5.05 0.00 37.19 2.52
1910 2673 1.663702 CGAGTGGGTCGTGTGGAAC 60.664 63.158 0.00 0.00 44.20 3.62
1991 2786 9.693739 CTATATATGTCCTCTAGTGAGAATGGT 57.306 37.037 0.00 0.00 42.73 3.55
2017 2812 6.952743 GTGCACTTCACAGAATTAGGATATG 58.047 40.000 10.32 0.00 44.98 1.78
2019 2814 5.333645 GCACTTCACAGAATTAGGATATGCG 60.334 44.000 0.00 0.00 0.00 4.73
2020 2815 4.752101 ACTTCACAGAATTAGGATATGCGC 59.248 41.667 0.00 0.00 0.00 6.09
2021 2816 3.664107 TCACAGAATTAGGATATGCGCC 58.336 45.455 4.18 0.00 0.00 6.53
2434 3582 2.632987 ACACCGGCCCTTTGATATAC 57.367 50.000 0.00 0.00 0.00 1.47
2499 3647 5.815581 AGTTCCTACTACAAATGAATGCCA 58.184 37.500 0.00 0.00 31.21 4.92
2538 3686 9.340695 GTGATATACTGAGATTCGAAGATTCAG 57.659 37.037 23.69 23.69 41.98 3.02
2663 3813 2.093306 TGGCTGGTACAATCGTGAAG 57.907 50.000 0.00 0.00 38.70 3.02
2683 3833 6.738649 GTGAAGCTTCTGTTTTCGTATGATTC 59.261 38.462 26.09 0.00 0.00 2.52
2692 3842 1.227527 CGTATGATTCTGCCCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
2696 3846 2.592102 ATGATTCTGCCCGCCATAAT 57.408 45.000 0.00 0.00 0.00 1.28
2848 3998 8.989980 GCTTTTGGGTATGTATAGTATGTCTTC 58.010 37.037 0.00 0.00 0.00 2.87
2853 4003 7.122204 TGGGTATGTATAGTATGTCTTCGATGG 59.878 40.741 0.00 0.00 0.00 3.51
2930 4080 5.587043 TGTGTACTCCACTTTTACAAGTTGG 59.413 40.000 7.96 0.00 40.66 3.77
2955 4105 8.673711 GGTCTGTAGTTTTGTGCATCAATATTA 58.326 33.333 0.00 0.00 35.84 0.98
2967 4117 8.849168 TGTGCATCAATATTAGTTTTCATAGGG 58.151 33.333 0.00 0.00 0.00 3.53
2993 4143 6.064060 AGTTCTTGGATGATCACAGAAACAA 58.936 36.000 0.00 0.00 0.00 2.83
3055 4205 7.751732 TCAAAGAATGATAAGACCACATTTCG 58.248 34.615 0.00 0.00 34.94 3.46
3067 4217 3.066203 ACCACATTTCGTCAACCAAGTTC 59.934 43.478 0.00 0.00 0.00 3.01
3087 4237 9.443283 CAAGTTCTTTCTACATTTTGAGTCTTG 57.557 33.333 0.00 0.00 0.00 3.02
3114 4265 7.846101 ATCTGACCATGAACTGTCATATCTA 57.154 36.000 0.00 0.00 42.88 1.98
3188 4339 3.023946 TGGTTTGCGATTTGTTGATGG 57.976 42.857 0.00 0.00 0.00 3.51
3202 4353 0.322456 TGATGGCCACCAGCACTTAC 60.322 55.000 8.16 0.00 45.45 2.34
3205 4356 0.988063 TGGCCACCAGCACTTACATA 59.012 50.000 0.00 0.00 46.50 2.29
3206 4357 1.065491 TGGCCACCAGCACTTACATAG 60.065 52.381 0.00 0.00 46.50 2.23
3226 4377 2.169352 AGCATCTACTTCCGCACTTCAT 59.831 45.455 0.00 0.00 0.00 2.57
3227 4378 2.541762 GCATCTACTTCCGCACTTCATC 59.458 50.000 0.00 0.00 0.00 2.92
3228 4379 2.961526 TCTACTTCCGCACTTCATCC 57.038 50.000 0.00 0.00 0.00 3.51
3229 4380 1.480954 TCTACTTCCGCACTTCATCCC 59.519 52.381 0.00 0.00 0.00 3.85
3230 4381 0.539986 TACTTCCGCACTTCATCCCC 59.460 55.000 0.00 0.00 0.00 4.81
3283 4438 7.504911 GTCTAACCTTAACCTTCTTCCCTTTTT 59.495 37.037 0.00 0.00 0.00 1.94
3284 4439 8.726202 TCTAACCTTAACCTTCTTCCCTTTTTA 58.274 33.333 0.00 0.00 0.00 1.52
3286 4441 6.919158 ACCTTAACCTTCTTCCCTTTTTACT 58.081 36.000 0.00 0.00 0.00 2.24
3288 4443 8.505246 ACCTTAACCTTCTTCCCTTTTTACTAA 58.495 33.333 0.00 0.00 0.00 2.24
3289 4444 8.790718 CCTTAACCTTCTTCCCTTTTTACTAAC 58.209 37.037 0.00 0.00 0.00 2.34
3293 4448 8.834004 ACCTTCTTCCCTTTTTACTAACTTTT 57.166 30.769 0.00 0.00 0.00 2.27
3294 4449 8.910944 ACCTTCTTCCCTTTTTACTAACTTTTC 58.089 33.333 0.00 0.00 0.00 2.29
3295 4450 8.909923 CCTTCTTCCCTTTTTACTAACTTTTCA 58.090 33.333 0.00 0.00 0.00 2.69
3296 4451 9.952188 CTTCTTCCCTTTTTACTAACTTTTCAG 57.048 33.333 0.00 0.00 0.00 3.02
3378 4533 8.986991 AGAAGTTCATGGATTCTCATAGTAGTT 58.013 33.333 5.50 0.00 0.00 2.24
3460 4615 5.223449 TCCTTGTTTCTATCCGACTTTGT 57.777 39.130 0.00 0.00 0.00 2.83
3470 4625 3.201353 TCCGACTTTGTGTGATTTCCA 57.799 42.857 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.278206 CGACGTGGAGGCATCTCG 60.278 66.667 12.83 12.83 40.85 4.04
1 2 1.064946 CTCGACGTGGAGGCATCTC 59.935 63.158 18.85 0.00 39.25 2.75
2 3 2.418910 CCTCGACGTGGAGGCATCT 61.419 63.158 30.19 0.00 46.53 2.90
3 4 2.105128 CCTCGACGTGGAGGCATC 59.895 66.667 30.19 0.00 46.53 3.91
8 9 0.679002 TTACCTCCCTCGACGTGGAG 60.679 60.000 19.57 19.57 46.39 3.86
9 10 0.679002 CTTACCTCCCTCGACGTGGA 60.679 60.000 17.27 12.28 0.00 4.02
10 11 1.807886 CTTACCTCCCTCGACGTGG 59.192 63.158 9.00 9.00 0.00 4.94
11 12 1.139095 GCTTACCTCCCTCGACGTG 59.861 63.158 0.00 0.00 0.00 4.49
12 13 1.001145 AGCTTACCTCCCTCGACGT 60.001 57.895 0.00 0.00 0.00 4.34
13 14 1.728672 GAGCTTACCTCCCTCGACG 59.271 63.158 0.00 0.00 34.35 5.12
21 22 0.460722 GGGTCGAAGGAGCTTACCTC 59.539 60.000 0.00 0.00 39.62 3.85
22 23 0.041386 AGGGTCGAAGGAGCTTACCT 59.959 55.000 0.00 0.00 42.69 3.08
23 24 0.460722 GAGGGTCGAAGGAGCTTACC 59.539 60.000 0.00 0.00 40.51 2.85
24 25 0.460722 GGAGGGTCGAAGGAGCTTAC 59.539 60.000 0.00 0.00 40.51 2.34
25 26 0.040646 TGGAGGGTCGAAGGAGCTTA 59.959 55.000 0.00 0.00 40.51 3.09
26 27 0.836400 TTGGAGGGTCGAAGGAGCTT 60.836 55.000 0.00 0.00 40.51 3.74
27 28 0.618968 ATTGGAGGGTCGAAGGAGCT 60.619 55.000 0.00 0.00 40.51 4.09
28 29 0.179070 GATTGGAGGGTCGAAGGAGC 60.179 60.000 0.00 0.00 39.95 4.70
29 30 0.466124 GGATTGGAGGGTCGAAGGAG 59.534 60.000 0.00 0.00 0.00 3.69
30 31 0.981277 GGGATTGGAGGGTCGAAGGA 60.981 60.000 0.00 0.00 0.00 3.36
31 32 1.527370 GGGATTGGAGGGTCGAAGG 59.473 63.158 0.00 0.00 0.00 3.46
32 33 1.527370 GGGGATTGGAGGGTCGAAG 59.473 63.158 0.00 0.00 0.00 3.79
33 34 1.999002 GGGGGATTGGAGGGTCGAA 60.999 63.158 0.00 0.00 0.00 3.71
34 35 2.366435 GGGGGATTGGAGGGTCGA 60.366 66.667 0.00 0.00 0.00 4.20
35 36 2.001269 AAGGGGGATTGGAGGGTCG 61.001 63.158 0.00 0.00 0.00 4.79
36 37 0.919289 TCAAGGGGGATTGGAGGGTC 60.919 60.000 0.00 0.00 0.00 4.46
37 38 0.254299 ATCAAGGGGGATTGGAGGGT 60.254 55.000 0.00 0.00 0.00 4.34
38 39 0.480252 GATCAAGGGGGATTGGAGGG 59.520 60.000 0.00 0.00 0.00 4.30
39 40 1.423161 GAGATCAAGGGGGATTGGAGG 59.577 57.143 0.00 0.00 0.00 4.30
40 41 1.423161 GGAGATCAAGGGGGATTGGAG 59.577 57.143 0.00 0.00 0.00 3.86
41 42 1.011293 AGGAGATCAAGGGGGATTGGA 59.989 52.381 0.00 0.00 0.00 3.53
42 43 1.423161 GAGGAGATCAAGGGGGATTGG 59.577 57.143 0.00 0.00 0.00 3.16
43 44 1.423161 GGAGGAGATCAAGGGGGATTG 59.577 57.143 0.00 0.00 0.00 2.67
44 45 1.826447 GGAGGAGATCAAGGGGGATT 58.174 55.000 0.00 0.00 0.00 3.01
45 46 0.472734 CGGAGGAGATCAAGGGGGAT 60.473 60.000 0.00 0.00 0.00 3.85
46 47 1.075226 CGGAGGAGATCAAGGGGGA 60.075 63.158 0.00 0.00 0.00 4.81
47 48 0.983378 AACGGAGGAGATCAAGGGGG 60.983 60.000 0.00 0.00 0.00 5.40
48 49 0.912486 AAACGGAGGAGATCAAGGGG 59.088 55.000 0.00 0.00 0.00 4.79
49 50 1.834263 AGAAACGGAGGAGATCAAGGG 59.166 52.381 0.00 0.00 0.00 3.95
50 51 3.055819 TGAAGAAACGGAGGAGATCAAGG 60.056 47.826 0.00 0.00 0.00 3.61
51 52 4.193826 TGAAGAAACGGAGGAGATCAAG 57.806 45.455 0.00 0.00 0.00 3.02
52 53 4.678044 CGATGAAGAAACGGAGGAGATCAA 60.678 45.833 0.00 0.00 0.00 2.57
53 54 3.181486 CGATGAAGAAACGGAGGAGATCA 60.181 47.826 0.00 0.00 0.00 2.92
54 55 3.181485 ACGATGAAGAAACGGAGGAGATC 60.181 47.826 0.00 0.00 0.00 2.75
55 56 2.761208 ACGATGAAGAAACGGAGGAGAT 59.239 45.455 0.00 0.00 0.00 2.75
56 57 2.168496 ACGATGAAGAAACGGAGGAGA 58.832 47.619 0.00 0.00 0.00 3.71
57 58 2.656560 ACGATGAAGAAACGGAGGAG 57.343 50.000 0.00 0.00 0.00 3.69
58 59 3.396260 AAACGATGAAGAAACGGAGGA 57.604 42.857 0.00 0.00 0.00 3.71
59 60 3.364964 CCAAAACGATGAAGAAACGGAGG 60.365 47.826 0.00 0.00 0.00 4.30
60 61 3.810373 CCAAAACGATGAAGAAACGGAG 58.190 45.455 0.00 0.00 0.00 4.63
61 62 2.031508 GCCAAAACGATGAAGAAACGGA 60.032 45.455 0.00 0.00 0.00 4.69
62 63 2.031157 AGCCAAAACGATGAAGAAACGG 60.031 45.455 0.00 0.00 0.00 4.44
63 64 2.973224 CAGCCAAAACGATGAAGAAACG 59.027 45.455 0.00 0.00 0.00 3.60
64 65 4.223320 TCAGCCAAAACGATGAAGAAAC 57.777 40.909 0.00 0.00 0.00 2.78
65 66 4.378356 CGATCAGCCAAAACGATGAAGAAA 60.378 41.667 0.00 0.00 0.00 2.52
66 67 3.125146 CGATCAGCCAAAACGATGAAGAA 59.875 43.478 0.00 0.00 0.00 2.52
67 68 2.672874 CGATCAGCCAAAACGATGAAGA 59.327 45.455 0.00 0.00 0.00 2.87
68 69 2.672874 TCGATCAGCCAAAACGATGAAG 59.327 45.455 0.00 0.00 0.00 3.02
69 70 2.672874 CTCGATCAGCCAAAACGATGAA 59.327 45.455 0.00 0.00 32.81 2.57
70 71 2.094234 TCTCGATCAGCCAAAACGATGA 60.094 45.455 0.00 0.00 32.81 2.92
71 72 2.270923 TCTCGATCAGCCAAAACGATG 58.729 47.619 0.00 0.00 32.81 3.84
72 73 2.672961 TCTCGATCAGCCAAAACGAT 57.327 45.000 0.00 0.00 32.81 3.73
73 74 2.270923 CATCTCGATCAGCCAAAACGA 58.729 47.619 0.00 0.00 0.00 3.85
74 75 1.267732 GCATCTCGATCAGCCAAAACG 60.268 52.381 0.00 0.00 0.00 3.60
75 76 1.064654 GGCATCTCGATCAGCCAAAAC 59.935 52.381 14.91 0.00 46.26 2.43
76 77 1.382522 GGCATCTCGATCAGCCAAAA 58.617 50.000 14.91 0.00 46.26 2.44
77 78 3.085208 GGCATCTCGATCAGCCAAA 57.915 52.632 14.91 0.00 46.26 3.28
78 79 4.863707 GGCATCTCGATCAGCCAA 57.136 55.556 14.91 0.00 46.26 4.52
81 82 0.599728 GTGGAGGCATCTCGATCAGC 60.600 60.000 0.00 0.00 40.85 4.26
82 83 0.318529 CGTGGAGGCATCTCGATCAG 60.319 60.000 9.90 0.00 40.85 2.90
83 84 1.037579 ACGTGGAGGCATCTCGATCA 61.038 55.000 18.89 0.00 40.85 2.92
84 85 0.318275 GACGTGGAGGCATCTCGATC 60.318 60.000 18.89 11.04 40.85 3.69
85 86 1.736586 GACGTGGAGGCATCTCGAT 59.263 57.895 18.89 7.17 40.85 3.59
86 87 2.761195 CGACGTGGAGGCATCTCGA 61.761 63.158 18.89 0.00 40.85 4.04
87 88 2.278206 CGACGTGGAGGCATCTCG 60.278 66.667 12.83 12.83 40.85 4.04
88 89 2.105128 CCGACGTGGAGGCATCTC 59.895 66.667 0.00 0.00 42.00 2.75
89 90 3.461773 CCCGACGTGGAGGCATCT 61.462 66.667 0.00 0.00 42.00 2.90
90 91 4.530857 CCCCGACGTGGAGGCATC 62.531 72.222 0.00 0.00 42.00 3.91
96 97 1.679977 CTTACCTCCCCGACGTGGA 60.680 63.158 0.00 0.00 42.00 4.02
97 98 2.890371 CTTACCTCCCCGACGTGG 59.110 66.667 0.00 0.00 37.55 4.94
98 99 2.183555 GCTTACCTCCCCGACGTG 59.816 66.667 0.00 0.00 0.00 4.49
99 100 2.036890 AGCTTACCTCCCCGACGT 59.963 61.111 0.00 0.00 0.00 4.34
100 101 1.321074 AAGAGCTTACCTCCCCGACG 61.321 60.000 0.00 0.00 41.74 5.12
101 102 0.903236 AAAGAGCTTACCTCCCCGAC 59.097 55.000 0.00 0.00 41.74 4.79
102 103 1.192428 GAAAGAGCTTACCTCCCCGA 58.808 55.000 0.00 0.00 41.74 5.14
103 104 0.179108 CGAAAGAGCTTACCTCCCCG 60.179 60.000 0.00 0.00 41.74 5.73
104 105 1.134759 GTCGAAAGAGCTTACCTCCCC 60.135 57.143 0.00 0.00 43.49 4.81
105 106 2.296831 GTCGAAAGAGCTTACCTCCC 57.703 55.000 0.00 0.00 43.49 4.30
115 116 2.789409 AATTGGAGGGGTCGAAAGAG 57.211 50.000 0.00 0.00 43.49 2.85
116 117 3.178865 AGTAATTGGAGGGGTCGAAAGA 58.821 45.455 0.00 0.00 38.16 2.52
117 118 3.629142 AGTAATTGGAGGGGTCGAAAG 57.371 47.619 0.00 0.00 0.00 2.62
118 119 4.376225 AAAGTAATTGGAGGGGTCGAAA 57.624 40.909 0.00 0.00 0.00 3.46
119 120 4.376225 AAAAGTAATTGGAGGGGTCGAA 57.624 40.909 0.00 0.00 0.00 3.71
120 121 4.533311 ACTAAAAGTAATTGGAGGGGTCGA 59.467 41.667 0.00 0.00 0.00 4.20
121 122 4.840271 ACTAAAAGTAATTGGAGGGGTCG 58.160 43.478 0.00 0.00 0.00 4.79
122 123 5.812286 TGACTAAAAGTAATTGGAGGGGTC 58.188 41.667 0.00 0.00 0.00 4.46
123 124 5.853572 TGACTAAAAGTAATTGGAGGGGT 57.146 39.130 0.00 0.00 0.00 4.95
124 125 6.492087 TGTTTGACTAAAAGTAATTGGAGGGG 59.508 38.462 0.00 0.00 0.00 4.79
125 126 7.519032 TGTTTGACTAAAAGTAATTGGAGGG 57.481 36.000 0.00 0.00 0.00 4.30
126 127 8.630037 AGTTGTTTGACTAAAAGTAATTGGAGG 58.370 33.333 0.00 0.00 0.00 4.30
148 149 7.060864 CCAAAAACTGCATCAAAACAAAAGTTG 59.939 33.333 0.00 0.00 0.00 3.16
149 150 7.083230 CCAAAAACTGCATCAAAACAAAAGTT 58.917 30.769 0.00 0.00 0.00 2.66
150 151 6.610456 CCAAAAACTGCATCAAAACAAAAGT 58.390 32.000 0.00 0.00 0.00 2.66
151 152 5.512434 GCCAAAAACTGCATCAAAACAAAAG 59.488 36.000 0.00 0.00 0.00 2.27
152 153 5.048504 TGCCAAAAACTGCATCAAAACAAAA 60.049 32.000 0.00 0.00 31.31 2.44
153 154 4.456911 TGCCAAAAACTGCATCAAAACAAA 59.543 33.333 0.00 0.00 31.31 2.83
154 155 4.005650 TGCCAAAAACTGCATCAAAACAA 58.994 34.783 0.00 0.00 31.31 2.83
155 156 3.373439 GTGCCAAAAACTGCATCAAAACA 59.627 39.130 0.00 0.00 40.07 2.83
156 157 3.622612 AGTGCCAAAAACTGCATCAAAAC 59.377 39.130 0.00 0.00 40.07 2.43
157 158 3.622163 CAGTGCCAAAAACTGCATCAAAA 59.378 39.130 0.00 0.00 38.72 2.44
158 159 3.196463 CAGTGCCAAAAACTGCATCAAA 58.804 40.909 0.00 0.00 38.72 2.69
159 160 2.483363 CCAGTGCCAAAAACTGCATCAA 60.483 45.455 0.00 0.00 43.06 2.57
160 161 1.068895 CCAGTGCCAAAAACTGCATCA 59.931 47.619 0.00 0.00 43.06 3.07
161 162 1.606224 CCCAGTGCCAAAAACTGCATC 60.606 52.381 0.00 0.00 43.06 3.91
162 163 0.393820 CCCAGTGCCAAAAACTGCAT 59.606 50.000 0.00 0.00 43.06 3.96
163 164 0.975040 ACCCAGTGCCAAAAACTGCA 60.975 50.000 0.00 0.00 43.06 4.41
164 165 0.530431 CACCCAGTGCCAAAAACTGC 60.530 55.000 0.00 0.00 43.06 4.40
165 166 1.110442 TCACCCAGTGCCAAAAACTG 58.890 50.000 0.00 0.00 43.84 3.16
166 167 1.480545 GTTCACCCAGTGCCAAAAACT 59.519 47.619 0.00 0.00 32.98 2.66
167 168 1.472552 GGTTCACCCAGTGCCAAAAAC 60.473 52.381 0.00 0.00 32.98 2.43
168 169 0.827368 GGTTCACCCAGTGCCAAAAA 59.173 50.000 0.00 0.00 32.98 1.94
169 170 2.510664 GGTTCACCCAGTGCCAAAA 58.489 52.632 0.00 0.00 32.98 2.44
170 171 4.268720 GGTTCACCCAGTGCCAAA 57.731 55.556 0.00 0.00 32.98 3.28
344 345 5.523552 TCTGCCGTTATAGAATGTTCATGTG 59.476 40.000 0.00 0.00 0.00 3.21
362 363 3.004315 TGGTTTTAGAAAAGCTTCTGCCG 59.996 43.478 15.65 0.00 44.37 5.69
364 365 6.914259 AGTATGGTTTTAGAAAAGCTTCTGC 58.086 36.000 15.65 6.60 44.37 4.26
477 480 8.570096 AATGCTTCCGTAGTTTTAAAAAGTTC 57.430 30.769 1.31 0.00 0.00 3.01
478 481 8.936070 AAATGCTTCCGTAGTTTTAAAAAGTT 57.064 26.923 1.31 0.00 0.00 2.66
520 523 9.877178 AAAACACACAAACATAATTTTCCTACA 57.123 25.926 0.00 0.00 0.00 2.74
552 769 6.536582 CCACACAACACAAACATAATTTTCCA 59.463 34.615 0.00 0.00 0.00 3.53
564 781 8.877779 CAAATAAGAAAATCCACACAACACAAA 58.122 29.630 0.00 0.00 0.00 2.83
569 786 9.921637 TTATCCAAATAAGAAAATCCACACAAC 57.078 29.630 0.00 0.00 0.00 3.32
595 812 3.848975 AGAAACAGGAACAGGATGGATCT 59.151 43.478 0.00 0.00 43.62 2.75
612 829 1.172812 GGGGCCACTCACACAGAAAC 61.173 60.000 4.39 0.00 0.00 2.78
626 843 1.483415 TCATGTACGTAGAAAGGGGCC 59.517 52.381 0.00 0.00 0.00 5.80
643 860 6.113411 CCTAACACGGAAATAGGAAACTCAT 58.887 40.000 0.00 0.00 43.67 2.90
658 875 3.841643 ACTGATTCGTAACCTAACACGG 58.158 45.455 0.00 0.00 38.66 4.94
675 893 5.806818 TCCACGGTTTCCATAATAAACTGA 58.193 37.500 12.99 0.00 43.05 3.41
677 895 7.363443 CCAAATCCACGGTTTCCATAATAAACT 60.363 37.037 0.00 0.00 37.09 2.66
682 900 4.605183 TCCAAATCCACGGTTTCCATAAT 58.395 39.130 0.00 0.00 0.00 1.28
698 916 2.159490 CGTATCGGCCGTTTTTCCAAAT 60.159 45.455 27.15 10.34 0.00 2.32
753 1005 9.298774 GCATATACAAACTCTAACGTACTCTTT 57.701 33.333 0.00 0.00 0.00 2.52
791 1043 2.297033 GGCATTCGTGGCATAATTCCAT 59.703 45.455 8.57 0.00 35.81 3.41
810 1062 3.578968 AAGTTTGGTAGGGCCCGGC 62.579 63.158 18.44 13.45 36.04 6.13
811 1063 1.677633 CAAGTTTGGTAGGGCCCGG 60.678 63.158 18.44 0.00 36.04 5.73
823 1075 2.625790 TCATTTACGGCCAAGCAAGTTT 59.374 40.909 2.24 0.00 0.00 2.66
829 1081 0.523335 CGCTTCATTTACGGCCAAGC 60.523 55.000 2.24 7.66 36.84 4.01
887 1139 2.856091 AGCTCAAACGTTCGAAATCG 57.144 45.000 0.00 2.52 41.45 3.34
904 1156 0.097150 GGCGACCGAGATTCAAAAGC 59.903 55.000 0.00 0.00 0.00 3.51
921 1173 1.532604 GGCCGGCCTATAAATTGGGC 61.533 60.000 38.76 6.46 43.00 5.36
937 1189 4.615815 AGATGAGATGCGGCGGCC 62.616 66.667 14.25 9.54 38.85 6.13
978 1234 1.070134 TCTTCTGTTGTTGGGGAGACG 59.930 52.381 0.00 0.00 0.00 4.18
979 1235 2.930826 TCTTCTGTTGTTGGGGAGAC 57.069 50.000 0.00 0.00 0.00 3.36
980 1236 3.943671 TTTCTTCTGTTGTTGGGGAGA 57.056 42.857 0.00 0.00 0.00 3.71
981 1237 3.256631 CCATTTCTTCTGTTGTTGGGGAG 59.743 47.826 0.00 0.00 0.00 4.30
1137 1415 1.905922 GCTTCTGCTTCACGGACTGC 61.906 60.000 0.00 0.00 31.67 4.40
1138 1416 1.621301 CGCTTCTGCTTCACGGACTG 61.621 60.000 0.00 0.00 36.97 3.51
1239 1620 6.981762 TTTTTGGGTATTAAAGATCGCGTA 57.018 33.333 5.77 0.00 0.00 4.42
1296 1945 7.122948 GGTTGGGTAGTCATCCTAGATACATAG 59.877 44.444 0.00 0.00 0.00 2.23
1297 1946 6.952358 GGTTGGGTAGTCATCCTAGATACATA 59.048 42.308 0.00 0.00 0.00 2.29
1298 1947 5.780793 GGTTGGGTAGTCATCCTAGATACAT 59.219 44.000 0.00 0.00 0.00 2.29
1299 1948 5.103215 AGGTTGGGTAGTCATCCTAGATACA 60.103 44.000 0.00 0.00 35.67 2.29
1300 1949 5.395611 AGGTTGGGTAGTCATCCTAGATAC 58.604 45.833 0.00 0.00 35.67 2.24
1301 1950 5.681494 AGGTTGGGTAGTCATCCTAGATA 57.319 43.478 0.00 0.00 35.67 1.98
1302 1951 4.561254 AGGTTGGGTAGTCATCCTAGAT 57.439 45.455 0.00 0.00 35.67 1.98
1303 1952 4.030913 CAAGGTTGGGTAGTCATCCTAGA 58.969 47.826 0.00 0.00 36.22 2.43
1304 1953 3.134804 CCAAGGTTGGGTAGTCATCCTAG 59.865 52.174 0.27 0.00 44.70 3.02
1350 1999 1.489230 GAATGATGGGGGTACGTTCCT 59.511 52.381 11.29 0.00 0.00 3.36
1352 2001 1.489230 AGGAATGATGGGGGTACGTTC 59.511 52.381 0.00 0.00 0.00 3.95
1353 2002 1.489230 GAGGAATGATGGGGGTACGTT 59.511 52.381 0.00 0.00 0.00 3.99
1354 2003 1.129058 GAGGAATGATGGGGGTACGT 58.871 55.000 0.00 0.00 0.00 3.57
1355 2004 1.344763 GAGAGGAATGATGGGGGTACG 59.655 57.143 0.00 0.00 0.00 3.67
1356 2005 1.700186 GGAGAGGAATGATGGGGGTAC 59.300 57.143 0.00 0.00 0.00 3.34
1358 2007 0.046242 TGGAGAGGAATGATGGGGGT 59.954 55.000 0.00 0.00 0.00 4.95
1359 2008 1.075050 CATGGAGAGGAATGATGGGGG 59.925 57.143 0.00 0.00 0.00 5.40
1385 2034 8.196802 ACAATCATCAATCAAATCAAATGCTG 57.803 30.769 0.00 0.00 0.00 4.41
1387 2036 9.834628 AAAACAATCATCAATCAAATCAAATGC 57.165 25.926 0.00 0.00 0.00 3.56
1402 2051 4.400567 CCCTCCTCCTTGAAAACAATCATC 59.599 45.833 0.00 0.00 0.00 2.92
1403 2052 4.347607 CCCTCCTCCTTGAAAACAATCAT 58.652 43.478 0.00 0.00 0.00 2.45
1418 2117 4.828925 GTGCTGCTCGCCCTCCTC 62.829 72.222 0.00 0.00 38.05 3.71
1550 2261 2.783135 TGAGACTGTTTCATGGGCTTC 58.217 47.619 0.00 0.00 0.00 3.86
1577 2288 0.902984 TTACGAGCCAGAAGCCTCCA 60.903 55.000 0.00 0.00 45.47 3.86
1606 2317 4.564041 AGTGAGTAATGCAAGAGTGAGTG 58.436 43.478 0.00 0.00 0.00 3.51
1623 2338 1.650528 AGGGAAGGGAGTGAAGTGAG 58.349 55.000 0.00 0.00 0.00 3.51
1635 2350 6.455647 GGTTTCAACTTTCAATAAGGGAAGG 58.544 40.000 0.00 0.00 0.00 3.46
1645 2360 3.685756 ACGAAGACGGTTTCAACTTTCAA 59.314 39.130 0.00 0.00 44.46 2.69
1651 2375 1.480205 TCGACGAAGACGGTTTCAAC 58.520 50.000 0.00 0.00 46.86 3.18
1654 2378 1.912110 CAGATCGACGAAGACGGTTTC 59.088 52.381 0.00 0.00 46.86 2.78
1655 2379 1.268899 ACAGATCGACGAAGACGGTTT 59.731 47.619 0.00 0.00 46.86 3.27
1656 2380 0.879765 ACAGATCGACGAAGACGGTT 59.120 50.000 0.00 0.00 46.86 4.44
1657 2381 0.447011 GACAGATCGACGAAGACGGT 59.553 55.000 0.00 3.69 46.86 4.83
1658 2382 0.727970 AGACAGATCGACGAAGACGG 59.272 55.000 0.00 0.34 46.86 4.79
1660 2384 3.064134 TCATCAGACAGATCGACGAAGAC 59.936 47.826 0.00 0.00 33.72 3.01
1661 2385 3.270877 TCATCAGACAGATCGACGAAGA 58.729 45.455 0.00 0.00 33.72 2.87
1662 2386 3.682372 TCATCAGACAGATCGACGAAG 57.318 47.619 0.00 0.00 33.72 3.79
1663 2387 4.142381 ACAATCATCAGACAGATCGACGAA 60.142 41.667 0.00 0.00 33.72 3.85
1664 2388 3.378427 ACAATCATCAGACAGATCGACGA 59.622 43.478 0.00 0.00 33.72 4.20
1665 2389 3.485013 CACAATCATCAGACAGATCGACG 59.515 47.826 0.00 0.00 33.72 5.12
1666 2390 3.801050 CCACAATCATCAGACAGATCGAC 59.199 47.826 0.00 0.00 33.72 4.20
1670 2394 2.422519 GCCCCACAATCATCAGACAGAT 60.423 50.000 0.00 0.00 37.48 2.90
1678 2429 0.965363 ACCAACGCCCCACAATCATC 60.965 55.000 0.00 0.00 0.00 2.92
1690 2441 0.313672 TCAGCAATCCAAACCAACGC 59.686 50.000 0.00 0.00 0.00 4.84
1696 2459 0.244721 GCCCTGTCAGCAATCCAAAC 59.755 55.000 0.00 0.00 0.00 2.93
1758 2521 5.011090 TCGTCCTCCAAAGTGATTCTATG 57.989 43.478 0.00 0.00 0.00 2.23
1763 2526 2.234908 CTCCTCGTCCTCCAAAGTGATT 59.765 50.000 0.00 0.00 0.00 2.57
1778 2541 0.663688 CATACTCGTCACCCTCCTCG 59.336 60.000 0.00 0.00 0.00 4.63
1789 2552 3.015327 AGGTAGAGCGTTTCATACTCGT 58.985 45.455 0.00 0.00 35.56 4.18
1796 2559 4.883026 GCGAGGTAGAGCGTTTCA 57.117 55.556 0.00 0.00 0.00 2.69
1846 2609 1.148273 TTGTGCTCCAAGGCGAACT 59.852 52.632 0.00 0.00 34.52 3.01
1956 2724 9.081508 ACTAGAGGACATATATAGGGTTCCATA 57.918 37.037 0.00 0.00 0.00 2.74
1980 2775 2.645838 AGTGCACAACCATTCTCACT 57.354 45.000 21.04 0.00 0.00 3.41
2005 2800 0.727398 GCCGGCGCATATCCTAATTC 59.273 55.000 12.58 0.00 34.03 2.17
2011 2806 2.899838 TGTTGCCGGCGCATATCC 60.900 61.111 23.90 4.39 46.67 2.59
2012 2807 2.327940 GTGTTGCCGGCGCATATC 59.672 61.111 23.90 7.98 46.67 1.63
2013 2808 3.209097 GGTGTTGCCGGCGCATAT 61.209 61.111 23.90 0.00 46.67 1.78
2014 2809 3.910914 AAGGTGTTGCCGGCGCATA 62.911 57.895 23.90 6.34 46.67 3.14
2019 2814 1.315257 ATGATGAAGGTGTTGCCGGC 61.315 55.000 22.73 22.73 43.70 6.13
2020 2815 0.734889 GATGATGAAGGTGTTGCCGG 59.265 55.000 0.00 0.00 43.70 6.13
2021 2816 1.742761 AGATGATGAAGGTGTTGCCG 58.257 50.000 0.00 0.00 43.70 5.69
2395 3215 7.073883 CGGTGTAATATGATTGAGCTTCAATG 58.926 38.462 13.78 0.00 46.20 2.82
2434 3582 5.242069 TGCATCATTTACATAACAACGGG 57.758 39.130 0.00 0.00 0.00 5.28
2499 3647 7.290948 TCTCAGTATATCACACCCTCATGATTT 59.709 37.037 0.00 0.00 36.87 2.17
2538 3686 2.052782 ACAAATTACCCGCTCCCATC 57.947 50.000 0.00 0.00 0.00 3.51
2653 3803 3.902465 CGAAAACAGAAGCTTCACGATTG 59.098 43.478 27.57 18.33 0.00 2.67
2663 3813 5.024555 GCAGAATCATACGAAAACAGAAGC 58.975 41.667 0.00 0.00 0.00 3.86
2683 3833 1.204467 ACACAAAATTATGGCGGGCAG 59.796 47.619 10.83 0.00 0.00 4.85
2692 3842 5.149973 TGCAATGCAGGACACAAAATTAT 57.850 34.783 2.72 0.00 33.32 1.28
2765 3915 6.151144 GCATCCCTGTAATCAACTAGTTTTGT 59.849 38.462 5.07 0.00 0.00 2.83
2848 3998 5.837437 AGTAGAGTCTTTCATAAGCCATCG 58.163 41.667 0.00 0.00 0.00 3.84
2853 4003 7.535599 GCAACAAAAGTAGAGTCTTTCATAAGC 59.464 37.037 0.00 0.00 36.75 3.09
2930 4080 9.708222 CTAATATTGATGCACAAAACTACAGAC 57.292 33.333 0.00 0.00 42.03 3.51
2955 4105 6.200878 TCCAAGAACTTCCCTATGAAAACT 57.799 37.500 0.00 0.00 31.06 2.66
2967 4117 6.205464 TGTTTCTGTGATCATCCAAGAACTTC 59.795 38.462 0.00 1.99 0.00 3.01
2993 4143 4.159879 GCAAGGTGTGTGGTAGACTAGTAT 59.840 45.833 0.00 0.00 0.00 2.12
3055 4205 8.188139 TCAAAATGTAGAAAGAACTTGGTTGAC 58.812 33.333 0.00 0.00 0.00 3.18
3087 4237 8.530311 AGATATGACAGTTCATGGTCAGATATC 58.470 37.037 9.12 10.52 43.67 1.63
3095 4245 5.072329 CCCCTTAGATATGACAGTTCATGGT 59.928 44.000 0.00 0.00 42.79 3.55
3114 4265 4.948062 AGTAACCTAAAGCATTCCCCTT 57.052 40.909 0.00 0.00 0.00 3.95
3188 4339 1.017387 GCTATGTAAGTGCTGGTGGC 58.983 55.000 0.00 0.00 42.22 5.01
3202 4353 3.377346 AGTGCGGAAGTAGATGCTATG 57.623 47.619 0.00 0.00 0.00 2.23
3205 4356 1.550524 TGAAGTGCGGAAGTAGATGCT 59.449 47.619 0.00 0.00 0.00 3.79
3206 4357 2.010145 TGAAGTGCGGAAGTAGATGC 57.990 50.000 0.00 0.00 0.00 3.91
3273 4428 9.516314 CAACTGAAAAGTTAGTAAAAAGGGAAG 57.484 33.333 0.00 0.00 0.00 3.46
3283 4438 8.338072 TGACCAAAACAACTGAAAAGTTAGTA 57.662 30.769 0.00 0.00 0.00 1.82
3284 4439 7.222000 TGACCAAAACAACTGAAAAGTTAGT 57.778 32.000 0.00 0.00 0.00 2.24
3288 4443 7.763985 CCTAATTGACCAAAACAACTGAAAAGT 59.236 33.333 0.00 0.00 0.00 2.66
3289 4444 7.763985 ACCTAATTGACCAAAACAACTGAAAAG 59.236 33.333 0.00 0.00 0.00 2.27
3293 4448 6.126409 AGACCTAATTGACCAAAACAACTGA 58.874 36.000 0.00 0.00 0.00 3.41
3294 4449 6.391227 AGACCTAATTGACCAAAACAACTG 57.609 37.500 0.00 0.00 0.00 3.16
3295 4450 7.287810 AGTAGACCTAATTGACCAAAACAACT 58.712 34.615 0.00 0.00 0.00 3.16
3296 4451 7.506328 AGTAGACCTAATTGACCAAAACAAC 57.494 36.000 0.00 0.00 0.00 3.32
3379 4534 9.143155 GGTTCCCATATAAAAGTCCAAACATAT 57.857 33.333 0.00 0.00 0.00 1.78
3425 4580 1.560505 ACAAGGATGGGGAAACATGC 58.439 50.000 0.00 0.00 39.21 4.06
3460 4615 8.682710 GCATAGTAGGTTAAATTGGAAATCACA 58.317 33.333 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.