Multiple sequence alignment - TraesCS3A01G532700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G532700 chr3A 100.000 3733 0 0 1 3733 745634522 745638254 0.000000e+00 6894.0
1 TraesCS3A01G532700 chr3A 88.390 267 24 6 3467 3733 745683739 745683998 7.780000e-82 315.0
2 TraesCS3A01G532700 chr3A 87.640 267 26 6 3467 3733 745701958 745702217 1.680000e-78 303.0
3 TraesCS3A01G532700 chr3A 77.181 447 50 26 3066 3470 745681696 745682132 2.920000e-51 213.0
4 TraesCS3A01G532700 chr3D 90.004 2311 115 50 1462 3733 610929852 610932085 0.000000e+00 2881.0
5 TraesCS3A01G532700 chr3D 83.175 1052 112 35 361 1392 610928806 610929812 0.000000e+00 902.0
6 TraesCS3A01G532700 chr3B 91.143 1750 80 29 1462 3159 828546824 828548550 0.000000e+00 2303.0
7 TraesCS3A01G532700 chr3B 85.472 943 65 34 485 1392 828545879 828546784 0.000000e+00 917.0
8 TraesCS3A01G532700 chr3B 85.470 585 65 14 3161 3733 828548738 828549314 3.210000e-165 592.0
9 TraesCS3A01G532700 chr3B 84.141 227 32 3 301 526 225829630 225829407 2.260000e-52 217.0
10 TraesCS3A01G532700 chr3B 84.141 227 32 3 301 526 225865830 225865607 2.260000e-52 217.0
11 TraesCS3A01G532700 chr7D 90.496 705 41 12 1846 2547 386560639 386561320 0.000000e+00 907.0
12 TraesCS3A01G532700 chr6A 86.158 419 32 14 2200 2606 7192555 7192959 2.660000e-116 429.0
13 TraesCS3A01G532700 chr6A 88.679 212 14 1 1846 2057 7192332 7192533 2.230000e-62 250.0
14 TraesCS3A01G532700 chr5D 84.615 416 35 17 2714 3124 421302932 421303323 1.630000e-103 387.0
15 TraesCS3A01G532700 chr5D 90.000 200 16 3 2931 3127 473025565 473025367 4.780000e-64 255.0
16 TraesCS3A01G532700 chr5D 83.700 227 33 3 300 524 501197586 501197810 1.050000e-50 211.0
17 TraesCS3A01G532700 chr2B 84.096 415 38 17 2714 3124 536302462 536302852 3.520000e-100 375.0
18 TraesCS3A01G532700 chr2B 83.614 415 40 17 2714 3124 536495119 536495509 7.620000e-97 364.0
19 TraesCS3A01G532700 chr2B 86.853 251 13 9 2200 2445 779221241 779221476 2.860000e-66 263.0
20 TraesCS3A01G532700 chr2B 86.036 222 18 4 1846 2057 785621310 785621528 3.750000e-55 226.0
21 TraesCS3A01G532700 chr2B 84.103 195 13 3 2200 2389 514336086 514336267 4.960000e-39 172.0
22 TraesCS3A01G532700 chr2B 82.524 206 15 2 1852 2057 514335880 514336064 1.070000e-35 161.0
23 TraesCS3A01G532700 chr7B 81.855 496 34 28 2653 3124 683258105 683258568 2.120000e-97 366.0
24 TraesCS3A01G532700 chr7B 88.000 225 14 4 1846 2060 567634433 567634212 1.720000e-63 254.0
25 TraesCS3A01G532700 chr7B 82.258 248 39 4 280 524 368147108 368146863 3.780000e-50 209.0
26 TraesCS3A01G532700 chr7B 97.436 39 0 1 2203 2241 567634190 567634153 8.650000e-07 65.8
27 TraesCS3A01G532700 chr2D 90.863 197 14 3 2931 3124 14320267 14320462 1.030000e-65 261.0
28 TraesCS3A01G532700 chr2D 90.863 197 13 4 2931 3124 72475187 72475381 3.700000e-65 259.0
29 TraesCS3A01G532700 chr2D 84.513 226 32 2 301 524 378729176 378729400 1.750000e-53 220.0
30 TraesCS3A01G532700 chr7A 88.688 221 13 4 1846 2057 138910892 138911109 3.700000e-65 259.0
31 TraesCS3A01G532700 chr7A 92.857 42 2 1 2200 2241 138911131 138911171 4.030000e-05 60.2
32 TraesCS3A01G532700 chr6B 88.000 225 14 4 1846 2060 84925036 84924815 1.720000e-63 254.0
33 TraesCS3A01G532700 chr6B 87.838 222 14 4 1846 2057 708381531 708381749 8.010000e-62 248.0
34 TraesCS3A01G532700 chr6B 93.478 46 1 2 2196 2241 84924815 84924772 2.410000e-07 67.6
35 TraesCS3A01G532700 chr6B 95.238 42 1 1 2200 2241 652624729 652624769 8.650000e-07 65.8
36 TraesCS3A01G532700 chr4B 86.147 231 31 1 293 523 565833493 565833264 8.010000e-62 248.0
37 TraesCS3A01G532700 chr1B 85.841 226 29 2 301 524 564921575 564921799 1.730000e-58 237.0
38 TraesCS3A01G532700 chr1B 82.895 228 35 3 299 526 623919007 623918784 6.320000e-48 202.0
39 TraesCS3A01G532700 chr1B 89.231 130 14 0 1467 1596 30394720 30394849 2.980000e-36 163.0
40 TraesCS3A01G532700 chr1D 84.255 235 32 3 293 524 11141113 11141345 1.350000e-54 224.0
41 TraesCS3A01G532700 chr1D 89.313 131 13 1 1467 1596 16379674 16379804 2.980000e-36 163.0
42 TraesCS3A01G532700 chr1D 95.000 40 2 0 2479 2518 290413438 290413399 3.110000e-06 63.9
43 TraesCS3A01G532700 chr1A 89.683 126 13 0 1471 1596 16933738 16933613 1.070000e-35 161.0
44 TraesCS3A01G532700 chr1A 95.745 47 2 0 2472 2518 45253066 45253020 4.000000e-10 76.8
45 TraesCS3A01G532700 chr5A 90.566 53 5 0 2717 2769 598660938 598660990 1.860000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G532700 chr3A 745634522 745638254 3732 False 6894.000000 6894 100.000000 1 3733 1 chr3A.!!$F1 3732
1 TraesCS3A01G532700 chr3A 745681696 745683998 2302 False 264.000000 315 82.785500 3066 3733 2 chr3A.!!$F3 667
2 TraesCS3A01G532700 chr3D 610928806 610932085 3279 False 1891.500000 2881 86.589500 361 3733 2 chr3D.!!$F1 3372
3 TraesCS3A01G532700 chr3B 828545879 828549314 3435 False 1270.666667 2303 87.361667 485 3733 3 chr3B.!!$F1 3248
4 TraesCS3A01G532700 chr7D 386560639 386561320 681 False 907.000000 907 90.496000 1846 2547 1 chr7D.!!$F1 701
5 TraesCS3A01G532700 chr6A 7192332 7192959 627 False 339.500000 429 87.418500 1846 2606 2 chr6A.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 878 0.178975 AAAATGGCGTCCAAGTGGGA 60.179 50.0 2.68 0.0 45.89 4.37 F
2567 2655 0.235926 GCCTTGACGACAGCAGAAAC 59.764 55.0 0.00 0.0 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2658 0.037139 CTGCTCTGCTCTGTTCAGCT 60.037 55.0 0.00 0.00 40.39 4.24 R
3639 5654 0.608856 ATGTGGAAATGCACGCTCCA 60.609 50.0 8.76 8.76 36.89 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.751431 AGTAGTCCCGGCTACGTT 57.249 55.556 12.02 0.00 44.33 3.99
18 19 2.486796 AGTAGTCCCGGCTACGTTC 58.513 57.895 12.02 2.77 44.33 3.95
19 20 0.322816 AGTAGTCCCGGCTACGTTCA 60.323 55.000 12.02 0.00 44.33 3.18
20 21 0.527565 GTAGTCCCGGCTACGTTCAA 59.472 55.000 0.00 0.00 38.78 2.69
21 22 0.527565 TAGTCCCGGCTACGTTCAAC 59.472 55.000 0.00 0.00 38.78 3.18
22 23 1.739196 GTCCCGGCTACGTTCAACC 60.739 63.158 0.00 0.00 38.78 3.77
23 24 2.208619 TCCCGGCTACGTTCAACCA 61.209 57.895 0.00 0.00 38.78 3.67
24 25 1.740296 CCCGGCTACGTTCAACCAG 60.740 63.158 0.00 0.00 38.78 4.00
25 26 1.005394 CCGGCTACGTTCAACCAGT 60.005 57.895 0.00 0.00 38.78 4.00
26 27 0.601841 CCGGCTACGTTCAACCAGTT 60.602 55.000 0.00 0.00 38.78 3.16
27 28 1.223187 CGGCTACGTTCAACCAGTTT 58.777 50.000 0.00 0.00 34.81 2.66
28 29 1.070175 CGGCTACGTTCAACCAGTTTG 60.070 52.381 0.00 0.00 34.10 2.93
29 30 1.265905 GGCTACGTTCAACCAGTTTGG 59.734 52.381 0.00 0.00 45.02 3.28
30 31 2.215196 GCTACGTTCAACCAGTTTGGA 58.785 47.619 0.00 0.00 40.96 3.53
31 32 2.812011 GCTACGTTCAACCAGTTTGGAT 59.188 45.455 0.00 0.00 40.96 3.41
32 33 3.364964 GCTACGTTCAACCAGTTTGGATG 60.365 47.826 0.00 0.30 40.96 3.51
33 34 1.953686 ACGTTCAACCAGTTTGGATGG 59.046 47.619 1.40 0.00 40.31 3.51
38 39 4.517663 CCAGTTTGGATGGTGCCA 57.482 55.556 0.00 0.00 40.96 4.92
39 40 2.744062 CCAGTTTGGATGGTGCCAA 58.256 52.632 0.00 0.00 45.77 4.52
40 41 0.318120 CCAGTTTGGATGGTGCCAAC 59.682 55.000 0.00 0.00 46.99 3.77
41 42 1.039068 CAGTTTGGATGGTGCCAACA 58.961 50.000 0.00 0.00 46.99 3.33
42 43 1.411977 CAGTTTGGATGGTGCCAACAA 59.588 47.619 0.00 7.36 46.99 2.83
43 44 2.037511 CAGTTTGGATGGTGCCAACAAT 59.962 45.455 10.88 0.00 46.99 2.71
44 45 3.257873 CAGTTTGGATGGTGCCAACAATA 59.742 43.478 10.88 3.02 46.99 1.90
45 46 3.900601 AGTTTGGATGGTGCCAACAATAA 59.099 39.130 10.88 0.00 46.99 1.40
46 47 4.021192 AGTTTGGATGGTGCCAACAATAAG 60.021 41.667 10.88 0.00 46.99 1.73
47 48 3.448093 TGGATGGTGCCAACAATAAGA 57.552 42.857 0.00 0.00 34.31 2.10
48 49 3.979911 TGGATGGTGCCAACAATAAGAT 58.020 40.909 0.00 0.00 34.31 2.40
49 50 4.352009 TGGATGGTGCCAACAATAAGATT 58.648 39.130 0.00 0.00 34.31 2.40
50 51 4.160065 TGGATGGTGCCAACAATAAGATTG 59.840 41.667 0.00 0.00 34.31 2.67
51 52 3.591196 TGGTGCCAACAATAAGATTGC 57.409 42.857 0.00 0.00 0.00 3.56
52 53 3.164268 TGGTGCCAACAATAAGATTGCT 58.836 40.909 0.00 0.00 0.00 3.91
53 54 3.056678 TGGTGCCAACAATAAGATTGCTG 60.057 43.478 0.00 0.00 0.00 4.41
54 55 3.056607 GGTGCCAACAATAAGATTGCTGT 60.057 43.478 0.00 0.00 0.00 4.40
55 56 4.559153 GTGCCAACAATAAGATTGCTGTT 58.441 39.130 0.00 0.00 32.31 3.16
56 57 4.990426 GTGCCAACAATAAGATTGCTGTTT 59.010 37.500 0.00 0.00 29.70 2.83
57 58 6.155827 GTGCCAACAATAAGATTGCTGTTTA 58.844 36.000 0.00 0.00 29.70 2.01
58 59 6.308766 GTGCCAACAATAAGATTGCTGTTTAG 59.691 38.462 0.00 0.00 29.70 1.85
59 60 5.807011 GCCAACAATAAGATTGCTGTTTAGG 59.193 40.000 0.00 0.00 29.70 2.69
60 61 5.807011 CCAACAATAAGATTGCTGTTTAGGC 59.193 40.000 0.00 0.00 29.70 3.93
61 62 6.389091 CAACAATAAGATTGCTGTTTAGGCA 58.611 36.000 0.00 0.00 37.97 4.75
62 63 6.780457 ACAATAAGATTGCTGTTTAGGCAT 57.220 33.333 0.00 0.00 39.54 4.40
63 64 7.174107 ACAATAAGATTGCTGTTTAGGCATT 57.826 32.000 0.00 0.00 39.54 3.56
64 65 7.037438 ACAATAAGATTGCTGTTTAGGCATTG 58.963 34.615 0.00 0.00 39.54 2.82
65 66 6.780457 ATAAGATTGCTGTTTAGGCATTGT 57.220 33.333 0.00 0.00 39.54 2.71
66 67 7.880160 ATAAGATTGCTGTTTAGGCATTGTA 57.120 32.000 0.00 0.00 39.54 2.41
67 68 6.780457 AAGATTGCTGTTTAGGCATTGTAT 57.220 33.333 0.00 0.00 39.54 2.29
68 69 6.382869 AGATTGCTGTTTAGGCATTGTATC 57.617 37.500 0.00 0.00 39.54 2.24
69 70 5.887598 AGATTGCTGTTTAGGCATTGTATCA 59.112 36.000 0.00 0.00 39.54 2.15
70 71 6.548622 AGATTGCTGTTTAGGCATTGTATCAT 59.451 34.615 0.00 0.00 39.54 2.45
71 72 7.720957 AGATTGCTGTTTAGGCATTGTATCATA 59.279 33.333 0.00 0.00 39.54 2.15
72 73 7.822161 TTGCTGTTTAGGCATTGTATCATAT 57.178 32.000 0.00 0.00 39.54 1.78
73 74 7.822161 TGCTGTTTAGGCATTGTATCATATT 57.178 32.000 0.00 0.00 34.56 1.28
74 75 8.236585 TGCTGTTTAGGCATTGTATCATATTT 57.763 30.769 0.00 0.00 34.56 1.40
75 76 8.694540 TGCTGTTTAGGCATTGTATCATATTTT 58.305 29.630 0.00 0.00 34.56 1.82
76 77 9.533253 GCTGTTTAGGCATTGTATCATATTTTT 57.467 29.630 0.00 0.00 0.00 1.94
93 94 3.810310 TTTTTCCTTGTTGTGGCGATT 57.190 38.095 0.00 0.00 0.00 3.34
94 95 3.810310 TTTTCCTTGTTGTGGCGATTT 57.190 38.095 0.00 0.00 0.00 2.17
95 96 4.920640 TTTTCCTTGTTGTGGCGATTTA 57.079 36.364 0.00 0.00 0.00 1.40
96 97 3.907894 TTCCTTGTTGTGGCGATTTAC 57.092 42.857 0.00 0.00 0.00 2.01
97 98 3.134574 TCCTTGTTGTGGCGATTTACT 57.865 42.857 0.00 0.00 0.00 2.24
98 99 3.482436 TCCTTGTTGTGGCGATTTACTT 58.518 40.909 0.00 0.00 0.00 2.24
99 100 3.886505 TCCTTGTTGTGGCGATTTACTTT 59.113 39.130 0.00 0.00 0.00 2.66
100 101 4.339814 TCCTTGTTGTGGCGATTTACTTTT 59.660 37.500 0.00 0.00 0.00 2.27
101 102 5.047188 CCTTGTTGTGGCGATTTACTTTTT 58.953 37.500 0.00 0.00 0.00 1.94
102 103 5.174943 CCTTGTTGTGGCGATTTACTTTTTC 59.825 40.000 0.00 0.00 0.00 2.29
103 104 4.612943 TGTTGTGGCGATTTACTTTTTCC 58.387 39.130 0.00 0.00 0.00 3.13
104 105 3.926821 TGTGGCGATTTACTTTTTCCC 57.073 42.857 0.00 0.00 0.00 3.97
105 106 3.492337 TGTGGCGATTTACTTTTTCCCT 58.508 40.909 0.00 0.00 0.00 4.20
106 107 3.254657 TGTGGCGATTTACTTTTTCCCTG 59.745 43.478 0.00 0.00 0.00 4.45
107 108 3.254903 GTGGCGATTTACTTTTTCCCTGT 59.745 43.478 0.00 0.00 0.00 4.00
108 109 3.892588 TGGCGATTTACTTTTTCCCTGTT 59.107 39.130 0.00 0.00 0.00 3.16
109 110 4.234574 GGCGATTTACTTTTTCCCTGTTG 58.765 43.478 0.00 0.00 0.00 3.33
110 111 3.673338 GCGATTTACTTTTTCCCTGTTGC 59.327 43.478 0.00 0.00 0.00 4.17
111 112 3.911964 CGATTTACTTTTTCCCTGTTGCG 59.088 43.478 0.00 0.00 0.00 4.85
112 113 4.555906 CGATTTACTTTTTCCCTGTTGCGT 60.556 41.667 0.00 0.00 0.00 5.24
113 114 3.974871 TTACTTTTTCCCTGTTGCGTC 57.025 42.857 0.00 0.00 0.00 5.19
114 115 2.052782 ACTTTTTCCCTGTTGCGTCT 57.947 45.000 0.00 0.00 0.00 4.18
115 116 1.676006 ACTTTTTCCCTGTTGCGTCTG 59.324 47.619 0.00 0.00 0.00 3.51
116 117 1.676006 CTTTTTCCCTGTTGCGTCTGT 59.324 47.619 0.00 0.00 0.00 3.41
117 118 1.757682 TTTTCCCTGTTGCGTCTGTT 58.242 45.000 0.00 0.00 0.00 3.16
118 119 1.757682 TTTCCCTGTTGCGTCTGTTT 58.242 45.000 0.00 0.00 0.00 2.83
119 120 1.021202 TTCCCTGTTGCGTCTGTTTG 58.979 50.000 0.00 0.00 0.00 2.93
120 121 0.817634 TCCCTGTTGCGTCTGTTTGG 60.818 55.000 0.00 0.00 0.00 3.28
121 122 1.654220 CCTGTTGCGTCTGTTTGGG 59.346 57.895 0.00 0.00 0.00 4.12
122 123 1.008538 CTGTTGCGTCTGTTTGGGC 60.009 57.895 0.00 0.00 0.00 5.36
123 124 1.723608 CTGTTGCGTCTGTTTGGGCA 61.724 55.000 0.00 0.00 0.00 5.36
124 125 1.299089 GTTGCGTCTGTTTGGGCAC 60.299 57.895 0.00 0.00 34.72 5.01
125 126 1.453015 TTGCGTCTGTTTGGGCACT 60.453 52.632 0.00 0.00 34.72 4.40
126 127 1.034838 TTGCGTCTGTTTGGGCACTT 61.035 50.000 0.00 0.00 34.72 3.16
127 128 1.008538 GCGTCTGTTTGGGCACTTG 60.009 57.895 0.00 0.00 0.00 3.16
128 129 1.444119 GCGTCTGTTTGGGCACTTGA 61.444 55.000 0.00 0.00 0.00 3.02
129 130 0.588252 CGTCTGTTTGGGCACTTGAG 59.412 55.000 0.00 0.00 0.00 3.02
130 131 1.810031 CGTCTGTTTGGGCACTTGAGA 60.810 52.381 0.00 0.00 0.00 3.27
131 132 2.508526 GTCTGTTTGGGCACTTGAGAT 58.491 47.619 0.00 0.00 0.00 2.75
132 133 2.227388 GTCTGTTTGGGCACTTGAGATG 59.773 50.000 0.00 0.00 0.00 2.90
133 134 2.106338 TCTGTTTGGGCACTTGAGATGA 59.894 45.455 0.00 0.00 0.00 2.92
134 135 2.486982 CTGTTTGGGCACTTGAGATGAG 59.513 50.000 0.00 0.00 0.00 2.90
135 136 2.106338 TGTTTGGGCACTTGAGATGAGA 59.894 45.455 0.00 0.00 0.00 3.27
136 137 2.479566 TTGGGCACTTGAGATGAGAC 57.520 50.000 0.00 0.00 0.00 3.36
137 138 1.649321 TGGGCACTTGAGATGAGACT 58.351 50.000 0.00 0.00 0.00 3.24
138 139 1.552337 TGGGCACTTGAGATGAGACTC 59.448 52.381 0.00 0.00 37.42 3.36
139 140 1.552337 GGGCACTTGAGATGAGACTCA 59.448 52.381 7.80 7.80 43.83 3.41
140 141 2.418471 GGGCACTTGAGATGAGACTCAG 60.418 54.545 11.52 0.00 45.63 3.35
141 142 2.233431 GGCACTTGAGATGAGACTCAGT 59.767 50.000 11.52 0.30 45.63 3.41
142 143 3.306641 GGCACTTGAGATGAGACTCAGTT 60.307 47.826 11.52 1.19 45.63 3.16
143 144 4.314121 GCACTTGAGATGAGACTCAGTTT 58.686 43.478 11.52 0.00 45.63 2.66
144 145 4.152045 GCACTTGAGATGAGACTCAGTTTG 59.848 45.833 11.52 2.65 45.63 2.93
145 146 4.689812 CACTTGAGATGAGACTCAGTTTGG 59.310 45.833 11.52 2.54 45.63 3.28
146 147 4.590647 ACTTGAGATGAGACTCAGTTTGGA 59.409 41.667 11.52 0.00 45.63 3.53
147 148 5.248020 ACTTGAGATGAGACTCAGTTTGGAT 59.752 40.000 11.52 0.00 45.63 3.41
148 149 6.438741 ACTTGAGATGAGACTCAGTTTGGATA 59.561 38.462 11.52 0.00 45.63 2.59
149 150 6.857437 TGAGATGAGACTCAGTTTGGATAA 57.143 37.500 11.52 0.00 41.21 1.75
150 151 7.429374 TGAGATGAGACTCAGTTTGGATAAT 57.571 36.000 11.52 0.00 41.21 1.28
151 152 8.539117 TGAGATGAGACTCAGTTTGGATAATA 57.461 34.615 11.52 0.00 41.21 0.98
152 153 8.417106 TGAGATGAGACTCAGTTTGGATAATAC 58.583 37.037 11.52 0.00 41.21 1.89
153 154 7.429633 AGATGAGACTCAGTTTGGATAATACG 58.570 38.462 11.52 0.00 0.00 3.06
154 155 6.525578 TGAGACTCAGTTTGGATAATACGT 57.474 37.500 0.00 0.00 0.00 3.57
155 156 6.931838 TGAGACTCAGTTTGGATAATACGTT 58.068 36.000 0.00 0.00 0.00 3.99
156 157 7.383687 TGAGACTCAGTTTGGATAATACGTTT 58.616 34.615 0.00 0.00 0.00 3.60
157 158 7.330946 TGAGACTCAGTTTGGATAATACGTTTG 59.669 37.037 0.00 0.00 0.00 2.93
158 159 6.092259 AGACTCAGTTTGGATAATACGTTTGC 59.908 38.462 0.00 0.00 0.00 3.68
159 160 5.938125 ACTCAGTTTGGATAATACGTTTGCT 59.062 36.000 0.00 0.00 0.00 3.91
160 161 6.430000 ACTCAGTTTGGATAATACGTTTGCTT 59.570 34.615 0.00 0.00 0.00 3.91
161 162 6.607689 TCAGTTTGGATAATACGTTTGCTTG 58.392 36.000 0.00 0.00 0.00 4.01
162 163 6.428465 TCAGTTTGGATAATACGTTTGCTTGA 59.572 34.615 0.00 0.00 0.00 3.02
163 164 7.041030 TCAGTTTGGATAATACGTTTGCTTGAA 60.041 33.333 0.00 0.00 0.00 2.69
164 165 7.754924 CAGTTTGGATAATACGTTTGCTTGAAT 59.245 33.333 0.00 0.00 0.00 2.57
165 166 8.952278 AGTTTGGATAATACGTTTGCTTGAATA 58.048 29.630 0.00 0.00 0.00 1.75
166 167 9.562583 GTTTGGATAATACGTTTGCTTGAATAA 57.437 29.630 0.00 0.00 0.00 1.40
169 170 9.729023 TGGATAATACGTTTGCTTGAATAAATG 57.271 29.630 0.00 0.00 0.00 2.32
170 171 9.180678 GGATAATACGTTTGCTTGAATAAATGG 57.819 33.333 0.00 0.00 0.00 3.16
171 172 9.730420 GATAATACGTTTGCTTGAATAAATGGT 57.270 29.630 0.00 0.00 0.00 3.55
173 174 7.810766 ATACGTTTGCTTGAATAAATGGTTG 57.189 32.000 0.00 0.00 0.00 3.77
174 175 5.596845 ACGTTTGCTTGAATAAATGGTTGT 58.403 33.333 0.00 0.00 0.00 3.32
175 176 5.461737 ACGTTTGCTTGAATAAATGGTTGTG 59.538 36.000 0.00 0.00 0.00 3.33
176 177 5.461737 CGTTTGCTTGAATAAATGGTTGTGT 59.538 36.000 0.00 0.00 0.00 3.72
177 178 6.561902 CGTTTGCTTGAATAAATGGTTGTGTG 60.562 38.462 0.00 0.00 0.00 3.82
178 179 4.305769 TGCTTGAATAAATGGTTGTGTGC 58.694 39.130 0.00 0.00 0.00 4.57
179 180 4.202192 TGCTTGAATAAATGGTTGTGTGCA 60.202 37.500 0.00 0.00 0.00 4.57
180 181 4.931002 GCTTGAATAAATGGTTGTGTGCAT 59.069 37.500 0.00 0.00 0.00 3.96
181 182 5.062558 GCTTGAATAAATGGTTGTGTGCATC 59.937 40.000 0.00 0.00 0.00 3.91
182 183 4.731720 TGAATAAATGGTTGTGTGCATCG 58.268 39.130 0.00 0.00 0.00 3.84
183 184 4.217334 TGAATAAATGGTTGTGTGCATCGT 59.783 37.500 0.00 0.00 0.00 3.73
184 185 4.782019 ATAAATGGTTGTGTGCATCGTT 57.218 36.364 0.00 0.00 0.00 3.85
185 186 3.451141 AAATGGTTGTGTGCATCGTTT 57.549 38.095 0.00 0.00 0.00 3.60
186 187 2.420628 ATGGTTGTGTGCATCGTTTG 57.579 45.000 0.00 0.00 0.00 2.93
187 188 1.098869 TGGTTGTGTGCATCGTTTGT 58.901 45.000 0.00 0.00 0.00 2.83
188 189 1.202234 TGGTTGTGTGCATCGTTTGTG 60.202 47.619 0.00 0.00 0.00 3.33
189 190 0.845768 GTTGTGTGCATCGTTTGTGC 59.154 50.000 0.00 0.00 42.81 4.57
196 197 1.737236 TGCATCGTTTGTGCAGATACC 59.263 47.619 0.00 0.00 46.76 2.73
197 198 1.267532 GCATCGTTTGTGCAGATACCG 60.268 52.381 0.00 0.00 42.08 4.02
198 199 1.327460 CATCGTTTGTGCAGATACCGG 59.673 52.381 0.00 0.00 0.00 5.28
199 200 0.390603 TCGTTTGTGCAGATACCGGG 60.391 55.000 6.32 0.00 0.00 5.73
200 201 1.366111 CGTTTGTGCAGATACCGGGG 61.366 60.000 6.32 0.00 0.00 5.73
201 202 1.029947 GTTTGTGCAGATACCGGGGG 61.030 60.000 6.32 0.00 0.00 5.40
202 203 1.493854 TTTGTGCAGATACCGGGGGT 61.494 55.000 6.32 0.00 40.16 4.95
203 204 0.618107 TTGTGCAGATACCGGGGGTA 60.618 55.000 6.32 0.00 42.80 3.69
211 212 2.500269 ATACCGGGGGTATTCTTCCA 57.500 50.000 6.32 0.00 45.54 3.53
212 213 2.500269 TACCGGGGGTATTCTTCCAT 57.500 50.000 6.32 0.00 37.09 3.41
213 214 1.603634 ACCGGGGGTATTCTTCCATT 58.396 50.000 6.32 0.00 32.11 3.16
214 215 1.493446 ACCGGGGGTATTCTTCCATTC 59.507 52.381 6.32 0.00 32.11 2.67
215 216 1.202891 CCGGGGGTATTCTTCCATTCC 60.203 57.143 0.00 0.00 0.00 3.01
216 217 1.542547 CGGGGGTATTCTTCCATTCCG 60.543 57.143 0.00 0.00 0.00 4.30
217 218 1.772453 GGGGGTATTCTTCCATTCCGA 59.228 52.381 0.00 0.00 0.00 4.55
218 219 2.173996 GGGGGTATTCTTCCATTCCGAA 59.826 50.000 0.00 0.00 0.00 4.30
219 220 3.477530 GGGGTATTCTTCCATTCCGAAG 58.522 50.000 0.00 0.00 40.59 3.79
220 221 3.135895 GGGGTATTCTTCCATTCCGAAGA 59.864 47.826 0.00 0.00 45.07 2.87
228 229 6.072112 TCTTCCATTCCGAAGAACAAAAAG 57.928 37.500 0.00 0.00 44.07 2.27
229 230 5.825679 TCTTCCATTCCGAAGAACAAAAAGA 59.174 36.000 0.00 0.00 44.07 2.52
230 231 6.320164 TCTTCCATTCCGAAGAACAAAAAGAA 59.680 34.615 0.00 0.00 44.07 2.52
231 232 6.072112 TCCATTCCGAAGAACAAAAAGAAG 57.928 37.500 0.00 0.00 33.97 2.85
232 233 5.825679 TCCATTCCGAAGAACAAAAAGAAGA 59.174 36.000 0.00 0.00 33.97 2.87
233 234 6.320164 TCCATTCCGAAGAACAAAAAGAAGAA 59.680 34.615 0.00 0.00 33.97 2.52
234 235 6.638468 CCATTCCGAAGAACAAAAAGAAGAAG 59.362 38.462 0.00 0.00 33.97 2.85
235 236 6.995511 TTCCGAAGAACAAAAAGAAGAAGA 57.004 33.333 0.00 0.00 0.00 2.87
236 237 6.995511 TCCGAAGAACAAAAAGAAGAAGAA 57.004 33.333 0.00 0.00 0.00 2.52
237 238 7.385778 TCCGAAGAACAAAAAGAAGAAGAAA 57.614 32.000 0.00 0.00 0.00 2.52
238 239 7.822658 TCCGAAGAACAAAAAGAAGAAGAAAA 58.177 30.769 0.00 0.00 0.00 2.29
239 240 8.301002 TCCGAAGAACAAAAAGAAGAAGAAAAA 58.699 29.630 0.00 0.00 0.00 1.94
240 241 8.587111 CCGAAGAACAAAAAGAAGAAGAAAAAG 58.413 33.333 0.00 0.00 0.00 2.27
241 242 9.341899 CGAAGAACAAAAAGAAGAAGAAAAAGA 57.658 29.630 0.00 0.00 0.00 2.52
247 248 9.725019 ACAAAAAGAAGAAGAAAAAGAAATGGT 57.275 25.926 0.00 0.00 0.00 3.55
281 282 7.798710 TGGTACAAATGGAATAATTCCCAAA 57.201 32.000 0.00 0.00 42.79 3.28
282 283 7.846066 TGGTACAAATGGAATAATTCCCAAAG 58.154 34.615 0.00 0.00 42.79 2.77
283 284 7.456269 TGGTACAAATGGAATAATTCCCAAAGT 59.544 33.333 0.00 2.87 42.79 2.66
296 297 9.951866 ATAATTCCCAAAGTAACATAATTCCCT 57.048 29.630 0.00 0.00 0.00 4.20
297 298 8.679344 AATTCCCAAAGTAACATAATTCCCTT 57.321 30.769 0.00 0.00 0.00 3.95
298 299 8.679344 ATTCCCAAAGTAACATAATTCCCTTT 57.321 30.769 0.00 0.00 0.00 3.11
299 300 9.777008 ATTCCCAAAGTAACATAATTCCCTTTA 57.223 29.630 0.00 0.00 0.00 1.85
300 301 9.777008 TTCCCAAAGTAACATAATTCCCTTTAT 57.223 29.630 0.00 0.00 0.00 1.40
301 302 9.416284 TCCCAAAGTAACATAATTCCCTTTATC 57.584 33.333 0.00 0.00 0.00 1.75
302 303 8.638873 CCCAAAGTAACATAATTCCCTTTATCC 58.361 37.037 0.00 0.00 0.00 2.59
303 304 9.196139 CCAAAGTAACATAATTCCCTTTATCCA 57.804 33.333 0.00 0.00 0.00 3.41
315 316 7.691993 TTCCCTTTATCCATATATCTAGGGC 57.308 40.000 0.00 0.00 40.71 5.19
316 317 6.151049 TCCCTTTATCCATATATCTAGGGCC 58.849 44.000 0.00 0.00 40.71 5.80
317 318 6.066994 TCCCTTTATCCATATATCTAGGGCCT 60.067 42.308 12.58 12.58 40.71 5.19
318 319 7.133606 TCCCTTTATCCATATATCTAGGGCCTA 59.866 40.741 13.73 13.73 40.71 3.93
319 320 7.794683 CCCTTTATCCATATATCTAGGGCCTAA 59.205 40.741 15.43 6.32 35.11 2.69
320 321 9.398921 CCTTTATCCATATATCTAGGGCCTAAT 57.601 37.037 15.43 12.93 0.00 1.73
322 323 9.744125 TTTATCCATATATCTAGGGCCTAATGT 57.256 33.333 15.43 11.37 0.00 2.71
325 326 9.920230 ATCCATATATCTAGGGCCTAATGTATT 57.080 33.333 15.43 0.58 0.00 1.89
326 327 9.744125 TCCATATATCTAGGGCCTAATGTATTT 57.256 33.333 15.43 5.85 0.00 1.40
331 332 6.488769 TCTAGGGCCTAATGTATTTTTCGA 57.511 37.500 15.43 0.62 0.00 3.71
332 333 7.074653 TCTAGGGCCTAATGTATTTTTCGAT 57.925 36.000 15.43 0.00 0.00 3.59
333 334 6.934645 TCTAGGGCCTAATGTATTTTTCGATG 59.065 38.462 15.43 0.00 0.00 3.84
334 335 4.278419 AGGGCCTAATGTATTTTTCGATGC 59.722 41.667 2.82 0.00 0.00 3.91
335 336 4.037446 GGGCCTAATGTATTTTTCGATGCA 59.963 41.667 0.84 0.00 0.00 3.96
336 337 5.451242 GGGCCTAATGTATTTTTCGATGCAA 60.451 40.000 0.84 0.00 0.00 4.08
337 338 6.039616 GGCCTAATGTATTTTTCGATGCAAA 58.960 36.000 0.00 0.00 0.00 3.68
338 339 6.701400 GGCCTAATGTATTTTTCGATGCAAAT 59.299 34.615 0.00 0.00 0.00 2.32
339 340 7.224557 GGCCTAATGTATTTTTCGATGCAAATT 59.775 33.333 0.00 0.00 0.00 1.82
340 341 8.603181 GCCTAATGTATTTTTCGATGCAAATTT 58.397 29.630 0.00 0.00 0.00 1.82
344 345 9.810231 AATGTATTTTTCGATGCAAATTTTGAC 57.190 25.926 13.26 5.18 0.00 3.18
345 346 7.791949 TGTATTTTTCGATGCAAATTTTGACC 58.208 30.769 13.26 0.00 0.00 4.02
346 347 6.857777 ATTTTTCGATGCAAATTTTGACCA 57.142 29.167 13.26 2.90 0.00 4.02
347 348 5.649602 TTTTCGATGCAAATTTTGACCAC 57.350 34.783 13.26 0.00 0.00 4.16
348 349 3.998099 TCGATGCAAATTTTGACCACA 57.002 38.095 13.26 1.86 0.00 4.17
349 350 4.517952 TCGATGCAAATTTTGACCACAT 57.482 36.364 13.26 6.51 0.00 3.21
350 351 4.236147 TCGATGCAAATTTTGACCACATG 58.764 39.130 13.26 0.00 0.00 3.21
351 352 3.989167 CGATGCAAATTTTGACCACATGT 59.011 39.130 13.26 0.00 0.00 3.21
352 353 4.090354 CGATGCAAATTTTGACCACATGTC 59.910 41.667 13.26 0.00 44.72 3.06
371 372 7.061557 CACATGTCAGAGCAATAGTATATGACG 59.938 40.741 0.00 0.00 38.68 4.35
381 382 7.382488 AGCAATAGTATATGACGTGCAAGTTAG 59.618 37.037 6.76 0.00 37.55 2.34
390 391 2.878406 ACGTGCAAGTTAGACAAAGCAT 59.122 40.909 0.00 0.00 34.24 3.79
391 392 4.062293 ACGTGCAAGTTAGACAAAGCATA 58.938 39.130 0.00 0.00 34.24 3.14
392 393 4.084013 ACGTGCAAGTTAGACAAAGCATAC 60.084 41.667 0.00 0.00 34.24 2.39
393 394 4.084066 CGTGCAAGTTAGACAAAGCATACA 60.084 41.667 0.00 0.00 34.24 2.29
394 395 5.559991 CGTGCAAGTTAGACAAAGCATACAA 60.560 40.000 0.00 0.00 34.24 2.41
507 508 3.518634 TTCGAAAAATGCATTAGGCCC 57.481 42.857 13.39 0.17 43.89 5.80
527 529 5.373854 GGCCCTATATATGGATGGAGGAATT 59.626 44.000 8.15 0.00 0.00 2.17
528 530 6.126068 GGCCCTATATATGGATGGAGGAATTT 60.126 42.308 8.15 0.00 0.00 1.82
529 531 7.357471 GCCCTATATATGGATGGAGGAATTTT 58.643 38.462 8.15 0.00 0.00 1.82
597 599 8.713737 AATTAAAGTTAGTGGGAATCGACTAC 57.286 34.615 0.00 0.00 34.64 2.73
599 601 8.579850 TTAAAGTTAGTGGGAATCGACTACTA 57.420 34.615 0.00 0.00 34.64 1.82
600 602 7.657023 AAAGTTAGTGGGAATCGACTACTAT 57.343 36.000 0.00 0.00 34.64 2.12
601 603 7.657023 AAGTTAGTGGGAATCGACTACTATT 57.343 36.000 0.00 0.00 34.64 1.73
602 604 7.274603 AGTTAGTGGGAATCGACTACTATTC 57.725 40.000 0.00 0.00 34.64 1.75
603 605 6.832384 AGTTAGTGGGAATCGACTACTATTCA 59.168 38.462 0.00 0.00 34.64 2.57
604 606 7.506261 AGTTAGTGGGAATCGACTACTATTCAT 59.494 37.037 0.00 0.00 34.64 2.57
605 607 6.090483 AGTGGGAATCGACTACTATTCATG 57.910 41.667 0.00 0.00 34.44 3.07
606 608 5.598830 AGTGGGAATCGACTACTATTCATGT 59.401 40.000 0.00 0.00 34.44 3.21
607 609 6.776116 AGTGGGAATCGACTACTATTCATGTA 59.224 38.462 0.00 0.00 34.44 2.29
608 610 6.862090 GTGGGAATCGACTACTATTCATGTAC 59.138 42.308 0.00 0.00 34.44 2.90
609 611 6.548251 TGGGAATCGACTACTATTCATGTACA 59.452 38.462 0.00 0.00 34.44 2.90
610 612 6.862090 GGGAATCGACTACTATTCATGTACAC 59.138 42.308 0.00 0.00 34.44 2.90
611 613 7.423199 GGAATCGACTACTATTCATGTACACA 58.577 38.462 0.00 0.00 34.44 3.72
612 614 8.082852 GGAATCGACTACTATTCATGTACACAT 58.917 37.037 0.00 0.00 34.44 3.21
621 623 8.410673 ACTATTCATGTACACATAGGAGTAGG 57.589 38.462 17.07 0.09 34.26 3.18
628 630 8.638873 CATGTACACATAGGAGTAGGAATTACA 58.361 37.037 0.00 0.00 34.26 2.41
650 652 9.877178 TTACACAATCAAGGTTGTTATTTTGTT 57.123 25.926 0.00 0.00 40.17 2.83
651 653 8.785329 ACACAATCAAGGTTGTTATTTTGTTT 57.215 26.923 0.00 0.00 40.17 2.83
652 654 8.878769 ACACAATCAAGGTTGTTATTTTGTTTC 58.121 29.630 0.00 0.00 40.17 2.78
653 655 8.334632 CACAATCAAGGTTGTTATTTTGTTTCC 58.665 33.333 0.00 0.00 40.17 3.13
655 657 8.887717 CAATCAAGGTTGTTATTTTGTTTCCAA 58.112 29.630 0.00 0.00 0.00 3.53
656 658 9.625747 AATCAAGGTTGTTATTTTGTTTCCAAT 57.374 25.926 0.00 0.00 0.00 3.16
657 659 8.655651 TCAAGGTTGTTATTTTGTTTCCAATC 57.344 30.769 0.00 0.00 0.00 2.67
670 674 8.877864 TTTGTTTCCAATCATAAGTACTCCAT 57.122 30.769 0.00 0.00 0.00 3.41
689 693 7.618137 ACTCCATATTTACACGTTTAGTTCCT 58.382 34.615 0.00 0.00 0.00 3.36
734 740 3.056821 GGAACCACTACCATTGAAAAGGC 60.057 47.826 0.00 0.00 0.00 4.35
749 755 5.013547 TGAAAAGGCGATAAAATGGGAGAA 58.986 37.500 0.00 0.00 0.00 2.87
753 759 5.520376 AGGCGATAAAATGGGAGAAATTG 57.480 39.130 0.00 0.00 0.00 2.32
787 794 3.881089 GCTGTCCATGTCATCATCATCAA 59.119 43.478 0.00 0.00 31.15 2.57
805 815 7.736447 TCATCAACAAAAACAAAACCAAACT 57.264 28.000 0.00 0.00 0.00 2.66
823 833 6.071051 ACCAAACTGTAGAAAAGGCAAAGAAA 60.071 34.615 0.00 0.00 0.00 2.52
853 863 7.862274 ATCAAGGGAGAAAAGAAAGGAAAAT 57.138 32.000 0.00 0.00 0.00 1.82
854 864 7.054491 TCAAGGGAGAAAAGAAAGGAAAATG 57.946 36.000 0.00 0.00 0.00 2.32
855 865 6.041979 TCAAGGGAGAAAAGAAAGGAAAATGG 59.958 38.462 0.00 0.00 0.00 3.16
856 866 4.284490 AGGGAGAAAAGAAAGGAAAATGGC 59.716 41.667 0.00 0.00 0.00 4.40
857 867 4.237724 GGAGAAAAGAAAGGAAAATGGCG 58.762 43.478 0.00 0.00 0.00 5.69
858 868 4.262036 GGAGAAAAGAAAGGAAAATGGCGT 60.262 41.667 0.00 0.00 0.00 5.68
859 869 4.871513 AGAAAAGAAAGGAAAATGGCGTC 58.128 39.130 0.00 0.00 0.00 5.19
866 876 0.243636 GGAAAATGGCGTCCAAGTGG 59.756 55.000 2.68 0.00 36.95 4.00
867 877 0.243636 GAAAATGGCGTCCAAGTGGG 59.756 55.000 2.68 0.00 36.95 4.61
868 878 0.178975 AAAATGGCGTCCAAGTGGGA 60.179 50.000 2.68 0.00 45.89 4.37
883 893 1.127567 TGGGAGGGTGTGGAAGTCAG 61.128 60.000 0.00 0.00 0.00 3.51
931 941 2.356069 GCTCTGAGGAATAAAAAGGCCG 59.644 50.000 6.83 0.00 0.00 6.13
946 963 2.680913 GCCGCGCACACTCTGAATT 61.681 57.895 8.75 0.00 0.00 2.17
947 964 1.868997 CCGCGCACACTCTGAATTT 59.131 52.632 8.75 0.00 0.00 1.82
948 965 0.238289 CCGCGCACACTCTGAATTTT 59.762 50.000 8.75 0.00 0.00 1.82
949 966 1.595609 CGCGCACACTCTGAATTTTC 58.404 50.000 8.75 0.00 0.00 2.29
950 967 1.725931 CGCGCACACTCTGAATTTTCC 60.726 52.381 8.75 0.00 0.00 3.13
951 968 1.401539 GCGCACACTCTGAATTTTCCC 60.402 52.381 0.30 0.00 0.00 3.97
954 981 2.489722 GCACACTCTGAATTTTCCCTCC 59.510 50.000 0.00 0.00 0.00 4.30
960 987 4.849235 ACTCTGAATTTTCCCTCCTCTTCT 59.151 41.667 0.00 0.00 0.00 2.85
965 992 0.253207 TTTCCCTCCTCTTCTCCCCC 60.253 60.000 0.00 0.00 0.00 5.40
1094 1136 0.385598 CGACGAGCACGACTTCTTCA 60.386 55.000 11.40 0.00 42.66 3.02
1376 1418 1.070786 GTCAGTGCCACCTCCGAAA 59.929 57.895 0.00 0.00 0.00 3.46
1380 1422 3.235481 TGCCACCTCCGAAACCGA 61.235 61.111 0.00 0.00 0.00 4.69
1382 1424 2.322830 GCCACCTCCGAAACCGAAC 61.323 63.158 0.00 0.00 0.00 3.95
1388 1430 2.067013 CCTCCGAAACCGAACTCTTTC 58.933 52.381 0.00 0.00 0.00 2.62
1389 1431 2.288886 CCTCCGAAACCGAACTCTTTCT 60.289 50.000 0.00 0.00 0.00 2.52
1391 1433 2.067013 CCGAAACCGAACTCTTTCTCC 58.933 52.381 0.00 0.00 0.00 3.71
1392 1434 2.547218 CCGAAACCGAACTCTTTCTCCA 60.547 50.000 0.00 0.00 0.00 3.86
1393 1435 2.475487 CGAAACCGAACTCTTTCTCCAC 59.525 50.000 0.00 0.00 0.00 4.02
1396 1438 1.978580 ACCGAACTCTTTCTCCACCAT 59.021 47.619 0.00 0.00 0.00 3.55
1397 1439 3.170717 ACCGAACTCTTTCTCCACCATA 58.829 45.455 0.00 0.00 0.00 2.74
1398 1440 3.056035 ACCGAACTCTTTCTCCACCATAC 60.056 47.826 0.00 0.00 0.00 2.39
1399 1441 3.179830 CGAACTCTTTCTCCACCATACG 58.820 50.000 0.00 0.00 0.00 3.06
1400 1442 3.367087 CGAACTCTTTCTCCACCATACGT 60.367 47.826 0.00 0.00 0.00 3.57
1401 1443 3.870633 ACTCTTTCTCCACCATACGTC 57.129 47.619 0.00 0.00 0.00 4.34
1402 1444 2.496470 ACTCTTTCTCCACCATACGTCC 59.504 50.000 0.00 0.00 0.00 4.79
1403 1445 1.475280 TCTTTCTCCACCATACGTCCG 59.525 52.381 0.00 0.00 0.00 4.79
1404 1446 1.203994 CTTTCTCCACCATACGTCCGT 59.796 52.381 0.00 0.00 0.00 4.69
1405 1447 0.813184 TTCTCCACCATACGTCCGTC 59.187 55.000 0.00 0.00 0.00 4.79
1406 1448 1.063649 CTCCACCATACGTCCGTCG 59.936 63.158 0.00 0.00 46.00 5.12
1415 1457 2.397252 CGTCCGTCGTCGTCTACC 59.603 66.667 0.71 0.00 35.01 3.18
1416 1458 2.097038 CGTCCGTCGTCGTCTACCT 61.097 63.158 0.71 0.00 35.01 3.08
1417 1459 1.712663 GTCCGTCGTCGTCTACCTC 59.287 63.158 0.71 0.00 35.01 3.85
1418 1460 1.807165 TCCGTCGTCGTCTACCTCG 60.807 63.158 0.71 0.00 35.01 4.63
1419 1461 2.021106 CGTCGTCGTCTACCTCGC 59.979 66.667 0.00 0.00 0.00 5.03
1420 1462 2.021106 GTCGTCGTCTACCTCGCG 59.979 66.667 0.00 0.00 0.00 5.87
1421 1463 2.125952 TCGTCGTCTACCTCGCGA 60.126 61.111 9.26 9.26 35.77 5.87
1426 1468 3.483959 GTCTACCTCGCGACGACT 58.516 61.111 3.71 0.00 0.00 4.18
1434 1476 2.126071 CGCGACGACTTCCATGGT 60.126 61.111 12.58 0.00 0.00 3.55
1439 1481 1.606994 CGACGACTTCCATGGTTTCCA 60.607 52.381 12.58 0.00 38.19 3.53
1441 1483 3.081804 GACGACTTCCATGGTTTCCAAT 58.918 45.455 12.58 0.00 36.95 3.16
1443 1485 4.658063 ACGACTTCCATGGTTTCCAATTA 58.342 39.130 12.58 0.00 36.95 1.40
1447 1489 6.345096 ACTTCCATGGTTTCCAATTAACTG 57.655 37.500 12.58 0.00 36.95 3.16
1450 1492 4.770010 TCCATGGTTTCCAATTAACTGACC 59.230 41.667 12.58 0.00 36.95 4.02
1453 1495 4.148838 TGGTTTCCAATTAACTGACCCTG 58.851 43.478 0.00 0.00 0.00 4.45
1454 1496 4.141135 TGGTTTCCAATTAACTGACCCTGA 60.141 41.667 0.00 0.00 0.00 3.86
1455 1497 5.016831 GGTTTCCAATTAACTGACCCTGAT 58.983 41.667 0.00 0.00 0.00 2.90
1456 1498 5.480422 GGTTTCCAATTAACTGACCCTGATT 59.520 40.000 0.00 0.00 0.00 2.57
1458 1500 7.177744 GGTTTCCAATTAACTGACCCTGATTAA 59.822 37.037 0.00 0.00 0.00 1.40
1459 1501 8.581578 GTTTCCAATTAACTGACCCTGATTAAA 58.418 33.333 0.00 0.00 0.00 1.52
1460 1502 8.893563 TTCCAATTAACTGACCCTGATTAAAT 57.106 30.769 0.00 0.00 0.00 1.40
1468 1510 7.703058 ACTGACCCTGATTAAATTTCGATTT 57.297 32.000 0.00 0.00 0.00 2.17
1469 1511 7.762382 ACTGACCCTGATTAAATTTCGATTTC 58.238 34.615 0.00 0.00 0.00 2.17
1476 1519 9.807649 CCTGATTAAATTTCGATTTCCAGATTT 57.192 29.630 0.00 0.00 0.00 2.17
1700 1743 2.999485 GCACCTGCTGCTCGAGAGA 61.999 63.158 18.75 0.00 43.33 3.10
1742 1785 3.862991 GGCTCCTACGGCTTCCCC 61.863 72.222 0.00 0.00 0.00 4.81
2547 2631 1.216710 GAGCACGACCTCCCTTGAG 59.783 63.158 0.00 0.00 38.42 3.02
2556 2644 1.078848 CTCCCTTGAGGCCTTGACG 60.079 63.158 6.77 0.00 34.80 4.35
2558 2646 1.376037 CCCTTGAGGCCTTGACGAC 60.376 63.158 6.77 0.00 0.00 4.34
2560 2648 0.671781 CCTTGAGGCCTTGACGACAG 60.672 60.000 6.77 0.00 0.00 3.51
2561 2649 1.294659 CTTGAGGCCTTGACGACAGC 61.295 60.000 6.77 0.00 0.00 4.40
2562 2650 2.038814 TTGAGGCCTTGACGACAGCA 62.039 55.000 6.77 0.00 0.00 4.41
2563 2651 1.739562 GAGGCCTTGACGACAGCAG 60.740 63.158 6.77 0.00 0.00 4.24
2564 2652 2.159819 GAGGCCTTGACGACAGCAGA 62.160 60.000 6.77 0.00 0.00 4.26
2565 2653 1.301716 GGCCTTGACGACAGCAGAA 60.302 57.895 0.00 0.00 0.00 3.02
2566 2654 0.884704 GGCCTTGACGACAGCAGAAA 60.885 55.000 0.00 0.00 0.00 2.52
2567 2655 0.235926 GCCTTGACGACAGCAGAAAC 59.764 55.000 0.00 0.00 0.00 2.78
2568 2656 1.581934 CCTTGACGACAGCAGAAACA 58.418 50.000 0.00 0.00 0.00 2.83
2569 2657 1.528586 CCTTGACGACAGCAGAAACAG 59.471 52.381 0.00 0.00 0.00 3.16
2570 2658 2.473816 CTTGACGACAGCAGAAACAGA 58.526 47.619 0.00 0.00 0.00 3.41
2571 2659 2.140065 TGACGACAGCAGAAACAGAG 57.860 50.000 0.00 0.00 0.00 3.35
2572 2660 0.787183 GACGACAGCAGAAACAGAGC 59.213 55.000 0.00 0.00 0.00 4.09
2573 2661 0.390860 ACGACAGCAGAAACAGAGCT 59.609 50.000 0.00 0.00 39.63 4.09
2689 2795 7.041508 GGAATCAGATCAAGGTTACATCACATC 60.042 40.741 0.00 0.00 0.00 3.06
2690 2796 6.298441 TCAGATCAAGGTTACATCACATCA 57.702 37.500 0.00 0.00 0.00 3.07
2691 2797 6.108687 TCAGATCAAGGTTACATCACATCAC 58.891 40.000 0.00 0.00 0.00 3.06
2692 2798 5.876460 CAGATCAAGGTTACATCACATCACA 59.124 40.000 0.00 0.00 0.00 3.58
2693 2799 6.541278 CAGATCAAGGTTACATCACATCACAT 59.459 38.462 0.00 0.00 0.00 3.21
2773 2879 8.450964 TGAATTTGTACTAGTAATTCTTGCAGC 58.549 33.333 21.70 3.13 38.48 5.25
2774 2880 7.921786 ATTTGTACTAGTAATTCTTGCAGCA 57.078 32.000 3.61 0.00 0.00 4.41
2775 2881 6.721571 TTGTACTAGTAATTCTTGCAGCAC 57.278 37.500 3.61 0.00 0.00 4.40
2781 2887 0.828762 AATTCTTGCAGCACTGGCCA 60.829 50.000 4.71 4.71 42.56 5.36
2789 2895 0.320073 CAGCACTGGCCAATTGGTTG 60.320 55.000 25.19 17.12 42.56 3.77
2790 2896 1.668793 GCACTGGCCAATTGGTTGC 60.669 57.895 25.19 21.98 37.57 4.17
2795 2901 1.554160 CTGGCCAATTGGTTGCCATTA 59.446 47.619 25.19 4.71 39.27 1.90
2801 2913 4.142425 GCCAATTGGTTGCCATTATTTTGG 60.142 41.667 25.19 0.00 37.39 3.28
2836 2948 4.693566 TGGTCGTTCCATTCATCTTGTTAC 59.306 41.667 0.00 0.00 41.93 2.50
2841 2967 3.620488 TCCATTCATCTTGTTACAGGGC 58.380 45.455 0.00 0.00 0.00 5.19
2869 2995 1.756538 CAAGTGGTTTGTGCCTTCCTT 59.243 47.619 0.00 0.00 31.92 3.36
2870 2996 1.402787 AGTGGTTTGTGCCTTCCTTG 58.597 50.000 0.00 0.00 0.00 3.61
2871 2997 0.389025 GTGGTTTGTGCCTTCCTTGG 59.611 55.000 0.00 0.00 0.00 3.61
2872 2998 0.758685 TGGTTTGTGCCTTCCTTGGG 60.759 55.000 0.00 0.00 0.00 4.12
2873 2999 0.759060 GGTTTGTGCCTTCCTTGGGT 60.759 55.000 0.00 0.00 0.00 4.51
2874 3000 0.389025 GTTTGTGCCTTCCTTGGGTG 59.611 55.000 0.00 0.00 0.00 4.61
2875 3001 0.032615 TTTGTGCCTTCCTTGGGTGT 60.033 50.000 0.00 0.00 0.00 4.16
2876 3002 0.754957 TTGTGCCTTCCTTGGGTGTG 60.755 55.000 0.00 0.00 0.00 3.82
2881 3025 0.106719 CCTTCCTTGGGTGTGTGTGT 60.107 55.000 0.00 0.00 0.00 3.72
2893 3037 1.004862 TGTGTGTGTTTTGGGTCTCCA 59.995 47.619 0.00 0.00 42.25 3.86
2981 3125 7.715657 AGCAAGAGTCATTTGTAACAAATGAA 58.284 30.769 23.24 12.52 45.06 2.57
3007 3151 9.927668 ACCATTTGTTAAAGAAAAGGTATCATG 57.072 29.630 6.41 0.00 0.00 3.07
3012 3156 9.959749 TTGTTAAAGAAAAGGTATCATGTTGAC 57.040 29.630 0.00 0.00 0.00 3.18
3016 3160 6.037786 AGAAAAGGTATCATGTTGACGAGA 57.962 37.500 0.00 0.00 0.00 4.04
3058 3202 5.539574 TGGAATTTGTCTCATGTTTGTGGAT 59.460 36.000 0.00 0.00 0.00 3.41
3059 3203 6.718912 TGGAATTTGTCTCATGTTTGTGGATA 59.281 34.615 0.00 0.00 0.00 2.59
3060 3204 7.094248 TGGAATTTGTCTCATGTTTGTGGATAG 60.094 37.037 0.00 0.00 0.00 2.08
3061 3205 7.094205 GGAATTTGTCTCATGTTTGTGGATAGT 60.094 37.037 0.00 0.00 0.00 2.12
3064 3208 7.581213 TTGTCTCATGTTTGTGGATAGTTTT 57.419 32.000 0.00 0.00 0.00 2.43
3078 3226 4.762251 GGATAGTTTTGCTCACCAGACTTT 59.238 41.667 0.00 0.00 0.00 2.66
3256 3633 7.644986 CAGTGTACTGCTTCTATTATTAGCC 57.355 40.000 0.00 0.00 37.15 3.93
3268 3645 9.784531 CTTCTATTATTAGCCTGATTTTCCTGA 57.215 33.333 0.00 0.00 0.00 3.86
3275 3672 3.008835 CCTGATTTTCCTGATCTGGCA 57.991 47.619 13.60 0.00 36.33 4.92
3282 3679 1.661463 TCCTGATCTGGCAGAACCTT 58.339 50.000 22.84 4.36 40.22 3.50
3289 3686 2.991540 GGCAGAACCTTGGGTGGC 60.992 66.667 0.00 0.00 35.34 5.01
3333 3733 4.584638 TTAGCAGTATTGGACCACCATT 57.415 40.909 0.00 0.00 46.34 3.16
3340 3740 6.414732 CAGTATTGGACCACCATTAAGAAGA 58.585 40.000 0.00 0.00 46.34 2.87
3346 3746 4.944317 GGACCACCATTAAGAAGAAGAAGG 59.056 45.833 0.00 0.00 35.97 3.46
3381 3781 1.065636 GTTCTTGGGGCTGGTACCTAC 60.066 57.143 14.36 4.75 0.00 3.18
3500 5512 1.002257 AACCACATCTCGGCATGCA 60.002 52.632 21.36 0.00 0.00 3.96
3501 5513 1.308069 AACCACATCTCGGCATGCAC 61.308 55.000 21.36 8.08 0.00 4.57
3522 5534 1.820581 GGTCGTAGTATGGCCTGCA 59.179 57.895 3.32 0.00 0.00 4.41
3524 5536 0.744874 GTCGTAGTATGGCCTGCAGA 59.255 55.000 17.39 0.00 0.00 4.26
3558 5570 2.029918 GTGACAATGACCAAAGGAAGCC 60.030 50.000 0.00 0.00 0.00 4.35
3567 5579 2.241659 AAAGGAAGCCAGGGAGGGG 61.242 63.158 0.00 0.00 38.09 4.79
3575 5587 2.356667 CAGGGAGGGGAAAGCCAC 59.643 66.667 0.00 0.00 38.12 5.01
3576 5588 2.941583 AGGGAGGGGAAAGCCACC 60.942 66.667 0.00 0.00 38.89 4.61
3595 5610 1.147600 GGACGGACACCCAAGTTGT 59.852 57.895 1.45 0.00 0.00 3.32
3596 5611 1.164041 GGACGGACACCCAAGTTGTG 61.164 60.000 1.45 0.00 39.63 3.33
3639 5654 9.558396 TGCATTTAATTGGAGAAGAAAACATTT 57.442 25.926 0.00 0.00 0.00 2.32
3682 5697 8.628116 CATCACAATGTTGATGGCATCATCTTG 61.628 40.741 29.22 28.26 46.29 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.322816 TGAACGTAGCCGGGACTACT 60.323 55.000 19.41 1.28 40.36 2.57
1 2 0.527565 TTGAACGTAGCCGGGACTAC 59.472 55.000 2.18 6.37 39.35 2.73
2 3 0.527565 GTTGAACGTAGCCGGGACTA 59.472 55.000 2.18 0.00 38.78 2.59
3 4 1.291272 GTTGAACGTAGCCGGGACT 59.709 57.895 2.18 0.00 38.78 3.85
4 5 1.739196 GGTTGAACGTAGCCGGGAC 60.739 63.158 2.18 0.00 38.78 4.46
5 6 2.162338 CTGGTTGAACGTAGCCGGGA 62.162 60.000 2.18 0.00 38.78 5.14
6 7 1.740296 CTGGTTGAACGTAGCCGGG 60.740 63.158 2.18 0.00 38.78 5.73
7 8 0.601841 AACTGGTTGAACGTAGCCGG 60.602 55.000 0.00 0.00 38.78 6.13
8 9 1.070175 CAAACTGGTTGAACGTAGCCG 60.070 52.381 0.00 0.00 39.87 5.52
9 10 1.265905 CCAAACTGGTTGAACGTAGCC 59.734 52.381 7.08 0.00 39.87 3.93
10 11 2.215196 TCCAAACTGGTTGAACGTAGC 58.785 47.619 7.08 0.00 39.87 3.58
11 12 3.188460 CCATCCAAACTGGTTGAACGTAG 59.812 47.826 7.08 0.00 39.08 3.51
12 13 3.142951 CCATCCAAACTGGTTGAACGTA 58.857 45.455 7.08 0.00 39.08 3.57
13 14 1.953686 CCATCCAAACTGGTTGAACGT 59.046 47.619 7.08 0.00 39.08 3.99
14 15 1.953686 ACCATCCAAACTGGTTGAACG 59.046 47.619 7.08 0.00 44.67 3.95
15 16 2.545742 GCACCATCCAAACTGGTTGAAC 60.546 50.000 7.08 0.00 44.67 3.18
16 17 1.686052 GCACCATCCAAACTGGTTGAA 59.314 47.619 7.08 0.00 44.67 2.69
17 18 1.327303 GCACCATCCAAACTGGTTGA 58.673 50.000 7.08 0.00 44.67 3.18
18 19 0.318120 GGCACCATCCAAACTGGTTG 59.682 55.000 0.00 0.00 44.67 3.77
19 20 0.105760 TGGCACCATCCAAACTGGTT 60.106 50.000 0.00 0.00 44.67 3.67
20 21 2.370040 GTTGGCACCATCCAAACTGGT 61.370 52.381 0.00 0.00 46.63 4.00
21 22 0.318120 GTTGGCACCATCCAAACTGG 59.682 55.000 0.00 0.00 46.63 4.00
22 23 1.039068 TGTTGGCACCATCCAAACTG 58.961 50.000 0.00 0.00 46.63 3.16
23 24 1.786937 TTGTTGGCACCATCCAAACT 58.213 45.000 0.00 0.00 46.63 2.66
24 25 2.837532 ATTGTTGGCACCATCCAAAC 57.162 45.000 6.43 0.00 46.63 2.93
25 26 4.155709 TCTTATTGTTGGCACCATCCAAA 58.844 39.130 6.43 0.00 46.63 3.28
26 27 3.772387 TCTTATTGTTGGCACCATCCAA 58.228 40.909 5.16 5.16 43.36 3.53
27 28 3.448093 TCTTATTGTTGGCACCATCCA 57.552 42.857 0.00 0.00 0.00 3.41
28 29 4.685924 CAATCTTATTGTTGGCACCATCC 58.314 43.478 0.00 0.00 0.00 3.51
29 30 4.114794 GCAATCTTATTGTTGGCACCATC 58.885 43.478 0.00 0.00 0.00 3.51
30 31 3.770933 AGCAATCTTATTGTTGGCACCAT 59.229 39.130 0.00 0.00 0.00 3.55
31 32 3.056678 CAGCAATCTTATTGTTGGCACCA 60.057 43.478 8.18 0.00 0.00 4.17
32 33 3.056607 ACAGCAATCTTATTGTTGGCACC 60.057 43.478 17.16 0.00 35.37 5.01
33 34 4.178545 ACAGCAATCTTATTGTTGGCAC 57.821 40.909 17.16 0.00 35.37 5.01
34 35 4.870123 AACAGCAATCTTATTGTTGGCA 57.130 36.364 17.16 0.00 35.37 4.92
35 36 5.807011 CCTAAACAGCAATCTTATTGTTGGC 59.193 40.000 17.16 0.00 35.37 4.52
36 37 5.807011 GCCTAAACAGCAATCTTATTGTTGG 59.193 40.000 17.16 4.25 35.37 3.77
37 38 6.389091 TGCCTAAACAGCAATCTTATTGTTG 58.611 36.000 12.97 12.97 37.28 3.33
38 39 6.588719 TGCCTAAACAGCAATCTTATTGTT 57.411 33.333 1.94 0.00 37.28 2.83
39 40 6.780457 ATGCCTAAACAGCAATCTTATTGT 57.220 33.333 1.94 0.00 44.83 2.71
40 41 7.037438 ACAATGCCTAAACAGCAATCTTATTG 58.963 34.615 0.00 0.00 44.83 1.90
41 42 7.174107 ACAATGCCTAAACAGCAATCTTATT 57.826 32.000 0.00 0.00 44.83 1.40
42 43 6.780457 ACAATGCCTAAACAGCAATCTTAT 57.220 33.333 0.00 0.00 44.83 1.73
43 44 7.555914 TGATACAATGCCTAAACAGCAATCTTA 59.444 33.333 0.00 0.00 44.83 2.10
44 45 6.377996 TGATACAATGCCTAAACAGCAATCTT 59.622 34.615 0.00 0.00 44.83 2.40
45 46 5.887598 TGATACAATGCCTAAACAGCAATCT 59.112 36.000 0.00 0.00 44.83 2.40
46 47 6.135290 TGATACAATGCCTAAACAGCAATC 57.865 37.500 0.00 0.00 44.83 2.67
47 48 6.720112 ATGATACAATGCCTAAACAGCAAT 57.280 33.333 0.00 0.00 44.83 3.56
48 49 7.822161 ATATGATACAATGCCTAAACAGCAA 57.178 32.000 0.00 0.00 44.83 3.91
49 50 7.822161 AATATGATACAATGCCTAAACAGCA 57.178 32.000 0.00 0.00 45.94 4.41
50 51 9.533253 AAAAATATGATACAATGCCTAAACAGC 57.467 29.630 0.00 0.00 0.00 4.40
73 74 3.810310 AATCGCCACAACAAGGAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
74 75 3.810310 AAATCGCCACAACAAGGAAAA 57.190 38.095 0.00 0.00 0.00 2.29
75 76 3.886505 AGTAAATCGCCACAACAAGGAAA 59.113 39.130 0.00 0.00 0.00 3.13
76 77 3.482436 AGTAAATCGCCACAACAAGGAA 58.518 40.909 0.00 0.00 0.00 3.36
77 78 3.134574 AGTAAATCGCCACAACAAGGA 57.865 42.857 0.00 0.00 0.00 3.36
78 79 3.915437 AAGTAAATCGCCACAACAAGG 57.085 42.857 0.00 0.00 0.00 3.61
79 80 5.174943 GGAAAAAGTAAATCGCCACAACAAG 59.825 40.000 0.00 0.00 0.00 3.16
80 81 5.044558 GGAAAAAGTAAATCGCCACAACAA 58.955 37.500 0.00 0.00 0.00 2.83
81 82 4.500035 GGGAAAAAGTAAATCGCCACAACA 60.500 41.667 0.00 0.00 0.00 3.33
82 83 3.985279 GGGAAAAAGTAAATCGCCACAAC 59.015 43.478 0.00 0.00 0.00 3.32
83 84 3.892588 AGGGAAAAAGTAAATCGCCACAA 59.107 39.130 0.00 0.00 0.00 3.33
84 85 3.254657 CAGGGAAAAAGTAAATCGCCACA 59.745 43.478 0.00 0.00 0.00 4.17
85 86 3.254903 ACAGGGAAAAAGTAAATCGCCAC 59.745 43.478 0.00 0.00 0.00 5.01
86 87 3.492337 ACAGGGAAAAAGTAAATCGCCA 58.508 40.909 0.00 0.00 0.00 5.69
87 88 4.234574 CAACAGGGAAAAAGTAAATCGCC 58.765 43.478 0.00 0.00 0.00 5.54
88 89 3.673338 GCAACAGGGAAAAAGTAAATCGC 59.327 43.478 0.00 0.00 0.00 4.58
89 90 3.911964 CGCAACAGGGAAAAAGTAAATCG 59.088 43.478 0.00 0.00 0.00 3.34
90 91 4.866921 ACGCAACAGGGAAAAAGTAAATC 58.133 39.130 0.00 0.00 0.00 2.17
91 92 4.583073 AGACGCAACAGGGAAAAAGTAAAT 59.417 37.500 0.00 0.00 0.00 1.40
92 93 3.949113 AGACGCAACAGGGAAAAAGTAAA 59.051 39.130 0.00 0.00 0.00 2.01
93 94 3.314080 CAGACGCAACAGGGAAAAAGTAA 59.686 43.478 0.00 0.00 0.00 2.24
94 95 2.875933 CAGACGCAACAGGGAAAAAGTA 59.124 45.455 0.00 0.00 0.00 2.24
95 96 1.676006 CAGACGCAACAGGGAAAAAGT 59.324 47.619 0.00 0.00 0.00 2.66
96 97 1.676006 ACAGACGCAACAGGGAAAAAG 59.324 47.619 0.00 0.00 0.00 2.27
97 98 1.757682 ACAGACGCAACAGGGAAAAA 58.242 45.000 0.00 0.00 0.00 1.94
98 99 1.757682 AACAGACGCAACAGGGAAAA 58.242 45.000 0.00 0.00 0.00 2.29
99 100 1.403679 CAAACAGACGCAACAGGGAAA 59.596 47.619 0.00 0.00 0.00 3.13
100 101 1.021202 CAAACAGACGCAACAGGGAA 58.979 50.000 0.00 0.00 0.00 3.97
101 102 0.817634 CCAAACAGACGCAACAGGGA 60.818 55.000 0.00 0.00 0.00 4.20
102 103 1.654220 CCAAACAGACGCAACAGGG 59.346 57.895 0.00 0.00 0.00 4.45
103 104 1.654220 CCCAAACAGACGCAACAGG 59.346 57.895 0.00 0.00 0.00 4.00
104 105 1.008538 GCCCAAACAGACGCAACAG 60.009 57.895 0.00 0.00 0.00 3.16
105 106 1.750780 TGCCCAAACAGACGCAACA 60.751 52.632 0.00 0.00 0.00 3.33
106 107 1.299089 GTGCCCAAACAGACGCAAC 60.299 57.895 0.00 0.00 32.04 4.17
107 108 1.034838 AAGTGCCCAAACAGACGCAA 61.035 50.000 0.00 0.00 32.04 4.85
108 109 1.453015 AAGTGCCCAAACAGACGCA 60.453 52.632 0.00 0.00 0.00 5.24
109 110 1.008538 CAAGTGCCCAAACAGACGC 60.009 57.895 0.00 0.00 0.00 5.19
110 111 0.588252 CTCAAGTGCCCAAACAGACG 59.412 55.000 0.00 0.00 0.00 4.18
111 112 1.967319 TCTCAAGTGCCCAAACAGAC 58.033 50.000 0.00 0.00 0.00 3.51
112 113 2.106338 TCATCTCAAGTGCCCAAACAGA 59.894 45.455 0.00 0.00 0.00 3.41
113 114 2.486982 CTCATCTCAAGTGCCCAAACAG 59.513 50.000 0.00 0.00 0.00 3.16
114 115 2.106338 TCTCATCTCAAGTGCCCAAACA 59.894 45.455 0.00 0.00 0.00 2.83
115 116 2.485814 GTCTCATCTCAAGTGCCCAAAC 59.514 50.000 0.00 0.00 0.00 2.93
116 117 2.373169 AGTCTCATCTCAAGTGCCCAAA 59.627 45.455 0.00 0.00 0.00 3.28
117 118 1.980765 AGTCTCATCTCAAGTGCCCAA 59.019 47.619 0.00 0.00 0.00 4.12
118 119 1.552337 GAGTCTCATCTCAAGTGCCCA 59.448 52.381 0.00 0.00 34.88 5.36
119 120 1.552337 TGAGTCTCATCTCAAGTGCCC 59.448 52.381 0.00 0.00 40.82 5.36
120 121 2.233431 ACTGAGTCTCATCTCAAGTGCC 59.767 50.000 2.22 0.00 42.73 5.01
121 122 3.591196 ACTGAGTCTCATCTCAAGTGC 57.409 47.619 2.22 0.00 42.73 4.40
122 123 4.689812 CCAAACTGAGTCTCATCTCAAGTG 59.310 45.833 2.22 0.00 42.73 3.16
123 124 4.590647 TCCAAACTGAGTCTCATCTCAAGT 59.409 41.667 2.22 0.00 42.73 3.16
124 125 5.144692 TCCAAACTGAGTCTCATCTCAAG 57.855 43.478 2.22 0.00 42.73 3.02
125 126 5.752036 ATCCAAACTGAGTCTCATCTCAA 57.248 39.130 2.22 0.00 42.73 3.02
126 127 6.857437 TTATCCAAACTGAGTCTCATCTCA 57.143 37.500 2.22 0.00 41.40 3.27
127 128 7.593273 CGTATTATCCAAACTGAGTCTCATCTC 59.407 40.741 2.22 0.00 35.28 2.75
128 129 7.068839 ACGTATTATCCAAACTGAGTCTCATCT 59.931 37.037 2.22 0.00 0.00 2.90
129 130 7.203910 ACGTATTATCCAAACTGAGTCTCATC 58.796 38.462 2.22 0.00 0.00 2.92
130 131 7.113658 ACGTATTATCCAAACTGAGTCTCAT 57.886 36.000 2.22 0.00 0.00 2.90
131 132 6.525578 ACGTATTATCCAAACTGAGTCTCA 57.474 37.500 1.78 1.78 0.00 3.27
132 133 7.674240 GCAAACGTATTATCCAAACTGAGTCTC 60.674 40.741 0.00 0.00 0.00 3.36
133 134 6.092259 GCAAACGTATTATCCAAACTGAGTCT 59.908 38.462 0.00 0.00 0.00 3.24
134 135 6.092259 AGCAAACGTATTATCCAAACTGAGTC 59.908 38.462 0.00 0.00 0.00 3.36
135 136 5.938125 AGCAAACGTATTATCCAAACTGAGT 59.062 36.000 0.00 0.00 0.00 3.41
136 137 6.422776 AGCAAACGTATTATCCAAACTGAG 57.577 37.500 0.00 0.00 0.00 3.35
137 138 6.428465 TCAAGCAAACGTATTATCCAAACTGA 59.572 34.615 0.00 0.00 0.00 3.41
138 139 6.607689 TCAAGCAAACGTATTATCCAAACTG 58.392 36.000 0.00 0.00 0.00 3.16
139 140 6.811253 TCAAGCAAACGTATTATCCAAACT 57.189 33.333 0.00 0.00 0.00 2.66
140 141 9.562583 TTATTCAAGCAAACGTATTATCCAAAC 57.437 29.630 0.00 0.00 0.00 2.93
143 144 9.729023 CATTTATTCAAGCAAACGTATTATCCA 57.271 29.630 0.00 0.00 0.00 3.41
144 145 9.180678 CCATTTATTCAAGCAAACGTATTATCC 57.819 33.333 0.00 0.00 0.00 2.59
145 146 9.730420 ACCATTTATTCAAGCAAACGTATTATC 57.270 29.630 0.00 0.00 0.00 1.75
147 148 9.347934 CAACCATTTATTCAAGCAAACGTATTA 57.652 29.630 0.00 0.00 0.00 0.98
148 149 7.870445 ACAACCATTTATTCAAGCAAACGTATT 59.130 29.630 0.00 0.00 0.00 1.89
149 150 7.328249 CACAACCATTTATTCAAGCAAACGTAT 59.672 33.333 0.00 0.00 0.00 3.06
150 151 6.638873 CACAACCATTTATTCAAGCAAACGTA 59.361 34.615 0.00 0.00 0.00 3.57
151 152 5.461737 CACAACCATTTATTCAAGCAAACGT 59.538 36.000 0.00 0.00 0.00 3.99
152 153 5.461737 ACACAACCATTTATTCAAGCAAACG 59.538 36.000 0.00 0.00 0.00 3.60
153 154 6.648502 CACACAACCATTTATTCAAGCAAAC 58.351 36.000 0.00 0.00 0.00 2.93
154 155 5.236047 GCACACAACCATTTATTCAAGCAAA 59.764 36.000 0.00 0.00 0.00 3.68
155 156 4.749099 GCACACAACCATTTATTCAAGCAA 59.251 37.500 0.00 0.00 0.00 3.91
156 157 4.202192 TGCACACAACCATTTATTCAAGCA 60.202 37.500 0.00 0.00 0.00 3.91
157 158 4.305769 TGCACACAACCATTTATTCAAGC 58.694 39.130 0.00 0.00 0.00 4.01
158 159 5.286797 CGATGCACACAACCATTTATTCAAG 59.713 40.000 0.00 0.00 0.00 3.02
159 160 5.159925 CGATGCACACAACCATTTATTCAA 58.840 37.500 0.00 0.00 0.00 2.69
160 161 4.217334 ACGATGCACACAACCATTTATTCA 59.783 37.500 0.00 0.00 0.00 2.57
161 162 4.732784 ACGATGCACACAACCATTTATTC 58.267 39.130 0.00 0.00 0.00 1.75
162 163 4.782019 ACGATGCACACAACCATTTATT 57.218 36.364 0.00 0.00 0.00 1.40
163 164 4.782019 AACGATGCACACAACCATTTAT 57.218 36.364 0.00 0.00 0.00 1.40
164 165 4.202060 ACAAACGATGCACACAACCATTTA 60.202 37.500 0.00 0.00 0.00 1.40
165 166 3.122297 CAAACGATGCACACAACCATTT 58.878 40.909 0.00 0.00 0.00 2.32
166 167 2.100584 ACAAACGATGCACACAACCATT 59.899 40.909 0.00 0.00 0.00 3.16
167 168 1.680735 ACAAACGATGCACACAACCAT 59.319 42.857 0.00 0.00 0.00 3.55
168 169 1.098869 ACAAACGATGCACACAACCA 58.901 45.000 0.00 0.00 0.00 3.67
169 170 1.476074 CACAAACGATGCACACAACC 58.524 50.000 0.00 0.00 0.00 3.77
170 171 0.845768 GCACAAACGATGCACACAAC 59.154 50.000 0.00 0.00 42.88 3.32
171 172 3.248626 GCACAAACGATGCACACAA 57.751 47.368 0.00 0.00 42.88 3.33
177 178 1.267532 CGGTATCTGCACAAACGATGC 60.268 52.381 0.00 0.00 43.68 3.91
178 179 1.327460 CCGGTATCTGCACAAACGATG 59.673 52.381 0.00 0.00 0.00 3.84
179 180 1.651987 CCGGTATCTGCACAAACGAT 58.348 50.000 0.00 0.00 0.00 3.73
180 181 0.390603 CCCGGTATCTGCACAAACGA 60.391 55.000 0.00 0.00 0.00 3.85
181 182 1.366111 CCCCGGTATCTGCACAAACG 61.366 60.000 0.00 0.00 0.00 3.60
182 183 1.029947 CCCCCGGTATCTGCACAAAC 61.030 60.000 0.00 0.00 0.00 2.93
183 184 1.301623 CCCCCGGTATCTGCACAAA 59.698 57.895 0.00 0.00 0.00 2.83
184 185 0.618107 TACCCCCGGTATCTGCACAA 60.618 55.000 0.00 0.00 37.09 3.33
185 186 0.399376 ATACCCCCGGTATCTGCACA 60.399 55.000 0.00 0.00 44.67 4.57
186 187 0.763035 AATACCCCCGGTATCTGCAC 59.237 55.000 0.00 0.00 46.88 4.57
187 188 1.053424 GAATACCCCCGGTATCTGCA 58.947 55.000 0.00 0.00 46.88 4.41
188 189 1.349067 AGAATACCCCCGGTATCTGC 58.651 55.000 0.00 0.00 46.88 4.26
189 190 2.302157 GGAAGAATACCCCCGGTATCTG 59.698 54.545 0.00 0.00 46.88 2.90
190 191 2.090380 TGGAAGAATACCCCCGGTATCT 60.090 50.000 0.00 1.56 46.88 1.98
191 192 2.332117 TGGAAGAATACCCCCGGTATC 58.668 52.381 0.00 0.00 46.88 2.24
193 194 2.500269 ATGGAAGAATACCCCCGGTA 57.500 50.000 0.00 0.00 42.80 4.02
194 195 1.493446 GAATGGAAGAATACCCCCGGT 59.507 52.381 0.00 0.00 40.16 5.28
195 196 1.202891 GGAATGGAAGAATACCCCCGG 60.203 57.143 0.00 0.00 0.00 5.73
196 197 1.542547 CGGAATGGAAGAATACCCCCG 60.543 57.143 0.00 0.00 0.00 5.73
197 198 1.772453 TCGGAATGGAAGAATACCCCC 59.228 52.381 0.00 0.00 0.00 5.40
198 199 3.135895 TCTTCGGAATGGAAGAATACCCC 59.864 47.826 2.73 0.00 46.92 4.95
199 200 4.417426 TCTTCGGAATGGAAGAATACCC 57.583 45.455 2.73 0.00 46.92 3.69
206 207 6.072112 TCTTTTTGTTCTTCGGAATGGAAG 57.928 37.500 0.00 0.00 43.78 3.46
207 208 6.320164 TCTTCTTTTTGTTCTTCGGAATGGAA 59.680 34.615 0.00 0.00 36.27 3.53
208 209 5.825679 TCTTCTTTTTGTTCTTCGGAATGGA 59.174 36.000 0.00 0.00 36.27 3.41
209 210 6.072112 TCTTCTTTTTGTTCTTCGGAATGG 57.928 37.500 0.00 0.00 36.27 3.16
210 211 7.417612 TCTTCTTCTTTTTGTTCTTCGGAATG 58.582 34.615 0.00 0.00 36.27 2.67
211 212 7.568199 TCTTCTTCTTTTTGTTCTTCGGAAT 57.432 32.000 0.00 0.00 36.27 3.01
212 213 6.995511 TCTTCTTCTTTTTGTTCTTCGGAA 57.004 33.333 0.00 0.00 0.00 4.30
213 214 6.995511 TTCTTCTTCTTTTTGTTCTTCGGA 57.004 33.333 0.00 0.00 0.00 4.55
214 215 8.460831 TTTTTCTTCTTCTTTTTGTTCTTCGG 57.539 30.769 0.00 0.00 0.00 4.30
215 216 9.341899 TCTTTTTCTTCTTCTTTTTGTTCTTCG 57.658 29.630 0.00 0.00 0.00 3.79
221 222 9.725019 ACCATTTCTTTTTCTTCTTCTTTTTGT 57.275 25.926 0.00 0.00 0.00 2.83
242 243 9.447157 CCATTTGTACCAATGAAAATAACCATT 57.553 29.630 18.66 0.00 33.66 3.16
243 244 8.820831 TCCATTTGTACCAATGAAAATAACCAT 58.179 29.630 18.66 0.00 0.00 3.55
244 245 8.195165 TCCATTTGTACCAATGAAAATAACCA 57.805 30.769 18.66 0.00 0.00 3.67
245 246 9.665719 ATTCCATTTGTACCAATGAAAATAACC 57.334 29.630 18.66 0.00 0.00 2.85
270 271 9.951866 AGGGAATTATGTTACTTTGGGAATTAT 57.048 29.630 0.00 0.00 0.00 1.28
271 272 9.777008 AAGGGAATTATGTTACTTTGGGAATTA 57.223 29.630 0.00 0.00 0.00 1.40
272 273 8.679344 AAGGGAATTATGTTACTTTGGGAATT 57.321 30.769 0.00 0.00 0.00 2.17
273 274 8.679344 AAAGGGAATTATGTTACTTTGGGAAT 57.321 30.769 0.00 0.00 0.00 3.01
274 275 9.777008 ATAAAGGGAATTATGTTACTTTGGGAA 57.223 29.630 0.00 0.00 31.43 3.97
275 276 9.416284 GATAAAGGGAATTATGTTACTTTGGGA 57.584 33.333 0.00 0.00 31.43 4.37
276 277 8.638873 GGATAAAGGGAATTATGTTACTTTGGG 58.361 37.037 0.00 0.00 31.43 4.12
277 278 9.196139 TGGATAAAGGGAATTATGTTACTTTGG 57.804 33.333 0.00 0.00 31.43 3.28
289 290 8.728098 GCCCTAGATATATGGATAAAGGGAATT 58.272 37.037 8.25 0.00 37.87 2.17
290 291 7.295911 GGCCCTAGATATATGGATAAAGGGAAT 59.704 40.741 8.25 0.00 37.87 3.01
291 292 6.619852 GGCCCTAGATATATGGATAAAGGGAA 59.380 42.308 8.25 0.00 37.87 3.97
292 293 6.066994 AGGCCCTAGATATATGGATAAAGGGA 60.067 42.308 8.25 0.00 37.87 4.20
293 294 6.153924 AGGCCCTAGATATATGGATAAAGGG 58.846 44.000 0.00 0.00 38.27 3.95
294 295 8.798975 TTAGGCCCTAGATATATGGATAAAGG 57.201 38.462 0.00 0.00 0.00 3.11
296 297 9.744125 ACATTAGGCCCTAGATATATGGATAAA 57.256 33.333 0.00 0.00 0.00 1.40
299 300 9.920230 AATACATTAGGCCCTAGATATATGGAT 57.080 33.333 0.00 0.00 0.00 3.41
300 301 9.744125 AAATACATTAGGCCCTAGATATATGGA 57.256 33.333 0.00 0.00 0.00 3.41
305 306 8.822805 TCGAAAAATACATTAGGCCCTAGATAT 58.177 33.333 0.00 0.00 0.00 1.63
306 307 8.197592 TCGAAAAATACATTAGGCCCTAGATA 57.802 34.615 0.00 0.00 0.00 1.98
307 308 7.074653 TCGAAAAATACATTAGGCCCTAGAT 57.925 36.000 0.00 0.00 0.00 1.98
308 309 6.488769 TCGAAAAATACATTAGGCCCTAGA 57.511 37.500 0.00 0.00 0.00 2.43
309 310 6.348540 GCATCGAAAAATACATTAGGCCCTAG 60.349 42.308 0.00 0.00 0.00 3.02
310 311 5.472137 GCATCGAAAAATACATTAGGCCCTA 59.528 40.000 0.00 0.00 0.00 3.53
311 312 4.278419 GCATCGAAAAATACATTAGGCCCT 59.722 41.667 0.00 0.00 0.00 5.19
312 313 4.037446 TGCATCGAAAAATACATTAGGCCC 59.963 41.667 0.00 0.00 0.00 5.80
313 314 5.181690 TGCATCGAAAAATACATTAGGCC 57.818 39.130 0.00 0.00 0.00 5.19
314 315 7.698836 ATTTGCATCGAAAAATACATTAGGC 57.301 32.000 0.00 0.00 0.00 3.93
318 319 9.810231 GTCAAAATTTGCATCGAAAAATACATT 57.190 25.926 0.00 0.00 0.00 2.71
319 320 8.442384 GGTCAAAATTTGCATCGAAAAATACAT 58.558 29.630 0.00 0.00 0.00 2.29
320 321 7.439356 TGGTCAAAATTTGCATCGAAAAATACA 59.561 29.630 0.00 0.00 0.00 2.29
321 322 7.739911 GTGGTCAAAATTTGCATCGAAAAATAC 59.260 33.333 0.00 0.00 0.00 1.89
322 323 7.439356 TGTGGTCAAAATTTGCATCGAAAAATA 59.561 29.630 0.00 0.00 0.00 1.40
323 324 6.259608 TGTGGTCAAAATTTGCATCGAAAAAT 59.740 30.769 0.00 0.00 0.00 1.82
324 325 5.582269 TGTGGTCAAAATTTGCATCGAAAAA 59.418 32.000 0.00 0.00 0.00 1.94
325 326 5.111989 TGTGGTCAAAATTTGCATCGAAAA 58.888 33.333 0.00 0.00 0.00 2.29
326 327 4.686972 TGTGGTCAAAATTTGCATCGAAA 58.313 34.783 0.00 0.00 0.00 3.46
327 328 4.313277 TGTGGTCAAAATTTGCATCGAA 57.687 36.364 0.00 0.00 0.00 3.71
328 329 3.998099 TGTGGTCAAAATTTGCATCGA 57.002 38.095 0.00 0.00 0.00 3.59
329 330 3.989167 ACATGTGGTCAAAATTTGCATCG 59.011 39.130 0.00 0.00 0.00 3.84
330 331 5.520022 GACATGTGGTCAAAATTTGCATC 57.480 39.130 1.15 0.00 46.19 3.91
343 344 3.988976 ACTATTGCTCTGACATGTGGT 57.011 42.857 1.15 0.00 0.00 4.16
344 345 7.330454 GTCATATACTATTGCTCTGACATGTGG 59.670 40.741 1.15 0.00 33.49 4.17
345 346 7.061557 CGTCATATACTATTGCTCTGACATGTG 59.938 40.741 1.15 0.00 32.98 3.21
346 347 7.087007 CGTCATATACTATTGCTCTGACATGT 58.913 38.462 0.00 0.00 32.98 3.21
347 348 7.061557 CACGTCATATACTATTGCTCTGACATG 59.938 40.741 0.00 0.00 32.98 3.21
348 349 7.087007 CACGTCATATACTATTGCTCTGACAT 58.913 38.462 0.00 0.00 32.98 3.06
349 350 6.438763 CACGTCATATACTATTGCTCTGACA 58.561 40.000 0.00 0.00 32.98 3.58
350 351 5.343593 GCACGTCATATACTATTGCTCTGAC 59.656 44.000 0.00 0.00 0.00 3.51
351 352 5.009610 TGCACGTCATATACTATTGCTCTGA 59.990 40.000 0.00 0.00 31.01 3.27
352 353 5.222631 TGCACGTCATATACTATTGCTCTG 58.777 41.667 0.00 0.00 31.01 3.35
353 354 5.453567 TGCACGTCATATACTATTGCTCT 57.546 39.130 0.00 0.00 31.01 4.09
354 355 5.692204 ACTTGCACGTCATATACTATTGCTC 59.308 40.000 0.00 0.00 31.01 4.26
355 356 5.601662 ACTTGCACGTCATATACTATTGCT 58.398 37.500 0.00 0.00 31.01 3.91
356 357 5.907197 ACTTGCACGTCATATACTATTGC 57.093 39.130 0.00 0.00 0.00 3.56
357 358 8.691727 GTCTAACTTGCACGTCATATACTATTG 58.308 37.037 0.00 0.00 0.00 1.90
358 359 8.410912 TGTCTAACTTGCACGTCATATACTATT 58.589 33.333 0.00 0.00 0.00 1.73
359 360 7.937649 TGTCTAACTTGCACGTCATATACTAT 58.062 34.615 0.00 0.00 0.00 2.12
362 363 6.880822 TTGTCTAACTTGCACGTCATATAC 57.119 37.500 0.00 0.00 0.00 1.47
371 372 5.356882 TGTATGCTTTGTCTAACTTGCAC 57.643 39.130 0.00 0.00 33.16 4.57
475 476 7.388290 TGCATTTTTCGAAACTGTATTTCAC 57.612 32.000 10.79 0.00 0.00 3.18
479 480 7.275560 GCCTAATGCATTTTTCGAAACTGTATT 59.724 33.333 25.29 25.29 40.77 1.89
481 482 6.090129 GCCTAATGCATTTTTCGAAACTGTA 58.910 36.000 18.75 11.03 40.77 2.74
482 483 4.923281 GCCTAATGCATTTTTCGAAACTGT 59.077 37.500 18.75 0.00 40.77 3.55
496 497 5.073554 CCATCCATATATAGGGCCTAATGCA 59.926 44.000 18.91 3.38 43.89 3.96
573 575 8.075761 AGTAGTCGATTCCCACTAACTTTAAT 57.924 34.615 0.00 0.00 0.00 1.40
574 576 7.472334 AGTAGTCGATTCCCACTAACTTTAA 57.528 36.000 0.00 0.00 0.00 1.52
576 578 5.997384 AGTAGTCGATTCCCACTAACTTT 57.003 39.130 0.00 0.00 0.00 2.66
577 579 7.341256 TGAATAGTAGTCGATTCCCACTAACTT 59.659 37.037 0.00 0.00 35.71 2.66
586 588 7.423199 TGTGTACATGAATAGTAGTCGATTCC 58.577 38.462 0.00 0.00 35.71 3.01
592 594 9.069082 ACTCCTATGTGTACATGAATAGTAGTC 57.931 37.037 0.00 0.00 37.15 2.59
597 599 8.637196 TCCTACTCCTATGTGTACATGAATAG 57.363 38.462 0.00 7.42 37.15 1.73
599 601 7.914427 TTCCTACTCCTATGTGTACATGAAT 57.086 36.000 0.00 0.00 37.15 2.57
600 602 7.914427 ATTCCTACTCCTATGTGTACATGAA 57.086 36.000 0.00 1.18 37.15 2.57
601 603 7.914427 AATTCCTACTCCTATGTGTACATGA 57.086 36.000 0.00 0.00 37.15 3.07
602 604 8.638873 TGTAATTCCTACTCCTATGTGTACATG 58.361 37.037 7.73 0.00 37.15 3.21
603 605 8.639761 GTGTAATTCCTACTCCTATGTGTACAT 58.360 37.037 0.00 2.75 40.22 2.29
604 606 7.616542 TGTGTAATTCCTACTCCTATGTGTACA 59.383 37.037 0.00 0.00 0.00 2.90
605 607 8.004087 TGTGTAATTCCTACTCCTATGTGTAC 57.996 38.462 0.00 0.00 0.00 2.90
606 608 8.598202 TTGTGTAATTCCTACTCCTATGTGTA 57.402 34.615 0.00 0.00 0.00 2.90
607 609 7.490657 TTGTGTAATTCCTACTCCTATGTGT 57.509 36.000 0.00 0.00 0.00 3.72
608 610 8.204160 TGATTGTGTAATTCCTACTCCTATGTG 58.796 37.037 0.00 0.00 0.00 3.21
609 611 8.319057 TGATTGTGTAATTCCTACTCCTATGT 57.681 34.615 0.00 0.00 0.00 2.29
610 612 9.265901 CTTGATTGTGTAATTCCTACTCCTATG 57.734 37.037 0.00 0.00 0.00 2.23
611 613 8.432805 CCTTGATTGTGTAATTCCTACTCCTAT 58.567 37.037 0.00 0.00 0.00 2.57
612 614 7.402071 ACCTTGATTGTGTAATTCCTACTCCTA 59.598 37.037 0.00 0.00 0.00 2.94
613 615 6.215636 ACCTTGATTGTGTAATTCCTACTCCT 59.784 38.462 0.00 0.00 0.00 3.69
614 616 6.415573 ACCTTGATTGTGTAATTCCTACTCC 58.584 40.000 0.00 0.00 0.00 3.85
628 630 8.043710 TGGAAACAAAATAACAACCTTGATTGT 58.956 29.630 0.00 0.00 40.44 2.71
665 668 8.488651 AAGGAACTAAACGTGTAAATATGGAG 57.511 34.615 0.00 0.00 38.49 3.86
689 693 9.621629 TTCCTGAACTAGTGTCATTCTTTTTAA 57.378 29.630 0.00 0.00 0.00 1.52
707 713 4.015872 TCAATGGTAGTGGTTCCTGAAC 57.984 45.455 1.33 1.33 40.45 3.18
734 740 5.295787 TCCGTCAATTTCTCCCATTTTATCG 59.704 40.000 0.00 0.00 0.00 2.92
749 755 3.751698 GGACAGCTTACTTTCCGTCAATT 59.248 43.478 0.00 0.00 33.18 2.32
753 759 2.450609 TGGACAGCTTACTTTCCGTC 57.549 50.000 0.00 0.00 44.49 4.79
787 794 8.664211 TTTCTACAGTTTGGTTTTGTTTTTGT 57.336 26.923 0.00 0.00 0.00 2.83
823 833 9.379770 TCCTTTCTTTTCTCCCTTGATATTTTT 57.620 29.630 0.00 0.00 0.00 1.94
835 845 4.237724 CGCCATTTTCCTTTCTTTTCTCC 58.762 43.478 0.00 0.00 0.00 3.71
842 852 2.286365 TGGACGCCATTTTCCTTTCT 57.714 45.000 0.00 0.00 32.55 2.52
844 854 2.035832 CACTTGGACGCCATTTTCCTTT 59.964 45.455 0.00 0.00 31.53 3.11
845 855 1.613437 CACTTGGACGCCATTTTCCTT 59.387 47.619 0.00 0.00 31.53 3.36
847 857 0.243636 CCACTTGGACGCCATTTTCC 59.756 55.000 0.00 0.00 37.39 3.13
853 863 3.636231 CCTCCCACTTGGACGCCA 61.636 66.667 0.00 0.00 38.61 5.69
854 864 4.410400 CCCTCCCACTTGGACGCC 62.410 72.222 0.00 0.00 38.61 5.68
855 865 3.637273 ACCCTCCCACTTGGACGC 61.637 66.667 0.00 0.00 38.61 5.19
856 866 2.347490 CACCCTCCCACTTGGACG 59.653 66.667 0.00 0.00 38.61 4.79
857 867 1.073199 CACACCCTCCCACTTGGAC 59.927 63.158 0.00 0.00 38.61 4.02
858 868 2.153401 CCACACCCTCCCACTTGGA 61.153 63.158 0.00 0.00 42.41 3.53
859 869 1.715019 TTCCACACCCTCCCACTTGG 61.715 60.000 0.00 0.00 0.00 3.61
866 876 1.679898 CCTGACTTCCACACCCTCC 59.320 63.158 0.00 0.00 0.00 4.30
867 877 1.679898 CCCTGACTTCCACACCCTC 59.320 63.158 0.00 0.00 0.00 4.30
868 878 2.529744 GCCCTGACTTCCACACCCT 61.530 63.158 0.00 0.00 0.00 4.34
883 893 1.032114 CCGGTTGGATCTTTCTGCCC 61.032 60.000 0.00 0.00 37.49 5.36
931 941 1.401539 GGGAAAATTCAGAGTGTGCGC 60.402 52.381 0.00 0.00 0.00 6.09
946 963 0.253207 GGGGGAGAAGAGGAGGGAAA 60.253 60.000 0.00 0.00 0.00 3.13
947 964 1.396594 GGGGGAGAAGAGGAGGGAA 59.603 63.158 0.00 0.00 0.00 3.97
948 965 3.120191 GGGGGAGAAGAGGAGGGA 58.880 66.667 0.00 0.00 0.00 4.20
973 1000 4.006357 GCGGTGGGTGGTACGGAA 62.006 66.667 0.00 0.00 0.00 4.30
1034 1071 3.866582 GTGCCCCATCTCCTCCGG 61.867 72.222 0.00 0.00 0.00 5.14
1072 1114 3.891586 GAAGTCGTGCTCGTCGCCA 62.892 63.158 8.17 0.00 38.05 5.69
1376 1418 1.420430 TGGTGGAGAAAGAGTTCGGT 58.580 50.000 0.00 0.00 38.90 4.69
1380 1422 3.056035 GGACGTATGGTGGAGAAAGAGTT 60.056 47.826 0.00 0.00 0.00 3.01
1382 1424 2.479730 CGGACGTATGGTGGAGAAAGAG 60.480 54.545 0.00 0.00 0.00 2.85
1388 1430 1.063649 CGACGGACGTATGGTGGAG 59.936 63.158 0.00 0.00 37.22 3.86
1389 1431 3.189921 CGACGGACGTATGGTGGA 58.810 61.111 0.00 0.00 37.22 4.02
1399 1441 1.712663 GAGGTAGACGACGACGGAC 59.287 63.158 12.58 6.48 44.46 4.79
1400 1442 1.807165 CGAGGTAGACGACGACGGA 60.807 63.158 12.58 0.00 44.46 4.69
1401 1443 2.699809 CGAGGTAGACGACGACGG 59.300 66.667 12.58 0.00 44.46 4.79
1402 1444 2.021106 GCGAGGTAGACGACGACG 59.979 66.667 5.58 5.58 45.75 5.12
1403 1445 2.021106 CGCGAGGTAGACGACGAC 59.979 66.667 0.00 0.00 34.42 4.34
1404 1446 2.125952 TCGCGAGGTAGACGACGA 60.126 61.111 3.71 0.00 37.14 4.20
1405 1447 2.021106 GTCGCGAGGTAGACGACG 59.979 66.667 10.24 0.00 45.52 5.12
1409 1451 0.247616 GAAGTCGTCGCGAGGTAGAC 60.248 60.000 26.11 22.45 36.23 2.59
1410 1452 1.364626 GGAAGTCGTCGCGAGGTAGA 61.365 60.000 26.11 13.17 36.23 2.59
1411 1453 1.062206 GGAAGTCGTCGCGAGGTAG 59.938 63.158 26.11 11.08 36.23 3.18
1412 1454 1.028330 ATGGAAGTCGTCGCGAGGTA 61.028 55.000 26.11 11.96 36.23 3.08
1413 1455 2.341101 ATGGAAGTCGTCGCGAGGT 61.341 57.895 26.11 9.34 36.23 3.85
1414 1456 1.874019 CATGGAAGTCGTCGCGAGG 60.874 63.158 22.14 22.14 36.23 4.63
1415 1457 1.874019 CCATGGAAGTCGTCGCGAG 60.874 63.158 10.24 3.82 36.23 5.03
1416 1458 2.149803 AACCATGGAAGTCGTCGCGA 62.150 55.000 21.47 3.71 0.00 5.87
1417 1459 1.289109 AAACCATGGAAGTCGTCGCG 61.289 55.000 21.47 0.00 0.00 5.87
1418 1460 0.442699 GAAACCATGGAAGTCGTCGC 59.557 55.000 21.47 0.00 0.00 5.19
1419 1461 1.076332 GGAAACCATGGAAGTCGTCG 58.924 55.000 21.47 0.00 0.00 5.12
1420 1462 2.178912 TGGAAACCATGGAAGTCGTC 57.821 50.000 21.47 5.71 0.00 4.20
1421 1463 2.649531 TTGGAAACCATGGAAGTCGT 57.350 45.000 21.47 0.00 31.53 4.34
1422 1464 5.183140 AGTTAATTGGAAACCATGGAAGTCG 59.817 40.000 21.47 0.00 31.53 4.18
1423 1465 6.208599 TCAGTTAATTGGAAACCATGGAAGTC 59.791 38.462 21.47 11.89 31.53 3.01
1424 1466 6.015434 GTCAGTTAATTGGAAACCATGGAAGT 60.015 38.462 21.47 3.26 31.53 3.01
1425 1467 6.389906 GTCAGTTAATTGGAAACCATGGAAG 58.610 40.000 21.47 0.00 31.53 3.46
1426 1468 5.245075 GGTCAGTTAATTGGAAACCATGGAA 59.755 40.000 21.47 1.18 31.53 3.53
1434 1476 8.713708 TTTAATCAGGGTCAGTTAATTGGAAA 57.286 30.769 0.00 0.00 0.00 3.13
1439 1481 9.238368 TCGAAATTTAATCAGGGTCAGTTAATT 57.762 29.630 0.00 0.00 0.00 1.40
1441 1483 8.801882 ATCGAAATTTAATCAGGGTCAGTTAA 57.198 30.769 0.00 0.00 0.00 2.01
1443 1485 7.703058 AATCGAAATTTAATCAGGGTCAGTT 57.297 32.000 0.00 0.00 0.00 3.16
1447 1489 7.067008 TCTGGAAATCGAAATTTAATCAGGGTC 59.933 37.037 0.00 0.00 35.21 4.46
1450 1492 9.807649 AAATCTGGAAATCGAAATTTAATCAGG 57.192 29.630 0.00 0.00 35.21 3.86
1458 1500 9.143631 GAACATCAAAATCTGGAAATCGAAATT 57.856 29.630 0.00 0.00 0.00 1.82
1459 1501 7.485913 CGAACATCAAAATCTGGAAATCGAAAT 59.514 33.333 0.00 0.00 0.00 2.17
1460 1502 6.801377 CGAACATCAAAATCTGGAAATCGAAA 59.199 34.615 0.00 0.00 0.00 3.46
1468 1510 3.926527 CGAGTCGAACATCAAAATCTGGA 59.073 43.478 6.73 0.00 0.00 3.86
1469 1511 3.062639 CCGAGTCGAACATCAAAATCTGG 59.937 47.826 15.64 0.00 0.00 3.86
1476 1519 2.400399 GTTCACCGAGTCGAACATCAA 58.600 47.619 15.64 0.00 40.97 2.57
1511 1554 4.137872 TAGTAGGCCGCGTGGTGC 62.138 66.667 17.91 2.35 41.47 5.01
2090 2144 3.676924 GACCTCGTCGTCGTCGTCG 62.677 68.421 14.18 14.18 46.06 5.12
2091 2145 2.095469 GACCTCGTCGTCGTCGTC 59.905 66.667 11.41 5.41 38.33 4.20
2547 2631 0.884704 TTTCTGCTGTCGTCAAGGCC 60.885 55.000 0.00 0.00 0.00 5.19
2550 2638 2.473816 TCTGTTTCTGCTGTCGTCAAG 58.526 47.619 0.00 0.00 0.00 3.02
2551 2639 2.473816 CTCTGTTTCTGCTGTCGTCAA 58.526 47.619 0.00 0.00 0.00 3.18
2552 2640 1.869754 GCTCTGTTTCTGCTGTCGTCA 60.870 52.381 0.00 0.00 0.00 4.35
2553 2641 0.787183 GCTCTGTTTCTGCTGTCGTC 59.213 55.000 0.00 0.00 0.00 4.20
2554 2642 0.390860 AGCTCTGTTTCTGCTGTCGT 59.609 50.000 0.00 0.00 35.54 4.34
2555 2643 0.788995 CAGCTCTGTTTCTGCTGTCG 59.211 55.000 6.09 0.00 46.23 4.35
2560 2648 2.479656 CTCTGTTCAGCTCTGTTTCTGC 59.520 50.000 0.00 0.00 0.00 4.26
2561 2649 2.479656 GCTCTGTTCAGCTCTGTTTCTG 59.520 50.000 0.00 0.00 36.38 3.02
2562 2650 2.103771 TGCTCTGTTCAGCTCTGTTTCT 59.896 45.455 0.00 0.00 40.39 2.52
2563 2651 2.479656 CTGCTCTGTTCAGCTCTGTTTC 59.520 50.000 0.00 0.00 40.39 2.78
2564 2652 2.103771 TCTGCTCTGTTCAGCTCTGTTT 59.896 45.455 0.00 0.00 40.39 2.83
2565 2653 1.690893 TCTGCTCTGTTCAGCTCTGTT 59.309 47.619 0.00 0.00 40.39 3.16
2566 2654 1.273048 CTCTGCTCTGTTCAGCTCTGT 59.727 52.381 0.00 0.00 40.39 3.41
2567 2655 1.999048 CTCTGCTCTGTTCAGCTCTG 58.001 55.000 0.00 0.00 40.39 3.35
2568 2656 0.247185 GCTCTGCTCTGTTCAGCTCT 59.753 55.000 0.00 0.00 40.39 4.09
2569 2657 0.037512 TGCTCTGCTCTGTTCAGCTC 60.038 55.000 0.00 0.00 40.39 4.09
2570 2658 0.037139 CTGCTCTGCTCTGTTCAGCT 60.037 55.000 0.00 0.00 40.39 4.24
2571 2659 1.637478 GCTGCTCTGCTCTGTTCAGC 61.637 60.000 0.00 0.00 39.82 4.26
2572 2660 1.020333 GGCTGCTCTGCTCTGTTCAG 61.020 60.000 0.00 0.00 0.00 3.02
2573 2661 1.004080 GGCTGCTCTGCTCTGTTCA 60.004 57.895 0.00 0.00 0.00 3.18
2576 2664 1.478526 TTCTGGCTGCTCTGCTCTGT 61.479 55.000 0.00 0.00 0.00 3.41
2711 2817 9.609346 TCTGCAAGTATAAATTACCTTTACTCC 57.391 33.333 0.00 0.00 31.22 3.85
2768 2874 2.575893 CCAATTGGCCAGTGCTGCA 61.576 57.895 12.53 0.00 37.74 4.41
2769 2875 2.103339 AACCAATTGGCCAGTGCTGC 62.103 55.000 24.79 0.00 39.32 5.25
2770 2876 0.320073 CAACCAATTGGCCAGTGCTG 60.320 55.000 24.79 0.00 39.32 4.41
2771 2877 2.051941 CAACCAATTGGCCAGTGCT 58.948 52.632 24.79 0.00 39.32 4.40
2772 2878 1.668793 GCAACCAATTGGCCAGTGC 60.669 57.895 24.79 22.25 39.32 4.40
2773 2879 4.679412 GCAACCAATTGGCCAGTG 57.321 55.556 24.79 17.13 39.32 3.66
2841 2967 2.203401 CACAAACCACTTGGCACATTG 58.797 47.619 0.00 0.00 39.30 2.82
2869 2995 0.251832 ACCCAAAACACACACACCCA 60.252 50.000 0.00 0.00 0.00 4.51
2870 2996 0.458260 GACCCAAAACACACACACCC 59.542 55.000 0.00 0.00 0.00 4.61
2871 2997 1.404035 GAGACCCAAAACACACACACC 59.596 52.381 0.00 0.00 0.00 4.16
2872 2998 1.404035 GGAGACCCAAAACACACACAC 59.596 52.381 0.00 0.00 0.00 3.82
2873 2999 1.004862 TGGAGACCCAAAACACACACA 59.995 47.619 0.00 0.00 40.09 3.72
2874 3000 1.757682 TGGAGACCCAAAACACACAC 58.242 50.000 0.00 0.00 40.09 3.82
2893 3037 6.085555 GATGCATTCATCATGGTCAAGAAT 57.914 37.500 0.00 0.00 46.44 2.40
2981 3125 9.927668 CATGATACCTTTTCTTTAACAAATGGT 57.072 29.630 15.64 15.64 41.65 3.55
3007 3151 2.428491 TCTCACCTCTCTCTCGTCAAC 58.572 52.381 0.00 0.00 0.00 3.18
3012 3156 2.340210 TCCATCTCACCTCTCTCTCG 57.660 55.000 0.00 0.00 0.00 4.04
3016 3160 2.517553 TCCAGATCCATCTCACCTCTCT 59.482 50.000 0.00 0.00 34.22 3.10
3058 3202 5.925509 AGTAAAGTCTGGTGAGCAAAACTA 58.074 37.500 0.59 0.00 0.00 2.24
3059 3203 4.781934 AGTAAAGTCTGGTGAGCAAAACT 58.218 39.130 0.00 0.00 0.00 2.66
3060 3204 5.065988 TCAAGTAAAGTCTGGTGAGCAAAAC 59.934 40.000 0.00 0.00 0.00 2.43
3061 3205 5.189928 TCAAGTAAAGTCTGGTGAGCAAAA 58.810 37.500 0.00 0.00 0.00 2.44
3064 3208 4.318332 CATCAAGTAAAGTCTGGTGAGCA 58.682 43.478 0.00 0.00 0.00 4.26
3078 3226 7.564793 AGTCATGTTATTAGGTGCATCAAGTA 58.435 34.615 0.00 0.00 0.00 2.24
3256 3633 3.882444 TCTGCCAGATCAGGAAAATCAG 58.118 45.455 8.61 5.44 34.91 2.90
3268 3645 0.038744 CACCCAAGGTTCTGCCAGAT 59.961 55.000 0.00 0.00 40.61 2.90
3289 3686 9.650539 CTAATAATTCTCTCATATCACACAGGG 57.349 37.037 0.00 0.00 0.00 4.45
3333 3733 7.125053 GGGATCTTCTTCTCCTTCTTCTTCTTA 59.875 40.741 0.00 0.00 0.00 2.10
3340 3740 4.434195 ACTGGGATCTTCTTCTCCTTCTT 58.566 43.478 0.00 0.00 0.00 2.52
3346 3746 4.512484 CCAAGAACTGGGATCTTCTTCTC 58.488 47.826 5.04 0.00 42.17 2.87
3381 3781 6.850752 AACTTAGTTTTGTATGGGGATTGG 57.149 37.500 0.00 0.00 0.00 3.16
3501 5513 2.354305 GGCCATACTACGACCGCG 60.354 66.667 0.00 0.00 44.79 6.46
3522 5534 8.829612 GGTCATTGTCACATTTGAAAATTTTCT 58.170 29.630 26.73 8.61 37.56 2.52
3524 5536 8.503458 TGGTCATTGTCACATTTGAAAATTTT 57.497 26.923 2.28 2.28 37.56 1.82
3558 5570 2.356667 GTGGCTTTCCCCTCCCTG 59.643 66.667 0.00 0.00 0.00 4.45
3567 5579 2.741211 GTCCGTCCGGTGGCTTTC 60.741 66.667 0.00 0.00 36.47 2.62
3575 5587 3.173167 AACTTGGGTGTCCGTCCGG 62.173 63.158 0.00 0.00 35.24 5.14
3576 5588 1.959226 CAACTTGGGTGTCCGTCCG 60.959 63.158 0.00 0.00 35.24 4.79
3581 5596 2.858745 ACATACACAACTTGGGTGTCC 58.141 47.619 6.94 0.00 45.89 4.02
3582 5597 4.336993 TCAAACATACACAACTTGGGTGTC 59.663 41.667 6.94 0.00 45.89 3.67
3639 5654 0.608856 ATGTGGAAATGCACGCTCCA 60.609 50.000 8.76 8.76 36.89 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.