Multiple sequence alignment - TraesCS3A01G533400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G533400 chr3A 100.000 3420 0 0 1 3420 746147402 746143983 0.000000e+00 6316.0
1 TraesCS3A01G533400 chr3A 97.831 461 9 1 433 892 727417359 727417819 0.000000e+00 795.0
2 TraesCS3A01G533400 chr3A 77.530 1255 202 55 1013 2217 746187563 746188787 0.000000e+00 682.0
3 TraesCS3A01G533400 chr3A 74.013 1266 244 58 979 2217 746169266 746168059 1.460000e-118 436.0
4 TraesCS3A01G533400 chr3A 92.929 198 12 1 2748 2943 648556918 648556721 1.550000e-73 287.0
5 TraesCS3A01G533400 chr3B 95.258 1877 51 10 893 2746 828950621 828948760 0.000000e+00 2939.0
6 TraesCS3A01G533400 chr3B 95.859 483 20 0 2938 3420 828948773 828948291 0.000000e+00 782.0
7 TraesCS3A01G533400 chr3B 76.491 1459 245 70 1013 2400 829038780 829040211 0.000000e+00 704.0
8 TraesCS3A01G533400 chr3B 75.588 1487 267 62 1014 2435 828993303 828991848 0.000000e+00 647.0
9 TraesCS3A01G533400 chr3B 96.947 131 4 0 134 264 828950863 828950733 1.600000e-53 220.0
10 TraesCS3A01G533400 chr3B 92.063 126 9 1 1 126 13769078 13768954 3.510000e-40 176.0
11 TraesCS3A01G533400 chr3B 96.512 86 3 0 264 349 828950701 828950616 3.560000e-30 143.0
12 TraesCS3A01G533400 chr3B 87.952 83 10 0 267 349 828919201 828919119 7.810000e-17 99.0
13 TraesCS3A01G533400 chr3D 94.362 1880 67 18 893 2744 611198327 611196459 0.000000e+00 2848.0
14 TraesCS3A01G533400 chr3D 95.644 551 16 4 348 892 499950043 499950591 0.000000e+00 878.0
15 TraesCS3A01G533400 chr3D 95.636 550 16 4 349 892 499948778 499949325 0.000000e+00 876.0
16 TraesCS3A01G533400 chr3D 97.526 485 10 1 2938 3420 611196470 611195986 0.000000e+00 828.0
17 TraesCS3A01G533400 chr3D 75.623 1485 267 60 1014 2435 611211663 611210211 0.000000e+00 649.0
18 TraesCS3A01G533400 chr3D 75.081 1228 227 56 1018 2217 611217704 611216528 1.830000e-137 499.0
19 TraesCS3A01G533400 chr3D 93.103 145 10 0 348 492 547542950 547542806 2.670000e-51 213.0
20 TraesCS3A01G533400 chr3D 82.927 246 10 15 136 349 611198567 611198322 3.480000e-45 193.0
21 TraesCS3A01G533400 chr3D 96.591 88 3 0 2822 2909 68441726 68441813 2.750000e-31 147.0
22 TraesCS3A01G533400 chr3D 92.771 83 6 0 267 349 611253272 611253190 1.670000e-23 121.0
23 TraesCS3A01G533400 chr3D 86.250 80 11 0 136 215 611212010 611211931 1.690000e-13 87.9
24 TraesCS3A01G533400 chr3D 97.368 38 1 0 2905 2942 68455260 68455297 7.920000e-07 65.8
25 TraesCS3A01G533400 chr2D 95.993 549 16 3 348 892 398693027 398693573 0.000000e+00 887.0
26 TraesCS3A01G533400 chr2D 95.644 551 16 4 348 892 7802413 7802961 0.000000e+00 878.0
27 TraesCS3A01G533400 chr2D 95.644 551 16 4 348 892 398694291 398694839 0.000000e+00 878.0
28 TraesCS3A01G533400 chr2D 95.479 553 17 4 346 892 7801145 7801695 0.000000e+00 876.0
29 TraesCS3A01G533400 chr2A 90.476 546 34 7 347 892 19378211 19377684 0.000000e+00 704.0
30 TraesCS3A01G533400 chr2A 90.467 535 33 4 348 882 19376840 19376324 0.000000e+00 689.0
31 TraesCS3A01G533400 chr7B 97.938 194 4 0 2748 2941 51767049 51767242 1.520000e-88 337.0
32 TraesCS3A01G533400 chr1A 95.954 173 5 2 2771 2942 535687495 535687666 2.600000e-71 279.0
33 TraesCS3A01G533400 chr6B 98.333 120 2 0 3 122 702373141 702373022 9.620000e-51 211.0
34 TraesCS3A01G533400 chr6B 95.868 121 5 0 2822 2942 692119152 692119272 2.690000e-46 196.0
35 TraesCS3A01G533400 chr6B 95.082 122 6 0 1 122 415894439 415894560 3.480000e-45 193.0
36 TraesCS3A01G533400 chr6B 87.821 156 16 3 2946 3099 23022193 23022039 2.710000e-41 180.0
37 TraesCS3A01G533400 chr7D 92.414 145 11 0 348 492 246374860 246374716 1.240000e-49 207.0
38 TraesCS3A01G533400 chr7D 82.407 108 14 2 2946 3049 494212658 494212552 4.700000e-14 89.8
39 TraesCS3A01G533400 chr5B 97.521 121 3 0 2822 2942 538312820 538312700 1.240000e-49 207.0
40 TraesCS3A01G533400 chr5B 97.345 113 2 1 2831 2942 673359695 673359807 1.250000e-44 191.0
41 TraesCS3A01G533400 chr5A 94.815 135 3 2 1 135 389152925 389153055 1.240000e-49 207.0
42 TraesCS3A01G533400 chr5A 94.643 112 3 3 18 127 389153048 389153158 1.630000e-38 171.0
43 TraesCS3A01G533400 chr5A 93.694 111 4 3 18 127 389153193 389153301 2.730000e-36 163.0
44 TraesCS3A01G533400 chr5A 82.353 119 19 2 4 122 579403994 579403878 6.040000e-18 102.0
45 TraesCS3A01G533400 chrUn 83.945 218 22 10 388 597 238125074 238124862 2.690000e-46 196.0
46 TraesCS3A01G533400 chrUn 88.158 152 16 2 2949 3099 94749130 94748980 2.710000e-41 180.0
47 TraesCS3A01G533400 chr4A 93.333 120 6 2 2822 2941 49225745 49225862 3.510000e-40 176.0
48 TraesCS3A01G533400 chr4A 94.393 107 5 1 2836 2942 629354249 629354354 2.730000e-36 163.0
49 TraesCS3A01G533400 chr2B 90.984 122 10 1 1 122 50569373 50569253 2.730000e-36 163.0
50 TraesCS3A01G533400 chr2B 80.645 124 24 0 2946 3069 725746898 725747021 2.810000e-16 97.1
51 TraesCS3A01G533400 chr7A 82.569 109 18 1 2946 3054 601517494 601517387 1.010000e-15 95.3
52 TraesCS3A01G533400 chr5D 84.000 100 13 3 24 122 540003818 540003721 3.630000e-15 93.5
53 TraesCS3A01G533400 chr6D 79.661 118 16 6 2939 3050 36367832 36367947 1.020000e-10 78.7
54 TraesCS3A01G533400 chr1D 78.505 107 22 1 2946 3051 73274749 73274855 6.120000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G533400 chr3A 746143983 746147402 3419 True 6316.000000 6316 100.0000 1 3420 1 chr3A.!!$R2 3419
1 TraesCS3A01G533400 chr3A 746187563 746188787 1224 False 682.000000 682 77.5300 1013 2217 1 chr3A.!!$F2 1204
2 TraesCS3A01G533400 chr3A 746168059 746169266 1207 True 436.000000 436 74.0130 979 2217 1 chr3A.!!$R3 1238
3 TraesCS3A01G533400 chr3B 828948291 828950863 2572 True 1021.000000 2939 96.1440 134 3420 4 chr3B.!!$R4 3286
4 TraesCS3A01G533400 chr3B 829038780 829040211 1431 False 704.000000 704 76.4910 1013 2400 1 chr3B.!!$F1 1387
5 TraesCS3A01G533400 chr3B 828991848 828993303 1455 True 647.000000 647 75.5880 1014 2435 1 chr3B.!!$R3 1421
6 TraesCS3A01G533400 chr3D 611195986 611198567 2581 True 1289.666667 2848 91.6050 136 3420 3 chr3D.!!$R4 3284
7 TraesCS3A01G533400 chr3D 499948778 499950591 1813 False 877.000000 878 95.6400 348 892 2 chr3D.!!$F3 544
8 TraesCS3A01G533400 chr3D 611216528 611217704 1176 True 499.000000 499 75.0810 1018 2217 1 chr3D.!!$R2 1199
9 TraesCS3A01G533400 chr3D 611210211 611212010 1799 True 368.450000 649 80.9365 136 2435 2 chr3D.!!$R5 2299
10 TraesCS3A01G533400 chr2D 398693027 398694839 1812 False 882.500000 887 95.8185 348 892 2 chr2D.!!$F2 544
11 TraesCS3A01G533400 chr2D 7801145 7802961 1816 False 877.000000 878 95.5615 346 892 2 chr2D.!!$F1 546
12 TraesCS3A01G533400 chr2A 19376324 19378211 1887 True 696.500000 704 90.4715 347 892 2 chr2A.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.107848 GCTAATAGTGGGGTGCGTGT 60.108 55.0 0.0 0.0 0.00 4.49 F
863 900 0.463295 CATCTTCATGCCAGTCGCCT 60.463 55.0 0.0 0.0 36.24 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1403 0.116342 TCCAGTGGCTAACCTGGAGA 59.884 55.0 3.51 0.0 40.63 3.71 R
2839 4140 0.108138 ACCGATCTAAGCCACACTGC 60.108 55.0 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.637006 CCGTTAGATTGAAATTTGTGGGA 57.363 39.130 0.00 0.00 0.00 4.37
23 24 5.399013 CCGTTAGATTGAAATTTGTGGGAC 58.601 41.667 0.00 0.00 0.00 4.46
24 25 5.183140 CCGTTAGATTGAAATTTGTGGGACT 59.817 40.000 0.00 0.00 0.00 3.85
25 26 6.373216 CCGTTAGATTGAAATTTGTGGGACTA 59.627 38.462 0.00 0.00 0.00 2.59
26 27 7.094549 CCGTTAGATTGAAATTTGTGGGACTAA 60.095 37.037 0.00 0.00 0.00 2.24
27 28 8.458843 CGTTAGATTGAAATTTGTGGGACTAAT 58.541 33.333 0.00 0.00 0.00 1.73
30 31 8.193953 AGATTGAAATTTGTGGGACTAATTGT 57.806 30.769 0.00 0.00 34.66 2.71
31 32 8.090214 AGATTGAAATTTGTGGGACTAATTGTG 58.910 33.333 0.00 0.00 34.66 3.33
32 33 6.723298 TGAAATTTGTGGGACTAATTGTGT 57.277 33.333 0.00 0.00 34.66 3.72
33 34 6.511416 TGAAATTTGTGGGACTAATTGTGTG 58.489 36.000 0.00 0.00 34.66 3.82
34 35 5.467035 AATTTGTGGGACTAATTGTGTGG 57.533 39.130 0.00 0.00 33.53 4.17
35 36 3.586470 TTGTGGGACTAATTGTGTGGT 57.414 42.857 0.00 0.00 0.00 4.16
36 37 3.586470 TGTGGGACTAATTGTGTGGTT 57.414 42.857 0.00 0.00 0.00 3.67
37 38 3.482436 TGTGGGACTAATTGTGTGGTTC 58.518 45.455 0.00 0.00 0.00 3.62
38 39 3.137544 TGTGGGACTAATTGTGTGGTTCT 59.862 43.478 0.00 0.00 0.00 3.01
39 40 3.502211 GTGGGACTAATTGTGTGGTTCTG 59.498 47.826 0.00 0.00 0.00 3.02
40 41 3.392947 TGGGACTAATTGTGTGGTTCTGA 59.607 43.478 0.00 0.00 0.00 3.27
41 42 3.751698 GGGACTAATTGTGTGGTTCTGAC 59.248 47.826 0.00 0.00 0.00 3.51
42 43 4.505039 GGGACTAATTGTGTGGTTCTGACT 60.505 45.833 0.00 0.00 0.00 3.41
43 44 4.452455 GGACTAATTGTGTGGTTCTGACTG 59.548 45.833 0.00 0.00 0.00 3.51
44 45 4.389374 ACTAATTGTGTGGTTCTGACTGG 58.611 43.478 0.00 0.00 0.00 4.00
45 46 2.276732 ATTGTGTGGTTCTGACTGGG 57.723 50.000 0.00 0.00 0.00 4.45
46 47 0.916086 TTGTGTGGTTCTGACTGGGT 59.084 50.000 0.00 0.00 0.00 4.51
47 48 0.916086 TGTGTGGTTCTGACTGGGTT 59.084 50.000 0.00 0.00 0.00 4.11
48 49 1.308998 GTGTGGTTCTGACTGGGTTG 58.691 55.000 0.00 0.00 0.00 3.77
49 50 0.916086 TGTGGTTCTGACTGGGTTGT 59.084 50.000 0.00 0.00 0.00 3.32
50 51 1.308998 GTGGTTCTGACTGGGTTGTG 58.691 55.000 0.00 0.00 0.00 3.33
51 52 0.465460 TGGTTCTGACTGGGTTGTGC 60.465 55.000 0.00 0.00 0.00 4.57
52 53 1.507141 GGTTCTGACTGGGTTGTGCG 61.507 60.000 0.00 0.00 0.00 5.34
53 54 1.227823 TTCTGACTGGGTTGTGCGG 60.228 57.895 0.00 0.00 0.00 5.69
54 55 1.978455 TTCTGACTGGGTTGTGCGGT 61.978 55.000 0.00 0.00 0.00 5.68
55 56 2.203139 TGACTGGGTTGTGCGGTG 60.203 61.111 0.00 0.00 0.00 4.94
56 57 2.203153 GACTGGGTTGTGCGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
57 58 1.822186 GACTGGGTTGTGCGGTGTT 60.822 57.895 0.00 0.00 0.00 3.32
58 59 2.058829 GACTGGGTTGTGCGGTGTTG 62.059 60.000 0.00 0.00 0.00 3.33
59 60 2.044848 TGGGTTGTGCGGTGTTGT 60.045 55.556 0.00 0.00 0.00 3.32
60 61 2.335052 CTGGGTTGTGCGGTGTTGTG 62.335 60.000 0.00 0.00 0.00 3.33
61 62 2.411290 GGTTGTGCGGTGTTGTGG 59.589 61.111 0.00 0.00 0.00 4.17
62 63 2.411290 GTTGTGCGGTGTTGTGGG 59.589 61.111 0.00 0.00 0.00 4.61
63 64 2.830827 TTGTGCGGTGTTGTGGGG 60.831 61.111 0.00 0.00 0.00 4.96
64 65 4.885270 TGTGCGGTGTTGTGGGGG 62.885 66.667 0.00 0.00 0.00 5.40
67 68 4.338710 GCGGTGTTGTGGGGGCTA 62.339 66.667 0.00 0.00 0.00 3.93
68 69 2.432563 CGGTGTTGTGGGGGCTAA 59.567 61.111 0.00 0.00 0.00 3.09
69 70 1.001393 CGGTGTTGTGGGGGCTAAT 60.001 57.895 0.00 0.00 0.00 1.73
70 71 0.253610 CGGTGTTGTGGGGGCTAATA 59.746 55.000 0.00 0.00 0.00 0.98
71 72 1.745827 CGGTGTTGTGGGGGCTAATAG 60.746 57.143 0.00 0.00 0.00 1.73
72 73 1.283905 GGTGTTGTGGGGGCTAATAGT 59.716 52.381 0.00 0.00 0.00 2.12
73 74 2.365582 GTGTTGTGGGGGCTAATAGTG 58.634 52.381 0.00 0.00 0.00 2.74
74 75 1.283613 TGTTGTGGGGGCTAATAGTGG 59.716 52.381 0.00 0.00 0.00 4.00
75 76 0.923358 TTGTGGGGGCTAATAGTGGG 59.077 55.000 0.00 0.00 0.00 4.61
76 77 0.991355 TGTGGGGGCTAATAGTGGGG 60.991 60.000 0.00 0.00 0.00 4.96
77 78 0.991893 GTGGGGGCTAATAGTGGGGT 60.992 60.000 0.00 0.00 0.00 4.95
78 79 0.991355 TGGGGGCTAATAGTGGGGTG 60.991 60.000 0.00 0.00 0.00 4.61
79 80 1.150764 GGGGCTAATAGTGGGGTGC 59.849 63.158 0.00 0.00 0.00 5.01
80 81 1.227853 GGGCTAATAGTGGGGTGCG 60.228 63.158 0.00 0.00 0.00 5.34
81 82 1.525442 GGCTAATAGTGGGGTGCGT 59.475 57.895 0.00 0.00 0.00 5.24
82 83 0.814010 GGCTAATAGTGGGGTGCGTG 60.814 60.000 0.00 0.00 0.00 5.34
83 84 0.107848 GCTAATAGTGGGGTGCGTGT 60.108 55.000 0.00 0.00 0.00 4.49
84 85 1.137479 GCTAATAGTGGGGTGCGTGTA 59.863 52.381 0.00 0.00 0.00 2.90
85 86 2.419021 GCTAATAGTGGGGTGCGTGTAA 60.419 50.000 0.00 0.00 0.00 2.41
86 87 2.396590 AATAGTGGGGTGCGTGTAAG 57.603 50.000 0.00 0.00 0.00 2.34
87 88 1.563924 ATAGTGGGGTGCGTGTAAGA 58.436 50.000 0.00 0.00 0.00 2.10
88 89 1.340088 TAGTGGGGTGCGTGTAAGAA 58.660 50.000 0.00 0.00 0.00 2.52
89 90 0.470766 AGTGGGGTGCGTGTAAGAAA 59.529 50.000 0.00 0.00 0.00 2.52
90 91 0.872388 GTGGGGTGCGTGTAAGAAAG 59.128 55.000 0.00 0.00 0.00 2.62
91 92 0.470766 TGGGGTGCGTGTAAGAAAGT 59.529 50.000 0.00 0.00 0.00 2.66
92 93 1.134037 TGGGGTGCGTGTAAGAAAGTT 60.134 47.619 0.00 0.00 0.00 2.66
93 94 1.534163 GGGGTGCGTGTAAGAAAGTTC 59.466 52.381 0.00 0.00 0.00 3.01
94 95 2.490991 GGGTGCGTGTAAGAAAGTTCT 58.509 47.619 0.00 0.00 39.74 3.01
96 97 3.303791 GGGTGCGTGTAAGAAAGTTCTTG 60.304 47.826 15.09 1.44 46.34 3.02
97 98 3.311596 GGTGCGTGTAAGAAAGTTCTTGT 59.688 43.478 15.09 0.00 46.34 3.16
98 99 4.201881 GGTGCGTGTAAGAAAGTTCTTGTT 60.202 41.667 15.09 0.00 46.34 2.83
99 100 4.962151 GTGCGTGTAAGAAAGTTCTTGTTC 59.038 41.667 15.09 7.29 46.34 3.18
100 101 4.201576 GCGTGTAAGAAAGTTCTTGTTCG 58.798 43.478 15.09 15.18 46.34 3.95
101 102 4.026310 GCGTGTAAGAAAGTTCTTGTTCGA 60.026 41.667 15.09 0.00 46.34 3.71
102 103 5.333111 GCGTGTAAGAAAGTTCTTGTTCGAT 60.333 40.000 15.09 0.00 46.34 3.59
103 104 6.646636 CGTGTAAGAAAGTTCTTGTTCGATT 58.353 36.000 15.09 0.00 46.34 3.34
104 105 6.570058 CGTGTAAGAAAGTTCTTGTTCGATTG 59.430 38.462 15.09 0.00 46.34 2.67
105 106 7.407337 GTGTAAGAAAGTTCTTGTTCGATTGT 58.593 34.615 15.09 0.00 46.34 2.71
106 107 7.908601 GTGTAAGAAAGTTCTTGTTCGATTGTT 59.091 33.333 15.09 0.00 46.34 2.83
107 108 8.455682 TGTAAGAAAGTTCTTGTTCGATTGTTT 58.544 29.630 15.09 0.00 46.34 2.83
108 109 9.925268 GTAAGAAAGTTCTTGTTCGATTGTTTA 57.075 29.630 15.09 0.00 46.34 2.01
118 119 9.917129 TCTTGTTCGATTGTTTAATAGTAGTGA 57.083 29.630 0.00 0.00 0.00 3.41
121 122 9.917129 TGTTCGATTGTTTAATAGTAGTGAAGA 57.083 29.630 0.00 0.00 0.00 2.87
250 251 2.031191 GTGATGTCGTTGTTTCGGTTGT 59.969 45.455 0.00 0.00 0.00 3.32
339 372 1.656652 GACTCGCCAATGCTACACAT 58.343 50.000 0.00 0.00 42.30 3.21
342 375 1.739466 CTCGCCAATGCTACACATGTT 59.261 47.619 0.00 0.00 39.60 2.71
343 376 2.935849 CTCGCCAATGCTACACATGTTA 59.064 45.455 0.00 0.00 39.60 2.41
344 377 3.540617 TCGCCAATGCTACACATGTTAT 58.459 40.909 0.00 0.00 39.60 1.89
345 378 4.698575 TCGCCAATGCTACACATGTTATA 58.301 39.130 0.00 0.00 39.60 0.98
377 412 1.825281 GCAGCCCTCTCTCACACACT 61.825 60.000 0.00 0.00 0.00 3.55
414 449 7.020914 AGAAGACACAAGACACAAGAAATTC 57.979 36.000 0.00 0.00 0.00 2.17
838 875 1.726791 CACACATGCTACGGACTCAAC 59.273 52.381 0.00 0.00 0.00 3.18
863 900 0.463295 CATCTTCATGCCAGTCGCCT 60.463 55.000 0.00 0.00 36.24 5.52
972 1041 7.786305 CATTCTGTGCTACAAATGTTAGTTG 57.214 36.000 0.00 0.00 29.91 3.16
973 1042 6.935741 TTCTGTGCTACAAATGTTAGTTGT 57.064 33.333 0.33 0.33 41.89 3.32
974 1043 6.299023 TCTGTGCTACAAATGTTAGTTGTG 57.701 37.500 5.06 0.00 39.50 3.33
975 1044 6.052360 TCTGTGCTACAAATGTTAGTTGTGA 58.948 36.000 5.06 0.00 39.50 3.58
976 1045 6.710295 TCTGTGCTACAAATGTTAGTTGTGAT 59.290 34.615 5.06 0.00 39.50 3.06
977 1046 7.228507 TCTGTGCTACAAATGTTAGTTGTGATT 59.771 33.333 5.06 0.00 39.50 2.57
1290 1403 3.632333 TCTCTATGGTGGAGTCGTTCAT 58.368 45.455 0.00 0.00 33.06 2.57
1305 1426 2.633488 GTTCATCTCCAGGTTAGCCAC 58.367 52.381 0.00 0.00 37.19 5.01
1358 1481 9.303116 TGCCTTATTTTGTAACCAAGATTTCTA 57.697 29.630 0.00 0.00 29.12 2.10
1388 1512 1.216678 TCCCCCTTTTTGCACTTCTCA 59.783 47.619 0.00 0.00 0.00 3.27
1631 1778 7.506114 ACTGAGGTAGTTTCAACTGAATAACA 58.494 34.615 2.26 0.00 40.07 2.41
1725 2553 0.472471 AGTGTTTCTTCCCTGCGGAA 59.528 50.000 0.00 0.00 46.38 4.30
1795 2623 4.460263 TGATCCAGCGCAGGTAATTTTAT 58.540 39.130 19.20 2.48 35.08 1.40
1863 3085 4.452455 CCATTTAATCGCTTATCCTTCGCT 59.548 41.667 0.00 0.00 0.00 4.93
2169 3400 1.545582 CATTGCCAAACGGTCCTTGAT 59.454 47.619 0.00 0.00 0.00 2.57
2175 3406 2.549992 CCAAACGGTCCTTGATGTCTCA 60.550 50.000 0.00 0.00 0.00 3.27
2217 3448 3.312697 CGAGGCTTGGAAATAAAGTAGGC 59.687 47.826 0.00 0.00 0.00 3.93
2424 3700 8.400947 CAATAGTCAGTCACCTTTATGATTTGG 58.599 37.037 0.00 0.00 0.00 3.28
2442 3718 7.619050 TGATTTGGTATTACATTGCATTGGTT 58.381 30.769 12.87 0.58 0.00 3.67
2459 3735 7.613801 TGCATTGGTTGAGGTTTACTATGTAAT 59.386 33.333 0.00 0.00 0.00 1.89
2460 3736 7.915397 GCATTGGTTGAGGTTTACTATGTAATG 59.085 37.037 0.00 0.00 0.00 1.90
2461 3737 8.956426 CATTGGTTGAGGTTTACTATGTAATGT 58.044 33.333 0.00 0.00 0.00 2.71
2576 3869 2.811431 GGTGGATCGTGTGAAAATGTCA 59.189 45.455 0.00 0.00 0.00 3.58
2578 3871 4.219033 GTGGATCGTGTGAAAATGTCAAC 58.781 43.478 0.00 0.00 38.23 3.18
2587 3882 4.109050 GTGAAAATGTCAACGGAGCAAAA 58.891 39.130 0.00 0.00 38.23 2.44
2624 3919 4.299586 TCAAGCACCAAATCAGTATGGA 57.700 40.909 0.00 0.00 39.12 3.41
2729 4030 1.244816 ACGGGCTAACCAGAAAAAGC 58.755 50.000 0.00 0.00 40.22 3.51
2738 4039 6.697455 GGCTAACCAGAAAAAGCATAAATAGC 59.303 38.462 0.00 0.00 36.68 2.97
2739 4040 7.416777 GGCTAACCAGAAAAAGCATAAATAGCT 60.417 37.037 0.00 0.00 39.09 3.32
2752 4053 8.807948 AGCATAAATAGCTTAGAAAAAGGACA 57.192 30.769 0.00 0.00 39.87 4.02
2753 4054 8.897752 AGCATAAATAGCTTAGAAAAAGGACAG 58.102 33.333 0.00 0.00 39.87 3.51
2754 4055 8.893727 GCATAAATAGCTTAGAAAAAGGACAGA 58.106 33.333 0.00 0.00 0.00 3.41
2758 4059 8.926092 AATAGCTTAGAAAAAGGACAGAAACT 57.074 30.769 0.00 0.00 0.00 2.66
2759 4060 8.926092 ATAGCTTAGAAAAAGGACAGAAACTT 57.074 30.769 0.00 0.00 0.00 2.66
2760 4061 7.646548 AGCTTAGAAAAAGGACAGAAACTTT 57.353 32.000 0.00 0.00 38.48 2.66
2761 4062 8.747538 AGCTTAGAAAAAGGACAGAAACTTTA 57.252 30.769 0.00 0.00 35.99 1.85
2762 4063 8.622157 AGCTTAGAAAAAGGACAGAAACTTTAC 58.378 33.333 0.00 0.00 35.99 2.01
2763 4064 7.861372 GCTTAGAAAAAGGACAGAAACTTTACC 59.139 37.037 0.00 0.00 35.99 2.85
2764 4065 8.810990 TTAGAAAAAGGACAGAAACTTTACCA 57.189 30.769 0.00 0.00 35.99 3.25
2765 4066 7.898014 AGAAAAAGGACAGAAACTTTACCAT 57.102 32.000 0.00 0.00 35.99 3.55
2766 4067 7.941919 AGAAAAAGGACAGAAACTTTACCATC 58.058 34.615 0.00 0.00 35.99 3.51
2767 4068 7.780271 AGAAAAAGGACAGAAACTTTACCATCT 59.220 33.333 0.00 0.00 35.99 2.90
2768 4069 7.511959 AAAAGGACAGAAACTTTACCATCTC 57.488 36.000 0.00 0.00 35.99 2.75
2769 4070 5.167303 AGGACAGAAACTTTACCATCTCC 57.833 43.478 0.00 0.00 0.00 3.71
2770 4071 4.597507 AGGACAGAAACTTTACCATCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
2771 4072 4.695928 GGACAGAAACTTTACCATCTCCAC 59.304 45.833 0.00 0.00 0.00 4.02
2772 4073 4.652822 ACAGAAACTTTACCATCTCCACC 58.347 43.478 0.00 0.00 0.00 4.61
2773 4074 4.104102 ACAGAAACTTTACCATCTCCACCA 59.896 41.667 0.00 0.00 0.00 4.17
2774 4075 5.222130 ACAGAAACTTTACCATCTCCACCAT 60.222 40.000 0.00 0.00 0.00 3.55
2775 4076 6.012858 ACAGAAACTTTACCATCTCCACCATA 60.013 38.462 0.00 0.00 0.00 2.74
2776 4077 6.316390 CAGAAACTTTACCATCTCCACCATAC 59.684 42.308 0.00 0.00 0.00 2.39
2777 4078 4.402056 ACTTTACCATCTCCACCATACG 57.598 45.455 0.00 0.00 0.00 3.06
2778 4079 3.773119 ACTTTACCATCTCCACCATACGT 59.227 43.478 0.00 0.00 0.00 3.57
2779 4080 4.142004 ACTTTACCATCTCCACCATACGTC 60.142 45.833 0.00 0.00 0.00 4.34
2780 4081 0.744874 ACCATCTCCACCATACGTCG 59.255 55.000 0.00 0.00 0.00 5.12
2781 4082 0.597637 CCATCTCCACCATACGTCGC 60.598 60.000 0.00 0.00 0.00 5.19
2782 4083 0.385751 CATCTCCACCATACGTCGCT 59.614 55.000 0.00 0.00 0.00 4.93
2783 4084 0.669077 ATCTCCACCATACGTCGCTC 59.331 55.000 0.00 0.00 0.00 5.03
2784 4085 1.298413 CTCCACCATACGTCGCTCG 60.298 63.158 0.00 0.00 46.00 5.03
2801 4102 2.899838 GTGCAACGGTGTGGCTCA 60.900 61.111 0.66 0.00 32.93 4.26
2802 4103 2.112928 TGCAACGGTGTGGCTCAT 59.887 55.556 0.66 0.00 32.93 2.90
2803 4104 2.260154 TGCAACGGTGTGGCTCATG 61.260 57.895 0.66 0.00 32.93 3.07
2804 4105 2.981560 GCAACGGTGTGGCTCATGG 61.982 63.158 0.66 0.00 28.38 3.66
2805 4106 1.600636 CAACGGTGTGGCTCATGGT 60.601 57.895 0.00 0.00 0.00 3.55
2806 4107 1.302511 AACGGTGTGGCTCATGGTC 60.303 57.895 0.00 0.00 0.00 4.02
2807 4108 1.768684 AACGGTGTGGCTCATGGTCT 61.769 55.000 0.00 0.00 0.00 3.85
2808 4109 1.003355 CGGTGTGGCTCATGGTCTT 60.003 57.895 0.00 0.00 0.00 3.01
2809 4110 1.300971 CGGTGTGGCTCATGGTCTTG 61.301 60.000 0.00 0.00 0.00 3.02
2810 4111 1.589716 GGTGTGGCTCATGGTCTTGC 61.590 60.000 0.00 0.00 0.00 4.01
2811 4112 0.607489 GTGTGGCTCATGGTCTTGCT 60.607 55.000 0.00 0.00 0.00 3.91
2812 4113 0.321919 TGTGGCTCATGGTCTTGCTC 60.322 55.000 0.00 0.00 0.00 4.26
2813 4114 0.321919 GTGGCTCATGGTCTTGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
2814 4115 0.401356 TGGCTCATGGTCTTGCTCAA 59.599 50.000 0.00 0.00 0.00 3.02
2815 4116 0.807496 GGCTCATGGTCTTGCTCAAC 59.193 55.000 0.00 0.00 0.00 3.18
2816 4117 1.612726 GGCTCATGGTCTTGCTCAACT 60.613 52.381 0.00 0.00 0.00 3.16
2817 4118 2.157738 GCTCATGGTCTTGCTCAACTT 58.842 47.619 0.00 0.00 0.00 2.66
2818 4119 2.095364 GCTCATGGTCTTGCTCAACTTG 60.095 50.000 0.00 0.00 0.00 3.16
2819 4120 2.486982 CTCATGGTCTTGCTCAACTTGG 59.513 50.000 0.00 0.00 0.00 3.61
2820 4121 2.158623 TCATGGTCTTGCTCAACTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
2821 4122 2.435372 TGGTCTTGCTCAACTTGGTT 57.565 45.000 0.00 0.00 0.00 3.67
2822 4123 3.569194 TGGTCTTGCTCAACTTGGTTA 57.431 42.857 0.00 0.00 0.00 2.85
2823 4124 4.098914 TGGTCTTGCTCAACTTGGTTAT 57.901 40.909 0.00 0.00 0.00 1.89
2824 4125 5.235850 TGGTCTTGCTCAACTTGGTTATA 57.764 39.130 0.00 0.00 0.00 0.98
2825 4126 5.626142 TGGTCTTGCTCAACTTGGTTATAA 58.374 37.500 0.00 0.00 0.00 0.98
2826 4127 5.472137 TGGTCTTGCTCAACTTGGTTATAAC 59.528 40.000 7.09 7.09 0.00 1.89
2827 4128 5.472137 GGTCTTGCTCAACTTGGTTATAACA 59.528 40.000 17.16 1.24 0.00 2.41
2828 4129 6.016610 GGTCTTGCTCAACTTGGTTATAACAA 60.017 38.462 17.16 2.94 0.00 2.83
2829 4130 6.856426 GTCTTGCTCAACTTGGTTATAACAAC 59.144 38.462 17.16 1.72 0.00 3.32
2830 4131 6.544197 TCTTGCTCAACTTGGTTATAACAACA 59.456 34.615 17.16 4.36 0.00 3.33
2831 4132 6.701145 TGCTCAACTTGGTTATAACAACAA 57.299 33.333 17.16 11.46 0.00 2.83
2832 4133 6.734137 TGCTCAACTTGGTTATAACAACAAG 58.266 36.000 22.67 22.67 44.32 3.16
2833 4134 5.629435 GCTCAACTTGGTTATAACAACAAGC 59.371 40.000 23.55 15.71 42.97 4.01
2834 4135 5.753744 TCAACTTGGTTATAACAACAAGCG 58.246 37.500 23.55 18.07 42.97 4.68
2835 4136 4.155310 ACTTGGTTATAACAACAAGCGC 57.845 40.909 23.55 0.00 42.97 5.92
2836 4137 3.566322 ACTTGGTTATAACAACAAGCGCA 59.434 39.130 23.55 8.12 42.97 6.09
2837 4138 3.546002 TGGTTATAACAACAAGCGCAC 57.454 42.857 17.16 0.00 0.00 5.34
2838 4139 3.142951 TGGTTATAACAACAAGCGCACT 58.857 40.909 17.16 0.00 0.00 4.40
2839 4140 3.058570 TGGTTATAACAACAAGCGCACTG 60.059 43.478 17.16 9.33 0.00 3.66
2840 4141 2.892373 TATAACAACAAGCGCACTGC 57.108 45.000 11.47 0.00 46.98 4.40
2853 4154 3.612517 CACTGCAGTGTGGCTTAGA 57.387 52.632 34.04 0.00 40.96 2.10
2854 4155 2.105006 CACTGCAGTGTGGCTTAGAT 57.895 50.000 34.04 0.00 40.96 1.98
2855 4156 2.005451 CACTGCAGTGTGGCTTAGATC 58.995 52.381 34.04 0.00 40.96 2.75
2856 4157 1.284657 CTGCAGTGTGGCTTAGATCG 58.715 55.000 5.25 0.00 34.04 3.69
2857 4158 0.108186 TGCAGTGTGGCTTAGATCGG 60.108 55.000 0.00 0.00 34.04 4.18
2858 4159 0.108138 GCAGTGTGGCTTAGATCGGT 60.108 55.000 0.00 0.00 0.00 4.69
2859 4160 1.676014 GCAGTGTGGCTTAGATCGGTT 60.676 52.381 0.00 0.00 0.00 4.44
2860 4161 2.271800 CAGTGTGGCTTAGATCGGTTC 58.728 52.381 0.00 0.00 0.00 3.62
2861 4162 1.207329 AGTGTGGCTTAGATCGGTTCC 59.793 52.381 0.00 0.00 0.00 3.62
2862 4163 0.539986 TGTGGCTTAGATCGGTTCCC 59.460 55.000 0.00 0.00 0.00 3.97
2863 4164 0.831307 GTGGCTTAGATCGGTTCCCT 59.169 55.000 0.00 0.00 0.00 4.20
2864 4165 1.120530 TGGCTTAGATCGGTTCCCTC 58.879 55.000 0.00 0.00 0.00 4.30
2865 4166 1.343075 TGGCTTAGATCGGTTCCCTCT 60.343 52.381 0.00 0.00 0.00 3.69
2866 4167 1.069358 GGCTTAGATCGGTTCCCTCTG 59.931 57.143 0.00 0.00 0.00 3.35
2867 4168 2.032620 GCTTAGATCGGTTCCCTCTGA 58.967 52.381 0.00 0.00 0.00 3.27
2868 4169 2.035321 GCTTAGATCGGTTCCCTCTGAG 59.965 54.545 0.00 0.00 0.00 3.35
2869 4170 3.556999 CTTAGATCGGTTCCCTCTGAGA 58.443 50.000 6.17 0.00 0.00 3.27
2870 4171 2.765689 AGATCGGTTCCCTCTGAGAT 57.234 50.000 6.17 0.00 0.00 2.75
2871 4172 3.039252 AGATCGGTTCCCTCTGAGATT 57.961 47.619 6.17 0.00 0.00 2.40
2872 4173 2.697751 AGATCGGTTCCCTCTGAGATTG 59.302 50.000 6.17 0.00 0.00 2.67
2873 4174 2.231716 TCGGTTCCCTCTGAGATTGA 57.768 50.000 6.17 0.00 0.00 2.57
2874 4175 2.752030 TCGGTTCCCTCTGAGATTGAT 58.248 47.619 6.17 0.00 0.00 2.57
2875 4176 3.107601 TCGGTTCCCTCTGAGATTGATT 58.892 45.455 6.17 0.00 0.00 2.57
2876 4177 3.519510 TCGGTTCCCTCTGAGATTGATTT 59.480 43.478 6.17 0.00 0.00 2.17
2877 4178 3.624861 CGGTTCCCTCTGAGATTGATTTG 59.375 47.826 6.17 0.00 0.00 2.32
2878 4179 3.379688 GGTTCCCTCTGAGATTGATTTGC 59.620 47.826 6.17 0.00 0.00 3.68
2879 4180 4.268359 GTTCCCTCTGAGATTGATTTGCT 58.732 43.478 6.17 0.00 0.00 3.91
2880 4181 3.882444 TCCCTCTGAGATTGATTTGCTG 58.118 45.455 6.17 0.00 0.00 4.41
2881 4182 3.265221 TCCCTCTGAGATTGATTTGCTGT 59.735 43.478 6.17 0.00 0.00 4.40
2882 4183 4.471025 TCCCTCTGAGATTGATTTGCTGTA 59.529 41.667 6.17 0.00 0.00 2.74
2883 4184 5.131642 TCCCTCTGAGATTGATTTGCTGTAT 59.868 40.000 6.17 0.00 0.00 2.29
2884 4185 5.826737 CCCTCTGAGATTGATTTGCTGTATT 59.173 40.000 6.17 0.00 0.00 1.89
2885 4186 6.017275 CCCTCTGAGATTGATTTGCTGTATTC 60.017 42.308 6.17 0.00 0.00 1.75
2886 4187 6.541278 CCTCTGAGATTGATTTGCTGTATTCA 59.459 38.462 6.17 0.00 0.00 2.57
2887 4188 7.066645 CCTCTGAGATTGATTTGCTGTATTCAA 59.933 37.037 6.17 0.00 33.06 2.69
2888 4189 8.339344 TCTGAGATTGATTTGCTGTATTCAAA 57.661 30.769 0.00 0.00 37.75 2.69
2889 4190 8.239314 TCTGAGATTGATTTGCTGTATTCAAAC 58.761 33.333 0.00 0.00 36.40 2.93
2890 4191 7.022979 TGAGATTGATTTGCTGTATTCAAACG 58.977 34.615 0.00 0.00 36.40 3.60
2891 4192 7.094848 TGAGATTGATTTGCTGTATTCAAACGA 60.095 33.333 0.00 0.00 36.40 3.85
2892 4193 7.765307 AGATTGATTTGCTGTATTCAAACGAT 58.235 30.769 0.00 0.00 36.40 3.73
2893 4194 8.246180 AGATTGATTTGCTGTATTCAAACGATT 58.754 29.630 0.00 0.00 36.40 3.34
2894 4195 7.565450 TTGATTTGCTGTATTCAAACGATTG 57.435 32.000 0.00 0.00 36.40 2.67
2895 4196 6.676950 TGATTTGCTGTATTCAAACGATTGT 58.323 32.000 5.26 0.00 36.40 2.71
2896 4197 7.811653 TGATTTGCTGTATTCAAACGATTGTA 58.188 30.769 5.26 0.00 36.40 2.41
2897 4198 8.293157 TGATTTGCTGTATTCAAACGATTGTAA 58.707 29.630 5.26 0.00 36.40 2.41
2898 4199 7.845617 TTTGCTGTATTCAAACGATTGTAAC 57.154 32.000 5.26 3.56 37.79 2.50
2899 4200 5.933790 TGCTGTATTCAAACGATTGTAACC 58.066 37.500 5.26 0.00 37.79 2.85
2900 4201 5.470437 TGCTGTATTCAAACGATTGTAACCA 59.530 36.000 5.26 0.00 37.79 3.67
2901 4202 5.793457 GCTGTATTCAAACGATTGTAACCAC 59.207 40.000 5.26 2.68 37.79 4.16
2902 4203 6.566942 GCTGTATTCAAACGATTGTAACCACA 60.567 38.462 5.26 6.18 37.79 4.17
2903 4204 6.660722 TGTATTCAAACGATTGTAACCACAC 58.339 36.000 5.26 0.00 37.79 3.82
2904 4205 6.483974 TGTATTCAAACGATTGTAACCACACT 59.516 34.615 5.26 0.00 37.79 3.55
2905 4206 4.804608 TCAAACGATTGTAACCACACTG 57.195 40.909 5.26 0.00 37.79 3.66
2906 4207 3.562141 TCAAACGATTGTAACCACACTGG 59.438 43.478 5.26 0.00 39.51 4.00
2907 4208 4.924134 TCAAACGATTGTAACCACACTGGT 60.924 41.667 5.26 0.00 44.29 4.00
2919 4220 4.582701 CCACACTGGTTAAGCAATGAAA 57.417 40.909 21.60 0.00 31.35 2.69
2920 4221 5.138125 CCACACTGGTTAAGCAATGAAAT 57.862 39.130 21.60 0.00 31.35 2.17
2921 4222 5.163513 CCACACTGGTTAAGCAATGAAATC 58.836 41.667 21.60 0.00 31.35 2.17
2922 4223 5.047802 CCACACTGGTTAAGCAATGAAATCT 60.048 40.000 21.60 0.00 31.35 2.40
2923 4224 6.088824 CACACTGGTTAAGCAATGAAATCTC 58.911 40.000 21.60 0.00 0.00 2.75
2924 4225 6.006449 ACACTGGTTAAGCAATGAAATCTCT 58.994 36.000 21.60 0.00 0.00 3.10
2925 4226 6.491403 ACACTGGTTAAGCAATGAAATCTCTT 59.509 34.615 21.60 0.00 0.00 2.85
2926 4227 7.014615 ACACTGGTTAAGCAATGAAATCTCTTT 59.985 33.333 21.60 0.00 0.00 2.52
2927 4228 7.869429 CACTGGTTAAGCAATGAAATCTCTTTT 59.131 33.333 10.43 0.00 0.00 2.27
2928 4229 8.424133 ACTGGTTAAGCAATGAAATCTCTTTTT 58.576 29.630 8.94 0.00 0.00 1.94
3307 4737 2.040178 CTTACCGAGCTATTCCACCCT 58.960 52.381 0.00 0.00 0.00 4.34
3311 4741 0.106894 CGAGCTATTCCACCCTTCCC 59.893 60.000 0.00 0.00 0.00 3.97
3332 4762 3.107601 CTGACCTCCATTGGTTCCTCTA 58.892 50.000 1.86 0.00 41.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.183140 AGTCCCACAAATTTCAATCTAACGG 59.817 40.000 0.00 0.00 0.00 4.44
4 5 9.308000 ACAATTAGTCCCACAAATTTCAATCTA 57.692 29.630 0.00 0.00 0.00 1.98
5 6 8.090214 CACAATTAGTCCCACAAATTTCAATCT 58.910 33.333 0.00 0.00 0.00 2.40
6 7 7.872483 ACACAATTAGTCCCACAAATTTCAATC 59.128 33.333 0.00 0.00 0.00 2.67
7 8 7.656948 CACACAATTAGTCCCACAAATTTCAAT 59.343 33.333 0.00 0.00 0.00 2.57
8 9 6.983307 CACACAATTAGTCCCACAAATTTCAA 59.017 34.615 0.00 0.00 0.00 2.69
9 10 6.462207 CCACACAATTAGTCCCACAAATTTCA 60.462 38.462 0.00 0.00 0.00 2.69
10 11 5.925969 CCACACAATTAGTCCCACAAATTTC 59.074 40.000 0.00 0.00 0.00 2.17
11 12 5.365314 ACCACACAATTAGTCCCACAAATTT 59.635 36.000 0.00 0.00 0.00 1.82
12 13 4.898861 ACCACACAATTAGTCCCACAAATT 59.101 37.500 0.00 0.00 0.00 1.82
13 14 4.479158 ACCACACAATTAGTCCCACAAAT 58.521 39.130 0.00 0.00 0.00 2.32
14 15 3.904717 ACCACACAATTAGTCCCACAAA 58.095 40.909 0.00 0.00 0.00 2.83
15 16 3.586470 ACCACACAATTAGTCCCACAA 57.414 42.857 0.00 0.00 0.00 3.33
16 17 3.137544 AGAACCACACAATTAGTCCCACA 59.862 43.478 0.00 0.00 0.00 4.17
17 18 3.502211 CAGAACCACACAATTAGTCCCAC 59.498 47.826 0.00 0.00 0.00 4.61
18 19 3.392947 TCAGAACCACACAATTAGTCCCA 59.607 43.478 0.00 0.00 0.00 4.37
19 20 3.751698 GTCAGAACCACACAATTAGTCCC 59.248 47.826 0.00 0.00 0.00 4.46
20 21 4.452455 CAGTCAGAACCACACAATTAGTCC 59.548 45.833 0.00 0.00 0.00 3.85
21 22 4.452455 CCAGTCAGAACCACACAATTAGTC 59.548 45.833 0.00 0.00 0.00 2.59
22 23 4.389374 CCAGTCAGAACCACACAATTAGT 58.611 43.478 0.00 0.00 0.00 2.24
23 24 3.753272 CCCAGTCAGAACCACACAATTAG 59.247 47.826 0.00 0.00 0.00 1.73
24 25 3.137544 ACCCAGTCAGAACCACACAATTA 59.862 43.478 0.00 0.00 0.00 1.40
25 26 2.091885 ACCCAGTCAGAACCACACAATT 60.092 45.455 0.00 0.00 0.00 2.32
26 27 1.494721 ACCCAGTCAGAACCACACAAT 59.505 47.619 0.00 0.00 0.00 2.71
27 28 0.916086 ACCCAGTCAGAACCACACAA 59.084 50.000 0.00 0.00 0.00 3.33
28 29 0.916086 AACCCAGTCAGAACCACACA 59.084 50.000 0.00 0.00 0.00 3.72
29 30 1.308998 CAACCCAGTCAGAACCACAC 58.691 55.000 0.00 0.00 0.00 3.82
30 31 0.916086 ACAACCCAGTCAGAACCACA 59.084 50.000 0.00 0.00 0.00 4.17
31 32 1.308998 CACAACCCAGTCAGAACCAC 58.691 55.000 0.00 0.00 0.00 4.16
32 33 0.465460 GCACAACCCAGTCAGAACCA 60.465 55.000 0.00 0.00 0.00 3.67
33 34 1.507141 CGCACAACCCAGTCAGAACC 61.507 60.000 0.00 0.00 0.00 3.62
34 35 1.507141 CCGCACAACCCAGTCAGAAC 61.507 60.000 0.00 0.00 0.00 3.01
35 36 1.227823 CCGCACAACCCAGTCAGAA 60.228 57.895 0.00 0.00 0.00 3.02
36 37 2.425592 CCGCACAACCCAGTCAGA 59.574 61.111 0.00 0.00 0.00 3.27
37 38 2.111043 ACCGCACAACCCAGTCAG 59.889 61.111 0.00 0.00 0.00 3.51
38 39 2.203139 CACCGCACAACCCAGTCA 60.203 61.111 0.00 0.00 0.00 3.41
39 40 1.822186 AACACCGCACAACCCAGTC 60.822 57.895 0.00 0.00 0.00 3.51
40 41 2.118404 CAACACCGCACAACCCAGT 61.118 57.895 0.00 0.00 0.00 4.00
41 42 2.118404 ACAACACCGCACAACCCAG 61.118 57.895 0.00 0.00 0.00 4.45
42 43 2.044848 ACAACACCGCACAACCCA 60.045 55.556 0.00 0.00 0.00 4.51
43 44 2.411290 CACAACACCGCACAACCC 59.589 61.111 0.00 0.00 0.00 4.11
44 45 2.411290 CCACAACACCGCACAACC 59.589 61.111 0.00 0.00 0.00 3.77
45 46 2.411290 CCCACAACACCGCACAAC 59.589 61.111 0.00 0.00 0.00 3.32
46 47 2.830827 CCCCACAACACCGCACAA 60.831 61.111 0.00 0.00 0.00 3.33
47 48 4.885270 CCCCCACAACACCGCACA 62.885 66.667 0.00 0.00 0.00 4.57
50 51 3.733295 TATTAGCCCCCACAACACCGC 62.733 57.143 0.00 0.00 0.00 5.68
51 52 0.253610 TATTAGCCCCCACAACACCG 59.746 55.000 0.00 0.00 0.00 4.94
52 53 1.283905 ACTATTAGCCCCCACAACACC 59.716 52.381 0.00 0.00 0.00 4.16
53 54 2.365582 CACTATTAGCCCCCACAACAC 58.634 52.381 0.00 0.00 0.00 3.32
54 55 1.283613 CCACTATTAGCCCCCACAACA 59.716 52.381 0.00 0.00 0.00 3.33
55 56 1.409661 CCCACTATTAGCCCCCACAAC 60.410 57.143 0.00 0.00 0.00 3.32
56 57 0.923358 CCCACTATTAGCCCCCACAA 59.077 55.000 0.00 0.00 0.00 3.33
57 58 0.991355 CCCCACTATTAGCCCCCACA 60.991 60.000 0.00 0.00 0.00 4.17
58 59 0.991893 ACCCCACTATTAGCCCCCAC 60.992 60.000 0.00 0.00 0.00 4.61
59 60 0.991355 CACCCCACTATTAGCCCCCA 60.991 60.000 0.00 0.00 0.00 4.96
60 61 1.844130 CACCCCACTATTAGCCCCC 59.156 63.158 0.00 0.00 0.00 5.40
61 62 1.150764 GCACCCCACTATTAGCCCC 59.849 63.158 0.00 0.00 0.00 5.80
62 63 1.227853 CGCACCCCACTATTAGCCC 60.228 63.158 0.00 0.00 0.00 5.19
63 64 0.814010 CACGCACCCCACTATTAGCC 60.814 60.000 0.00 0.00 0.00 3.93
64 65 0.107848 ACACGCACCCCACTATTAGC 60.108 55.000 0.00 0.00 0.00 3.09
65 66 3.131577 TCTTACACGCACCCCACTATTAG 59.868 47.826 0.00 0.00 0.00 1.73
66 67 3.098377 TCTTACACGCACCCCACTATTA 58.902 45.455 0.00 0.00 0.00 0.98
67 68 1.903860 TCTTACACGCACCCCACTATT 59.096 47.619 0.00 0.00 0.00 1.73
68 69 1.563924 TCTTACACGCACCCCACTAT 58.436 50.000 0.00 0.00 0.00 2.12
69 70 1.340088 TTCTTACACGCACCCCACTA 58.660 50.000 0.00 0.00 0.00 2.74
70 71 0.470766 TTTCTTACACGCACCCCACT 59.529 50.000 0.00 0.00 0.00 4.00
71 72 0.872388 CTTTCTTACACGCACCCCAC 59.128 55.000 0.00 0.00 0.00 4.61
72 73 0.470766 ACTTTCTTACACGCACCCCA 59.529 50.000 0.00 0.00 0.00 4.96
73 74 1.534163 GAACTTTCTTACACGCACCCC 59.466 52.381 0.00 0.00 0.00 4.95
74 75 2.490991 AGAACTTTCTTACACGCACCC 58.509 47.619 0.00 0.00 32.55 4.61
75 76 3.311596 ACAAGAACTTTCTTACACGCACC 59.688 43.478 3.91 0.00 45.23 5.01
76 77 4.531659 ACAAGAACTTTCTTACACGCAC 57.468 40.909 3.91 0.00 45.23 5.34
77 78 4.260051 CGAACAAGAACTTTCTTACACGCA 60.260 41.667 3.91 0.00 45.23 5.24
78 79 4.026310 TCGAACAAGAACTTTCTTACACGC 60.026 41.667 3.91 0.00 45.23 5.34
79 80 5.630896 TCGAACAAGAACTTTCTTACACG 57.369 39.130 3.91 9.55 45.23 4.49
80 81 7.407337 ACAATCGAACAAGAACTTTCTTACAC 58.593 34.615 3.91 0.00 45.23 2.90
81 82 7.548196 ACAATCGAACAAGAACTTTCTTACA 57.452 32.000 3.91 0.00 45.23 2.41
82 83 8.836959 AAACAATCGAACAAGAACTTTCTTAC 57.163 30.769 3.91 0.00 45.23 2.34
92 93 9.917129 TCACTACTATTAAACAATCGAACAAGA 57.083 29.630 0.00 0.00 0.00 3.02
95 96 9.917129 TCTTCACTACTATTAAACAATCGAACA 57.083 29.630 0.00 0.00 0.00 3.18
107 108 9.529823 TCTCCACTTCTTTCTTCACTACTATTA 57.470 33.333 0.00 0.00 0.00 0.98
108 109 8.423906 TCTCCACTTCTTTCTTCACTACTATT 57.576 34.615 0.00 0.00 0.00 1.73
109 110 8.602472 ATCTCCACTTCTTTCTTCACTACTAT 57.398 34.615 0.00 0.00 0.00 2.12
110 111 8.307483 CAATCTCCACTTCTTTCTTCACTACTA 58.693 37.037 0.00 0.00 0.00 1.82
111 112 6.926630 ATCTCCACTTCTTTCTTCACTACT 57.073 37.500 0.00 0.00 0.00 2.57
112 113 6.370166 CCAATCTCCACTTCTTTCTTCACTAC 59.630 42.308 0.00 0.00 0.00 2.73
113 114 6.270000 TCCAATCTCCACTTCTTTCTTCACTA 59.730 38.462 0.00 0.00 0.00 2.74
114 115 5.072329 TCCAATCTCCACTTCTTTCTTCACT 59.928 40.000 0.00 0.00 0.00 3.41
115 116 5.308825 TCCAATCTCCACTTCTTTCTTCAC 58.691 41.667 0.00 0.00 0.00 3.18
116 117 5.567037 TCCAATCTCCACTTCTTTCTTCA 57.433 39.130 0.00 0.00 0.00 3.02
117 118 5.765182 TGTTCCAATCTCCACTTCTTTCTTC 59.235 40.000 0.00 0.00 0.00 2.87
118 119 5.694995 TGTTCCAATCTCCACTTCTTTCTT 58.305 37.500 0.00 0.00 0.00 2.52
119 120 5.310409 TGTTCCAATCTCCACTTCTTTCT 57.690 39.130 0.00 0.00 0.00 2.52
120 121 6.391227 TTTGTTCCAATCTCCACTTCTTTC 57.609 37.500 0.00 0.00 0.00 2.62
121 122 5.221322 GCTTTGTTCCAATCTCCACTTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
122 123 4.279420 GCTTTGTTCCAATCTCCACTTCTT 59.721 41.667 0.00 0.00 0.00 2.52
123 124 3.823304 GCTTTGTTCCAATCTCCACTTCT 59.177 43.478 0.00 0.00 0.00 2.85
124 125 3.057245 GGCTTTGTTCCAATCTCCACTTC 60.057 47.826 0.00 0.00 0.00 3.01
125 126 2.893489 GGCTTTGTTCCAATCTCCACTT 59.107 45.455 0.00 0.00 0.00 3.16
126 127 2.108952 AGGCTTTGTTCCAATCTCCACT 59.891 45.455 0.00 0.00 0.00 4.00
127 128 2.519013 AGGCTTTGTTCCAATCTCCAC 58.481 47.619 0.00 0.00 0.00 4.02
128 129 2.978156 AGGCTTTGTTCCAATCTCCA 57.022 45.000 0.00 0.00 0.00 3.86
129 130 2.678336 CGTAGGCTTTGTTCCAATCTCC 59.322 50.000 0.00 0.00 0.00 3.71
130 131 3.125316 CACGTAGGCTTTGTTCCAATCTC 59.875 47.826 0.00 0.00 0.00 2.75
131 132 3.074412 CACGTAGGCTTTGTTCCAATCT 58.926 45.455 0.00 0.00 0.00 2.40
132 133 2.414161 GCACGTAGGCTTTGTTCCAATC 60.414 50.000 0.00 0.00 0.00 2.67
229 230 2.031191 ACAACCGAAACAACGACATCAC 59.969 45.455 0.00 0.00 35.09 3.06
250 251 3.817084 CTGAAGTGCAACATCTCCTGAAA 59.183 43.478 0.00 0.00 41.43 2.69
339 372 3.741249 TGCGGTTCCAACAAGTATAACA 58.259 40.909 0.00 0.00 0.00 2.41
342 375 2.352388 GCTGCGGTTCCAACAAGTATA 58.648 47.619 0.00 0.00 0.00 1.47
343 376 1.165270 GCTGCGGTTCCAACAAGTAT 58.835 50.000 0.00 0.00 0.00 2.12
344 377 0.887387 GGCTGCGGTTCCAACAAGTA 60.887 55.000 0.00 0.00 0.00 2.24
345 378 2.193536 GGCTGCGGTTCCAACAAGT 61.194 57.895 0.00 0.00 0.00 3.16
377 412 5.801531 TGTGTCTTCTTCTACCTTTAGCA 57.198 39.130 0.00 0.00 0.00 3.49
741 778 1.421485 CGTTGCGATCTGTTGGAGC 59.579 57.895 0.00 0.00 0.00 4.70
824 861 0.830444 ACCAGGTTGAGTCCGTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
838 875 1.064906 ACTGGCATGAAGATGACCAGG 60.065 52.381 20.14 0.00 46.99 4.45
903 940 5.964958 TGCTCAATTTATATTAGCCCAGC 57.035 39.130 0.00 0.00 32.14 4.85
972 1041 5.591099 ACATGGTTCTTGTTCACAAATCAC 58.409 37.500 0.00 0.00 35.15 3.06
973 1042 5.850557 ACATGGTTCTTGTTCACAAATCA 57.149 34.783 0.00 0.00 35.15 2.57
974 1043 8.641499 TTTTACATGGTTCTTGTTCACAAATC 57.359 30.769 0.00 0.00 35.15 2.17
975 1044 9.612066 ATTTTTACATGGTTCTTGTTCACAAAT 57.388 25.926 0.00 0.00 35.15 2.32
976 1045 8.877779 CATTTTTACATGGTTCTTGTTCACAAA 58.122 29.630 0.00 0.00 35.15 2.83
977 1046 8.253810 TCATTTTTACATGGTTCTTGTTCACAA 58.746 29.630 0.00 0.00 0.00 3.33
1070 1147 2.223537 ATCGTCGCAATGCACTATCA 57.776 45.000 5.91 0.00 0.00 2.15
1250 1363 2.907042 AGAGATCGGAAGGACCTTTGTT 59.093 45.455 8.49 0.00 36.31 2.83
1290 1403 0.116342 TCCAGTGGCTAACCTGGAGA 59.884 55.000 3.51 0.00 40.63 3.71
1305 1426 8.296713 TGCTATTAAAGTTTTAAGCAAGTCCAG 58.703 33.333 13.63 0.00 36.22 3.86
1358 1481 4.904853 TGCAAAAAGGGGGAAAAGATAACT 59.095 37.500 0.00 0.00 0.00 2.24
1388 1512 6.627243 AGCCTTTTCTAAAAGTCGTGTTTTT 58.373 32.000 12.80 2.36 42.92 1.94
1725 2553 4.385310 GGGGTGTGGATGCTCTTAATAAGT 60.385 45.833 0.00 0.00 0.00 2.24
2217 3448 7.304735 TGTGATTTATTGTGGATTTCGAACTG 58.695 34.615 0.00 0.00 0.00 3.16
2253 3525 4.478203 TCAATCCAAGAAACAACATGGGA 58.522 39.130 0.00 0.00 33.66 4.37
2424 3700 6.207691 ACCTCAACCAATGCAATGTAATAC 57.792 37.500 0.21 0.00 0.00 1.89
2459 3735 7.047891 TCTCTTTCTTTCTTGCACTCTTTACA 58.952 34.615 0.00 0.00 0.00 2.41
2460 3736 7.484035 TCTCTTTCTTTCTTGCACTCTTTAC 57.516 36.000 0.00 0.00 0.00 2.01
2461 3737 8.506168 TTTCTCTTTCTTTCTTGCACTCTTTA 57.494 30.769 0.00 0.00 0.00 1.85
2462 3738 7.396540 TTTCTCTTTCTTTCTTGCACTCTTT 57.603 32.000 0.00 0.00 0.00 2.52
2463 3739 7.396540 TTTTCTCTTTCTTTCTTGCACTCTT 57.603 32.000 0.00 0.00 0.00 2.85
2539 3832 2.845586 TCCACCATCATTCATCTGACCA 59.154 45.455 0.00 0.00 0.00 4.02
2594 3889 8.121305 ACTGATTTGGTGCTTGAAATACAATA 57.879 30.769 0.00 0.00 37.88 1.90
2596 3891 6.403866 ACTGATTTGGTGCTTGAAATACAA 57.596 33.333 0.00 0.00 36.97 2.41
2697 3998 6.471146 TGGTTAGCCCGTAAAGTACATTTTA 58.529 36.000 0.00 0.00 35.15 1.52
2698 3999 5.315348 TGGTTAGCCCGTAAAGTACATTTT 58.685 37.500 0.00 0.00 35.15 1.82
2702 4003 3.164268 TCTGGTTAGCCCGTAAAGTACA 58.836 45.455 0.00 0.00 35.15 2.90
2738 4039 8.899771 TGGTAAAGTTTCTGTCCTTTTTCTAAG 58.100 33.333 0.00 0.00 33.24 2.18
2739 4040 8.810990 TGGTAAAGTTTCTGTCCTTTTTCTAA 57.189 30.769 0.00 0.00 33.24 2.10
2740 4041 8.990163 ATGGTAAAGTTTCTGTCCTTTTTCTA 57.010 30.769 0.00 0.00 33.24 2.10
2741 4042 7.780271 AGATGGTAAAGTTTCTGTCCTTTTTCT 59.220 33.333 0.00 0.00 33.24 2.52
2742 4043 7.941919 AGATGGTAAAGTTTCTGTCCTTTTTC 58.058 34.615 0.00 0.00 33.24 2.29
2743 4044 7.014326 GGAGATGGTAAAGTTTCTGTCCTTTTT 59.986 37.037 0.00 0.00 33.24 1.94
2744 4045 6.490381 GGAGATGGTAAAGTTTCTGTCCTTTT 59.510 38.462 0.00 0.00 33.24 2.27
2745 4046 6.004574 GGAGATGGTAAAGTTTCTGTCCTTT 58.995 40.000 0.00 0.00 35.25 3.11
2746 4047 5.073144 TGGAGATGGTAAAGTTTCTGTCCTT 59.927 40.000 0.00 0.00 0.00 3.36
2747 4048 4.597507 TGGAGATGGTAAAGTTTCTGTCCT 59.402 41.667 0.00 0.00 0.00 3.85
2748 4049 4.695928 GTGGAGATGGTAAAGTTTCTGTCC 59.304 45.833 0.00 0.00 0.00 4.02
2749 4050 4.695928 GGTGGAGATGGTAAAGTTTCTGTC 59.304 45.833 0.00 0.00 0.00 3.51
2750 4051 4.104102 TGGTGGAGATGGTAAAGTTTCTGT 59.896 41.667 0.00 0.00 0.00 3.41
2751 4052 4.651778 TGGTGGAGATGGTAAAGTTTCTG 58.348 43.478 0.00 0.00 0.00 3.02
2752 4053 4.993705 TGGTGGAGATGGTAAAGTTTCT 57.006 40.909 0.00 0.00 0.00 2.52
2753 4054 5.293569 CGTATGGTGGAGATGGTAAAGTTTC 59.706 44.000 0.00 0.00 0.00 2.78
2754 4055 5.183228 CGTATGGTGGAGATGGTAAAGTTT 58.817 41.667 0.00 0.00 0.00 2.66
2755 4056 4.224370 ACGTATGGTGGAGATGGTAAAGTT 59.776 41.667 0.00 0.00 0.00 2.66
2756 4057 3.773119 ACGTATGGTGGAGATGGTAAAGT 59.227 43.478 0.00 0.00 0.00 2.66
2757 4058 4.369182 GACGTATGGTGGAGATGGTAAAG 58.631 47.826 0.00 0.00 0.00 1.85
2758 4059 3.181484 CGACGTATGGTGGAGATGGTAAA 60.181 47.826 0.00 0.00 0.00 2.01
2759 4060 2.359848 CGACGTATGGTGGAGATGGTAA 59.640 50.000 0.00 0.00 0.00 2.85
2760 4061 1.951602 CGACGTATGGTGGAGATGGTA 59.048 52.381 0.00 0.00 0.00 3.25
2761 4062 0.744874 CGACGTATGGTGGAGATGGT 59.255 55.000 0.00 0.00 0.00 3.55
2762 4063 0.597637 GCGACGTATGGTGGAGATGG 60.598 60.000 0.00 0.00 0.00 3.51
2763 4064 0.385751 AGCGACGTATGGTGGAGATG 59.614 55.000 0.00 0.00 0.00 2.90
2764 4065 0.669077 GAGCGACGTATGGTGGAGAT 59.331 55.000 0.00 0.00 0.00 2.75
2765 4066 1.712018 CGAGCGACGTATGGTGGAGA 61.712 60.000 0.00 0.00 37.22 3.71
2766 4067 1.298413 CGAGCGACGTATGGTGGAG 60.298 63.158 0.00 0.00 37.22 3.86
2767 4068 2.795973 CGAGCGACGTATGGTGGA 59.204 61.111 0.00 0.00 37.22 4.02
2778 4079 4.578898 ACACCGTTGCACGAGCGA 62.579 61.111 9.75 0.00 46.05 4.93
2779 4080 4.354212 CACACCGTTGCACGAGCG 62.354 66.667 9.75 1.87 46.05 5.03
2780 4081 4.012895 CCACACCGTTGCACGAGC 62.013 66.667 9.75 0.00 46.05 5.03
2781 4082 4.012895 GCCACACCGTTGCACGAG 62.013 66.667 9.75 5.32 46.05 4.18
2782 4083 4.539083 AGCCACACCGTTGCACGA 62.539 61.111 9.75 0.00 46.05 4.35
2783 4084 4.012895 GAGCCACACCGTTGCACG 62.013 66.667 0.00 0.00 42.11 5.34
2784 4085 2.260869 ATGAGCCACACCGTTGCAC 61.261 57.895 0.00 0.00 0.00 4.57
2785 4086 2.112928 ATGAGCCACACCGTTGCA 59.887 55.556 0.00 0.00 0.00 4.08
2786 4087 2.562912 CATGAGCCACACCGTTGC 59.437 61.111 0.00 0.00 0.00 4.17
2787 4088 1.577328 GACCATGAGCCACACCGTTG 61.577 60.000 0.00 0.00 0.00 4.10
2788 4089 1.302511 GACCATGAGCCACACCGTT 60.303 57.895 0.00 0.00 0.00 4.44
2789 4090 1.768684 AAGACCATGAGCCACACCGT 61.769 55.000 0.00 0.00 0.00 4.83
2790 4091 1.003355 AAGACCATGAGCCACACCG 60.003 57.895 0.00 0.00 0.00 4.94
2791 4092 1.589716 GCAAGACCATGAGCCACACC 61.590 60.000 0.00 0.00 0.00 4.16
2792 4093 0.607489 AGCAAGACCATGAGCCACAC 60.607 55.000 0.00 0.00 0.00 3.82
2793 4094 0.321919 GAGCAAGACCATGAGCCACA 60.322 55.000 0.00 0.00 0.00 4.17
2794 4095 0.321919 TGAGCAAGACCATGAGCCAC 60.322 55.000 0.00 0.00 0.00 5.01
2795 4096 0.401356 TTGAGCAAGACCATGAGCCA 59.599 50.000 0.00 0.00 0.00 4.75
2796 4097 0.807496 GTTGAGCAAGACCATGAGCC 59.193 55.000 0.00 0.00 0.00 4.70
2797 4098 1.818642 AGTTGAGCAAGACCATGAGC 58.181 50.000 0.00 0.00 0.00 4.26
2798 4099 2.486982 CCAAGTTGAGCAAGACCATGAG 59.513 50.000 3.87 0.00 0.00 2.90
2799 4100 2.158623 ACCAAGTTGAGCAAGACCATGA 60.159 45.455 3.87 0.00 0.00 3.07
2800 4101 2.233271 ACCAAGTTGAGCAAGACCATG 58.767 47.619 3.87 0.00 0.00 3.66
2801 4102 2.664402 ACCAAGTTGAGCAAGACCAT 57.336 45.000 3.87 0.00 0.00 3.55
2802 4103 2.435372 AACCAAGTTGAGCAAGACCA 57.565 45.000 3.87 0.00 0.00 4.02
2803 4104 5.472137 TGTTATAACCAAGTTGAGCAAGACC 59.528 40.000 13.01 0.00 0.00 3.85
2804 4105 6.554334 TGTTATAACCAAGTTGAGCAAGAC 57.446 37.500 13.01 0.00 0.00 3.01
2805 4106 6.544197 TGTTGTTATAACCAAGTTGAGCAAGA 59.456 34.615 13.01 0.00 0.00 3.02
2806 4107 6.734137 TGTTGTTATAACCAAGTTGAGCAAG 58.266 36.000 13.01 0.00 0.00 4.01
2807 4108 6.701145 TGTTGTTATAACCAAGTTGAGCAA 57.299 33.333 13.01 0.00 0.00 3.91
2808 4109 6.701145 TTGTTGTTATAACCAAGTTGAGCA 57.299 33.333 13.01 0.00 0.00 4.26
2809 4110 5.629435 GCTTGTTGTTATAACCAAGTTGAGC 59.371 40.000 23.86 15.70 0.00 4.26
2810 4111 5.851177 CGCTTGTTGTTATAACCAAGTTGAG 59.149 40.000 23.86 14.95 0.00 3.02
2811 4112 5.753744 CGCTTGTTGTTATAACCAAGTTGA 58.246 37.500 23.86 2.20 0.00 3.18
2812 4113 4.381566 GCGCTTGTTGTTATAACCAAGTTG 59.618 41.667 23.86 19.67 0.00 3.16
2813 4114 4.036971 TGCGCTTGTTGTTATAACCAAGTT 59.963 37.500 23.86 0.00 0.00 2.66
2814 4115 3.566322 TGCGCTTGTTGTTATAACCAAGT 59.434 39.130 23.86 0.00 0.00 3.16
2815 4116 3.911964 GTGCGCTTGTTGTTATAACCAAG 59.088 43.478 21.19 21.19 0.00 3.61
2816 4117 3.566322 AGTGCGCTTGTTGTTATAACCAA 59.434 39.130 9.73 9.56 0.00 3.67
2817 4118 3.058570 CAGTGCGCTTGTTGTTATAACCA 60.059 43.478 9.73 0.00 0.00 3.67
2818 4119 3.488489 CAGTGCGCTTGTTGTTATAACC 58.512 45.455 9.73 0.00 0.00 2.85
2819 4120 2.908626 GCAGTGCGCTTGTTGTTATAAC 59.091 45.455 9.73 8.75 37.77 1.89
2820 4121 2.550180 TGCAGTGCGCTTGTTGTTATAA 59.450 40.909 9.73 0.00 43.06 0.98
2821 4122 2.147150 TGCAGTGCGCTTGTTGTTATA 58.853 42.857 9.73 0.00 43.06 0.98
2822 4123 0.950836 TGCAGTGCGCTTGTTGTTAT 59.049 45.000 9.73 0.00 43.06 1.89
2823 4124 0.307453 CTGCAGTGCGCTTGTTGTTA 59.693 50.000 9.73 0.00 43.06 2.41
2824 4125 1.064621 CTGCAGTGCGCTTGTTGTT 59.935 52.632 9.73 0.00 43.06 2.83
2825 4126 2.114670 ACTGCAGTGCGCTTGTTGT 61.115 52.632 20.97 7.66 43.06 3.32
2826 4127 1.656263 CACTGCAGTGCGCTTGTTG 60.656 57.895 32.39 7.36 43.06 3.33
2827 4128 2.717485 CACTGCAGTGCGCTTGTT 59.283 55.556 32.39 0.00 43.06 2.83
2836 4137 1.404717 CGATCTAAGCCACACTGCAGT 60.405 52.381 15.25 15.25 0.00 4.40
2837 4138 1.284657 CGATCTAAGCCACACTGCAG 58.715 55.000 13.48 13.48 0.00 4.41
2838 4139 0.108186 CCGATCTAAGCCACACTGCA 60.108 55.000 0.00 0.00 0.00 4.41
2839 4140 0.108138 ACCGATCTAAGCCACACTGC 60.108 55.000 0.00 0.00 0.00 4.40
2840 4141 2.271800 GAACCGATCTAAGCCACACTG 58.728 52.381 0.00 0.00 0.00 3.66
2841 4142 1.207329 GGAACCGATCTAAGCCACACT 59.793 52.381 0.00 0.00 0.00 3.55
2842 4143 1.653151 GGAACCGATCTAAGCCACAC 58.347 55.000 0.00 0.00 0.00 3.82
2843 4144 0.539986 GGGAACCGATCTAAGCCACA 59.460 55.000 0.00 0.00 40.86 4.17
2844 4145 3.381370 GGGAACCGATCTAAGCCAC 57.619 57.895 0.00 0.00 40.86 5.01
2857 4158 4.096081 CAGCAAATCAATCTCAGAGGGAAC 59.904 45.833 0.00 0.00 0.00 3.62
2858 4159 4.263639 ACAGCAAATCAATCTCAGAGGGAA 60.264 41.667 0.00 0.00 0.00 3.97
2859 4160 3.265221 ACAGCAAATCAATCTCAGAGGGA 59.735 43.478 0.00 0.00 0.00 4.20
2860 4161 3.618351 ACAGCAAATCAATCTCAGAGGG 58.382 45.455 0.00 0.00 0.00 4.30
2861 4162 6.541278 TGAATACAGCAAATCAATCTCAGAGG 59.459 38.462 0.00 0.00 0.00 3.69
2862 4163 7.549615 TGAATACAGCAAATCAATCTCAGAG 57.450 36.000 0.00 0.00 0.00 3.35
2863 4164 7.926674 TTGAATACAGCAAATCAATCTCAGA 57.073 32.000 0.00 0.00 0.00 3.27
2864 4165 7.217636 CGTTTGAATACAGCAAATCAATCTCAG 59.782 37.037 0.00 0.00 37.54 3.35
2865 4166 7.022979 CGTTTGAATACAGCAAATCAATCTCA 58.977 34.615 0.00 0.00 37.54 3.27
2866 4167 7.243487 TCGTTTGAATACAGCAAATCAATCTC 58.757 34.615 0.00 0.00 37.54 2.75
2867 4168 7.144722 TCGTTTGAATACAGCAAATCAATCT 57.855 32.000 0.00 0.00 37.54 2.40
2868 4169 7.975866 ATCGTTTGAATACAGCAAATCAATC 57.024 32.000 0.00 0.00 37.54 2.67
2869 4170 7.814107 ACAATCGTTTGAATACAGCAAATCAAT 59.186 29.630 13.01 0.00 37.54 2.57
2870 4171 7.144661 ACAATCGTTTGAATACAGCAAATCAA 58.855 30.769 13.01 0.00 37.54 2.57
2871 4172 6.676950 ACAATCGTTTGAATACAGCAAATCA 58.323 32.000 13.01 0.00 37.54 2.57
2872 4173 8.575454 GTTACAATCGTTTGAATACAGCAAATC 58.425 33.333 13.01 0.00 37.54 2.17
2873 4174 7.540745 GGTTACAATCGTTTGAATACAGCAAAT 59.459 33.333 13.01 0.00 37.54 2.32
2874 4175 6.858993 GGTTACAATCGTTTGAATACAGCAAA 59.141 34.615 13.01 0.00 36.64 3.68
2875 4176 6.017026 TGGTTACAATCGTTTGAATACAGCAA 60.017 34.615 13.01 0.00 36.64 3.91
2876 4177 5.470437 TGGTTACAATCGTTTGAATACAGCA 59.530 36.000 13.01 4.94 36.64 4.41
2877 4178 5.793457 GTGGTTACAATCGTTTGAATACAGC 59.207 40.000 13.01 2.78 36.64 4.40
2878 4179 6.795114 GTGTGGTTACAATCGTTTGAATACAG 59.205 38.462 13.01 0.00 38.82 2.74
2879 4180 6.483974 AGTGTGGTTACAATCGTTTGAATACA 59.516 34.615 13.01 7.53 38.82 2.29
2880 4181 6.795114 CAGTGTGGTTACAATCGTTTGAATAC 59.205 38.462 13.01 7.22 38.82 1.89
2881 4182 6.072948 CCAGTGTGGTTACAATCGTTTGAATA 60.073 38.462 13.01 0.00 38.82 1.75
2882 4183 5.278266 CCAGTGTGGTTACAATCGTTTGAAT 60.278 40.000 13.01 0.00 38.82 2.57
2883 4184 4.035792 CCAGTGTGGTTACAATCGTTTGAA 59.964 41.667 13.01 1.02 38.82 2.69
2884 4185 3.562141 CCAGTGTGGTTACAATCGTTTGA 59.438 43.478 13.01 0.00 38.82 2.69
2885 4186 3.884169 CCAGTGTGGTTACAATCGTTTG 58.116 45.455 4.67 4.67 38.82 2.93
2898 4199 4.582701 TTTCATTGCTTAACCAGTGTGG 57.417 40.909 0.00 0.00 45.02 4.17
2899 4200 6.017400 AGATTTCATTGCTTAACCAGTGTG 57.983 37.500 0.00 0.00 0.00 3.82
2900 4201 6.006449 AGAGATTTCATTGCTTAACCAGTGT 58.994 36.000 0.00 0.00 0.00 3.55
2901 4202 6.506500 AGAGATTTCATTGCTTAACCAGTG 57.493 37.500 0.00 0.00 0.00 3.66
2902 4203 7.530426 AAAGAGATTTCATTGCTTAACCAGT 57.470 32.000 0.00 0.00 0.00 4.00
2903 4204 8.822652 AAAAAGAGATTTCATTGCTTAACCAG 57.177 30.769 0.00 0.00 0.00 4.00
3161 4464 3.226429 GAGGTGCTCAGGTCGTGCA 62.226 63.158 0.00 0.00 41.66 4.57
3307 4737 1.354368 GAACCAATGGAGGTCAGGGAA 59.646 52.381 6.16 0.00 42.25 3.97
3311 4741 1.912043 AGAGGAACCAATGGAGGTCAG 59.088 52.381 6.16 0.00 42.25 3.51
3332 4762 1.592223 GCTCACAAGAGGGCGTAGT 59.408 57.895 0.00 0.00 42.33 2.73
3370 4800 1.454663 GAGGCTTGATTGGGCTCCC 60.455 63.158 6.08 0.00 46.34 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.