Multiple sequence alignment - TraesCS3A01G532600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G532600 chr3A 100.000 6985 0 0 1 6985 745518606 745511622 0.000000e+00 12899.0
1 TraesCS3A01G532600 chr3A 91.763 692 42 8 6298 6981 53292784 53292100 0.000000e+00 948.0
2 TraesCS3A01G532600 chr3A 91.754 667 49 3 6321 6981 725187352 725186686 0.000000e+00 922.0
3 TraesCS3A01G532600 chr3A 83.469 369 37 15 4625 4991 714080761 714081107 8.740000e-84 322.0
4 TraesCS3A01G532600 chr3B 99.119 2837 10 3 1533 4355 11576655 11573820 0.000000e+00 5086.0
5 TraesCS3A01G532600 chr3B 91.437 1308 95 9 4991 6296 828421109 828419817 0.000000e+00 1779.0
6 TraesCS3A01G532600 chr3B 91.479 1291 91 13 5012 6296 828764255 828765532 0.000000e+00 1757.0
7 TraesCS3A01G532600 chr3B 90.690 956 49 14 622 1537 828422059 828421104 0.000000e+00 1236.0
8 TraesCS3A01G532600 chr3B 89.749 956 58 14 622 1537 828763291 828764246 0.000000e+00 1186.0
9 TraesCS3A01G532600 chr3B 98.596 641 8 1 4355 4995 11573752 11573113 0.000000e+00 1133.0
10 TraesCS3A01G532600 chr3B 88.811 143 13 3 3724 3863 61280456 61280314 9.310000e-39 172.0
11 TraesCS3A01G532600 chr3B 100.000 28 0 0 2774 2801 167209191 167209164 1.300000e-02 52.8
12 TraesCS3A01G532600 chr3D 90.828 1570 90 23 2797 4355 16251180 16252706 0.000000e+00 2052.0
13 TraesCS3A01G532600 chr3D 90.099 1313 97 18 4991 6280 610805119 610803817 0.000000e+00 1674.0
14 TraesCS3A01G532600 chr3D 87.239 1199 82 30 369 1537 610806271 610805114 0.000000e+00 1301.0
15 TraesCS3A01G532600 chr3D 82.515 652 64 16 4344 4991 16253497 16254102 1.730000e-145 527.0
16 TraesCS3A01G532600 chr3D 82.362 652 65 22 4344 4991 16254233 16254838 8.030000e-144 521.0
17 TraesCS3A01G532600 chr3D 89.563 412 34 4 1532 1935 16249165 16249575 1.340000e-141 514.0
18 TraesCS3A01G532600 chr3D 82.055 652 67 16 4344 4991 16252761 16253366 1.740000e-140 510.0
19 TraesCS3A01G532600 chr3D 88.493 365 32 2 1964 2318 16249575 16249939 3.870000e-117 433.0
20 TraesCS3A01G532600 chr3D 87.702 309 22 4 2363 2657 16250095 16250401 5.190000e-91 346.0
21 TraesCS3A01G532600 chr3D 83.929 224 31 5 2365 2585 28366042 28366263 7.100000e-50 209.0
22 TraesCS3A01G532600 chr3D 83.929 224 31 5 2365 2585 28369424 28369645 7.100000e-50 209.0
23 TraesCS3A01G532600 chr3D 83.929 224 31 5 2365 2585 28375217 28375438 7.100000e-50 209.0
24 TraesCS3A01G532600 chr3D 94.737 76 4 0 4280 4355 16254103 16254178 1.230000e-22 119.0
25 TraesCS3A01G532600 chr3D 92.105 76 6 0 4280 4355 16253367 16253442 2.660000e-19 108.0
26 TraesCS3A01G532600 chr3D 97.778 45 0 1 1534 1578 28365870 28365913 7.510000e-10 76.8
27 TraesCS3A01G532600 chr3D 97.778 45 0 1 1534 1578 28369252 28369295 7.510000e-10 76.8
28 TraesCS3A01G532600 chr3D 97.778 45 0 1 1534 1578 28375045 28375088 7.510000e-10 76.8
29 TraesCS3A01G532600 chr1A 94.472 814 29 4 3543 4355 583868587 583869385 0.000000e+00 1240.0
30 TraesCS3A01G532600 chr1A 92.875 786 32 10 1537 2318 583863719 583864484 0.000000e+00 1120.0
31 TraesCS3A01G532600 chr1A 92.063 756 25 6 2797 3549 583866447 583867170 0.000000e+00 1031.0
32 TraesCS3A01G532600 chr1A 92.960 696 36 3 6298 6981 517644660 517643966 0.000000e+00 1002.0
33 TraesCS3A01G532600 chr1A 92.332 639 44 3 4355 4991 583863083 583863718 0.000000e+00 904.0
34 TraesCS3A01G532600 chr1A 92.175 639 44 4 4355 4991 583869453 583870087 0.000000e+00 898.0
35 TraesCS3A01G532600 chr1A 83.461 913 133 13 5074 5984 534051258 534050362 0.000000e+00 833.0
36 TraesCS3A01G532600 chr1A 92.018 451 21 3 2365 2801 583865944 583866393 2.770000e-173 619.0
37 TraesCS3A01G532600 chr1A 80.591 237 38 8 2427 2658 32857359 32857126 7.200000e-40 176.0
38 TraesCS3A01G532600 chr5A 93.103 696 40 2 6294 6981 606836051 606835356 0.000000e+00 1013.0
39 TraesCS3A01G532600 chr5A 91.403 663 47 2 6321 6981 623507053 623506399 0.000000e+00 900.0
40 TraesCS3A01G532600 chr5A 81.395 301 47 7 2365 2658 17145527 17145229 3.260000e-58 237.0
41 TraesCS3A01G532600 chr6A 92.837 698 40 6 6294 6981 581810755 581810058 0.000000e+00 1003.0
42 TraesCS3A01G532600 chr6A 91.329 692 41 6 6298 6981 224623837 224624517 0.000000e+00 928.0
43 TraesCS3A01G532600 chr6A 87.558 651 50 11 3709 4355 146553560 146552937 0.000000e+00 725.0
44 TraesCS3A01G532600 chr6A 94.400 375 20 1 3339 3713 146554088 146553715 6.080000e-160 575.0
45 TraesCS3A01G532600 chr6A 89.487 409 37 4 1532 1935 146556309 146555902 4.830000e-141 512.0
46 TraesCS3A01G532600 chr6A 87.397 365 34 5 1971 2323 146555899 146555535 6.520000e-110 409.0
47 TraesCS3A01G532600 chr6A 86.408 309 26 11 2365 2658 146555385 146555078 2.430000e-84 324.0
48 TraesCS3A01G532600 chr6A 94.366 142 8 0 2660 2801 146554415 146554274 1.180000e-52 219.0
49 TraesCS3A01G532600 chr6A 79.487 273 52 4 1216 1486 599831388 599831118 2.570000e-44 191.0
50 TraesCS3A01G532600 chrUn 91.454 667 51 3 6321 6981 33333170 33332504 0.000000e+00 911.0
51 TraesCS3A01G532600 chrUn 88.811 143 13 3 3724 3863 50955617 50955475 9.310000e-39 172.0
52 TraesCS3A01G532600 chrUn 96.774 31 1 0 2771 2801 402961265 402961295 1.300000e-02 52.8
53 TraesCS3A01G532600 chr2A 89.374 687 65 6 6298 6981 112625156 112624475 0.000000e+00 857.0
54 TraesCS3A01G532600 chr2A 75.553 904 191 25 5077 5966 174027294 174028181 1.080000e-112 418.0
55 TraesCS3A01G532600 chr2A 75.630 833 183 16 5077 5899 174245678 174246500 5.080000e-106 396.0
56 TraesCS3A01G532600 chr2A 90.000 130 13 0 2799 2928 563166251 563166122 1.200000e-37 169.0
57 TraesCS3A01G532600 chr1D 82.842 915 142 11 5074 5987 437000496 436999596 0.000000e+00 806.0
58 TraesCS3A01G532600 chr1B 82.842 915 141 10 5074 5987 592172843 592171944 0.000000e+00 806.0
59 TraesCS3A01G532600 chr1B 82.616 604 77 19 4399 4995 4040191 4040773 6.250000e-140 508.0
60 TraesCS3A01G532600 chr1B 77.616 822 151 23 686 1486 592173986 592173177 1.060000e-127 468.0
61 TraesCS3A01G532600 chr1B 85.915 213 26 3 4774 4986 606642240 606642032 2.540000e-54 224.0
62 TraesCS3A01G532600 chr4A 88.043 644 48 8 3219 3857 556087736 556087117 0.000000e+00 736.0
63 TraesCS3A01G532600 chr4A 91.111 405 33 2 3320 3722 152591398 152590995 4.760000e-151 545.0
64 TraesCS3A01G532600 chr4A 88.830 376 35 4 2797 3170 556088108 556087738 8.260000e-124 455.0
65 TraesCS3A01G532600 chr4A 86.626 329 38 4 1588 1910 152592622 152592294 6.660000e-95 359.0
66 TraesCS3A01G532600 chr4A 81.542 428 62 10 4568 4991 152578674 152578260 3.120000e-88 337.0
67 TraesCS3A01G532600 chr4A 83.333 366 37 12 3861 4205 152590625 152590263 4.070000e-82 316.0
68 TraesCS3A01G532600 chr4A 80.169 237 39 8 2427 2658 516354269 516354036 3.350000e-38 171.0
69 TraesCS3A01G532600 chr7A 92.162 421 28 4 3709 4126 335979810 335979392 2.170000e-164 590.0
70 TraesCS3A01G532600 chr7A 94.667 375 19 1 3339 3713 335980338 335979965 1.310000e-161 580.0
71 TraesCS3A01G532600 chr7A 84.305 223 30 4 4769 4991 576773061 576773278 5.490000e-51 213.0
72 TraesCS3A01G532600 chr7A 92.958 142 10 0 2660 2801 335980665 335980524 2.550000e-49 207.0
73 TraesCS3A01G532600 chr7A 84.314 153 23 1 4355 4506 335978572 335978420 1.570000e-31 148.0
74 TraesCS3A01G532600 chr7A 90.385 52 3 1 30 81 627163419 627163468 4.520000e-07 67.6
75 TraesCS3A01G532600 chr5B 90.148 406 31 5 3320 3717 9590595 9590191 2.890000e-143 520.0
76 TraesCS3A01G532600 chr5B 83.689 515 55 11 3861 4353 389338395 389337888 6.380000e-125 459.0
77 TraesCS3A01G532600 chr5B 85.047 321 35 5 1593 1910 9591769 9591459 1.460000e-81 315.0
78 TraesCS3A01G532600 chr5B 91.489 47 4 0 2612 2658 389339655 389339609 1.630000e-06 65.8
79 TraesCS3A01G532600 chr7D 82.623 610 80 17 4388 4991 41536992 41537581 3.740000e-142 516.0
80 TraesCS3A01G532600 chr7D 82.219 613 80 20 4387 4991 333685641 333686232 1.050000e-137 501.0
81 TraesCS3A01G532600 chr7D 82.379 227 34 5 4765 4991 563720553 563720773 7.150000e-45 193.0
82 TraesCS3A01G532600 chr7D 91.304 46 3 1 1531 1575 412470022 412469977 2.100000e-05 62.1
83 TraesCS3A01G532600 chr7B 88.945 398 43 1 3320 3717 278100148 278099752 2.260000e-134 490.0
84 TraesCS3A01G532600 chr7B 84.511 368 33 9 3859 4205 278099362 278098998 6.710000e-90 342.0
85 TraesCS3A01G532600 chr7B 84.112 321 44 6 1593 1910 278101331 278101015 3.170000e-78 303.0
86 TraesCS3A01G532600 chr7B 82.986 288 35 7 2383 2658 278100942 278100657 1.500000e-61 248.0
87 TraesCS3A01G532600 chr7B 87.958 191 23 0 4801 4991 87817837 87818027 7.050000e-55 226.0
88 TraesCS3A01G532600 chr7B 88.811 143 13 3 3724 3863 634209253 634209395 9.310000e-39 172.0
89 TraesCS3A01G532600 chr7B 95.122 41 2 0 1524 1564 605374750 605374710 1.630000e-06 65.8
90 TraesCS3A01G532600 chr2D 75.526 903 192 23 5077 5966 174324532 174325418 3.900000e-112 416.0
91 TraesCS3A01G532600 chr2D 88.889 81 8 1 5833 5912 174388362 174388442 1.600000e-16 99.0
92 TraesCS3A01G532600 chr2D 97.143 35 1 0 32 66 408344496 408344462 7.570000e-05 60.2
93 TraesCS3A01G532600 chr4B 84.153 366 53 5 4393 4753 166565161 166565526 4.010000e-92 350.0
94 TraesCS3A01G532600 chr2B 94.545 55 3 0 3659 3713 360199555 360199501 1.250000e-12 86.1
95 TraesCS3A01G532600 chr6B 100.000 29 0 0 33 61 720055887 720055915 4.000000e-03 54.7
96 TraesCS3A01G532600 chr6B 100.000 29 0 0 33 61 720101337 720101365 4.000000e-03 54.7
97 TraesCS3A01G532600 chr6B 100.000 29 0 0 33 61 720141787 720141815 4.000000e-03 54.7
98 TraesCS3A01G532600 chr6D 96.774 31 1 0 2771 2801 355030521 355030551 1.300000e-02 52.8
99 TraesCS3A01G532600 chr4D 100.000 28 0 0 2774 2801 71390259 71390232 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G532600 chr3A 745511622 745518606 6984 True 12899.000000 12899 100.000000 1 6985 1 chr3A.!!$R3 6984
1 TraesCS3A01G532600 chr3A 53292100 53292784 684 True 948.000000 948 91.763000 6298 6981 1 chr3A.!!$R1 683
2 TraesCS3A01G532600 chr3A 725186686 725187352 666 True 922.000000 922 91.754000 6321 6981 1 chr3A.!!$R2 660
3 TraesCS3A01G532600 chr3B 11573113 11576655 3542 True 3109.500000 5086 98.857500 1533 4995 2 chr3B.!!$R3 3462
4 TraesCS3A01G532600 chr3B 828419817 828422059 2242 True 1507.500000 1779 91.063500 622 6296 2 chr3B.!!$R4 5674
5 TraesCS3A01G532600 chr3B 828763291 828765532 2241 False 1471.500000 1757 90.614000 622 6296 2 chr3B.!!$F1 5674
6 TraesCS3A01G532600 chr3D 610803817 610806271 2454 True 1487.500000 1674 88.669000 369 6280 2 chr3D.!!$R1 5911
7 TraesCS3A01G532600 chr3D 16249165 16254838 5673 False 570.000000 2052 87.817778 1532 4991 9 chr3D.!!$F1 3459
8 TraesCS3A01G532600 chr1A 517643966 517644660 694 True 1002.000000 1002 92.960000 6298 6981 1 chr1A.!!$R2 683
9 TraesCS3A01G532600 chr1A 583863083 583870087 7004 False 968.666667 1240 92.655833 1537 4991 6 chr1A.!!$F1 3454
10 TraesCS3A01G532600 chr1A 534050362 534051258 896 True 833.000000 833 83.461000 5074 5984 1 chr1A.!!$R3 910
11 TraesCS3A01G532600 chr5A 606835356 606836051 695 True 1013.000000 1013 93.103000 6294 6981 1 chr5A.!!$R2 687
12 TraesCS3A01G532600 chr5A 623506399 623507053 654 True 900.000000 900 91.403000 6321 6981 1 chr5A.!!$R3 660
13 TraesCS3A01G532600 chr6A 581810058 581810755 697 True 1003.000000 1003 92.837000 6294 6981 1 chr6A.!!$R1 687
14 TraesCS3A01G532600 chr6A 224623837 224624517 680 False 928.000000 928 91.329000 6298 6981 1 chr6A.!!$F1 683
15 TraesCS3A01G532600 chr6A 146552937 146556309 3372 True 460.666667 725 89.936000 1532 4355 6 chr6A.!!$R3 2823
16 TraesCS3A01G532600 chrUn 33332504 33333170 666 True 911.000000 911 91.454000 6321 6981 1 chrUn.!!$R1 660
17 TraesCS3A01G532600 chr2A 112624475 112625156 681 True 857.000000 857 89.374000 6298 6981 1 chr2A.!!$R1 683
18 TraesCS3A01G532600 chr2A 174027294 174028181 887 False 418.000000 418 75.553000 5077 5966 1 chr2A.!!$F1 889
19 TraesCS3A01G532600 chr2A 174245678 174246500 822 False 396.000000 396 75.630000 5077 5899 1 chr2A.!!$F2 822
20 TraesCS3A01G532600 chr1D 436999596 437000496 900 True 806.000000 806 82.842000 5074 5987 1 chr1D.!!$R1 913
21 TraesCS3A01G532600 chr1B 592171944 592173986 2042 True 637.000000 806 80.229000 686 5987 2 chr1B.!!$R2 5301
22 TraesCS3A01G532600 chr1B 4040191 4040773 582 False 508.000000 508 82.616000 4399 4995 1 chr1B.!!$F1 596
23 TraesCS3A01G532600 chr4A 556087117 556088108 991 True 595.500000 736 88.436500 2797 3857 2 chr4A.!!$R4 1060
24 TraesCS3A01G532600 chr4A 152590263 152592622 2359 True 406.666667 545 87.023333 1588 4205 3 chr4A.!!$R3 2617
25 TraesCS3A01G532600 chr7A 335978420 335980665 2245 True 381.250000 590 91.025250 2660 4506 4 chr7A.!!$R1 1846
26 TraesCS3A01G532600 chr5B 9590191 9591769 1578 True 417.500000 520 87.597500 1593 3717 2 chr5B.!!$R1 2124
27 TraesCS3A01G532600 chr5B 389337888 389339655 1767 True 262.400000 459 87.589000 2612 4353 2 chr5B.!!$R2 1741
28 TraesCS3A01G532600 chr7D 41536992 41537581 589 False 516.000000 516 82.623000 4388 4991 1 chr7D.!!$F1 603
29 TraesCS3A01G532600 chr7D 333685641 333686232 591 False 501.000000 501 82.219000 4387 4991 1 chr7D.!!$F2 604
30 TraesCS3A01G532600 chr7B 278098998 278101331 2333 True 345.750000 490 85.138500 1593 4205 4 chr7B.!!$R2 2612
31 TraesCS3A01G532600 chr2D 174324532 174325418 886 False 416.000000 416 75.526000 5077 5966 1 chr2D.!!$F1 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.036199 CTCAGCAGAAAGGCAGAGCT 60.036 55.000 0.0 0.0 39.93 4.09 F
439 440 0.173481 GCACTGACTATGGCGTCTGA 59.827 55.000 5.1 0.0 36.65 3.27 F
1203 1245 0.096281 CGTTTGTGACAAGTGTGCGT 59.904 50.000 0.0 0.0 0.00 5.24 F
2588 4285 0.391130 GCGCCCTCATAGTTGTGTCA 60.391 55.000 0.0 0.0 0.00 3.58 F
2589 4286 1.743772 GCGCCCTCATAGTTGTGTCAT 60.744 52.381 0.0 0.0 0.00 3.06 F
2590 4287 2.632377 CGCCCTCATAGTTGTGTCATT 58.368 47.619 0.0 0.0 0.00 2.57 F
2591 4288 3.009723 CGCCCTCATAGTTGTGTCATTT 58.990 45.455 0.0 0.0 0.00 2.32 F
2592 4289 3.063997 CGCCCTCATAGTTGTGTCATTTC 59.936 47.826 0.0 0.0 0.00 2.17 F
4945 11450 2.905085 TGTTGTGGGACTAATTACGGGA 59.095 45.455 0.0 0.0 0.00 5.14 F
5761 12281 0.618968 AGGTTCGCTGAGGGGATCTT 60.619 55.000 0.0 0.0 34.41 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1245 0.038251 AAGCGAGCGAATCAGTCACA 60.038 50.000 0.00 0.00 0.00 3.58 R
1657 1914 4.080863 ACAAGGGAATCGAGCTTCTATTGT 60.081 41.667 12.36 12.36 33.24 2.71 R
2601 4298 5.438761 AACTTCTATGTCAACTTGGCAAC 57.561 39.130 0.00 0.00 34.67 4.17 R
3781 7994 3.217626 AGTATTTTGCTGGCAGCCTATC 58.782 45.455 34.58 19.57 41.51 2.08 R
4539 10304 4.479993 GCTCCTGCACTCGGCCAT 62.480 66.667 2.24 0.00 43.89 4.40 R
4708 11212 1.134788 GTCCCGATCCTCAAATCACGT 60.135 52.381 0.00 0.00 0.00 4.49 R
4945 11450 9.768662 ATCAAACAAAAACTTTCTTAGATGCAT 57.231 25.926 0.00 0.00 0.00 3.96 R
4995 11500 4.020839 GTGGCAAGGTGGAAGTAGTACTAA 60.021 45.833 3.61 0.00 0.00 2.24 R
5912 12432 0.105224 TCATTACGGTATGTGGGGCG 59.895 55.000 0.00 0.00 0.00 6.13 R
6797 13372 1.103803 GGAGCGTGTAGACATCCTGA 58.896 55.000 4.47 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.088104 TATAGCTGGCTGGTGCTACT 57.912 50.000 6.33 0.00 43.38 2.57
22 23 0.984230 TAGCTGGCTGGTGCTACTTT 59.016 50.000 6.33 0.00 40.35 2.66
23 24 0.607489 AGCTGGCTGGTGCTACTTTG 60.607 55.000 0.00 0.00 37.81 2.77
24 25 0.890996 GCTGGCTGGTGCTACTTTGT 60.891 55.000 0.00 0.00 39.59 2.83
25 26 1.609208 CTGGCTGGTGCTACTTTGTT 58.391 50.000 0.00 0.00 39.59 2.83
26 27 2.778299 CTGGCTGGTGCTACTTTGTTA 58.222 47.619 0.00 0.00 39.59 2.41
27 28 3.146066 CTGGCTGGTGCTACTTTGTTAA 58.854 45.455 0.00 0.00 39.59 2.01
28 29 2.882137 TGGCTGGTGCTACTTTGTTAAC 59.118 45.455 0.00 0.00 39.59 2.01
30 31 2.882137 GCTGGTGCTACTTTGTTAACCA 59.118 45.455 2.48 0.00 36.33 3.67
31 32 3.506067 GCTGGTGCTACTTTGTTAACCAT 59.494 43.478 2.48 0.00 37.10 3.55
32 33 4.379499 GCTGGTGCTACTTTGTTAACCATC 60.379 45.833 2.48 0.00 37.10 3.51
33 34 4.980573 TGGTGCTACTTTGTTAACCATCT 58.019 39.130 2.48 0.00 32.88 2.90
34 35 6.116711 TGGTGCTACTTTGTTAACCATCTA 57.883 37.500 2.48 0.00 32.88 1.98
36 37 6.171213 GGTGCTACTTTGTTAACCATCTACT 58.829 40.000 2.48 0.00 0.00 2.57
39 40 5.816258 GCTACTTTGTTAACCATCTACTCCC 59.184 44.000 2.48 0.00 0.00 4.30
40 41 6.351966 GCTACTTTGTTAACCATCTACTCCCT 60.352 42.308 2.48 0.00 0.00 4.20
42 43 4.730949 TTGTTAACCATCTACTCCCTCG 57.269 45.455 2.48 0.00 0.00 4.63
44 45 3.029570 GTTAACCATCTACTCCCTCGGT 58.970 50.000 0.00 0.00 0.00 4.69
45 46 1.777941 AACCATCTACTCCCTCGGTC 58.222 55.000 0.00 0.00 0.00 4.79
50 51 1.526315 TCTACTCCCTCGGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
51 52 1.854939 TCTACTCCCTCGGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
52 53 2.449730 TCTACTCCCTCGGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
53 54 3.659195 TCTACTCCCTCGGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
55 56 4.687262 ACTCCCTCGGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
57 58 5.408824 ACTCCCTCGGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
58 59 5.847817 ACTCCCTCGGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
59 60 6.013639 ACTCCCTCGGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
60 61 4.941873 CCCTCGGTCCCATAATATAAAAGC 59.058 45.833 0.00 0.00 0.00 3.51
61 62 5.514136 CCCTCGGTCCCATAATATAAAAGCA 60.514 44.000 0.00 0.00 0.00 3.91
62 63 6.180472 CCTCGGTCCCATAATATAAAAGCAT 58.820 40.000 0.00 0.00 0.00 3.79
63 64 6.659242 CCTCGGTCCCATAATATAAAAGCATT 59.341 38.462 0.00 0.00 0.00 3.56
64 65 7.176690 CCTCGGTCCCATAATATAAAAGCATTT 59.823 37.037 0.00 0.00 42.41 2.32
90 91 8.997621 TTTTCACACTAGTGTATTATGAGGTC 57.002 34.615 27.48 0.00 46.01 3.85
91 92 6.373186 TCACACTAGTGTATTATGAGGTCG 57.627 41.667 27.48 11.17 46.01 4.79
92 93 5.884232 TCACACTAGTGTATTATGAGGTCGT 59.116 40.000 27.48 0.00 46.01 4.34
93 94 6.037940 TCACACTAGTGTATTATGAGGTCGTC 59.962 42.308 27.48 0.00 46.01 4.20
94 95 5.007430 ACACTAGTGTATTATGAGGTCGTCG 59.993 44.000 26.91 0.00 42.90 5.12
97 98 2.025898 TGTATTATGAGGTCGTCGCCA 58.974 47.619 8.15 0.00 0.00 5.69
98 99 2.626266 TGTATTATGAGGTCGTCGCCAT 59.374 45.455 8.15 2.59 0.00 4.40
99 100 3.822167 TGTATTATGAGGTCGTCGCCATA 59.178 43.478 8.15 1.79 0.00 2.74
100 101 4.461431 TGTATTATGAGGTCGTCGCCATAT 59.539 41.667 8.15 4.87 0.00 1.78
101 102 4.537135 ATTATGAGGTCGTCGCCATATT 57.463 40.909 8.15 0.00 0.00 1.28
102 103 2.910688 ATGAGGTCGTCGCCATATTT 57.089 45.000 8.15 0.00 0.00 1.40
103 104 1.934589 TGAGGTCGTCGCCATATTTG 58.065 50.000 8.15 0.00 0.00 2.32
104 105 1.478916 TGAGGTCGTCGCCATATTTGA 59.521 47.619 8.15 0.00 0.00 2.69
105 106 2.128035 GAGGTCGTCGCCATATTTGAG 58.872 52.381 8.15 0.00 0.00 3.02
107 108 1.217882 GTCGTCGCCATATTTGAGGG 58.782 55.000 0.00 0.00 0.00 4.30
108 109 0.828022 TCGTCGCCATATTTGAGGGT 59.172 50.000 0.00 0.00 0.00 4.34
109 110 1.208535 TCGTCGCCATATTTGAGGGTT 59.791 47.619 0.00 0.00 0.00 4.11
110 111 2.431419 TCGTCGCCATATTTGAGGGTTA 59.569 45.455 0.00 0.00 0.00 2.85
112 113 3.139077 GTCGCCATATTTGAGGGTTAGG 58.861 50.000 0.00 0.00 0.00 2.69
113 114 3.042682 TCGCCATATTTGAGGGTTAGGA 58.957 45.455 0.00 0.00 0.00 2.94
114 115 3.071023 TCGCCATATTTGAGGGTTAGGAG 59.929 47.826 0.00 0.00 0.00 3.69
115 116 3.071023 CGCCATATTTGAGGGTTAGGAGA 59.929 47.826 0.00 0.00 0.00 3.71
116 117 4.390264 GCCATATTTGAGGGTTAGGAGAC 58.610 47.826 0.00 0.00 0.00 3.36
117 118 4.141482 GCCATATTTGAGGGTTAGGAGACA 60.141 45.833 0.00 0.00 0.00 3.41
118 119 5.456763 GCCATATTTGAGGGTTAGGAGACAT 60.457 44.000 0.00 0.00 0.00 3.06
119 120 6.234177 CCATATTTGAGGGTTAGGAGACATC 58.766 44.000 0.00 0.00 0.00 3.06
120 121 6.183361 CCATATTTGAGGGTTAGGAGACATCA 60.183 42.308 0.00 0.00 0.00 3.07
122 123 2.467880 TGAGGGTTAGGAGACATCACC 58.532 52.381 0.00 0.00 0.00 4.02
123 124 2.044492 TGAGGGTTAGGAGACATCACCT 59.956 50.000 3.27 3.27 40.15 4.00
124 125 3.271225 TGAGGGTTAGGAGACATCACCTA 59.729 47.826 1.33 1.33 38.01 3.08
125 126 4.078571 TGAGGGTTAGGAGACATCACCTAT 60.079 45.833 5.99 0.00 38.63 2.57
126 127 5.135533 TGAGGGTTAGGAGACATCACCTATA 59.864 44.000 5.99 0.00 38.63 1.31
127 128 6.039415 AGGGTTAGGAGACATCACCTATAA 57.961 41.667 5.99 0.00 38.63 0.98
128 129 6.635021 AGGGTTAGGAGACATCACCTATAAT 58.365 40.000 5.99 0.00 38.63 1.28
129 130 7.776745 AGGGTTAGGAGACATCACCTATAATA 58.223 38.462 5.99 0.00 38.63 0.98
130 131 8.410623 AGGGTTAGGAGACATCACCTATAATAT 58.589 37.037 5.99 0.00 38.63 1.28
131 132 9.710818 GGGTTAGGAGACATCACCTATAATATA 57.289 37.037 5.99 0.00 38.63 0.86
136 137 7.343316 AGGAGACATCACCTATAATATAGTGCC 59.657 40.741 6.55 0.00 35.12 5.01
138 139 8.615360 AGACATCACCTATAATATAGTGCCAT 57.385 34.615 6.55 0.00 0.00 4.40
139 140 8.481314 AGACATCACCTATAATATAGTGCCATG 58.519 37.037 6.55 5.71 0.00 3.66
140 141 8.150827 ACATCACCTATAATATAGTGCCATGT 57.849 34.615 6.55 6.21 0.00 3.21
141 142 9.267071 ACATCACCTATAATATAGTGCCATGTA 57.733 33.333 6.55 0.00 30.40 2.29
142 143 9.755804 CATCACCTATAATATAGTGCCATGTAG 57.244 37.037 6.55 0.00 0.00 2.74
143 144 8.895141 TCACCTATAATATAGTGCCATGTAGT 57.105 34.615 6.55 0.00 0.00 2.73
144 145 9.984590 TCACCTATAATATAGTGCCATGTAGTA 57.015 33.333 6.55 0.00 0.00 1.82
153 154 4.033709 AGTGCCATGTAGTACAGAATCCT 58.966 43.478 9.25 0.00 0.00 3.24
156 157 3.318275 GCCATGTAGTACAGAATCCTCGA 59.682 47.826 9.25 0.00 0.00 4.04
157 158 4.557695 GCCATGTAGTACAGAATCCTCGAG 60.558 50.000 9.25 5.13 0.00 4.04
158 159 4.822350 CCATGTAGTACAGAATCCTCGAGA 59.178 45.833 15.71 0.00 0.00 4.04
160 161 5.814764 TGTAGTACAGAATCCTCGAGAAC 57.185 43.478 15.71 2.05 0.00 3.01
161 162 5.250982 TGTAGTACAGAATCCTCGAGAACA 58.749 41.667 15.71 0.00 0.00 3.18
162 163 5.886474 TGTAGTACAGAATCCTCGAGAACAT 59.114 40.000 15.71 0.00 0.00 2.71
163 164 5.255710 AGTACAGAATCCTCGAGAACATG 57.744 43.478 15.71 8.41 0.00 3.21
164 165 4.950475 AGTACAGAATCCTCGAGAACATGA 59.050 41.667 15.71 1.88 0.00 3.07
165 166 4.116747 ACAGAATCCTCGAGAACATGAC 57.883 45.455 15.71 1.95 0.00 3.06
167 168 3.017442 AGAATCCTCGAGAACATGACGA 58.983 45.455 15.71 0.00 34.90 4.20
168 169 3.634448 AGAATCCTCGAGAACATGACGAT 59.366 43.478 15.71 2.17 35.58 3.73
169 170 2.851805 TCCTCGAGAACATGACGATG 57.148 50.000 15.71 2.96 35.58 3.84
171 172 1.405463 CCTCGAGAACATGACGATGGA 59.595 52.381 15.71 0.00 35.58 3.41
173 174 3.253432 CCTCGAGAACATGACGATGGATA 59.747 47.826 15.71 0.00 35.58 2.59
174 175 4.471373 CTCGAGAACATGACGATGGATAG 58.529 47.826 6.58 0.00 35.58 2.08
176 177 3.253432 CGAGAACATGACGATGGATAGGA 59.747 47.826 0.00 0.00 33.39 2.94
177 178 4.551388 GAGAACATGACGATGGATAGGAC 58.449 47.826 0.00 0.00 33.39 3.85
178 179 3.004839 AGAACATGACGATGGATAGGACG 59.995 47.826 0.00 0.00 33.39 4.79
179 180 1.613925 ACATGACGATGGATAGGACGG 59.386 52.381 0.00 0.00 33.39 4.79
180 181 1.613925 CATGACGATGGATAGGACGGT 59.386 52.381 0.00 0.00 0.00 4.83
181 182 1.315690 TGACGATGGATAGGACGGTC 58.684 55.000 0.00 0.00 0.00 4.79
182 183 0.597072 GACGATGGATAGGACGGTCC 59.403 60.000 19.61 19.61 36.58 4.46
184 185 0.314302 CGATGGATAGGACGGTCCAC 59.686 60.000 27.87 17.65 46.55 4.02
185 186 1.410004 GATGGATAGGACGGTCCACA 58.590 55.000 27.87 19.83 46.55 4.17
187 188 0.251877 TGGATAGGACGGTCCACACA 60.252 55.000 27.87 17.48 39.51 3.72
188 189 0.899720 GGATAGGACGGTCCACACAA 59.100 55.000 27.87 8.97 39.61 3.33
189 190 1.134788 GGATAGGACGGTCCACACAAG 60.135 57.143 27.87 0.00 39.61 3.16
190 191 0.902531 ATAGGACGGTCCACACAAGG 59.097 55.000 27.87 0.00 39.61 3.61
191 192 1.823169 TAGGACGGTCCACACAAGGC 61.823 60.000 27.87 0.00 39.61 4.35
192 193 3.041940 GACGGTCCACACAAGGCG 61.042 66.667 0.00 0.00 0.00 5.52
195 196 4.947147 GGTCCACACAAGGCGGCA 62.947 66.667 13.08 0.00 0.00 5.69
198 199 3.357079 CCACACAAGGCGGCAGAC 61.357 66.667 13.08 0.00 0.00 3.51
199 200 3.357079 CACACAAGGCGGCAGACC 61.357 66.667 13.08 0.00 0.00 3.85
200 201 3.560251 ACACAAGGCGGCAGACCT 61.560 61.111 13.08 0.00 40.02 3.85
203 204 2.032528 CAAGGCGGCAGACCTTCA 59.967 61.111 13.08 0.00 44.35 3.02
204 205 1.377725 CAAGGCGGCAGACCTTCAT 60.378 57.895 13.08 0.00 44.35 2.57
205 206 0.107703 CAAGGCGGCAGACCTTCATA 60.108 55.000 13.08 0.00 44.35 2.15
206 207 0.618458 AAGGCGGCAGACCTTCATAA 59.382 50.000 13.08 0.00 44.35 1.90
207 208 0.107654 AGGCGGCAGACCTTCATAAC 60.108 55.000 13.08 0.00 31.87 1.89
208 209 0.392461 GGCGGCAGACCTTCATAACA 60.392 55.000 3.07 0.00 0.00 2.41
209 210 1.448985 GCGGCAGACCTTCATAACAA 58.551 50.000 0.00 0.00 0.00 2.83
210 211 1.130561 GCGGCAGACCTTCATAACAAC 59.869 52.381 0.00 0.00 0.00 3.32
211 212 2.699954 CGGCAGACCTTCATAACAACT 58.300 47.619 0.00 0.00 0.00 3.16
212 213 3.857052 CGGCAGACCTTCATAACAACTA 58.143 45.455 0.00 0.00 0.00 2.24
214 215 4.620803 CGGCAGACCTTCATAACAACTAGT 60.621 45.833 0.00 0.00 0.00 2.57
215 216 5.393787 CGGCAGACCTTCATAACAACTAGTA 60.394 44.000 0.00 0.00 0.00 1.82
216 217 6.043411 GGCAGACCTTCATAACAACTAGTAG 58.957 44.000 0.00 0.00 0.00 2.57
218 219 6.628398 GCAGACCTTCATAACAACTAGTAGCT 60.628 42.308 0.00 0.00 0.00 3.32
222 223 6.663953 ACCTTCATAACAACTAGTAGCTCTCA 59.336 38.462 0.00 0.00 0.00 3.27
223 224 7.147983 ACCTTCATAACAACTAGTAGCTCTCAG 60.148 40.741 0.00 0.00 0.00 3.35
224 225 6.137794 TCATAACAACTAGTAGCTCTCAGC 57.862 41.667 0.00 0.00 42.84 4.26
227 228 3.691575 ACAACTAGTAGCTCTCAGCAGA 58.308 45.455 0.00 0.00 45.56 4.26
229 230 4.524714 ACAACTAGTAGCTCTCAGCAGAAA 59.475 41.667 0.00 0.00 45.56 2.52
235 236 0.036577 GCTCTCAGCAGAAAGGCAGA 60.037 55.000 0.00 0.00 41.89 4.26
236 237 2.008045 GCTCTCAGCAGAAAGGCAGAG 61.008 57.143 0.00 0.00 45.56 3.35
237 238 0.036577 TCTCAGCAGAAAGGCAGAGC 60.037 55.000 3.09 0.00 44.33 4.09
238 239 0.036199 CTCAGCAGAAAGGCAGAGCT 60.036 55.000 0.00 0.00 39.93 4.09
239 240 1.206610 CTCAGCAGAAAGGCAGAGCTA 59.793 52.381 0.00 0.00 39.93 3.32
240 241 1.625315 TCAGCAGAAAGGCAGAGCTAA 59.375 47.619 0.00 0.00 35.83 3.09
242 243 1.349026 AGCAGAAAGGCAGAGCTAACA 59.651 47.619 0.00 0.00 35.83 2.41
243 244 2.026449 AGCAGAAAGGCAGAGCTAACAT 60.026 45.455 0.00 0.00 35.83 2.71
244 245 2.097142 GCAGAAAGGCAGAGCTAACATG 59.903 50.000 0.00 0.00 0.00 3.21
245 246 2.681848 CAGAAAGGCAGAGCTAACATGG 59.318 50.000 0.00 0.00 0.00 3.66
247 248 0.394899 AAGGCAGAGCTAACATGGGC 60.395 55.000 0.00 0.00 0.00 5.36
248 249 2.182842 GGCAGAGCTAACATGGGCG 61.183 63.158 0.00 0.00 0.00 6.13
249 250 1.153369 GCAGAGCTAACATGGGCGA 60.153 57.895 0.00 0.00 0.00 5.54
250 251 0.533755 GCAGAGCTAACATGGGCGAT 60.534 55.000 0.00 0.00 0.00 4.58
251 252 1.270305 GCAGAGCTAACATGGGCGATA 60.270 52.381 0.00 0.00 0.00 2.92
253 254 2.802816 CAGAGCTAACATGGGCGATAAC 59.197 50.000 0.00 0.00 0.00 1.89
254 255 2.434336 AGAGCTAACATGGGCGATAACA 59.566 45.455 0.00 0.00 0.00 2.41
255 256 3.118408 AGAGCTAACATGGGCGATAACAA 60.118 43.478 0.00 0.00 0.00 2.83
258 259 1.091537 AACATGGGCGATAACAACCG 58.908 50.000 0.00 0.00 0.00 4.44
264 265 1.226018 GCGATAACAACCGCTGTGC 60.226 57.895 0.00 0.00 46.96 4.57
266 267 1.635844 CGATAACAACCGCTGTGCTA 58.364 50.000 0.00 0.00 38.67 3.49
268 269 2.607635 CGATAACAACCGCTGTGCTATT 59.392 45.455 0.00 0.00 38.67 1.73
269 270 3.063452 CGATAACAACCGCTGTGCTATTT 59.937 43.478 0.00 0.00 38.67 1.40
270 271 2.704725 AACAACCGCTGTGCTATTTG 57.295 45.000 0.00 0.00 38.67 2.32
272 273 1.953686 ACAACCGCTGTGCTATTTGTT 59.046 42.857 0.00 0.00 36.69 2.83
273 274 2.287547 ACAACCGCTGTGCTATTTGTTG 60.288 45.455 0.00 0.00 36.69 3.33
274 275 0.240945 ACCGCTGTGCTATTTGTTGC 59.759 50.000 0.00 0.00 0.00 4.17
275 276 0.240678 CCGCTGTGCTATTTGTTGCA 59.759 50.000 0.00 0.00 36.79 4.08
276 277 1.135315 CCGCTGTGCTATTTGTTGCAT 60.135 47.619 0.00 0.00 41.45 3.96
277 278 2.179589 CGCTGTGCTATTTGTTGCATC 58.820 47.619 0.00 0.00 41.45 3.91
278 279 2.159476 CGCTGTGCTATTTGTTGCATCT 60.159 45.455 0.00 0.00 41.45 2.90
281 282 4.659088 CTGTGCTATTTGTTGCATCTGAG 58.341 43.478 0.00 0.00 41.45 3.35
282 283 4.074259 TGTGCTATTTGTTGCATCTGAGT 58.926 39.130 0.00 0.00 41.45 3.41
285 286 5.352569 GTGCTATTTGTTGCATCTGAGTAGT 59.647 40.000 0.00 0.00 41.45 2.73
286 287 6.535150 GTGCTATTTGTTGCATCTGAGTAGTA 59.465 38.462 0.00 0.00 41.45 1.82
287 288 7.064609 GTGCTATTTGTTGCATCTGAGTAGTAA 59.935 37.037 0.00 0.00 41.45 2.24
288 289 7.064609 TGCTATTTGTTGCATCTGAGTAGTAAC 59.935 37.037 0.00 0.00 33.94 2.50
292 293 6.968131 TGTTGCATCTGAGTAGTAACATTC 57.032 37.500 6.50 0.00 0.00 2.67
294 295 7.836842 TGTTGCATCTGAGTAGTAACATTCTA 58.163 34.615 6.50 0.00 0.00 2.10
296 297 7.646548 TGCATCTGAGTAGTAACATTCTACT 57.353 36.000 5.47 5.47 46.99 2.57
297 298 7.484140 TGCATCTGAGTAGTAACATTCTACTG 58.516 38.462 9.80 0.00 45.18 2.74
298 299 6.419413 GCATCTGAGTAGTAACATTCTACTGC 59.581 42.308 9.80 4.94 45.18 4.40
299 300 7.484140 CATCTGAGTAGTAACATTCTACTGCA 58.516 38.462 9.80 7.36 45.18 4.41
300 301 7.462571 TCTGAGTAGTAACATTCTACTGCAA 57.537 36.000 9.80 0.00 45.18 4.08
301 302 7.539436 TCTGAGTAGTAACATTCTACTGCAAG 58.461 38.462 9.80 5.84 45.18 4.01
302 303 7.393515 TCTGAGTAGTAACATTCTACTGCAAGA 59.606 37.037 9.80 7.58 45.18 3.02
303 304 7.539436 TGAGTAGTAACATTCTACTGCAAGAG 58.461 38.462 9.80 0.00 45.18 2.85
306 307 9.021807 AGTAGTAACATTCTACTGCAAGAGTAA 57.978 33.333 5.05 0.00 44.04 2.24
308 309 8.934507 AGTAACATTCTACTGCAAGAGTAATC 57.065 34.615 0.00 0.00 36.69 1.75
309 310 7.982354 AGTAACATTCTACTGCAAGAGTAATCC 59.018 37.037 0.00 0.00 36.69 3.01
310 311 5.352284 ACATTCTACTGCAAGAGTAATCCG 58.648 41.667 0.00 0.00 36.69 4.18
311 312 5.105310 ACATTCTACTGCAAGAGTAATCCGT 60.105 40.000 0.00 0.00 36.69 4.69
312 313 5.401531 TTCTACTGCAAGAGTAATCCGTT 57.598 39.130 0.00 0.00 36.69 4.44
313 314 5.401531 TCTACTGCAAGAGTAATCCGTTT 57.598 39.130 0.00 0.00 36.69 3.60
316 317 4.890088 ACTGCAAGAGTAATCCGTTTGTA 58.110 39.130 0.00 0.00 37.43 2.41
317 318 5.302360 ACTGCAAGAGTAATCCGTTTGTAA 58.698 37.500 0.00 0.00 37.43 2.41
318 319 5.938125 ACTGCAAGAGTAATCCGTTTGTAAT 59.062 36.000 0.00 0.00 37.43 1.89
320 321 7.769044 ACTGCAAGAGTAATCCGTTTGTAATAT 59.231 33.333 0.00 0.00 37.43 1.28
321 322 8.500753 TGCAAGAGTAATCCGTTTGTAATATT 57.499 30.769 0.00 0.00 0.00 1.28
342 343 9.797556 AATATTATTTTAACCTTCCGTTGCTTC 57.202 29.630 0.00 0.00 35.79 3.86
343 344 6.887626 TTATTTTAACCTTCCGTTGCTTCT 57.112 33.333 0.00 0.00 35.79 2.85
344 345 5.784578 ATTTTAACCTTCCGTTGCTTCTT 57.215 34.783 0.00 0.00 35.79 2.52
345 346 4.823790 TTTAACCTTCCGTTGCTTCTTC 57.176 40.909 0.00 0.00 35.79 2.87
349 350 2.357952 ACCTTCCGTTGCTTCTTCAAAC 59.642 45.455 0.00 0.00 0.00 2.93
351 352 1.314730 TCCGTTGCTTCTTCAAACCC 58.685 50.000 0.00 0.00 0.00 4.11
353 354 1.266989 CCGTTGCTTCTTCAAACCCTC 59.733 52.381 0.00 0.00 0.00 4.30
355 356 2.224314 CGTTGCTTCTTCAAACCCTCTC 59.776 50.000 0.00 0.00 0.00 3.20
356 357 3.481453 GTTGCTTCTTCAAACCCTCTCT 58.519 45.455 0.00 0.00 0.00 3.10
357 358 3.409026 TGCTTCTTCAAACCCTCTCTC 57.591 47.619 0.00 0.00 0.00 3.20
359 360 3.007398 TGCTTCTTCAAACCCTCTCTCTC 59.993 47.826 0.00 0.00 0.00 3.20
360 361 3.260632 GCTTCTTCAAACCCTCTCTCTCT 59.739 47.826 0.00 0.00 0.00 3.10
364 365 5.615289 TCTTCAAACCCTCTCTCTCTTTTG 58.385 41.667 0.00 0.00 0.00 2.44
368 369 4.566426 AACCCTCTCTCTCTTTTGATGG 57.434 45.455 0.00 0.00 0.00 3.51
370 371 3.913163 ACCCTCTCTCTCTTTTGATGGTT 59.087 43.478 0.00 0.00 0.00 3.67
371 372 5.094387 ACCCTCTCTCTCTTTTGATGGTTA 58.906 41.667 0.00 0.00 0.00 2.85
373 374 6.044404 ACCCTCTCTCTCTTTTGATGGTTAAA 59.956 38.462 0.00 0.00 0.00 1.52
408 409 2.238521 CTTGCCTGCCAAGTTCCTTAA 58.761 47.619 0.00 0.00 44.74 1.85
410 411 2.888212 TGCCTGCCAAGTTCCTTAATT 58.112 42.857 0.00 0.00 0.00 1.40
411 412 4.040936 TGCCTGCCAAGTTCCTTAATTA 57.959 40.909 0.00 0.00 0.00 1.40
429 430 1.913778 TAGGAACGTGGCACTGACTA 58.086 50.000 16.72 9.66 0.00 2.59
437 438 1.257750 TGGCACTGACTATGGCGTCT 61.258 55.000 0.00 0.00 45.25 4.18
438 439 0.807667 GGCACTGACTATGGCGTCTG 60.808 60.000 0.00 0.00 38.39 3.51
439 440 0.173481 GCACTGACTATGGCGTCTGA 59.827 55.000 5.10 0.00 36.65 3.27
449 450 4.645136 ACTATGGCGTCTGATTGACTAAGA 59.355 41.667 0.00 0.00 43.25 2.10
452 453 3.850657 GCGTCTGATTGACTAAGATGC 57.149 47.619 0.78 0.78 43.51 3.91
456 457 4.517285 GTCTGATTGACTAAGATGCCCAA 58.483 43.478 0.00 0.00 42.21 4.12
459 460 6.767902 GTCTGATTGACTAAGATGCCCAAATA 59.232 38.462 0.00 0.00 42.21 1.40
461 462 5.527214 TGATTGACTAAGATGCCCAAATACG 59.473 40.000 0.00 0.00 0.00 3.06
469 470 1.832883 TGCCCAAATACGACAGCATT 58.167 45.000 0.00 0.00 0.00 3.56
471 472 2.680841 TGCCCAAATACGACAGCATTAC 59.319 45.455 0.00 0.00 0.00 1.89
488 489 2.543777 TACTTGCAGCGGAAGAAACT 57.456 45.000 14.50 0.00 0.00 2.66
507 508 6.974622 AGAAACTTAAACAAATGAGCACACAG 59.025 34.615 0.00 0.00 0.00 3.66
515 516 4.456911 ACAAATGAGCACACAGGACTTATG 59.543 41.667 0.00 0.00 0.00 1.90
568 575 5.014123 AGTTCTGACTACCAATCCAATCCAA 59.986 40.000 0.00 0.00 33.32 3.53
571 578 5.191522 TCTGACTACCAATCCAATCCAATCA 59.808 40.000 0.00 0.00 0.00 2.57
572 579 5.192927 TGACTACCAATCCAATCCAATCAC 58.807 41.667 0.00 0.00 0.00 3.06
574 581 4.949856 ACTACCAATCCAATCCAATCACAC 59.050 41.667 0.00 0.00 0.00 3.82
577 584 4.221262 ACCAATCCAATCCAATCACACTTG 59.779 41.667 0.00 0.00 0.00 3.16
578 585 4.463539 CCAATCCAATCCAATCACACTTGA 59.536 41.667 0.00 0.00 35.73 3.02
579 586 5.404946 CAATCCAATCCAATCACACTTGAC 58.595 41.667 0.00 0.00 33.38 3.18
580 587 4.371624 TCCAATCCAATCACACTTGACT 57.628 40.909 0.00 0.00 33.38 3.41
583 590 3.795688 ATCCAATCACACTTGACTGGT 57.204 42.857 2.33 0.00 46.19 4.00
584 591 3.576078 TCCAATCACACTTGACTGGTT 57.424 42.857 2.33 0.00 46.19 3.67
585 592 3.897239 TCCAATCACACTTGACTGGTTT 58.103 40.909 2.33 0.00 46.19 3.27
588 595 3.576078 ATCACACTTGACTGGTTTCCA 57.424 42.857 0.00 0.00 33.38 3.53
599 606 2.868899 CTGGTTTCCAGCCTTTCTTCT 58.131 47.619 2.77 0.00 45.13 2.85
600 607 3.225940 CTGGTTTCCAGCCTTTCTTCTT 58.774 45.455 2.77 0.00 45.13 2.52
601 608 2.958355 TGGTTTCCAGCCTTTCTTCTTG 59.042 45.455 0.00 0.00 0.00 3.02
602 609 2.288457 GGTTTCCAGCCTTTCTTCTTGC 60.288 50.000 0.00 0.00 0.00 4.01
603 610 2.362077 GTTTCCAGCCTTTCTTCTTGCA 59.638 45.455 0.00 0.00 0.00 4.08
604 611 1.609208 TCCAGCCTTTCTTCTTGCAC 58.391 50.000 0.00 0.00 0.00 4.57
605 612 0.600057 CCAGCCTTTCTTCTTGCACC 59.400 55.000 0.00 0.00 0.00 5.01
606 613 0.600057 CAGCCTTTCTTCTTGCACCC 59.400 55.000 0.00 0.00 0.00 4.61
607 614 0.185901 AGCCTTTCTTCTTGCACCCA 59.814 50.000 0.00 0.00 0.00 4.51
608 615 0.315251 GCCTTTCTTCTTGCACCCAC 59.685 55.000 0.00 0.00 0.00 4.61
609 616 1.986882 CCTTTCTTCTTGCACCCACT 58.013 50.000 0.00 0.00 0.00 4.00
610 617 2.310538 CCTTTCTTCTTGCACCCACTT 58.689 47.619 0.00 0.00 0.00 3.16
611 618 2.294512 CCTTTCTTCTTGCACCCACTTC 59.705 50.000 0.00 0.00 0.00 3.01
612 619 3.217626 CTTTCTTCTTGCACCCACTTCT 58.782 45.455 0.00 0.00 0.00 2.85
613 620 2.260844 TCTTCTTGCACCCACTTCTG 57.739 50.000 0.00 0.00 0.00 3.02
614 621 1.490490 TCTTCTTGCACCCACTTCTGT 59.510 47.619 0.00 0.00 0.00 3.41
615 622 1.605710 CTTCTTGCACCCACTTCTGTG 59.394 52.381 0.00 0.00 43.45 3.66
616 623 0.836606 TCTTGCACCCACTTCTGTGA 59.163 50.000 0.00 0.00 46.55 3.58
617 624 0.947244 CTTGCACCCACTTCTGTGAC 59.053 55.000 0.00 0.00 46.55 3.67
618 625 0.465460 TTGCACCCACTTCTGTGACC 60.465 55.000 0.00 0.00 46.55 4.02
619 626 1.344953 TGCACCCACTTCTGTGACCT 61.345 55.000 0.00 0.00 46.55 3.85
620 627 0.685097 GCACCCACTTCTGTGACCTA 59.315 55.000 0.00 0.00 46.55 3.08
647 654 4.648307 AGGGAAGCAATGAATCTTGAATCC 59.352 41.667 0.00 0.00 34.33 3.01
678 691 1.482182 CAGCACTACCATGGAGCTACA 59.518 52.381 21.47 0.00 33.59 2.74
800 819 3.998672 GGCCTTCGTGGGACGTCA 61.999 66.667 18.91 0.00 43.14 4.35
827 846 2.418910 CCTCCTCGGCGACATGAGT 61.419 63.158 4.99 0.00 0.00 3.41
848 867 1.335496 GACTACGGCAGGCAAAACAAA 59.665 47.619 0.00 0.00 29.64 2.83
919 941 2.367567 ACGTCTTGCCTTTCCTCTACAA 59.632 45.455 0.00 0.00 0.00 2.41
975 1008 4.626402 TCGGTCCGGTTCCCCACT 62.626 66.667 12.29 0.00 0.00 4.00
1041 1077 1.814429 TCCAGAAGGTCAAGTTCCCA 58.186 50.000 0.00 0.00 35.89 4.37
1098 1134 1.064825 ACGAGGGTGAGAAATGGGTT 58.935 50.000 0.00 0.00 0.00 4.11
1203 1245 0.096281 CGTTTGTGACAAGTGTGCGT 59.904 50.000 0.00 0.00 0.00 5.24
1204 1246 1.534028 GTTTGTGACAAGTGTGCGTG 58.466 50.000 0.00 0.00 0.00 5.34
1390 1440 1.672881 GCATTCGGCAGCAGTTATCTT 59.327 47.619 0.00 0.00 43.97 2.40
1468 1518 4.556104 GCCATTCACAAGATCATGATTCCG 60.556 45.833 10.14 3.79 0.00 4.30
1476 1526 4.073293 AGATCATGATTCCGGGTTACAC 57.927 45.455 10.14 0.00 0.00 2.90
2347 2628 7.285783 CAAAATGCAGTTTGGATGACATTAG 57.714 36.000 27.43 1.72 35.29 1.73
2586 4283 1.078426 GGCGCCCTCATAGTTGTGT 60.078 57.895 18.11 0.00 0.00 3.72
2587 4284 1.090052 GGCGCCCTCATAGTTGTGTC 61.090 60.000 18.11 0.00 0.00 3.67
2588 4285 0.391130 GCGCCCTCATAGTTGTGTCA 60.391 55.000 0.00 0.00 0.00 3.58
2589 4286 1.743772 GCGCCCTCATAGTTGTGTCAT 60.744 52.381 0.00 0.00 0.00 3.06
2590 4287 2.632377 CGCCCTCATAGTTGTGTCATT 58.368 47.619 0.00 0.00 0.00 2.57
2591 4288 3.009723 CGCCCTCATAGTTGTGTCATTT 58.990 45.455 0.00 0.00 0.00 2.32
2592 4289 3.063997 CGCCCTCATAGTTGTGTCATTTC 59.936 47.826 0.00 0.00 0.00 2.17
2593 4290 4.265073 GCCCTCATAGTTGTGTCATTTCT 58.735 43.478 0.00 0.00 0.00 2.52
2594 4291 4.095483 GCCCTCATAGTTGTGTCATTTCTG 59.905 45.833 0.00 0.00 0.00 3.02
2601 4298 4.624015 AGTTGTGTCATTTCTGCCATTTG 58.376 39.130 0.00 0.00 0.00 2.32
3763 7976 9.209048 ACCCATTTAGTTACATAGATACAGACA 57.791 33.333 0.00 0.00 0.00 3.41
3781 7994 5.994054 ACAGACAATCCATTATCGATTCCAG 59.006 40.000 1.71 0.00 0.00 3.86
4708 11212 7.606135 ATGATGCATGGAAGGAAATCATTTA 57.394 32.000 2.46 0.00 31.73 1.40
4945 11450 2.905085 TGTTGTGGGACTAATTACGGGA 59.095 45.455 0.00 0.00 0.00 5.14
5014 11519 7.611079 AGACTAGTTAGTACTACTTCCACCTTG 59.389 40.741 0.91 0.00 36.50 3.61
5024 11529 4.579384 CCACCTTGCCACCACCGT 62.579 66.667 0.00 0.00 0.00 4.83
5046 11551 5.616866 CGTCCAGGTGTTTTGTGCTTATTAG 60.617 44.000 0.00 0.00 0.00 1.73
5063 11568 6.984474 GCTTATTAGCTGGTATACTGACAACA 59.016 38.462 2.25 0.00 44.27 3.33
5064 11569 7.657761 GCTTATTAGCTGGTATACTGACAACAT 59.342 37.037 2.25 0.00 44.27 2.71
5146 11651 4.142988 CGAGATAGAGTCCATTCTACGAGC 60.143 50.000 0.00 0.00 32.78 5.03
5196 11701 2.951642 CAAGAAGGAGGAAGCACAAACA 59.048 45.455 0.00 0.00 0.00 2.83
5205 11710 3.953612 AGGAAGCACAAACAATGACTTGA 59.046 39.130 6.79 0.00 36.20 3.02
5451 11957 5.198965 AGCTTGACTACGAGGGTCTTAATA 58.801 41.667 0.00 0.00 35.04 0.98
5471 11977 9.630098 CTTAATAGACTAAAAACCGTGAGTACA 57.370 33.333 0.00 0.00 0.00 2.90
5515 12032 7.886970 AGTTGCTGCAAACATATATAGGATCAT 59.113 33.333 17.80 0.00 32.21 2.45
5517 12034 8.953368 TGCTGCAAACATATATAGGATCATAG 57.047 34.615 0.00 0.00 0.00 2.23
5519 12036 7.041508 GCTGCAAACATATATAGGATCATAGGC 60.042 40.741 0.54 0.00 0.00 3.93
5689 12209 1.983605 CGAGATGTCCGTGTTGTACAC 59.016 52.381 0.00 0.00 45.26 2.90
5717 12237 3.169099 CGACAAGGATATCTGGGGAGAT 58.831 50.000 2.05 0.00 0.00 2.75
5761 12281 0.618968 AGGTTCGCTGAGGGGATCTT 60.619 55.000 0.00 0.00 34.41 2.40
5816 12336 2.852075 GGATGGGGGCCACGGATA 60.852 66.667 4.39 0.00 35.80 2.59
5840 12360 4.391830 TGTATCGGTCAGAATTTTGCACTC 59.608 41.667 0.00 0.00 0.00 3.51
5912 12432 0.040692 TCGCGCCGTCATATACTCAC 60.041 55.000 0.00 0.00 0.00 3.51
6098 12636 5.636123 TGCCCTCTGTTTTGGTAATAAAGA 58.364 37.500 0.00 0.00 0.00 2.52
6117 12655 1.605710 GATCCAACATGATTCAGGGCG 59.394 52.381 0.00 0.00 0.00 6.13
6188 12733 1.583054 GCCTAGGAAGGTATTGTGCG 58.417 55.000 14.75 0.00 45.64 5.34
6267 12812 2.909965 TTTGGCCAGCCGTTGTCC 60.910 61.111 5.11 0.00 39.42 4.02
6268 12813 3.723097 TTTGGCCAGCCGTTGTCCA 62.723 57.895 5.11 0.00 39.42 4.02
6270 12815 4.947147 GGCCAGCCGTTGTCCACA 62.947 66.667 0.00 0.00 0.00 4.17
6281 12826 3.001939 CCGTTGTCCACAAGAACAACTAC 59.998 47.826 14.30 0.00 39.95 2.73
6287 12832 4.694037 GTCCACAAGAACAACTACCCATAC 59.306 45.833 0.00 0.00 0.00 2.39
6296 12841 4.101856 ACAACTACCCATACTAGTGCCTT 58.898 43.478 5.39 0.00 0.00 4.35
6316 12861 3.371097 GAGCATCTCCAACGGCCGA 62.371 63.158 35.90 8.69 0.00 5.54
6797 13372 1.577328 CGCGTGGCCAGATGAACTTT 61.577 55.000 5.11 0.00 0.00 2.66
6866 13441 1.512926 GTCTGAACACGGCACAAGAT 58.487 50.000 0.00 0.00 0.00 2.40
6969 13544 3.129502 CGGAGGACGTCGCCTACA 61.130 66.667 19.75 0.00 38.96 2.74
6981 13556 0.530744 CGCCTACAAGCAGTCCTACA 59.469 55.000 0.00 0.00 0.00 2.74
6982 13557 1.469940 CGCCTACAAGCAGTCCTACAG 60.470 57.143 0.00 0.00 0.00 2.74
6983 13558 1.740718 GCCTACAAGCAGTCCTACAGC 60.741 57.143 0.00 0.00 0.00 4.40
6984 13559 1.827969 CCTACAAGCAGTCCTACAGCT 59.172 52.381 0.00 0.00 43.03 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.984230 AAAGTAGCACCAGCCAGCTA 59.016 50.000 0.00 0.00 43.56 3.32
5 6 0.890996 ACAAAGTAGCACCAGCCAGC 60.891 55.000 0.00 0.00 43.56 4.85
7 8 2.882137 GTTAACAAAGTAGCACCAGCCA 59.118 45.455 0.00 0.00 43.56 4.75
8 9 2.228103 GGTTAACAAAGTAGCACCAGCC 59.772 50.000 8.10 0.00 43.56 4.85
9 10 2.882137 TGGTTAACAAAGTAGCACCAGC 59.118 45.455 8.10 0.00 42.56 4.85
10 11 5.003804 AGATGGTTAACAAAGTAGCACCAG 58.996 41.667 8.10 0.00 37.71 4.00
11 12 4.980573 AGATGGTTAACAAAGTAGCACCA 58.019 39.130 8.10 0.00 38.64 4.17
13 14 6.313164 GGAGTAGATGGTTAACAAAGTAGCAC 59.687 42.308 8.10 0.00 0.00 4.40
15 16 5.816258 GGGAGTAGATGGTTAACAAAGTAGC 59.184 44.000 8.10 0.00 0.00 3.58
18 19 5.337330 CGAGGGAGTAGATGGTTAACAAAGT 60.337 44.000 8.10 0.00 0.00 2.66
20 21 4.081309 CCGAGGGAGTAGATGGTTAACAAA 60.081 45.833 8.10 0.00 0.00 2.83
22 23 3.028850 CCGAGGGAGTAGATGGTTAACA 58.971 50.000 8.10 0.00 0.00 2.41
23 24 3.029570 ACCGAGGGAGTAGATGGTTAAC 58.970 50.000 0.00 0.00 0.00 2.01
24 25 3.294214 GACCGAGGGAGTAGATGGTTAA 58.706 50.000 0.00 0.00 0.00 2.01
25 26 2.423947 GGACCGAGGGAGTAGATGGTTA 60.424 54.545 0.00 0.00 0.00 2.85
26 27 1.688627 GGACCGAGGGAGTAGATGGTT 60.689 57.143 0.00 0.00 0.00 3.67
27 28 0.106116 GGACCGAGGGAGTAGATGGT 60.106 60.000 0.00 0.00 0.00 3.55
28 29 0.828343 GGGACCGAGGGAGTAGATGG 60.828 65.000 0.00 0.00 0.00 3.51
30 31 0.861155 ATGGGACCGAGGGAGTAGAT 59.139 55.000 0.00 0.00 0.00 1.98
31 32 1.526315 TATGGGACCGAGGGAGTAGA 58.474 55.000 0.00 0.00 0.00 2.59
32 33 2.376695 TTATGGGACCGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
33 34 4.687262 ATATTATGGGACCGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
34 35 3.562108 ATATTATGGGACCGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
36 37 5.280317 GCTTTTATATTATGGGACCGAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
39 40 7.687941 AATGCTTTTATATTATGGGACCGAG 57.312 36.000 0.00 0.00 0.00 4.63
40 41 8.472007 AAAATGCTTTTATATTATGGGACCGA 57.528 30.769 0.00 0.00 0.00 4.69
64 65 9.431887 GACCTCATAATACACTAGTGTGAAAAA 57.568 33.333 33.77 17.21 46.55 1.94
65 66 7.758076 CGACCTCATAATACACTAGTGTGAAAA 59.242 37.037 33.77 17.57 46.55 2.29
66 67 7.094075 ACGACCTCATAATACACTAGTGTGAAA 60.094 37.037 33.77 20.21 46.55 2.69
68 69 5.884232 ACGACCTCATAATACACTAGTGTGA 59.116 40.000 33.77 21.94 46.55 3.58
72 73 4.024218 GCGACGACCTCATAATACACTAGT 60.024 45.833 0.00 0.00 0.00 2.57
73 74 4.465016 GCGACGACCTCATAATACACTAG 58.535 47.826 0.00 0.00 0.00 2.57
74 75 3.251729 GGCGACGACCTCATAATACACTA 59.748 47.826 0.00 0.00 0.00 2.74
75 76 2.034305 GGCGACGACCTCATAATACACT 59.966 50.000 0.00 0.00 0.00 3.55
77 78 2.025898 TGGCGACGACCTCATAATACA 58.974 47.619 0.00 0.00 0.00 2.29
78 79 2.787601 TGGCGACGACCTCATAATAC 57.212 50.000 0.00 0.00 0.00 1.89
79 80 5.654603 AATATGGCGACGACCTCATAATA 57.345 39.130 0.00 0.00 0.00 0.98
80 81 4.537135 AATATGGCGACGACCTCATAAT 57.463 40.909 0.00 0.00 0.00 1.28
81 82 4.055360 CAAATATGGCGACGACCTCATAA 58.945 43.478 0.00 0.00 0.00 1.90
83 84 2.102420 TCAAATATGGCGACGACCTCAT 59.898 45.455 0.00 0.00 0.00 2.90
84 85 1.478916 TCAAATATGGCGACGACCTCA 59.521 47.619 0.00 0.00 0.00 3.86
85 86 2.128035 CTCAAATATGGCGACGACCTC 58.872 52.381 0.00 0.00 0.00 3.85
86 87 1.202533 CCTCAAATATGGCGACGACCT 60.203 52.381 0.00 0.00 0.00 3.85
87 88 1.217882 CCTCAAATATGGCGACGACC 58.782 55.000 0.00 0.00 0.00 4.79
88 89 1.217882 CCCTCAAATATGGCGACGAC 58.782 55.000 0.00 0.00 0.00 4.34
89 90 0.828022 ACCCTCAAATATGGCGACGA 59.172 50.000 0.00 0.00 0.00 4.20
90 91 1.663695 AACCCTCAAATATGGCGACG 58.336 50.000 0.00 0.00 0.00 5.12
91 92 3.139077 CCTAACCCTCAAATATGGCGAC 58.861 50.000 0.00 0.00 0.00 5.19
92 93 3.042682 TCCTAACCCTCAAATATGGCGA 58.957 45.455 0.00 0.00 0.00 5.54
93 94 3.071023 TCTCCTAACCCTCAAATATGGCG 59.929 47.826 0.00 0.00 0.00 5.69
94 95 4.141482 TGTCTCCTAACCCTCAAATATGGC 60.141 45.833 0.00 0.00 0.00 4.40
97 98 6.183361 GGTGATGTCTCCTAACCCTCAAATAT 60.183 42.308 0.00 0.00 0.00 1.28
98 99 5.130477 GGTGATGTCTCCTAACCCTCAAATA 59.870 44.000 0.00 0.00 0.00 1.40
99 100 4.080299 GGTGATGTCTCCTAACCCTCAAAT 60.080 45.833 0.00 0.00 0.00 2.32
100 101 3.263425 GGTGATGTCTCCTAACCCTCAAA 59.737 47.826 0.00 0.00 0.00 2.69
101 102 2.838202 GGTGATGTCTCCTAACCCTCAA 59.162 50.000 0.00 0.00 0.00 3.02
102 103 2.044492 AGGTGATGTCTCCTAACCCTCA 59.956 50.000 1.93 0.00 38.02 3.86
103 104 2.753247 AGGTGATGTCTCCTAACCCTC 58.247 52.381 1.93 0.00 38.02 4.30
104 105 2.950990 AGGTGATGTCTCCTAACCCT 57.049 50.000 1.93 0.00 38.02 4.34
105 106 6.936968 ATTATAGGTGATGTCTCCTAACCC 57.063 41.667 13.15 0.00 43.02 4.11
109 110 9.409918 GCACTATATTATAGGTGATGTCTCCTA 57.590 37.037 13.87 11.91 43.65 2.94
110 111 7.343316 GGCACTATATTATAGGTGATGTCTCCT 59.657 40.741 13.87 8.52 42.06 3.69
112 113 8.067751 TGGCACTATATTATAGGTGATGTCTC 57.932 38.462 13.87 1.49 32.12 3.36
113 114 8.481314 CATGGCACTATATTATAGGTGATGTCT 58.519 37.037 13.87 0.00 32.12 3.41
114 115 8.260818 ACATGGCACTATATTATAGGTGATGTC 58.739 37.037 13.87 6.28 28.15 3.06
115 116 8.150827 ACATGGCACTATATTATAGGTGATGT 57.849 34.615 13.87 12.07 32.12 3.06
116 117 9.755804 CTACATGGCACTATATTATAGGTGATG 57.244 37.037 13.87 11.61 32.12 3.07
117 118 9.494055 ACTACATGGCACTATATTATAGGTGAT 57.506 33.333 13.87 0.30 32.12 3.06
118 119 8.895141 ACTACATGGCACTATATTATAGGTGA 57.105 34.615 13.87 0.00 32.12 4.02
120 121 9.763837 TGTACTACATGGCACTATATTATAGGT 57.236 33.333 13.87 5.00 0.00 3.08
126 127 8.314751 GGATTCTGTACTACATGGCACTATATT 58.685 37.037 0.00 0.00 0.00 1.28
127 128 7.676043 AGGATTCTGTACTACATGGCACTATAT 59.324 37.037 0.00 0.00 0.00 0.86
128 129 7.010771 AGGATTCTGTACTACATGGCACTATA 58.989 38.462 0.00 0.00 0.00 1.31
129 130 5.841237 AGGATTCTGTACTACATGGCACTAT 59.159 40.000 0.00 0.00 0.00 2.12
130 131 5.208890 AGGATTCTGTACTACATGGCACTA 58.791 41.667 0.00 0.00 0.00 2.74
131 132 4.033709 AGGATTCTGTACTACATGGCACT 58.966 43.478 0.00 0.00 0.00 4.40
133 134 3.068165 CGAGGATTCTGTACTACATGGCA 59.932 47.826 0.00 0.00 0.00 4.92
134 135 3.318275 TCGAGGATTCTGTACTACATGGC 59.682 47.826 0.00 0.00 0.00 4.40
136 137 6.183360 TGTTCTCGAGGATTCTGTACTACATG 60.183 42.308 13.56 0.00 0.00 3.21
138 139 5.250982 TGTTCTCGAGGATTCTGTACTACA 58.749 41.667 13.56 0.00 0.00 2.74
139 140 5.814764 TGTTCTCGAGGATTCTGTACTAC 57.185 43.478 13.56 0.00 0.00 2.73
140 141 6.038382 GTCATGTTCTCGAGGATTCTGTACTA 59.962 42.308 13.56 0.00 0.00 1.82
141 142 4.950475 TCATGTTCTCGAGGATTCTGTACT 59.050 41.667 13.56 0.00 0.00 2.73
142 143 5.038033 GTCATGTTCTCGAGGATTCTGTAC 58.962 45.833 13.56 0.00 0.00 2.90
143 144 4.201920 CGTCATGTTCTCGAGGATTCTGTA 60.202 45.833 13.56 0.00 0.00 2.74
144 145 3.428180 CGTCATGTTCTCGAGGATTCTGT 60.428 47.826 13.56 0.00 0.00 3.41
145 146 3.111838 CGTCATGTTCTCGAGGATTCTG 58.888 50.000 13.56 3.26 0.00 3.02
149 150 2.035193 CCATCGTCATGTTCTCGAGGAT 59.965 50.000 13.56 1.55 37.53 3.24
153 154 3.253432 CCTATCCATCGTCATGTTCTCGA 59.747 47.826 0.00 0.27 37.96 4.04
156 157 3.004839 CGTCCTATCCATCGTCATGTTCT 59.995 47.826 0.00 0.00 0.00 3.01
157 158 3.309388 CGTCCTATCCATCGTCATGTTC 58.691 50.000 0.00 0.00 0.00 3.18
158 159 2.035961 CCGTCCTATCCATCGTCATGTT 59.964 50.000 0.00 0.00 0.00 2.71
160 161 1.613925 ACCGTCCTATCCATCGTCATG 59.386 52.381 0.00 0.00 0.00 3.07
161 162 1.887198 GACCGTCCTATCCATCGTCAT 59.113 52.381 0.00 0.00 0.00 3.06
162 163 1.315690 GACCGTCCTATCCATCGTCA 58.684 55.000 0.00 0.00 0.00 4.35
163 164 0.597072 GGACCGTCCTATCCATCGTC 59.403 60.000 10.59 0.00 34.87 4.20
164 165 0.106369 TGGACCGTCCTATCCATCGT 60.106 55.000 18.54 0.00 40.17 3.73
165 166 0.314302 GTGGACCGTCCTATCCATCG 59.686 60.000 18.54 0.00 46.55 3.84
167 168 1.120530 GTGTGGACCGTCCTATCCAT 58.879 55.000 18.54 0.00 46.55 3.41
168 169 0.251877 TGTGTGGACCGTCCTATCCA 60.252 55.000 18.54 7.30 42.88 3.41
169 170 0.899720 TTGTGTGGACCGTCCTATCC 59.100 55.000 18.54 4.91 37.46 2.59
171 172 0.902531 CCTTGTGTGGACCGTCCTAT 59.097 55.000 18.54 0.00 37.46 2.57
173 174 3.148084 CCTTGTGTGGACCGTCCT 58.852 61.111 18.54 0.00 37.46 3.85
174 175 2.668550 GCCTTGTGTGGACCGTCC 60.669 66.667 10.96 10.96 36.96 4.79
182 183 3.357079 GGTCTGCCGCCTTGTGTG 61.357 66.667 0.00 0.00 0.00 3.82
183 184 3.120086 AAGGTCTGCCGCCTTGTGT 62.120 57.895 3.21 0.00 44.01 3.72
184 185 2.281761 AAGGTCTGCCGCCTTGTG 60.282 61.111 3.21 0.00 44.01 3.33
185 186 2.032681 GAAGGTCTGCCGCCTTGT 59.967 61.111 8.06 0.00 45.51 3.16
188 189 0.107654 GTTATGAAGGTCTGCCGCCT 60.108 55.000 0.00 0.00 40.50 5.52
189 190 0.392461 TGTTATGAAGGTCTGCCGCC 60.392 55.000 0.00 0.00 40.50 6.13
190 191 1.130561 GTTGTTATGAAGGTCTGCCGC 59.869 52.381 0.00 0.00 40.50 6.53
191 192 2.699954 AGTTGTTATGAAGGTCTGCCG 58.300 47.619 0.00 0.00 40.50 5.69
192 193 4.833390 ACTAGTTGTTATGAAGGTCTGCC 58.167 43.478 0.00 0.00 0.00 4.85
194 195 6.868622 AGCTACTAGTTGTTATGAAGGTCTG 58.131 40.000 0.00 0.00 0.00 3.51
195 196 6.893005 AGAGCTACTAGTTGTTATGAAGGTCT 59.107 38.462 11.96 11.96 36.16 3.85
198 199 7.101652 TGAGAGCTACTAGTTGTTATGAAGG 57.898 40.000 0.00 0.00 0.00 3.46
199 200 6.695278 GCTGAGAGCTACTAGTTGTTATGAAG 59.305 42.308 0.00 0.00 38.45 3.02
200 201 6.152831 TGCTGAGAGCTACTAGTTGTTATGAA 59.847 38.462 0.00 0.00 42.97 2.57
201 202 5.652452 TGCTGAGAGCTACTAGTTGTTATGA 59.348 40.000 0.00 0.00 42.97 2.15
203 204 5.888724 TCTGCTGAGAGCTACTAGTTGTTAT 59.111 40.000 0.00 0.00 42.97 1.89
204 205 5.254115 TCTGCTGAGAGCTACTAGTTGTTA 58.746 41.667 0.00 0.00 42.97 2.41
205 206 4.082845 TCTGCTGAGAGCTACTAGTTGTT 58.917 43.478 0.00 0.00 42.97 2.83
206 207 3.691575 TCTGCTGAGAGCTACTAGTTGT 58.308 45.455 0.00 0.00 42.97 3.32
207 208 4.710423 TTCTGCTGAGAGCTACTAGTTG 57.290 45.455 0.00 0.00 42.97 3.16
208 209 4.159506 CCTTTCTGCTGAGAGCTACTAGTT 59.840 45.833 0.00 0.00 42.97 2.24
209 210 3.699038 CCTTTCTGCTGAGAGCTACTAGT 59.301 47.826 0.00 0.00 42.97 2.57
210 211 3.490761 GCCTTTCTGCTGAGAGCTACTAG 60.491 52.174 5.70 0.00 42.97 2.57
211 212 2.428890 GCCTTTCTGCTGAGAGCTACTA 59.571 50.000 5.70 0.00 42.97 1.82
212 213 1.206849 GCCTTTCTGCTGAGAGCTACT 59.793 52.381 5.70 0.00 42.97 2.57
214 215 1.206610 CTGCCTTTCTGCTGAGAGCTA 59.793 52.381 5.70 0.00 42.97 3.32
215 216 0.036199 CTGCCTTTCTGCTGAGAGCT 60.036 55.000 5.70 0.00 42.97 4.09
216 217 0.036577 TCTGCCTTTCTGCTGAGAGC 60.037 55.000 5.70 5.38 42.82 4.09
222 223 1.349026 TGTTAGCTCTGCCTTTCTGCT 59.651 47.619 0.00 0.00 37.72 4.24
223 224 1.813513 TGTTAGCTCTGCCTTTCTGC 58.186 50.000 0.00 0.00 0.00 4.26
224 225 2.681848 CCATGTTAGCTCTGCCTTTCTG 59.318 50.000 0.00 0.00 0.00 3.02
227 228 1.957113 GCCCATGTTAGCTCTGCCTTT 60.957 52.381 0.00 0.00 0.00 3.11
229 230 1.225704 GCCCATGTTAGCTCTGCCT 59.774 57.895 0.00 0.00 0.00 4.75
235 236 2.943033 GTTGTTATCGCCCATGTTAGCT 59.057 45.455 0.00 0.00 0.00 3.32
236 237 2.032924 GGTTGTTATCGCCCATGTTAGC 59.967 50.000 0.00 0.00 0.00 3.09
237 238 2.286833 CGGTTGTTATCGCCCATGTTAG 59.713 50.000 0.00 0.00 0.00 2.34
238 239 2.281517 CGGTTGTTATCGCCCATGTTA 58.718 47.619 0.00 0.00 0.00 2.41
239 240 1.091537 CGGTTGTTATCGCCCATGTT 58.908 50.000 0.00 0.00 0.00 2.71
240 241 1.373590 GCGGTTGTTATCGCCCATGT 61.374 55.000 0.00 0.00 45.42 3.21
242 243 3.821995 GCGGTTGTTATCGCCCAT 58.178 55.556 0.00 0.00 45.42 4.00
247 248 1.635844 TAGCACAGCGGTTGTTATCG 58.364 50.000 0.00 0.00 38.16 2.92
248 249 4.142687 ACAAATAGCACAGCGGTTGTTATC 60.143 41.667 0.00 0.00 38.16 1.75
249 250 3.756434 ACAAATAGCACAGCGGTTGTTAT 59.244 39.130 0.00 0.00 38.16 1.89
250 251 3.142951 ACAAATAGCACAGCGGTTGTTA 58.857 40.909 0.00 0.00 38.16 2.41
251 252 1.953686 ACAAATAGCACAGCGGTTGTT 59.046 42.857 0.00 0.00 38.16 2.83
253 254 2.318578 CAACAAATAGCACAGCGGTTG 58.681 47.619 0.00 0.00 0.00 3.77
254 255 1.335872 GCAACAAATAGCACAGCGGTT 60.336 47.619 0.00 0.00 0.00 4.44
255 256 0.240945 GCAACAAATAGCACAGCGGT 59.759 50.000 0.00 0.00 0.00 5.68
258 259 3.119743 TCAGATGCAACAAATAGCACAGC 60.120 43.478 0.00 0.00 44.49 4.40
259 260 4.155462 ACTCAGATGCAACAAATAGCACAG 59.845 41.667 0.00 0.00 44.49 3.66
260 261 4.074259 ACTCAGATGCAACAAATAGCACA 58.926 39.130 0.00 0.00 44.49 4.57
261 262 4.691860 ACTCAGATGCAACAAATAGCAC 57.308 40.909 0.00 0.00 44.49 4.40
262 263 5.491070 ACTACTCAGATGCAACAAATAGCA 58.509 37.500 0.00 0.00 45.92 3.49
263 264 7.064609 TGTTACTACTCAGATGCAACAAATAGC 59.935 37.037 0.00 0.00 0.00 2.97
264 265 8.479313 TGTTACTACTCAGATGCAACAAATAG 57.521 34.615 0.00 0.00 0.00 1.73
266 267 7.928307 ATGTTACTACTCAGATGCAACAAAT 57.072 32.000 0.00 0.00 0.00 2.32
268 269 7.161404 AGAATGTTACTACTCAGATGCAACAA 58.839 34.615 0.00 0.00 0.00 2.83
269 270 6.701340 AGAATGTTACTACTCAGATGCAACA 58.299 36.000 0.00 0.00 0.00 3.33
270 271 7.976734 AGTAGAATGTTACTACTCAGATGCAAC 59.023 37.037 0.00 0.00 44.58 4.17
272 273 7.484140 CAGTAGAATGTTACTACTCAGATGCA 58.516 38.462 0.00 0.00 45.58 3.96
273 274 6.419413 GCAGTAGAATGTTACTACTCAGATGC 59.581 42.308 0.00 0.00 45.58 3.91
274 275 7.484140 TGCAGTAGAATGTTACTACTCAGATG 58.516 38.462 0.00 0.00 45.58 2.90
275 276 7.646548 TGCAGTAGAATGTTACTACTCAGAT 57.353 36.000 0.00 0.00 45.58 2.90
276 277 7.393515 TCTTGCAGTAGAATGTTACTACTCAGA 59.606 37.037 0.00 0.00 45.58 3.27
277 278 7.539436 TCTTGCAGTAGAATGTTACTACTCAG 58.461 38.462 0.00 0.00 45.58 3.35
278 279 7.176865 ACTCTTGCAGTAGAATGTTACTACTCA 59.823 37.037 0.00 0.00 45.58 3.41
281 282 9.804758 ATTACTCTTGCAGTAGAATGTTACTAC 57.195 33.333 4.54 0.00 38.90 2.73
285 286 6.978659 CGGATTACTCTTGCAGTAGAATGTTA 59.021 38.462 4.54 0.00 38.90 2.41
286 287 5.812642 CGGATTACTCTTGCAGTAGAATGTT 59.187 40.000 4.54 0.00 38.90 2.71
287 288 5.105310 ACGGATTACTCTTGCAGTAGAATGT 60.105 40.000 4.54 0.00 38.90 2.71
288 289 5.352284 ACGGATTACTCTTGCAGTAGAATG 58.648 41.667 4.54 0.00 38.90 2.67
292 293 4.929808 ACAAACGGATTACTCTTGCAGTAG 59.070 41.667 0.00 0.00 38.90 2.57
294 295 3.740115 ACAAACGGATTACTCTTGCAGT 58.260 40.909 0.00 0.00 39.41 4.40
296 297 8.500753 AATATTACAAACGGATTACTCTTGCA 57.499 30.769 0.00 0.00 0.00 4.08
316 317 9.797556 GAAGCAACGGAAGGTTAAAATAATATT 57.202 29.630 0.00 0.00 36.49 1.28
317 318 9.185680 AGAAGCAACGGAAGGTTAAAATAATAT 57.814 29.630 0.00 0.00 36.49 1.28
318 319 8.570068 AGAAGCAACGGAAGGTTAAAATAATA 57.430 30.769 0.00 0.00 36.49 0.98
320 321 6.887626 AGAAGCAACGGAAGGTTAAAATAA 57.112 33.333 0.00 0.00 36.49 1.40
321 322 6.487331 TGAAGAAGCAACGGAAGGTTAAAATA 59.513 34.615 0.00 0.00 36.49 1.40
323 324 4.641094 TGAAGAAGCAACGGAAGGTTAAAA 59.359 37.500 0.00 0.00 36.49 1.52
324 325 4.200874 TGAAGAAGCAACGGAAGGTTAAA 58.799 39.130 0.00 0.00 36.49 1.52
325 326 3.811083 TGAAGAAGCAACGGAAGGTTAA 58.189 40.909 0.00 0.00 36.49 2.01
326 327 3.478857 TGAAGAAGCAACGGAAGGTTA 57.521 42.857 0.00 0.00 36.49 2.85
327 328 2.341846 TGAAGAAGCAACGGAAGGTT 57.658 45.000 0.00 0.00 40.22 3.50
328 329 2.341846 TTGAAGAAGCAACGGAAGGT 57.658 45.000 0.00 0.00 0.00 3.50
329 330 2.287608 GGTTTGAAGAAGCAACGGAAGG 60.288 50.000 0.00 0.00 0.00 3.46
330 331 2.287608 GGGTTTGAAGAAGCAACGGAAG 60.288 50.000 0.00 0.00 0.00 3.46
331 332 1.679153 GGGTTTGAAGAAGCAACGGAA 59.321 47.619 0.00 0.00 0.00 4.30
333 334 1.266989 GAGGGTTTGAAGAAGCAACGG 59.733 52.381 0.00 0.00 0.00 4.44
334 335 2.222027 AGAGGGTTTGAAGAAGCAACG 58.778 47.619 0.00 0.00 0.00 4.10
335 336 3.481453 AGAGAGGGTTTGAAGAAGCAAC 58.519 45.455 0.00 0.00 0.00 4.17
336 337 3.392616 AGAGAGAGGGTTTGAAGAAGCAA 59.607 43.478 0.00 0.00 0.00 3.91
337 338 2.975489 AGAGAGAGGGTTTGAAGAAGCA 59.025 45.455 0.00 0.00 0.00 3.91
338 339 3.260632 AGAGAGAGAGGGTTTGAAGAAGC 59.739 47.826 0.00 0.00 0.00 3.86
339 340 5.482163 AAGAGAGAGAGGGTTTGAAGAAG 57.518 43.478 0.00 0.00 0.00 2.85
340 341 5.896073 AAAGAGAGAGAGGGTTTGAAGAA 57.104 39.130 0.00 0.00 0.00 2.52
341 342 5.366768 TCAAAAGAGAGAGAGGGTTTGAAGA 59.633 40.000 0.00 0.00 33.37 2.87
342 343 5.615289 TCAAAAGAGAGAGAGGGTTTGAAG 58.385 41.667 0.00 0.00 33.37 3.02
343 344 5.630415 TCAAAAGAGAGAGAGGGTTTGAA 57.370 39.130 0.00 0.00 33.37 2.69
344 345 5.513788 CCATCAAAAGAGAGAGAGGGTTTGA 60.514 44.000 0.00 0.00 38.80 2.69
345 346 4.699257 CCATCAAAAGAGAGAGAGGGTTTG 59.301 45.833 0.00 0.00 0.00 2.93
349 350 4.566426 AACCATCAAAAGAGAGAGAGGG 57.434 45.455 0.00 0.00 37.90 4.30
373 374 5.509670 GGCAGGCAAGAAACTACAATCTTTT 60.510 40.000 0.00 0.00 33.73 2.27
377 378 2.819608 TGGCAGGCAAGAAACTACAATC 59.180 45.455 0.00 0.00 0.00 2.67
381 382 2.230660 ACTTGGCAGGCAAGAAACTAC 58.769 47.619 36.48 0.00 34.08 2.73
382 383 2.656947 ACTTGGCAGGCAAGAAACTA 57.343 45.000 36.48 2.85 34.08 2.24
408 409 1.623811 AGTCAGTGCCACGTTCCTAAT 59.376 47.619 0.00 0.00 0.00 1.73
410 411 1.913778 TAGTCAGTGCCACGTTCCTA 58.086 50.000 0.00 0.00 0.00 2.94
411 412 1.066858 CATAGTCAGTGCCACGTTCCT 60.067 52.381 0.00 0.00 0.00 3.36
418 419 1.218047 GACGCCATAGTCAGTGCCA 59.782 57.895 0.00 0.00 40.65 4.92
423 424 3.119291 GTCAATCAGACGCCATAGTCAG 58.881 50.000 0.00 0.00 43.24 3.51
437 438 5.527214 CGTATTTGGGCATCTTAGTCAATCA 59.473 40.000 0.00 0.00 0.00 2.57
438 439 5.758296 TCGTATTTGGGCATCTTAGTCAATC 59.242 40.000 0.00 0.00 0.00 2.67
439 440 5.527582 GTCGTATTTGGGCATCTTAGTCAAT 59.472 40.000 0.00 0.00 0.00 2.57
449 450 2.057137 ATGCTGTCGTATTTGGGCAT 57.943 45.000 0.00 0.00 35.89 4.40
452 453 4.908736 CAAGTAATGCTGTCGTATTTGGG 58.091 43.478 0.00 0.00 0.00 4.12
469 470 2.543777 AGTTTCTTCCGCTGCAAGTA 57.456 45.000 0.00 0.00 35.30 2.24
471 472 3.896648 TTAAGTTTCTTCCGCTGCAAG 57.103 42.857 0.00 0.00 0.00 4.01
480 481 7.487829 TGTGTGCTCATTTGTTTAAGTTTCTTC 59.512 33.333 0.00 0.00 0.00 2.87
488 489 4.887071 AGTCCTGTGTGCTCATTTGTTTAA 59.113 37.500 0.00 0.00 0.00 1.52
552 559 5.195940 AGTGTGATTGGATTGGATTGGTAG 58.804 41.667 0.00 0.00 0.00 3.18
554 561 4.051661 AGTGTGATTGGATTGGATTGGT 57.948 40.909 0.00 0.00 0.00 3.67
568 575 3.480470 CTGGAAACCAGTCAAGTGTGAT 58.520 45.455 9.36 0.00 45.82 3.06
580 587 2.958355 CAAGAAGAAAGGCTGGAAACCA 59.042 45.455 0.00 0.00 0.00 3.67
582 589 2.362077 TGCAAGAAGAAAGGCTGGAAAC 59.638 45.455 0.00 0.00 0.00 2.78
583 590 2.362077 GTGCAAGAAGAAAGGCTGGAAA 59.638 45.455 0.00 0.00 0.00 3.13
584 591 1.956477 GTGCAAGAAGAAAGGCTGGAA 59.044 47.619 0.00 0.00 0.00 3.53
585 592 1.609208 GTGCAAGAAGAAAGGCTGGA 58.391 50.000 0.00 0.00 0.00 3.86
588 595 0.185901 TGGGTGCAAGAAGAAAGGCT 59.814 50.000 0.00 0.00 0.00 4.58
589 596 0.315251 GTGGGTGCAAGAAGAAAGGC 59.685 55.000 0.00 0.00 0.00 4.35
591 598 3.004106 CAGAAGTGGGTGCAAGAAGAAAG 59.996 47.826 0.00 0.00 0.00 2.62
592 599 2.951642 CAGAAGTGGGTGCAAGAAGAAA 59.048 45.455 0.00 0.00 0.00 2.52
593 600 2.092429 ACAGAAGTGGGTGCAAGAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
594 601 1.490490 ACAGAAGTGGGTGCAAGAAGA 59.510 47.619 0.00 0.00 0.00 2.87
595 602 1.605710 CACAGAAGTGGGTGCAAGAAG 59.394 52.381 0.00 0.00 42.13 2.85
596 603 1.211703 TCACAGAAGTGGGTGCAAGAA 59.788 47.619 0.00 0.00 45.91 2.52
597 604 0.836606 TCACAGAAGTGGGTGCAAGA 59.163 50.000 0.00 0.00 45.91 3.02
598 605 0.947244 GTCACAGAAGTGGGTGCAAG 59.053 55.000 0.00 0.00 45.91 4.01
599 606 0.465460 GGTCACAGAAGTGGGTGCAA 60.465 55.000 0.00 0.00 45.91 4.08
600 607 1.148273 GGTCACAGAAGTGGGTGCA 59.852 57.895 0.00 0.00 45.91 4.57
601 608 0.685097 TAGGTCACAGAAGTGGGTGC 59.315 55.000 0.00 0.00 45.91 5.01
602 609 2.232452 CTCTAGGTCACAGAAGTGGGTG 59.768 54.545 0.00 0.00 45.91 4.61
603 610 2.110188 TCTCTAGGTCACAGAAGTGGGT 59.890 50.000 0.00 0.00 45.91 4.51
604 611 2.757868 CTCTCTAGGTCACAGAAGTGGG 59.242 54.545 0.00 0.00 45.91 4.61
605 612 2.757868 CCTCTCTAGGTCACAGAAGTGG 59.242 54.545 0.00 0.00 39.03 4.00
606 613 2.757868 CCCTCTCTAGGTCACAGAAGTG 59.242 54.545 0.00 0.00 41.89 3.16
607 614 2.650322 TCCCTCTCTAGGTCACAGAAGT 59.350 50.000 0.00 0.00 41.89 3.01
608 615 3.374042 TCCCTCTCTAGGTCACAGAAG 57.626 52.381 0.00 0.00 41.89 2.85
609 616 3.702792 CTTCCCTCTCTAGGTCACAGAA 58.297 50.000 0.00 0.00 41.89 3.02
610 617 2.621929 GCTTCCCTCTCTAGGTCACAGA 60.622 54.545 0.00 0.00 41.89 3.41
611 618 1.754226 GCTTCCCTCTCTAGGTCACAG 59.246 57.143 0.00 0.00 41.89 3.66
612 619 1.077169 TGCTTCCCTCTCTAGGTCACA 59.923 52.381 0.00 0.00 41.89 3.58
613 620 1.853963 TGCTTCCCTCTCTAGGTCAC 58.146 55.000 0.00 0.00 41.89 3.67
614 621 2.623418 TTGCTTCCCTCTCTAGGTCA 57.377 50.000 0.00 0.00 41.89 4.02
615 622 3.034635 TCATTGCTTCCCTCTCTAGGTC 58.965 50.000 0.00 0.00 41.89 3.85
616 623 3.121929 TCATTGCTTCCCTCTCTAGGT 57.878 47.619 0.00 0.00 41.89 3.08
617 624 4.347583 AGATTCATTGCTTCCCTCTCTAGG 59.652 45.833 0.00 0.00 43.25 3.02
618 625 5.549742 AGATTCATTGCTTCCCTCTCTAG 57.450 43.478 0.00 0.00 0.00 2.43
619 626 5.426509 TCAAGATTCATTGCTTCCCTCTCTA 59.573 40.000 0.00 0.00 0.00 2.43
620 627 4.226846 TCAAGATTCATTGCTTCCCTCTCT 59.773 41.667 0.00 0.00 0.00 3.10
647 654 2.165641 TGGTAGTGCTGGACTCAATACG 59.834 50.000 4.68 0.00 36.28 3.06
800 819 0.460311 CGCCGAGGAGGAAACTGTAT 59.540 55.000 0.00 0.00 44.43 2.29
827 846 0.179043 TGTTTTGCCTGCCGTAGTCA 60.179 50.000 0.00 0.00 0.00 3.41
848 867 2.679716 GGCTTGGACCATGCCTCT 59.320 61.111 33.80 0.00 46.74 3.69
919 941 4.039357 CGTGCTCCTCGACGGTGT 62.039 66.667 0.00 0.00 31.84 4.16
975 1008 5.817212 CCTCCCTGACCAGGTTAGGATCA 62.817 56.522 28.71 12.83 45.64 2.92
1086 1122 4.365514 TCTGTGCTTAACCCATTTCTCA 57.634 40.909 0.00 0.00 0.00 3.27
1098 1134 4.081087 GGGTTGAGTATCCTTCTGTGCTTA 60.081 45.833 0.00 0.00 0.00 3.09
1166 1208 4.342352 AACGCTATCAAAAAGTGCTAGC 57.658 40.909 8.10 8.10 44.87 3.42
1172 1214 5.493133 TGTCACAAACGCTATCAAAAAGT 57.507 34.783 0.00 0.00 0.00 2.66
1185 1227 1.135803 ACACGCACACTTGTCACAAAC 60.136 47.619 0.00 0.00 0.00 2.93
1203 1245 0.038251 AAGCGAGCGAATCAGTCACA 60.038 50.000 0.00 0.00 0.00 3.58
1204 1246 1.909376 TAAGCGAGCGAATCAGTCAC 58.091 50.000 0.00 0.00 0.00 3.67
1390 1440 6.461509 GCAGTTGAAAAATCCTTCTTCCTTCA 60.462 38.462 0.00 0.00 0.00 3.02
1657 1914 4.080863 ACAAGGGAATCGAGCTTCTATTGT 60.081 41.667 12.36 12.36 33.24 2.71
1831 2090 5.782893 GGCTGTTATCTCTACAGTCTGAT 57.217 43.478 6.91 0.00 43.22 2.90
2601 4298 5.438761 AACTTCTATGTCAACTTGGCAAC 57.561 39.130 0.00 0.00 34.67 4.17
2964 5439 9.559732 AAATTCAGATTGTCACATTCCGATATA 57.440 29.630 0.00 0.00 0.00 0.86
3763 7976 6.157645 AGCCTATCTGGAATCGATAATGGATT 59.842 38.462 0.00 0.00 38.35 3.01
3781 7994 3.217626 AGTATTTTGCTGGCAGCCTATC 58.782 45.455 34.58 19.57 41.51 2.08
4539 10304 4.479993 GCTCCTGCACTCGGCCAT 62.480 66.667 2.24 0.00 43.89 4.40
4708 11212 1.134788 GTCCCGATCCTCAAATCACGT 60.135 52.381 0.00 0.00 0.00 4.49
4945 11450 9.768662 ATCAAACAAAAACTTTCTTAGATGCAT 57.231 25.926 0.00 0.00 0.00 3.96
4995 11500 4.020839 GTGGCAAGGTGGAAGTAGTACTAA 60.021 45.833 3.61 0.00 0.00 2.24
5024 11529 5.957842 CTAATAAGCACAAAACACCTGGA 57.042 39.130 0.00 0.00 0.00 3.86
5046 11551 5.006746 GCACTTATGTTGTCAGTATACCAGC 59.993 44.000 0.00 0.00 0.00 4.85
5049 11554 6.106673 AGTGCACTTATGTTGTCAGTATACC 58.893 40.000 15.25 0.00 0.00 2.73
5063 11568 4.324331 GGGAAGGACCTAAAGTGCACTTAT 60.324 45.833 31.31 22.03 39.79 1.73
5064 11569 3.008704 GGGAAGGACCTAAAGTGCACTTA 59.991 47.826 31.31 17.99 39.79 2.24
5146 11651 5.680665 GCTTGCATCCTTTTCCCAATTAGAG 60.681 44.000 0.00 0.00 0.00 2.43
5185 11690 4.614284 CGATCAAGTCATTGTTTGTGCTTC 59.386 41.667 0.00 0.00 37.68 3.86
5196 11701 2.095059 GCAACAAGCCGATCAAGTCATT 60.095 45.455 0.00 0.00 37.23 2.57
5451 11957 9.498176 AATAAATGTACTCACGGTTTTTAGTCT 57.502 29.630 0.00 0.00 0.00 3.24
5456 11962 9.974980 ATTTCAATAAATGTACTCACGGTTTTT 57.025 25.926 0.00 0.00 33.97 1.94
5471 11977 9.143631 GCAGCAACTCAAGTAATTTCAATAAAT 57.856 29.630 0.00 0.00 36.87 1.40
5472 11978 8.140628 TGCAGCAACTCAAGTAATTTCAATAAA 58.859 29.630 0.00 0.00 0.00 1.40
5547 12066 7.327975 TCGTAAAGAATCATTGTCACCTATGT 58.672 34.615 0.00 0.00 0.00 2.29
5548 12067 7.770801 TCGTAAAGAATCATTGTCACCTATG 57.229 36.000 0.00 0.00 0.00 2.23
5549 12068 8.041323 ACTTCGTAAAGAATCATTGTCACCTAT 58.959 33.333 0.00 0.00 38.34 2.57
5689 12209 1.762957 AGATATCCTTGTCGTGGTGGG 59.237 52.381 0.00 0.00 0.00 4.61
5717 12237 0.605319 GCCTGAATTGGTGGACGTCA 60.605 55.000 18.91 0.27 0.00 4.35
5761 12281 1.072505 GGTTCCTTGGACGCCTTGA 59.927 57.895 0.00 0.00 0.00 3.02
5816 12336 4.943705 AGTGCAAAATTCTGACCGATACAT 59.056 37.500 0.00 0.00 0.00 2.29
5912 12432 0.105224 TCATTACGGTATGTGGGGCG 59.895 55.000 0.00 0.00 0.00 6.13
6073 12611 6.723977 TCTTTATTACCAAAACAGAGGGCAAT 59.276 34.615 0.00 0.00 0.00 3.56
6079 12617 8.792633 TGTTGGATCTTTATTACCAAAACAGAG 58.207 33.333 0.00 0.00 42.71 3.35
6098 12636 1.212688 TCGCCCTGAATCATGTTGGAT 59.787 47.619 0.00 0.00 0.00 3.41
6141 12679 5.106475 GCACCATAGATACGTTTGGTCAAAA 60.106 40.000 0.00 0.00 40.44 2.44
6188 12733 1.003223 GTGTTACACCTTGTGAACGCC 60.003 52.381 3.79 0.00 36.96 5.68
6267 12812 6.590292 CACTAGTATGGGTAGTTGTTCTTGTG 59.410 42.308 0.00 0.00 0.00 3.33
6268 12813 6.698380 CACTAGTATGGGTAGTTGTTCTTGT 58.302 40.000 0.00 0.00 0.00 3.16
6270 12815 5.338137 GGCACTAGTATGGGTAGTTGTTCTT 60.338 44.000 0.00 0.00 0.00 2.52
6281 12826 2.965831 TGCTCTAAGGCACTAGTATGGG 59.034 50.000 0.00 0.00 38.49 4.00
6287 12832 2.961741 TGGAGATGCTCTAAGGCACTAG 59.038 50.000 0.00 0.00 45.36 2.57
6296 12841 1.823295 GGCCGTTGGAGATGCTCTA 59.177 57.895 0.00 0.00 0.00 2.43
6358 12905 3.732892 CGCGACAAAATGCCCCGT 61.733 61.111 0.00 0.00 0.00 5.28
6365 12912 2.870372 GCTGGAGCGCGACAAAAT 59.130 55.556 12.10 0.00 0.00 1.82
6426 12973 4.185413 CGAGCTAGCGCCTTTTCA 57.815 55.556 13.17 0.00 36.60 2.69
6782 13357 1.704628 TCCTGAAAGTTCATCTGGCCA 59.295 47.619 4.71 4.71 36.46 5.36
6797 13372 1.103803 GGAGCGTGTAGACATCCTGA 58.896 55.000 4.47 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.