Multiple sequence alignment - TraesCS3A01G533600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G533600 chr3A 100.000 4636 0 0 1 4636 746178221 746173586 0.000000e+00 8562.0
1 TraesCS3A01G533600 chr3A 78.390 1453 243 52 2208 3609 746088735 746087303 0.000000e+00 878.0
2 TraesCS3A01G533600 chr3A 74.439 1248 227 58 2391 3580 746187773 746188986 1.970000e-123 453.0
3 TraesCS3A01G533600 chr3A 81.690 284 42 6 1876 2158 746187170 746187444 1.300000e-55 228.0
4 TraesCS3A01G533600 chr3A 98.020 101 2 0 4002 4102 218263313 218263213 4.770000e-40 176.0
5 TraesCS3A01G533600 chr3A 93.103 116 7 1 3995 4109 693492031 693492146 7.980000e-38 169.0
6 TraesCS3A01G533600 chr3D 91.262 2678 134 30 1 2608 611255384 611252737 0.000000e+00 3557.0
7 TraesCS3A01G533600 chr3D 92.394 1157 57 10 2662 3792 611252737 611251586 0.000000e+00 1620.0
8 TraesCS3A01G533600 chr3D 75.876 1256 218 50 2391 3580 611297024 611298260 3.130000e-156 562.0
9 TraesCS3A01G533600 chr3D 73.987 1234 230 57 2198 3380 611217725 611216532 2.580000e-112 416.0
10 TraesCS3A01G533600 chr3D 92.609 230 15 1 4409 4636 611249497 611249268 3.460000e-86 329.0
11 TraesCS3A01G533600 chr3D 88.364 275 30 2 3731 4004 611250714 611250441 3.460000e-86 329.0
12 TraesCS3A01G533600 chr3D 77.104 511 90 15 1672 2172 611212259 611211766 2.130000e-68 270.0
13 TraesCS3A01G533600 chr3D 81.469 286 41 7 1876 2158 611296446 611296722 1.680000e-54 224.0
14 TraesCS3A01G533600 chr3D 95.327 107 5 0 4003 4109 5847042 5846936 2.220000e-38 171.0
15 TraesCS3A01G533600 chr3D 95.327 107 5 0 4003 4109 387025983 387025877 2.220000e-38 171.0
16 TraesCS3A01G533600 chr3B 89.226 1680 101 38 868 2515 829015876 829014245 0.000000e+00 2026.0
17 TraesCS3A01G533600 chr3B 93.705 1112 49 10 2554 3649 829014237 829013131 0.000000e+00 1646.0
18 TraesCS3A01G533600 chr3B 90.834 851 46 8 1 831 829016711 829015873 0.000000e+00 1110.0
19 TraesCS3A01G533600 chr3B 78.936 940 153 34 2704 3609 828918425 828917497 8.590000e-167 597.0
20 TraesCS3A01G533600 chr3B 74.441 1252 228 55 2391 3580 829038990 829040211 5.470000e-124 455.0
21 TraesCS3A01G533600 chr3B 87.709 358 42 2 3650 4007 829013102 829012747 2.580000e-112 416.0
22 TraesCS3A01G533600 chr3B 89.286 308 25 7 4106 4413 829012814 829012515 3.390000e-101 379.0
23 TraesCS3A01G533600 chr3B 76.908 524 94 15 1672 2185 828993909 828993403 5.910000e-69 272.0
24 TraesCS3A01G533600 chr7D 94.690 113 6 0 3997 4109 196009063 196009175 4.770000e-40 176.0
25 TraesCS3A01G533600 chr7D 95.327 107 5 0 4003 4109 328590506 328590612 2.220000e-38 171.0
26 TraesCS3A01G533600 chr7B 95.327 107 5 0 4003 4109 462415448 462415554 2.220000e-38 171.0
27 TraesCS3A01G533600 chr6B 95.327 107 5 0 4003 4109 687253262 687253156 2.220000e-38 171.0
28 TraesCS3A01G533600 chr1A 94.393 107 6 0 4003 4109 209583873 209583767 1.030000e-36 165.0
29 TraesCS3A01G533600 chr1B 83.838 99 15 1 3909 4007 151471574 151471477 4.940000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G533600 chr3A 746173586 746178221 4635 True 8562.00 8562 100.00000 1 4636 1 chr3A.!!$R3 4635
1 TraesCS3A01G533600 chr3A 746087303 746088735 1432 True 878.00 878 78.39000 2208 3609 1 chr3A.!!$R2 1401
2 TraesCS3A01G533600 chr3A 746187170 746188986 1816 False 340.50 453 78.06450 1876 3580 2 chr3A.!!$F2 1704
3 TraesCS3A01G533600 chr3D 611249268 611255384 6116 True 1458.75 3557 91.15725 1 4636 4 chr3D.!!$R5 4635
4 TraesCS3A01G533600 chr3D 611216532 611217725 1193 True 416.00 416 73.98700 2198 3380 1 chr3D.!!$R4 1182
5 TraesCS3A01G533600 chr3D 611296446 611298260 1814 False 393.00 562 78.67250 1876 3580 2 chr3D.!!$F1 1704
6 TraesCS3A01G533600 chr3B 829012515 829016711 4196 True 1115.40 2026 90.15200 1 4413 5 chr3B.!!$R3 4412
7 TraesCS3A01G533600 chr3B 828917497 828918425 928 True 597.00 597 78.93600 2704 3609 1 chr3B.!!$R1 905
8 TraesCS3A01G533600 chr3B 829038990 829040211 1221 False 455.00 455 74.44100 2391 3580 1 chr3B.!!$F1 1189
9 TraesCS3A01G533600 chr3B 828993403 828993909 506 True 272.00 272 76.90800 1672 2185 1 chr3B.!!$R2 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 768 0.463204 AGCCACGGACTGATGAGATG 59.537 55.0 0.0 0.0 0.00 2.90 F
1550 1608 0.040058 ATCAAGCACATGCCTCCCAA 59.960 50.0 0.0 0.0 43.38 4.12 F
2034 2110 0.313672 GTCGCCATTTTGGTTGCTCA 59.686 50.0 0.0 0.0 40.46 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 2652 1.406614 CCTGGAGGTGAATGACTCTGC 60.407 57.143 0.00 0.0 34.22 4.26 R
2860 3101 1.001633 TCTGCCGGGAAGAAACACTAC 59.998 52.381 0.91 0.0 0.00 2.73 R
3890 5132 0.392461 GGGTGTCATCTGGCGCTTTA 60.392 55.000 7.64 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.650116 GGAGGCCGTGAGAGAAGCA 61.650 63.158 0.00 0.00 0.00 3.91
99 100 2.676471 GCCACGTGAATTGGGCCT 60.676 61.111 19.30 0.00 40.55 5.19
110 111 5.564550 GTGAATTGGGCCTCAGATGTATAT 58.435 41.667 4.53 0.00 0.00 0.86
285 305 2.125673 CGCCGGGTAAGACCACAG 60.126 66.667 2.18 0.00 41.02 3.66
318 338 2.027625 CACCTTCGGTTCCACGCTC 61.028 63.158 0.00 0.00 31.02 5.03
320 340 2.809601 CTTCGGTTCCACGCTCCG 60.810 66.667 0.00 0.00 44.76 4.63
446 466 2.126071 TACAGCGCCTTCGACAGC 60.126 61.111 2.29 0.00 38.10 4.40
512 532 4.675029 CGGACGTGTTTCCCCGCT 62.675 66.667 0.00 0.00 35.29 5.52
529 549 4.147449 TGCCGAGGCGTCATGAGG 62.147 66.667 11.07 11.07 45.51 3.86
622 643 1.980765 AGAGAAATCCAGGCTGTGTGA 59.019 47.619 14.43 3.94 0.00 3.58
623 644 2.027377 AGAGAAATCCAGGCTGTGTGAG 60.027 50.000 14.43 0.00 0.00 3.51
624 645 1.701847 AGAAATCCAGGCTGTGTGAGT 59.298 47.619 14.43 0.00 0.00 3.41
625 646 1.808945 GAAATCCAGGCTGTGTGAGTG 59.191 52.381 14.43 0.00 0.00 3.51
692 715 7.378194 GCGTCCTTTATTAGTAAGTAGTGTAGC 59.622 40.741 0.00 0.00 0.00 3.58
745 768 0.463204 AGCCACGGACTGATGAGATG 59.537 55.000 0.00 0.00 0.00 2.90
748 771 1.284657 CACGGACTGATGAGATGTGC 58.715 55.000 0.00 0.00 0.00 4.57
773 796 6.096846 CGAATAATTGAATCCCCTTTTGAGGT 59.903 38.462 0.00 0.00 0.00 3.85
774 797 7.363793 CGAATAATTGAATCCCCTTTTGAGGTT 60.364 37.037 0.00 0.00 0.00 3.50
812 835 4.754114 GTGCTAATCTTATCTTGGCTCCAG 59.246 45.833 0.00 0.00 31.99 3.86
829 852 2.240414 TCCAGTGTCATCCATTGCTCAT 59.760 45.455 0.00 0.00 29.82 2.90
835 858 3.285484 GTCATCCATTGCTCATTGGTCT 58.715 45.455 9.73 0.00 34.40 3.85
1072 1119 3.087253 CACCGGTATGGGGGCTCA 61.087 66.667 6.87 0.00 44.64 4.26
1074 1121 4.235762 CCGGTATGGGGGCTCACG 62.236 72.222 0.00 0.00 0.00 4.35
1077 1124 2.676265 GGTATGGGGGCTCACGGTT 61.676 63.158 0.00 0.00 0.00 4.44
1086 1133 2.281761 CTCACGGTTGCTGCCCTT 60.282 61.111 0.00 0.00 0.00 3.95
1182 1229 2.122167 CGCGCTTACCCTCCTCTCT 61.122 63.158 5.56 0.00 0.00 3.10
1215 1262 4.557705 AGAAGGGTGCAGGTACACTATAT 58.442 43.478 0.00 0.00 40.52 0.86
1216 1263 5.712752 AGAAGGGTGCAGGTACACTATATA 58.287 41.667 0.00 0.00 40.52 0.86
1444 1498 5.879237 TGAGTTAGGCAAATCAAATTAGCG 58.121 37.500 0.00 0.00 35.91 4.26
1455 1509 2.564947 TCAAATTAGCGGCCACCAAAAT 59.435 40.909 2.24 0.00 0.00 1.82
1549 1607 0.681887 CATCAAGCACATGCCTCCCA 60.682 55.000 0.00 0.00 43.38 4.37
1550 1608 0.040058 ATCAAGCACATGCCTCCCAA 59.960 50.000 0.00 0.00 43.38 4.12
1555 1613 0.682209 GCACATGCCTCCCAATGTCT 60.682 55.000 0.00 0.00 34.31 3.41
1586 1644 9.748708 TTTCTTTTCTATCAAAAATGTGGTCTG 57.251 29.630 0.00 0.00 0.00 3.51
1708 1772 3.144506 CAGCACAGTCAAGGAATGTTCT 58.855 45.455 0.00 0.00 38.84 3.01
1842 1907 2.378886 TCTCTCTTGTAGTGACCCCTCA 59.621 50.000 0.00 0.00 0.00 3.86
1855 1920 3.244770 TGACCCCTCACTATTTGTTCCAC 60.245 47.826 0.00 0.00 0.00 4.02
1867 1932 1.909700 TGTTCCACCTCTTTCCATGC 58.090 50.000 0.00 0.00 0.00 4.06
2020 2096 2.544694 CCTCTGTCTGATGTATGTCGCC 60.545 54.545 0.00 0.00 0.00 5.54
2021 2097 2.099405 TCTGTCTGATGTATGTCGCCA 58.901 47.619 0.00 0.00 0.00 5.69
2034 2110 0.313672 GTCGCCATTTTGGTTGCTCA 59.686 50.000 0.00 0.00 40.46 4.26
2140 2219 4.437682 ACTCATGGAAAAAGGACTCACA 57.562 40.909 0.00 0.00 0.00 3.58
2146 2225 3.703556 TGGAAAAAGGACTCACAAATGCA 59.296 39.130 0.00 0.00 0.00 3.96
2157 2236 2.957680 TCACAAATGCAACACAGGTCAT 59.042 40.909 0.00 0.00 0.00 3.06
2158 2237 3.004629 TCACAAATGCAACACAGGTCATC 59.995 43.478 0.00 0.00 0.00 2.92
2159 2238 2.957680 ACAAATGCAACACAGGTCATCA 59.042 40.909 0.00 0.00 0.00 3.07
2332 2480 5.275067 AGGTTTCAGTTAAATGCTTTGCA 57.725 34.783 0.00 0.00 44.86 4.08
2387 2567 8.947115 GCTCTTGAAAATAAATGTACCACTAGT 58.053 33.333 0.00 0.00 0.00 2.57
2405 2587 5.470098 CACTAGTGTTGCACCTGAACTAAAT 59.530 40.000 15.06 0.00 34.49 1.40
2412 2594 4.980573 TGCACCTGAACTAAATTACCACT 58.019 39.130 0.00 0.00 0.00 4.00
2467 2652 1.477295 GTCCCTTTGGTCTCTCTACGG 59.523 57.143 0.00 0.00 0.00 4.02
2516 2701 5.757886 TGCCGAACATTCTTGAAACTTTAG 58.242 37.500 0.00 0.00 0.00 1.85
2528 2713 6.425114 TCTTGAAACTTTAGCAGACATGTCTC 59.575 38.462 25.58 18.77 37.98 3.36
2548 2734 8.668510 TGTCTCATTTATATTCAAGCCTTCTC 57.331 34.615 0.00 0.00 0.00 2.87
2559 2745 2.928757 CAAGCCTTCTCGTCATCTTCTG 59.071 50.000 0.00 0.00 0.00 3.02
2668 2893 3.120060 CCTAGCGATTGATGCTATTTGGC 60.120 47.826 0.00 0.00 43.50 4.52
2671 2896 2.223548 GCGATTGATGCTATTTGGCACA 60.224 45.455 0.00 0.00 45.36 4.57
2691 2918 6.642683 CACAAAATGCCATTGAGATCTTTC 57.357 37.500 0.00 0.00 0.00 2.62
2700 2929 5.121811 CCATTGAGATCTTTCCGTCTTCAT 58.878 41.667 0.00 0.00 0.00 2.57
2788 3017 2.093341 GCCAACCGAGGTAGTTTCCATA 60.093 50.000 0.00 0.00 0.00 2.74
2789 3018 3.433173 GCCAACCGAGGTAGTTTCCATAT 60.433 47.826 0.00 0.00 0.00 1.78
2860 3101 9.195831 GTTCGTTAGCTAAAATAATGTTTCTCG 57.804 33.333 7.99 2.98 0.00 4.04
2887 3128 0.753262 TCTTCCCGGCAGAGCTTATC 59.247 55.000 0.00 0.00 0.00 1.75
2945 3186 6.169094 CCTAGTTATGATTCATGGCAGGTAG 58.831 44.000 9.46 2.53 0.00 3.18
2983 3228 6.463995 TCTTGTTTTTATATCCATGTGCCC 57.536 37.500 0.00 0.00 0.00 5.36
2999 3244 2.673368 GTGCCCGTGTTAGAATTCTCAG 59.327 50.000 12.24 0.25 0.00 3.35
3191 3444 2.034558 ACCTTCAGCACAAATGGTTTCG 59.965 45.455 0.00 0.00 33.06 3.46
3192 3445 2.607771 CCTTCAGCACAAATGGTTTCGG 60.608 50.000 0.00 0.00 33.06 4.30
3237 3493 7.069455 TGTTGTTCTTCTCCATCGATAGGATTA 59.931 37.037 14.41 6.19 33.99 1.75
3392 3648 7.276438 GCTTGAAAATAAGGCATGGAGTTAAAG 59.724 37.037 0.00 0.00 0.00 1.85
3419 3679 4.629634 TGACTACCAAATCACATTGCGTAG 59.370 41.667 11.03 11.03 38.55 3.51
3614 3899 3.935203 CTCCACGAGATGTTACTGCATTT 59.065 43.478 0.00 0.00 0.00 2.32
3619 3904 3.684305 CGAGATGTTACTGCATTTGACCA 59.316 43.478 0.00 0.00 0.00 4.02
3666 3979 5.303259 TCAAGCATATTGTACTGGCCATA 57.697 39.130 5.51 0.00 0.00 2.74
3670 3983 7.123397 TCAAGCATATTGTACTGGCCATAAAAA 59.877 33.333 5.51 0.00 0.00 1.94
3800 5042 9.338291 CTGACATTTGTAATGACTTTGATCTTG 57.662 33.333 6.42 0.00 0.00 3.02
3827 5069 9.941664 CTGTTATTAATGATTAAGGTCTGCAAG 57.058 33.333 3.83 0.00 0.00 4.01
3837 5079 0.110056 GGTCTGCAAGTGACAATGCG 60.110 55.000 6.88 4.57 45.47 4.73
3842 5084 1.210931 CAAGTGACAATGCGCCCAG 59.789 57.895 4.18 0.00 0.00 4.45
3852 5094 0.244450 ATGCGCCCAGTGAAAATGTG 59.756 50.000 4.18 0.00 0.00 3.21
3900 5142 7.073342 AGTTATTTAGAGTTTAAAGCGCCAG 57.927 36.000 2.29 0.00 0.00 4.85
3905 5147 3.003480 AGAGTTTAAAGCGCCAGATGAC 58.997 45.455 2.29 0.00 0.00 3.06
3906 5148 2.742053 GAGTTTAAAGCGCCAGATGACA 59.258 45.455 2.29 0.00 0.00 3.58
3914 5156 1.302511 GCCAGATGACACCCACGTT 60.303 57.895 0.00 0.00 0.00 3.99
3915 5157 1.577328 GCCAGATGACACCCACGTTG 61.577 60.000 0.00 0.00 0.00 4.10
3917 5159 1.302511 AGATGACACCCACGTTGCC 60.303 57.895 0.00 0.00 0.00 4.52
3918 5160 1.599518 GATGACACCCACGTTGCCA 60.600 57.895 0.00 0.00 0.00 4.92
3919 5161 1.577328 GATGACACCCACGTTGCCAG 61.577 60.000 0.00 0.00 0.00 4.85
3921 5163 1.525077 GACACCCACGTTGCCAGAA 60.525 57.895 0.00 0.00 0.00 3.02
3932 5174 2.229792 GTTGCCAGAACCATGACTTGA 58.770 47.619 0.00 0.00 0.00 3.02
3943 5185 4.115516 ACCATGACTTGATTTCGAGATCG 58.884 43.478 10.98 0.00 41.45 3.69
3963 5205 3.512329 TCGTATGGGTTTCAACTCTAGCA 59.488 43.478 0.00 0.00 0.00 3.49
3964 5206 4.161565 TCGTATGGGTTTCAACTCTAGCAT 59.838 41.667 0.00 0.00 0.00 3.79
3965 5207 5.361571 TCGTATGGGTTTCAACTCTAGCATA 59.638 40.000 0.00 0.00 0.00 3.14
3966 5208 6.041637 TCGTATGGGTTTCAACTCTAGCATAT 59.958 38.462 0.00 0.00 0.00 1.78
3967 5209 6.366332 CGTATGGGTTTCAACTCTAGCATATC 59.634 42.308 0.00 0.00 0.00 1.63
3968 5210 5.036117 TGGGTTTCAACTCTAGCATATCC 57.964 43.478 0.00 0.00 0.00 2.59
3969 5211 4.141482 TGGGTTTCAACTCTAGCATATCCC 60.141 45.833 0.00 0.00 0.00 3.85
3970 5212 4.141482 GGGTTTCAACTCTAGCATATCCCA 60.141 45.833 0.00 0.00 0.00 4.37
3971 5213 5.437060 GGTTTCAACTCTAGCATATCCCAA 58.563 41.667 0.00 0.00 0.00 4.12
3972 5214 5.297029 GGTTTCAACTCTAGCATATCCCAAC 59.703 44.000 0.00 0.00 0.00 3.77
3973 5215 5.957771 TTCAACTCTAGCATATCCCAACT 57.042 39.130 0.00 0.00 0.00 3.16
3974 5216 5.957771 TCAACTCTAGCATATCCCAACTT 57.042 39.130 0.00 0.00 0.00 2.66
3975 5217 5.674525 TCAACTCTAGCATATCCCAACTTG 58.325 41.667 0.00 0.00 0.00 3.16
3976 5218 5.189736 TCAACTCTAGCATATCCCAACTTGT 59.810 40.000 0.00 0.00 0.00 3.16
3977 5219 5.700402 ACTCTAGCATATCCCAACTTGTT 57.300 39.130 0.00 0.00 0.00 2.83
3978 5220 6.067217 ACTCTAGCATATCCCAACTTGTTT 57.933 37.500 0.00 0.00 0.00 2.83
3979 5221 5.882557 ACTCTAGCATATCCCAACTTGTTTG 59.117 40.000 0.00 0.00 34.63 2.93
3980 5222 6.061022 TCTAGCATATCCCAACTTGTTTGA 57.939 37.500 0.00 0.00 37.39 2.69
3981 5223 6.115446 TCTAGCATATCCCAACTTGTTTGAG 58.885 40.000 0.00 0.00 37.39 3.02
3982 5224 4.922206 AGCATATCCCAACTTGTTTGAGA 58.078 39.130 0.00 0.00 37.39 3.27
3983 5225 4.702131 AGCATATCCCAACTTGTTTGAGAC 59.298 41.667 0.00 0.00 37.39 3.36
3984 5226 4.702131 GCATATCCCAACTTGTTTGAGACT 59.298 41.667 0.00 0.00 37.39 3.24
3985 5227 5.163713 GCATATCCCAACTTGTTTGAGACTC 60.164 44.000 0.00 0.00 37.39 3.36
3986 5228 3.924114 TCCCAACTTGTTTGAGACTCA 57.076 42.857 0.00 0.00 37.39 3.41
3987 5229 4.229304 TCCCAACTTGTTTGAGACTCAA 57.771 40.909 13.99 13.99 37.39 3.02
3988 5230 4.594970 TCCCAACTTGTTTGAGACTCAAA 58.405 39.130 23.67 23.67 43.37 2.69
3989 5231 4.640201 TCCCAACTTGTTTGAGACTCAAAG 59.360 41.667 27.08 19.11 45.83 2.77
3990 5232 4.202050 CCCAACTTGTTTGAGACTCAAAGG 60.202 45.833 27.08 22.08 45.83 3.11
3991 5233 4.354587 CAACTTGTTTGAGACTCAAAGGC 58.645 43.478 27.08 18.06 45.83 4.35
3992 5234 3.891049 ACTTGTTTGAGACTCAAAGGCT 58.109 40.909 27.08 10.26 45.83 4.58
3993 5235 4.273318 ACTTGTTTGAGACTCAAAGGCTT 58.727 39.130 27.08 12.11 45.83 4.35
3994 5236 4.706962 ACTTGTTTGAGACTCAAAGGCTTT 59.293 37.500 27.08 6.68 45.83 3.51
3995 5237 4.637483 TGTTTGAGACTCAAAGGCTTTG 57.363 40.909 29.60 29.60 45.83 2.77
3996 5238 4.016444 TGTTTGAGACTCAAAGGCTTTGT 58.984 39.130 32.46 19.14 45.83 2.83
3997 5239 4.462483 TGTTTGAGACTCAAAGGCTTTGTT 59.538 37.500 32.46 23.10 45.83 2.83
3998 5240 4.637483 TTGAGACTCAAAGGCTTTGTTG 57.363 40.909 32.46 27.31 41.36 3.33
3999 5241 2.358898 TGAGACTCAAAGGCTTTGTTGC 59.641 45.455 32.46 23.17 41.36 4.17
4000 5242 2.620585 GAGACTCAAAGGCTTTGTTGCT 59.379 45.455 32.46 26.41 41.36 3.91
4001 5243 2.360165 AGACTCAAAGGCTTTGTTGCTG 59.640 45.455 32.46 21.56 41.36 4.41
4002 5244 2.099756 GACTCAAAGGCTTTGTTGCTGT 59.900 45.455 32.46 23.83 41.36 4.40
4003 5245 3.287222 ACTCAAAGGCTTTGTTGCTGTA 58.713 40.909 32.46 15.42 41.36 2.74
4004 5246 3.066760 ACTCAAAGGCTTTGTTGCTGTAC 59.933 43.478 32.46 0.00 41.36 2.90
4005 5247 3.287222 TCAAAGGCTTTGTTGCTGTACT 58.713 40.909 32.46 0.00 41.36 2.73
4006 5248 3.315191 TCAAAGGCTTTGTTGCTGTACTC 59.685 43.478 32.46 0.00 41.36 2.59
4007 5249 1.897560 AGGCTTTGTTGCTGTACTCC 58.102 50.000 0.00 0.00 0.00 3.85
4008 5250 0.881796 GGCTTTGTTGCTGTACTCCC 59.118 55.000 0.00 0.00 0.00 4.30
4009 5251 1.545651 GGCTTTGTTGCTGTACTCCCT 60.546 52.381 0.00 0.00 0.00 4.20
4010 5252 1.807142 GCTTTGTTGCTGTACTCCCTC 59.193 52.381 0.00 0.00 0.00 4.30
4011 5253 2.427506 CTTTGTTGCTGTACTCCCTCC 58.572 52.381 0.00 0.00 0.00 4.30
4012 5254 1.429930 TTGTTGCTGTACTCCCTCCA 58.570 50.000 0.00 0.00 0.00 3.86
4013 5255 1.656587 TGTTGCTGTACTCCCTCCAT 58.343 50.000 0.00 0.00 0.00 3.41
4014 5256 1.985159 TGTTGCTGTACTCCCTCCATT 59.015 47.619 0.00 0.00 0.00 3.16
4015 5257 2.375174 TGTTGCTGTACTCCCTCCATTT 59.625 45.455 0.00 0.00 0.00 2.32
4016 5258 3.181434 TGTTGCTGTACTCCCTCCATTTT 60.181 43.478 0.00 0.00 0.00 1.82
4017 5259 3.806949 TGCTGTACTCCCTCCATTTTT 57.193 42.857 0.00 0.00 0.00 1.94
4018 5260 4.919774 TGCTGTACTCCCTCCATTTTTA 57.080 40.909 0.00 0.00 0.00 1.52
4019 5261 5.450818 TGCTGTACTCCCTCCATTTTTAT 57.549 39.130 0.00 0.00 0.00 1.40
4020 5262 6.569127 TGCTGTACTCCCTCCATTTTTATA 57.431 37.500 0.00 0.00 0.00 0.98
4021 5263 7.149202 TGCTGTACTCCCTCCATTTTTATAT 57.851 36.000 0.00 0.00 0.00 0.86
4022 5264 8.270137 TGCTGTACTCCCTCCATTTTTATATA 57.730 34.615 0.00 0.00 0.00 0.86
4023 5265 8.154856 TGCTGTACTCCCTCCATTTTTATATAC 58.845 37.037 0.00 0.00 0.00 1.47
4024 5266 8.154856 GCTGTACTCCCTCCATTTTTATATACA 58.845 37.037 0.00 0.00 0.00 2.29
4027 5269 9.503399 GTACTCCCTCCATTTTTATATACAAGG 57.497 37.037 0.00 0.00 0.00 3.61
4028 5270 7.004691 ACTCCCTCCATTTTTATATACAAGGC 58.995 38.462 0.00 0.00 0.00 4.35
4029 5271 6.311735 TCCCTCCATTTTTATATACAAGGCC 58.688 40.000 0.00 0.00 0.00 5.19
4030 5272 6.074648 CCCTCCATTTTTATATACAAGGCCA 58.925 40.000 5.01 0.00 0.00 5.36
4031 5273 6.015434 CCCTCCATTTTTATATACAAGGCCAC 60.015 42.308 5.01 0.00 0.00 5.01
4032 5274 6.549364 CCTCCATTTTTATATACAAGGCCACA 59.451 38.462 5.01 0.00 0.00 4.17
4033 5275 7.069331 CCTCCATTTTTATATACAAGGCCACAA 59.931 37.037 5.01 0.00 0.00 3.33
4034 5276 8.367660 TCCATTTTTATATACAAGGCCACAAA 57.632 30.769 5.01 0.00 0.00 2.83
4035 5277 8.254508 TCCATTTTTATATACAAGGCCACAAAC 58.745 33.333 5.01 0.00 0.00 2.93
4036 5278 8.257306 CCATTTTTATATACAAGGCCACAAACT 58.743 33.333 5.01 0.00 0.00 2.66
4037 5279 9.301153 CATTTTTATATACAAGGCCACAAACTC 57.699 33.333 5.01 0.00 0.00 3.01
4038 5280 8.410673 TTTTTATATACAAGGCCACAAACTCA 57.589 30.769 5.01 0.00 0.00 3.41
4039 5281 8.410673 TTTTATATACAAGGCCACAAACTCAA 57.589 30.769 5.01 0.00 0.00 3.02
4040 5282 8.410673 TTTATATACAAGGCCACAAACTCAAA 57.589 30.769 5.01 0.00 0.00 2.69
4041 5283 8.588290 TTATATACAAGGCCACAAACTCAAAT 57.412 30.769 5.01 0.00 0.00 2.32
4042 5284 5.806654 ATACAAGGCCACAAACTCAAATT 57.193 34.783 5.01 0.00 0.00 1.82
4043 5285 6.909550 ATACAAGGCCACAAACTCAAATTA 57.090 33.333 5.01 0.00 0.00 1.40
4044 5286 4.944048 ACAAGGCCACAAACTCAAATTAC 58.056 39.130 5.01 0.00 0.00 1.89
4045 5287 4.404073 ACAAGGCCACAAACTCAAATTACA 59.596 37.500 5.01 0.00 0.00 2.41
4046 5288 5.070313 ACAAGGCCACAAACTCAAATTACAT 59.930 36.000 5.01 0.00 0.00 2.29
4047 5289 5.138125 AGGCCACAAACTCAAATTACATG 57.862 39.130 5.01 0.00 0.00 3.21
4048 5290 4.588528 AGGCCACAAACTCAAATTACATGT 59.411 37.500 5.01 2.69 0.00 3.21
4049 5291 5.772672 AGGCCACAAACTCAAATTACATGTA 59.227 36.000 5.01 0.08 0.00 2.29
4050 5292 5.861787 GGCCACAAACTCAAATTACATGTAC 59.138 40.000 4.68 0.00 0.00 2.90
4051 5293 5.861787 GCCACAAACTCAAATTACATGTACC 59.138 40.000 4.68 0.00 0.00 3.34
4052 5294 6.515862 GCCACAAACTCAAATTACATGTACCA 60.516 38.462 4.68 0.00 0.00 3.25
4053 5295 7.429633 CCACAAACTCAAATTACATGTACCAA 58.570 34.615 4.68 0.00 0.00 3.67
4054 5296 8.087750 CCACAAACTCAAATTACATGTACCAAT 58.912 33.333 4.68 0.00 0.00 3.16
4055 5297 8.914654 CACAAACTCAAATTACATGTACCAATG 58.085 33.333 4.68 3.20 0.00 2.82
4056 5298 8.637986 ACAAACTCAAATTACATGTACCAATGT 58.362 29.630 4.68 4.44 43.21 2.71
4069 5311 9.377312 ACATGTACCAATGTAAAATTTAATGCC 57.623 29.630 0.00 0.00 39.01 4.40
4070 5312 9.598517 CATGTACCAATGTAAAATTTAATGCCT 57.401 29.630 0.00 0.00 0.00 4.75
4071 5313 8.994429 TGTACCAATGTAAAATTTAATGCCTG 57.006 30.769 0.00 0.00 0.00 4.85
4072 5314 6.983474 ACCAATGTAAAATTTAATGCCTGC 57.017 33.333 0.00 0.00 0.00 4.85
4073 5315 6.710278 ACCAATGTAAAATTTAATGCCTGCT 58.290 32.000 0.00 0.00 0.00 4.24
4074 5316 7.167535 ACCAATGTAAAATTTAATGCCTGCTT 58.832 30.769 0.00 0.00 0.00 3.91
4075 5317 7.665145 ACCAATGTAAAATTTAATGCCTGCTTT 59.335 29.630 0.00 0.00 0.00 3.51
4076 5318 7.964011 CCAATGTAAAATTTAATGCCTGCTTTG 59.036 33.333 0.00 0.00 0.00 2.77
4077 5319 6.479095 TGTAAAATTTAATGCCTGCTTTGC 57.521 33.333 0.00 0.00 0.00 3.68
4078 5320 5.994054 TGTAAAATTTAATGCCTGCTTTGCA 59.006 32.000 0.00 0.00 43.97 4.08
4079 5321 6.484643 TGTAAAATTTAATGCCTGCTTTGCAA 59.515 30.769 0.00 0.00 42.92 4.08
4080 5322 5.616488 AAATTTAATGCCTGCTTTGCAAG 57.384 34.783 0.00 0.00 42.92 4.01
4081 5323 3.749665 TTTAATGCCTGCTTTGCAAGT 57.250 38.095 0.00 0.00 42.92 3.16
4082 5324 3.302365 TTAATGCCTGCTTTGCAAGTC 57.698 42.857 0.00 0.00 42.92 3.01
4083 5325 1.042229 AATGCCTGCTTTGCAAGTCA 58.958 45.000 0.00 0.74 42.92 3.41
4084 5326 0.601558 ATGCCTGCTTTGCAAGTCAG 59.398 50.000 17.90 17.90 42.92 3.51
4085 5327 1.372623 GCCTGCTTTGCAAGTCAGC 60.373 57.895 18.89 16.52 38.41 4.26
4086 5328 1.803366 GCCTGCTTTGCAAGTCAGCT 61.803 55.000 19.45 0.00 38.41 4.24
4087 5329 0.672342 CCTGCTTTGCAAGTCAGCTT 59.328 50.000 19.45 0.00 38.41 3.74
4088 5330 1.068127 CCTGCTTTGCAAGTCAGCTTT 59.932 47.619 19.45 0.00 38.41 3.51
4089 5331 2.482490 CCTGCTTTGCAAGTCAGCTTTT 60.482 45.455 19.45 0.00 38.41 2.27
4090 5332 2.793232 CTGCTTTGCAAGTCAGCTTTTC 59.207 45.455 19.45 0.00 38.41 2.29
4091 5333 2.428171 TGCTTTGCAAGTCAGCTTTTCT 59.572 40.909 19.45 0.00 34.76 2.52
4092 5334 3.119029 TGCTTTGCAAGTCAGCTTTTCTT 60.119 39.130 19.45 0.00 34.76 2.52
4093 5335 3.867493 GCTTTGCAAGTCAGCTTTTCTTT 59.133 39.130 13.22 0.00 31.49 2.52
4094 5336 4.330894 GCTTTGCAAGTCAGCTTTTCTTTT 59.669 37.500 13.22 0.00 31.49 2.27
4095 5337 5.163824 GCTTTGCAAGTCAGCTTTTCTTTTT 60.164 36.000 13.22 0.00 31.49 1.94
4096 5338 5.783100 TTGCAAGTCAGCTTTTCTTTTTG 57.217 34.783 0.00 0.00 31.49 2.44
4097 5339 4.819769 TGCAAGTCAGCTTTTCTTTTTGT 58.180 34.783 0.00 0.00 31.49 2.83
4098 5340 5.237048 TGCAAGTCAGCTTTTCTTTTTGTT 58.763 33.333 0.00 0.00 31.49 2.83
4099 5341 5.700373 TGCAAGTCAGCTTTTCTTTTTGTTT 59.300 32.000 0.00 0.00 31.49 2.83
4100 5342 6.870965 TGCAAGTCAGCTTTTCTTTTTGTTTA 59.129 30.769 0.00 0.00 31.49 2.01
4101 5343 7.148656 TGCAAGTCAGCTTTTCTTTTTGTTTAC 60.149 33.333 0.00 0.00 31.49 2.01
4102 5344 7.674008 GCAAGTCAGCTTTTCTTTTTGTTTACC 60.674 37.037 0.00 0.00 31.49 2.85
4103 5345 6.033966 AGTCAGCTTTTCTTTTTGTTTACCG 58.966 36.000 0.00 0.00 0.00 4.02
4104 5346 5.231357 GTCAGCTTTTCTTTTTGTTTACCGG 59.769 40.000 0.00 0.00 0.00 5.28
4105 5347 4.506288 CAGCTTTTCTTTTTGTTTACCGGG 59.494 41.667 6.32 0.00 0.00 5.73
4106 5348 4.403113 AGCTTTTCTTTTTGTTTACCGGGA 59.597 37.500 6.32 0.00 0.00 5.14
4107 5349 5.069914 AGCTTTTCTTTTTGTTTACCGGGAT 59.930 36.000 6.32 0.00 0.00 3.85
4108 5350 5.404366 GCTTTTCTTTTTGTTTACCGGGATC 59.596 40.000 6.32 0.00 0.00 3.36
4109 5351 4.752661 TTCTTTTTGTTTACCGGGATCG 57.247 40.909 6.32 0.00 0.00 3.69
4110 5352 3.742385 TCTTTTTGTTTACCGGGATCGT 58.258 40.909 6.32 0.00 33.95 3.73
4111 5353 4.892433 TCTTTTTGTTTACCGGGATCGTA 58.108 39.130 6.32 0.00 33.95 3.43
4112 5354 5.490159 TCTTTTTGTTTACCGGGATCGTAT 58.510 37.500 6.32 0.00 33.95 3.06
4113 5355 5.352016 TCTTTTTGTTTACCGGGATCGTATG 59.648 40.000 6.32 0.00 33.95 2.39
4114 5356 2.894763 TGTTTACCGGGATCGTATGG 57.105 50.000 6.32 0.00 33.95 2.74
4115 5357 1.413445 TGTTTACCGGGATCGTATGGG 59.587 52.381 6.32 0.00 33.95 4.00
4116 5358 1.413812 GTTTACCGGGATCGTATGGGT 59.586 52.381 6.32 0.00 34.81 4.51
4117 5359 1.792115 TTACCGGGATCGTATGGGTT 58.208 50.000 6.32 0.00 32.29 4.11
4118 5360 1.792115 TACCGGGATCGTATGGGTTT 58.208 50.000 6.32 0.00 32.29 3.27
4119 5361 0.466963 ACCGGGATCGTATGGGTTTC 59.533 55.000 6.32 0.00 33.95 2.78
4120 5362 0.466543 CCGGGATCGTATGGGTTTCA 59.533 55.000 0.00 0.00 33.95 2.69
4121 5363 1.134340 CCGGGATCGTATGGGTTTCAA 60.134 52.381 0.00 0.00 33.95 2.69
4122 5364 1.937899 CGGGATCGTATGGGTTTCAAC 59.062 52.381 0.00 0.00 0.00 3.18
4123 5365 2.419574 CGGGATCGTATGGGTTTCAACT 60.420 50.000 0.00 0.00 0.00 3.16
4124 5366 3.203716 GGGATCGTATGGGTTTCAACTC 58.796 50.000 0.00 0.00 0.00 3.01
4125 5367 3.118371 GGGATCGTATGGGTTTCAACTCT 60.118 47.826 0.00 0.00 0.00 3.24
4126 5368 4.100498 GGGATCGTATGGGTTTCAACTCTA 59.900 45.833 0.00 0.00 0.00 2.43
4127 5369 5.290386 GGATCGTATGGGTTTCAACTCTAG 58.710 45.833 0.00 0.00 0.00 2.43
4128 5370 4.119442 TCGTATGGGTTTCAACTCTAGC 57.881 45.455 0.00 0.00 0.00 3.42
4129 5371 3.767673 TCGTATGGGTTTCAACTCTAGCT 59.232 43.478 0.00 0.00 0.00 3.32
4134 5376 7.924412 CGTATGGGTTTCAACTCTAGCTTATAA 59.076 37.037 0.00 0.00 0.00 0.98
4174 5416 7.606073 ACTCAAAAGGCTTTGTTGTTGTATTTT 59.394 29.630 14.19 0.00 42.26 1.82
4191 5433 9.006215 GTTGTATTTTATAGTTAAAGCGCCAAG 57.994 33.333 2.29 0.00 0.00 3.61
4204 5446 0.676466 CGCCAAGCTGGTATGTGGAA 60.676 55.000 3.98 0.00 40.46 3.53
4241 5483 5.419760 AGCGGAGTTGTTTTTCTTAGTTC 57.580 39.130 0.00 0.00 0.00 3.01
4248 5490 7.274904 GGAGTTGTTTTTCTTAGTTCACCAAAC 59.725 37.037 0.00 0.00 38.21 2.93
4251 5493 5.106078 TGTTTTTCTTAGTTCACCAAACGCT 60.106 36.000 0.00 0.00 43.02 5.07
4273 5515 6.507456 CGCTGCTTCAAATTTCAATTCATAGC 60.507 38.462 0.00 0.00 0.00 2.97
4274 5516 6.238022 GCTGCTTCAAATTTCAATTCATAGCC 60.238 38.462 0.00 0.00 30.37 3.93
4279 5521 6.938507 TCAAATTTCAATTCATAGCCAGCTT 58.061 32.000 0.00 0.00 0.00 3.74
4311 5553 7.782644 TCAAGAAACAAAAAGGAGAATTCCCTA 59.217 33.333 13.82 0.00 45.24 3.53
4312 5554 7.767250 AGAAACAAAAAGGAGAATTCCCTAG 57.233 36.000 13.82 8.53 45.24 3.02
4362 5604 8.574309 AGGAGGGAAGAAAACAGAAGATATAT 57.426 34.615 0.00 0.00 0.00 0.86
4366 5608 9.981460 AGGGAAGAAAACAGAAGATATATTGTT 57.019 29.630 0.00 0.00 35.43 2.83
4398 5640 5.201243 ACTCCTTTTACAAATAGGGATGGC 58.799 41.667 0.00 0.00 0.00 4.40
4401 5643 4.036380 CCTTTTACAAATAGGGATGGCGTC 59.964 45.833 0.00 0.00 0.00 5.19
4404 5646 1.837439 ACAAATAGGGATGGCGTCTGA 59.163 47.619 6.67 0.00 0.00 3.27
4405 5647 2.439507 ACAAATAGGGATGGCGTCTGAT 59.560 45.455 6.67 0.00 0.00 2.90
4406 5648 3.070018 CAAATAGGGATGGCGTCTGATC 58.930 50.000 6.67 0.00 0.00 2.92
4407 5649 1.270907 ATAGGGATGGCGTCTGATCC 58.729 55.000 6.67 0.00 37.94 3.36
4427 6379 9.866798 CTGATCCGATCTTGAATTCTTGATATA 57.133 33.333 9.78 1.06 0.00 0.86
4459 6411 3.607987 GTGAATCTCGACGCGCGG 61.608 66.667 35.22 17.77 41.33 6.46
4488 6440 7.583040 GCATCGATTTAGACGTAAGAAAAATCC 59.417 37.037 0.00 0.00 38.62 3.01
4490 6442 5.894807 CGATTTAGACGTAAGAAAAATCCGC 59.105 40.000 0.00 0.00 38.62 5.54
4540 6494 1.656652 CGGAAGGTACCATTGCTGAG 58.343 55.000 15.94 0.00 0.00 3.35
4542 6496 2.633488 GGAAGGTACCATTGCTGAGAC 58.367 52.381 15.94 0.00 0.00 3.36
4550 6504 5.126061 GGTACCATTGCTGAGACATTCAAAT 59.874 40.000 7.15 0.00 34.81 2.32
4597 6551 0.887933 ATTTGGCGCCAACTTACAGG 59.112 50.000 40.36 0.00 35.46 4.00
4611 6565 3.829601 ACTTACAGGAGAGGACAAGAGTG 59.170 47.826 0.00 0.00 0.00 3.51
4625 6579 2.926200 CAAGAGTGCAGTGGAATAGACG 59.074 50.000 0.00 0.00 0.00 4.18
4632 6586 3.119291 GCAGTGGAATAGACGAGACATG 58.881 50.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
285 305 5.385396 CGAAGGTGGTAATACGAAATGTC 57.615 43.478 0.00 0.00 0.00 3.06
318 338 1.024046 TTCACACGCATGATTCCCGG 61.024 55.000 0.00 0.00 0.00 5.73
320 340 2.423185 TGATTTCACACGCATGATTCCC 59.577 45.455 0.00 0.00 0.00 3.97
553 574 3.086600 CCTCCTCTGGGGTCTGGC 61.087 72.222 0.00 0.00 36.25 4.85
554 575 1.992277 CACCTCCTCTGGGGTCTGG 60.992 68.421 0.00 0.00 32.95 3.86
555 576 0.041238 TACACCTCCTCTGGGGTCTG 59.959 60.000 0.00 0.00 40.16 3.51
556 577 0.336737 CTACACCTCCTCTGGGGTCT 59.663 60.000 0.00 0.00 40.16 3.85
563 584 4.598373 ACCGTATCTATCTACACCTCCTCT 59.402 45.833 0.00 0.00 0.00 3.69
622 643 2.633967 GGGCATCTCATCTCATCTCACT 59.366 50.000 0.00 0.00 0.00 3.41
623 644 2.633967 AGGGCATCTCATCTCATCTCAC 59.366 50.000 0.00 0.00 0.00 3.51
624 645 2.973710 AGGGCATCTCATCTCATCTCA 58.026 47.619 0.00 0.00 0.00 3.27
625 646 4.040706 AGAAAGGGCATCTCATCTCATCTC 59.959 45.833 0.00 0.00 0.00 2.75
668 691 8.401709 ACGCTACACTACTTACTAATAAAGGAC 58.598 37.037 0.00 0.00 0.00 3.85
745 768 4.918810 AAGGGGATTCAATTATTCGCAC 57.081 40.909 0.00 0.00 0.00 5.34
748 771 6.507023 CCTCAAAAGGGGATTCAATTATTCG 58.493 40.000 0.00 0.00 39.21 3.34
773 796 0.955428 GCACAAGGACTCGGCATCAA 60.955 55.000 0.00 0.00 0.00 2.57
774 797 1.375908 GCACAAGGACTCGGCATCA 60.376 57.895 0.00 0.00 0.00 3.07
812 835 2.756760 ACCAATGAGCAATGGATGACAC 59.243 45.455 11.35 0.00 39.12 3.67
829 852 0.397564 TGCTGCTGATCACAGACCAA 59.602 50.000 21.90 7.45 46.03 3.67
835 858 2.038837 GCTGCTGCTGCTGATCACA 61.039 57.895 23.39 0.00 40.01 3.58
924 950 1.471287 CCTTGCCGCTTTAAGTAACCC 59.529 52.381 0.00 0.00 0.00 4.11
1055 1102 3.087253 TGAGCCCCCATACCGGTG 61.087 66.667 19.93 0.00 0.00 4.94
1072 1119 2.281761 CAGAAGGGCAGCAACCGT 60.282 61.111 0.00 0.00 0.00 4.83
1074 1121 2.282745 AGCAGAAGGGCAGCAACC 60.283 61.111 0.00 0.00 35.83 3.77
1077 1124 3.573229 ACCAGCAGAAGGGCAGCA 61.573 61.111 0.00 0.00 35.83 4.41
1086 1133 3.896356 GAGCAGCAGCACCAGCAGA 62.896 63.158 3.17 0.00 45.49 4.26
1170 1217 2.442272 GCGCCAGAGAGGAGGGTA 60.442 66.667 0.00 0.00 41.22 3.69
1182 1229 4.082523 CCCTTCTCCTTCGCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
1215 1262 9.364653 GGAAGGAAGAAACCTAGATATACAGTA 57.635 37.037 0.00 0.00 39.62 2.74
1216 1263 7.844779 TGGAAGGAAGAAACCTAGATATACAGT 59.155 37.037 0.00 0.00 39.62 3.55
1259 1307 4.610945 CACACTGAAACCAGACCAAATTC 58.389 43.478 0.00 0.00 35.67 2.17
1471 1528 7.274250 GTCAAAGCAGATTTTGGTAATGACATC 59.726 37.037 14.80 0.00 44.84 3.06
1474 1531 6.446318 TGTCAAAGCAGATTTTGGTAATGAC 58.554 36.000 13.66 13.66 45.23 3.06
1479 1536 6.003326 TCTCATGTCAAAGCAGATTTTGGTA 58.997 36.000 0.00 0.00 38.33 3.25
1578 1636 4.041075 TCCACTTGCTAATTACAGACCACA 59.959 41.667 0.00 0.00 0.00 4.17
1586 1644 4.095036 GCCTTGAGTCCACTTGCTAATTAC 59.905 45.833 0.00 0.00 0.00 1.89
1842 1907 5.319043 TGGAAAGAGGTGGAACAAATAGT 57.681 39.130 0.00 0.00 44.16 2.12
1855 1920 1.660560 CGCAAGGGCATGGAAAGAGG 61.661 60.000 0.00 0.00 41.24 3.69
1867 1932 1.467374 CGACCAAAATTAGCGCAAGGG 60.467 52.381 11.47 3.28 38.28 3.95
1989 2062 5.684704 ACATCAGACAGAGGTTCAGAAAAA 58.315 37.500 0.00 0.00 38.24 1.94
2020 2096 7.439056 AGAACATTACTTTGAGCAACCAAAATG 59.561 33.333 0.00 0.00 35.83 2.32
2021 2097 7.439056 CAGAACATTACTTTGAGCAACCAAAAT 59.561 33.333 0.00 0.00 35.83 1.82
2140 2219 5.012239 AGTATGATGACCTGTGTTGCATTT 58.988 37.500 0.00 0.00 0.00 2.32
2185 2264 7.955918 AGTTCTTTTCATTTCCACTGCTAATT 58.044 30.769 0.00 0.00 0.00 1.40
2186 2265 7.231317 TGAGTTCTTTTCATTTCCACTGCTAAT 59.769 33.333 0.00 0.00 0.00 1.73
2206 2354 7.009907 GCCTGAAATGCATAGAAAAATGAGTTC 59.990 37.037 0.00 0.00 0.00 3.01
2221 2369 2.224992 TGTAAAGAGGGCCTGAAATGCA 60.225 45.455 12.95 0.82 0.00 3.96
2222 2370 2.424956 CTGTAAAGAGGGCCTGAAATGC 59.575 50.000 12.95 0.00 0.00 3.56
2332 2480 3.243359 TCAAGGAAAAACCCAGCATCT 57.757 42.857 0.00 0.00 40.05 2.90
2387 2567 5.009210 GTGGTAATTTAGTTCAGGTGCAACA 59.991 40.000 3.64 0.00 39.98 3.33
2467 2652 1.406614 CCTGGAGGTGAATGACTCTGC 60.407 57.143 0.00 0.00 34.22 4.26
2516 2701 7.802251 GCTTGAATATAAATGAGACATGTCTGC 59.198 37.037 32.50 22.02 40.61 4.26
2528 2713 7.482654 TGACGAGAAGGCTTGAATATAAATG 57.517 36.000 3.46 0.00 0.00 2.32
2548 2734 5.852738 ACAACAAGAATCAGAAGATGACG 57.147 39.130 0.00 0.00 41.91 4.35
2642 2865 6.595326 CCAAATAGCATCAATCGCTAGGATAA 59.405 38.462 0.00 0.00 44.74 1.75
2644 2869 4.940046 CCAAATAGCATCAATCGCTAGGAT 59.060 41.667 0.00 0.00 44.74 3.24
2648 2873 3.250762 GTGCCAAATAGCATCAATCGCTA 59.749 43.478 0.00 0.00 46.24 4.26
2649 2874 2.033801 GTGCCAAATAGCATCAATCGCT 59.966 45.455 0.00 0.00 46.24 4.93
2651 2876 3.696281 TGTGCCAAATAGCATCAATCG 57.304 42.857 0.00 0.00 46.24 3.34
2668 2893 5.579511 GGAAAGATCTCAATGGCATTTTGTG 59.420 40.000 10.65 3.29 0.00 3.33
2671 2896 4.463891 ACGGAAAGATCTCAATGGCATTTT 59.536 37.500 10.65 0.00 0.00 1.82
2788 3017 6.543100 CAGGCCAATGCAAACCAAATTATAAT 59.457 34.615 5.01 0.00 40.13 1.28
2789 3018 5.879223 CAGGCCAATGCAAACCAAATTATAA 59.121 36.000 5.01 0.00 40.13 0.98
2799 3028 1.273048 TGATGACAGGCCAATGCAAAC 59.727 47.619 5.01 0.00 40.13 2.93
2860 3101 1.001633 TCTGCCGGGAAGAAACACTAC 59.998 52.381 0.91 0.00 0.00 2.73
2887 3128 2.825836 GGGGTGCGGATGCTCTTG 60.826 66.667 0.00 0.00 43.34 3.02
2977 3221 2.037902 TGAGAATTCTAACACGGGCACA 59.962 45.455 8.25 0.00 0.00 4.57
2978 3222 2.673368 CTGAGAATTCTAACACGGGCAC 59.327 50.000 8.25 0.00 0.00 5.01
2983 3228 5.692204 ACAAGACACTGAGAATTCTAACACG 59.308 40.000 8.25 0.00 0.00 4.49
2999 3244 3.181516 GCGAAGAATCATGGACAAGACAC 60.182 47.826 0.00 0.00 0.00 3.67
3191 3444 5.177725 ACAATTTAGTGTTTCACGAACCC 57.822 39.130 0.00 0.00 39.64 4.11
3192 3445 6.031471 ACAACAATTTAGTGTTTCACGAACC 58.969 36.000 0.00 0.00 39.73 3.62
3237 3493 7.405292 TCAAGTCATTGACCATCTTATTCCTT 58.595 34.615 13.14 0.00 40.54 3.36
3392 3648 5.512788 CGCAATGTGATTTGGTAGTCATTTC 59.487 40.000 0.00 0.00 0.00 2.17
3419 3679 2.417243 GGTGCACCAAAGATAACATGGC 60.417 50.000 31.23 0.00 37.77 4.40
3614 3899 5.437946 ACTTAGTAGATCTCGACATGGTCA 58.562 41.667 0.00 0.00 32.09 4.02
3619 3904 8.522542 AACCTTTACTTAGTAGATCTCGACAT 57.477 34.615 0.00 0.00 0.00 3.06
3703 4016 9.775854 AGTTCTAACTTGAATATCCTGATGATG 57.224 33.333 0.00 0.00 35.21 3.07
3722 4035 5.510861 GCCAAGTCTACACCAGAAGTTCTAA 60.511 44.000 4.74 0.00 34.17 2.10
3752 4994 5.049198 CAGCAGCAAAACTATCTGAAACAGA 60.049 40.000 3.95 3.95 44.99 3.41
3800 5042 7.930217 TGCAGACCTTAATCATTAATAACAGC 58.070 34.615 0.00 0.00 0.00 4.40
3811 5053 4.350368 TGTCACTTGCAGACCTTAATCA 57.650 40.909 2.46 0.00 35.15 2.57
3827 5069 1.514678 TTCACTGGGCGCATTGTCAC 61.515 55.000 18.52 0.00 0.00 3.67
3837 5079 2.070783 CAATGCACATTTTCACTGGGC 58.929 47.619 0.00 0.00 43.46 5.36
3842 5084 6.643770 AGTTCTCATTCAATGCACATTTTCAC 59.356 34.615 0.00 0.00 0.00 3.18
3852 5094 8.078596 ACTTCAGTTTTAGTTCTCATTCAATGC 58.921 33.333 0.00 0.00 0.00 3.56
3885 5127 2.742053 TGTCATCTGGCGCTTTAAACTC 59.258 45.455 7.64 0.00 0.00 3.01
3890 5132 0.392461 GGGTGTCATCTGGCGCTTTA 60.392 55.000 7.64 0.00 0.00 1.85
3891 5133 1.675641 GGGTGTCATCTGGCGCTTT 60.676 57.895 7.64 0.00 0.00 3.51
3900 5142 1.577328 CTGGCAACGTGGGTGTCATC 61.577 60.000 0.00 0.00 42.51 2.92
3905 5147 2.551912 GGTTCTGGCAACGTGGGTG 61.552 63.158 0.00 0.00 42.51 4.61
3906 5148 2.203294 GGTTCTGGCAACGTGGGT 60.203 61.111 0.00 0.00 42.51 4.51
3914 5156 2.885135 ATCAAGTCATGGTTCTGGCA 57.115 45.000 0.00 0.00 0.00 4.92
3915 5157 3.426695 CGAAATCAAGTCATGGTTCTGGC 60.427 47.826 0.00 0.00 28.50 4.85
3917 5159 4.931601 TCTCGAAATCAAGTCATGGTTCTG 59.068 41.667 0.00 0.00 28.50 3.02
3918 5160 5.152623 TCTCGAAATCAAGTCATGGTTCT 57.847 39.130 0.00 0.00 28.50 3.01
3919 5161 5.276584 CGATCTCGAAATCAAGTCATGGTTC 60.277 44.000 0.00 0.00 43.02 3.62
3921 5163 4.115516 CGATCTCGAAATCAAGTCATGGT 58.884 43.478 0.00 0.00 43.02 3.55
3932 5174 5.018539 TGAAACCCATACGATCTCGAAAT 57.981 39.130 6.60 0.00 43.02 2.17
3943 5185 6.651225 GGATATGCTAGAGTTGAAACCCATAC 59.349 42.308 0.00 0.00 0.00 2.39
3966 5208 3.924114 TGAGTCTCAAACAAGTTGGGA 57.076 42.857 7.96 1.14 44.87 4.37
3967 5209 4.202050 CCTTTGAGTCTCAAACAAGTTGGG 60.202 45.833 21.59 15.80 41.02 4.12
3968 5210 4.734695 GCCTTTGAGTCTCAAACAAGTTGG 60.735 45.833 21.59 19.68 41.02 3.77
3969 5211 4.096984 AGCCTTTGAGTCTCAAACAAGTTG 59.903 41.667 21.59 12.05 41.02 3.16
3970 5212 4.273318 AGCCTTTGAGTCTCAAACAAGTT 58.727 39.130 21.59 10.27 41.02 2.66
3971 5213 3.891049 AGCCTTTGAGTCTCAAACAAGT 58.109 40.909 21.59 6.45 41.02 3.16
3972 5214 4.907879 AAGCCTTTGAGTCTCAAACAAG 57.092 40.909 21.59 13.37 41.02 3.16
3973 5215 4.462483 ACAAAGCCTTTGAGTCTCAAACAA 59.538 37.500 23.32 4.78 41.02 2.83
3974 5216 4.016444 ACAAAGCCTTTGAGTCTCAAACA 58.984 39.130 23.32 5.47 41.02 2.83
3975 5217 4.639135 ACAAAGCCTTTGAGTCTCAAAC 57.361 40.909 23.32 14.08 41.02 2.93
3976 5218 4.677779 GCAACAAAGCCTTTGAGTCTCAAA 60.678 41.667 23.32 23.38 43.37 2.69
3977 5219 3.181487 GCAACAAAGCCTTTGAGTCTCAA 60.181 43.478 23.32 11.36 43.26 3.02
3978 5220 2.358898 GCAACAAAGCCTTTGAGTCTCA 59.641 45.455 23.32 0.00 43.26 3.27
3979 5221 2.620585 AGCAACAAAGCCTTTGAGTCTC 59.379 45.455 23.32 7.64 43.26 3.36
3980 5222 2.360165 CAGCAACAAAGCCTTTGAGTCT 59.640 45.455 23.32 12.65 43.26 3.24
3981 5223 2.099756 ACAGCAACAAAGCCTTTGAGTC 59.900 45.455 23.32 10.78 43.26 3.36
3982 5224 2.102578 ACAGCAACAAAGCCTTTGAGT 58.897 42.857 23.32 8.10 43.26 3.41
3983 5225 2.877043 ACAGCAACAAAGCCTTTGAG 57.123 45.000 23.32 15.26 43.26 3.02
3984 5226 3.287222 AGTACAGCAACAAAGCCTTTGA 58.713 40.909 23.32 0.00 43.26 2.69
3985 5227 3.550842 GGAGTACAGCAACAAAGCCTTTG 60.551 47.826 15.47 15.47 45.95 2.77
3986 5228 2.623416 GGAGTACAGCAACAAAGCCTTT 59.377 45.455 0.00 0.00 34.23 3.11
3987 5229 2.230660 GGAGTACAGCAACAAAGCCTT 58.769 47.619 0.00 0.00 34.23 4.35
3988 5230 1.545651 GGGAGTACAGCAACAAAGCCT 60.546 52.381 0.00 0.00 34.23 4.58
3989 5231 0.881796 GGGAGTACAGCAACAAAGCC 59.118 55.000 0.00 0.00 34.23 4.35
3990 5232 1.807142 GAGGGAGTACAGCAACAAAGC 59.193 52.381 0.00 0.00 0.00 3.51
3991 5233 2.224523 TGGAGGGAGTACAGCAACAAAG 60.225 50.000 0.00 0.00 0.00 2.77
3992 5234 1.771854 TGGAGGGAGTACAGCAACAAA 59.228 47.619 0.00 0.00 0.00 2.83
3993 5235 1.429930 TGGAGGGAGTACAGCAACAA 58.570 50.000 0.00 0.00 0.00 2.83
3994 5236 1.656587 ATGGAGGGAGTACAGCAACA 58.343 50.000 0.00 0.00 0.00 3.33
3995 5237 2.789409 AATGGAGGGAGTACAGCAAC 57.211 50.000 0.00 0.00 0.00 4.17
3996 5238 3.806949 AAAATGGAGGGAGTACAGCAA 57.193 42.857 0.00 0.00 0.00 3.91
3997 5239 3.806949 AAAAATGGAGGGAGTACAGCA 57.193 42.857 0.00 0.00 0.00 4.41
3998 5240 8.154856 TGTATATAAAAATGGAGGGAGTACAGC 58.845 37.037 0.00 0.00 0.00 4.40
4001 5243 9.503399 CCTTGTATATAAAAATGGAGGGAGTAC 57.497 37.037 0.00 0.00 0.00 2.73
4002 5244 8.161425 GCCTTGTATATAAAAATGGAGGGAGTA 58.839 37.037 0.00 0.00 0.00 2.59
4003 5245 7.004691 GCCTTGTATATAAAAATGGAGGGAGT 58.995 38.462 0.00 0.00 0.00 3.85
4004 5246 6.434340 GGCCTTGTATATAAAAATGGAGGGAG 59.566 42.308 0.00 0.00 0.00 4.30
4005 5247 6.126038 TGGCCTTGTATATAAAAATGGAGGGA 60.126 38.462 3.32 0.00 0.00 4.20
4006 5248 6.015434 GTGGCCTTGTATATAAAAATGGAGGG 60.015 42.308 3.32 0.00 0.00 4.30
4007 5249 6.549364 TGTGGCCTTGTATATAAAAATGGAGG 59.451 38.462 3.32 0.00 0.00 4.30
4008 5250 7.581213 TGTGGCCTTGTATATAAAAATGGAG 57.419 36.000 3.32 0.00 0.00 3.86
4009 5251 7.962995 TTGTGGCCTTGTATATAAAAATGGA 57.037 32.000 3.32 0.00 0.00 3.41
4010 5252 8.257306 AGTTTGTGGCCTTGTATATAAAAATGG 58.743 33.333 3.32 0.00 0.00 3.16
4011 5253 9.301153 GAGTTTGTGGCCTTGTATATAAAAATG 57.699 33.333 3.32 0.00 0.00 2.32
4012 5254 9.030452 TGAGTTTGTGGCCTTGTATATAAAAAT 57.970 29.630 3.32 0.00 0.00 1.82
4013 5255 8.410673 TGAGTTTGTGGCCTTGTATATAAAAA 57.589 30.769 3.32 0.00 0.00 1.94
4014 5256 8.410673 TTGAGTTTGTGGCCTTGTATATAAAA 57.589 30.769 3.32 0.00 0.00 1.52
4015 5257 8.410673 TTTGAGTTTGTGGCCTTGTATATAAA 57.589 30.769 3.32 0.00 0.00 1.40
4016 5258 8.588290 ATTTGAGTTTGTGGCCTTGTATATAA 57.412 30.769 3.32 0.00 0.00 0.98
4017 5259 8.588290 AATTTGAGTTTGTGGCCTTGTATATA 57.412 30.769 3.32 0.00 0.00 0.86
4018 5260 7.480760 AATTTGAGTTTGTGGCCTTGTATAT 57.519 32.000 3.32 0.00 0.00 0.86
4019 5261 6.909550 AATTTGAGTTTGTGGCCTTGTATA 57.090 33.333 3.32 0.00 0.00 1.47
4020 5262 5.806654 AATTTGAGTTTGTGGCCTTGTAT 57.193 34.783 3.32 0.00 0.00 2.29
4021 5263 5.594725 TGTAATTTGAGTTTGTGGCCTTGTA 59.405 36.000 3.32 0.00 0.00 2.41
4022 5264 4.404073 TGTAATTTGAGTTTGTGGCCTTGT 59.596 37.500 3.32 0.00 0.00 3.16
4023 5265 4.942852 TGTAATTTGAGTTTGTGGCCTTG 58.057 39.130 3.32 0.00 0.00 3.61
4024 5266 5.070313 ACATGTAATTTGAGTTTGTGGCCTT 59.930 36.000 3.32 0.00 0.00 4.35
4025 5267 4.588528 ACATGTAATTTGAGTTTGTGGCCT 59.411 37.500 3.32 0.00 0.00 5.19
4026 5268 4.881920 ACATGTAATTTGAGTTTGTGGCC 58.118 39.130 0.00 0.00 0.00 5.36
4027 5269 5.861787 GGTACATGTAATTTGAGTTTGTGGC 59.138 40.000 7.25 0.00 0.00 5.01
4028 5270 6.976088 TGGTACATGTAATTTGAGTTTGTGG 58.024 36.000 7.25 0.00 0.00 4.17
4029 5271 8.914654 CATTGGTACATGTAATTTGAGTTTGTG 58.085 33.333 7.25 0.00 39.30 3.33
4030 5272 8.637986 ACATTGGTACATGTAATTTGAGTTTGT 58.362 29.630 7.25 0.24 39.30 2.83
4043 5285 9.377312 GGCATTAAATTTTACATTGGTACATGT 57.623 29.630 2.69 2.69 39.30 3.21
4044 5286 9.598517 AGGCATTAAATTTTACATTGGTACATG 57.401 29.630 0.00 0.00 39.30 3.21
4045 5287 9.598517 CAGGCATTAAATTTTACATTGGTACAT 57.401 29.630 0.00 0.00 39.30 2.29
4046 5288 7.547370 GCAGGCATTAAATTTTACATTGGTACA 59.453 33.333 0.00 0.00 0.00 2.90
4047 5289 7.763985 AGCAGGCATTAAATTTTACATTGGTAC 59.236 33.333 0.00 0.00 0.00 3.34
4048 5290 7.846066 AGCAGGCATTAAATTTTACATTGGTA 58.154 30.769 0.00 0.00 0.00 3.25
4049 5291 6.710278 AGCAGGCATTAAATTTTACATTGGT 58.290 32.000 0.00 0.00 0.00 3.67
4050 5292 7.614124 AAGCAGGCATTAAATTTTACATTGG 57.386 32.000 0.00 0.00 0.00 3.16
4051 5293 7.482428 GCAAAGCAGGCATTAAATTTTACATTG 59.518 33.333 0.00 0.00 0.00 2.82
4052 5294 7.174599 TGCAAAGCAGGCATTAAATTTTACATT 59.825 29.630 0.00 0.00 36.11 2.71
4053 5295 6.654161 TGCAAAGCAGGCATTAAATTTTACAT 59.346 30.769 0.00 0.00 36.11 2.29
4054 5296 5.994054 TGCAAAGCAGGCATTAAATTTTACA 59.006 32.000 0.00 0.00 36.11 2.41
4055 5297 6.479095 TGCAAAGCAGGCATTAAATTTTAC 57.521 33.333 0.00 0.00 36.11 2.01
4056 5298 7.131498 CTTGCAAAGCAGGCATTAAATTTTA 57.869 32.000 0.00 0.00 41.58 1.52
4057 5299 6.004408 CTTGCAAAGCAGGCATTAAATTTT 57.996 33.333 0.00 0.00 41.58 1.82
4058 5300 5.616488 CTTGCAAAGCAGGCATTAAATTT 57.384 34.783 0.00 0.00 41.58 1.82
4073 5315 5.700373 ACAAAAAGAAAAGCTGACTTGCAAA 59.300 32.000 0.00 0.00 35.85 3.68
4074 5316 5.237048 ACAAAAAGAAAAGCTGACTTGCAA 58.763 33.333 0.00 0.00 35.85 4.08
4075 5317 4.819769 ACAAAAAGAAAAGCTGACTTGCA 58.180 34.783 0.00 0.00 35.85 4.08
4076 5318 5.784750 AACAAAAAGAAAAGCTGACTTGC 57.215 34.783 0.00 0.00 35.85 4.01
4077 5319 7.462724 CGGTAAACAAAAAGAAAAGCTGACTTG 60.463 37.037 0.00 0.00 35.85 3.16
4078 5320 6.530181 CGGTAAACAAAAAGAAAAGCTGACTT 59.470 34.615 0.00 0.00 37.90 3.01
4079 5321 6.033966 CGGTAAACAAAAAGAAAAGCTGACT 58.966 36.000 0.00 0.00 0.00 3.41
4080 5322 5.231357 CCGGTAAACAAAAAGAAAAGCTGAC 59.769 40.000 0.00 0.00 0.00 3.51
4081 5323 5.344884 CCGGTAAACAAAAAGAAAAGCTGA 58.655 37.500 0.00 0.00 0.00 4.26
4082 5324 4.506288 CCCGGTAAACAAAAAGAAAAGCTG 59.494 41.667 0.00 0.00 0.00 4.24
4083 5325 4.403113 TCCCGGTAAACAAAAAGAAAAGCT 59.597 37.500 0.00 0.00 0.00 3.74
4084 5326 4.684877 TCCCGGTAAACAAAAAGAAAAGC 58.315 39.130 0.00 0.00 0.00 3.51
4085 5327 5.627780 CGATCCCGGTAAACAAAAAGAAAAG 59.372 40.000 0.00 0.00 0.00 2.27
4086 5328 5.067544 ACGATCCCGGTAAACAAAAAGAAAA 59.932 36.000 0.00 0.00 40.78 2.29
4087 5329 4.579753 ACGATCCCGGTAAACAAAAAGAAA 59.420 37.500 0.00 0.00 40.78 2.52
4088 5330 4.136051 ACGATCCCGGTAAACAAAAAGAA 58.864 39.130 0.00 0.00 40.78 2.52
4089 5331 3.742385 ACGATCCCGGTAAACAAAAAGA 58.258 40.909 0.00 0.00 40.78 2.52
4090 5332 5.448089 CCATACGATCCCGGTAAACAAAAAG 60.448 44.000 0.00 0.00 40.78 2.27
4091 5333 4.395542 CCATACGATCCCGGTAAACAAAAA 59.604 41.667 0.00 0.00 40.78 1.94
4092 5334 3.940221 CCATACGATCCCGGTAAACAAAA 59.060 43.478 0.00 0.00 40.78 2.44
4093 5335 3.533547 CCATACGATCCCGGTAAACAAA 58.466 45.455 0.00 0.00 40.78 2.83
4094 5336 2.158928 CCCATACGATCCCGGTAAACAA 60.159 50.000 0.00 0.00 40.78 2.83
4095 5337 1.413445 CCCATACGATCCCGGTAAACA 59.587 52.381 0.00 0.00 40.78 2.83
4096 5338 1.413812 ACCCATACGATCCCGGTAAAC 59.586 52.381 0.00 0.00 40.78 2.01
4097 5339 1.792115 ACCCATACGATCCCGGTAAA 58.208 50.000 0.00 0.00 40.78 2.01
4098 5340 1.792115 AACCCATACGATCCCGGTAA 58.208 50.000 0.00 0.00 40.78 2.85
4099 5341 1.688197 GAAACCCATACGATCCCGGTA 59.312 52.381 0.00 0.00 40.78 4.02
4100 5342 0.466963 GAAACCCATACGATCCCGGT 59.533 55.000 0.00 0.00 40.78 5.28
4101 5343 0.466543 TGAAACCCATACGATCCCGG 59.533 55.000 0.00 0.00 40.78 5.73
4102 5344 1.937899 GTTGAAACCCATACGATCCCG 59.062 52.381 0.00 0.00 42.50 5.14
4103 5345 3.118371 AGAGTTGAAACCCATACGATCCC 60.118 47.826 0.00 0.00 0.00 3.85
4104 5346 4.138487 AGAGTTGAAACCCATACGATCC 57.862 45.455 0.00 0.00 0.00 3.36
4105 5347 4.745620 GCTAGAGTTGAAACCCATACGATC 59.254 45.833 0.00 0.00 0.00 3.69
4106 5348 4.406003 AGCTAGAGTTGAAACCCATACGAT 59.594 41.667 0.00 0.00 0.00 3.73
4107 5349 3.767673 AGCTAGAGTTGAAACCCATACGA 59.232 43.478 0.00 0.00 0.00 3.43
4108 5350 4.124851 AGCTAGAGTTGAAACCCATACG 57.875 45.455 0.00 0.00 0.00 3.06
4109 5351 9.043079 GTTATAAGCTAGAGTTGAAACCCATAC 57.957 37.037 0.00 0.00 0.00 2.39
4110 5352 8.764558 TGTTATAAGCTAGAGTTGAAACCCATA 58.235 33.333 0.00 0.00 0.00 2.74
4111 5353 7.630082 TGTTATAAGCTAGAGTTGAAACCCAT 58.370 34.615 0.00 0.00 0.00 4.00
4112 5354 7.011499 TGTTATAAGCTAGAGTTGAAACCCA 57.989 36.000 0.00 0.00 0.00 4.51
4113 5355 7.606839 AGTTGTTATAAGCTAGAGTTGAAACCC 59.393 37.037 0.00 0.00 0.00 4.11
4114 5356 8.549338 AGTTGTTATAAGCTAGAGTTGAAACC 57.451 34.615 0.00 0.00 0.00 3.27
4115 5357 9.813080 CAAGTTGTTATAAGCTAGAGTTGAAAC 57.187 33.333 0.00 0.00 0.00 2.78
4116 5358 9.555727 ACAAGTTGTTATAAGCTAGAGTTGAAA 57.444 29.630 1.64 0.00 0.00 2.69
4117 5359 9.555727 AACAAGTTGTTATAAGCTAGAGTTGAA 57.444 29.630 19.59 0.00 39.09 2.69
4118 5360 9.555727 AAACAAGTTGTTATAAGCTAGAGTTGA 57.444 29.630 21.14 0.00 40.14 3.18
4119 5361 9.599322 CAAACAAGTTGTTATAAGCTAGAGTTG 57.401 33.333 21.14 7.61 40.14 3.16
4120 5362 9.555727 TCAAACAAGTTGTTATAAGCTAGAGTT 57.444 29.630 21.14 0.00 40.14 3.01
4121 5363 9.209175 CTCAAACAAGTTGTTATAAGCTAGAGT 57.791 33.333 21.14 0.00 40.14 3.24
4122 5364 9.424319 TCTCAAACAAGTTGTTATAAGCTAGAG 57.576 33.333 21.14 15.78 40.14 2.43
4123 5365 9.204570 GTCTCAAACAAGTTGTTATAAGCTAGA 57.795 33.333 21.14 12.54 40.14 2.43
4124 5366 9.209175 AGTCTCAAACAAGTTGTTATAAGCTAG 57.791 33.333 21.14 10.77 40.14 3.42
4125 5367 9.204570 GAGTCTCAAACAAGTTGTTATAAGCTA 57.795 33.333 21.14 1.98 40.14 3.32
4126 5368 7.715249 TGAGTCTCAAACAAGTTGTTATAAGCT 59.285 33.333 21.14 15.73 40.14 3.74
4127 5369 7.861630 TGAGTCTCAAACAAGTTGTTATAAGC 58.138 34.615 21.14 11.78 40.14 3.09
4134 5376 5.622233 GCCTTTTGAGTCTCAAACAAGTTGT 60.622 40.000 24.48 1.64 45.03 3.32
4204 5446 3.084786 CTCCGCTCCTTCTTTTGGAAAT 58.915 45.455 0.00 0.00 33.07 2.17
4241 5483 2.138596 ATTTGAAGCAGCGTTTGGTG 57.861 45.000 0.00 0.00 46.34 4.17
4248 5490 5.773239 ATGAATTGAAATTTGAAGCAGCG 57.227 34.783 0.00 0.00 0.00 5.18
4251 5493 6.699366 TGGCTATGAATTGAAATTTGAAGCA 58.301 32.000 0.00 0.00 32.64 3.91
4273 5515 2.872245 TGTTTCTTGAGACGAAAGCTGG 59.128 45.455 0.00 0.00 31.61 4.85
4274 5516 4.536364 TTGTTTCTTGAGACGAAAGCTG 57.464 40.909 0.00 0.00 31.61 4.24
4279 5521 5.878116 TCTCCTTTTTGTTTCTTGAGACGAA 59.122 36.000 0.00 0.00 0.00 3.85
4311 5553 8.752005 TTTTTATATTCTCAGCCTACAATGCT 57.248 30.769 0.00 0.00 40.41 3.79
4385 5627 2.620251 TCAGACGCCATCCCTATTTG 57.380 50.000 0.00 0.00 0.00 2.32
4398 5640 4.615949 AGAATTCAAGATCGGATCAGACG 58.384 43.478 19.47 5.41 0.00 4.18
4401 5643 8.774890 ATATCAAGAATTCAAGATCGGATCAG 57.225 34.615 19.47 11.57 0.00 2.90
4427 6379 5.417754 AGATTCACTCGCATGATGGATAT 57.582 39.130 0.00 0.00 0.00 1.63
4441 6393 2.577112 CGCGCGTCGAGATTCACT 60.577 61.111 24.19 0.00 41.67 3.41
4459 6411 4.856664 TCTTACGTCTAAATCGATGCCTC 58.143 43.478 0.00 0.00 0.00 4.70
4490 6442 1.062587 CTAAATCAAAGTGGCCTCGCG 59.937 52.381 3.32 0.00 0.00 5.87
4524 6478 4.263462 TGAATGTCTCAGCAATGGTACCTT 60.263 41.667 14.36 3.50 0.00 3.50
4526 6480 3.609853 TGAATGTCTCAGCAATGGTACC 58.390 45.455 4.43 4.43 0.00 3.34
4540 6494 2.738314 GCTTTGCCACCATTTGAATGTC 59.262 45.455 3.30 0.00 34.60 3.06
4542 6496 2.997986 GAGCTTTGCCACCATTTGAATG 59.002 45.455 0.00 0.00 36.17 2.67
4550 6504 2.035832 GCTAAAAAGAGCTTTGCCACCA 59.964 45.455 0.00 0.00 39.50 4.17
4587 6541 4.282195 ACTCTTGTCCTCTCCTGTAAGTTG 59.718 45.833 0.00 0.00 0.00 3.16
4597 6551 1.337635 CCACTGCACTCTTGTCCTCTC 60.338 57.143 0.00 0.00 0.00 3.20
4611 6565 2.941453 TGTCTCGTCTATTCCACTGC 57.059 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.