Multiple sequence alignment - TraesCS3A01G531900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G531900 chr3A 100.000 3915 0 0 1 3915 744667448 744663534 0.000000e+00 7230.0
1 TraesCS3A01G531900 chr3A 80.891 1167 164 38 2063 3210 744469353 744468227 0.000000e+00 865.0
2 TraesCS3A01G531900 chr3A 82.139 991 95 37 2191 3150 744614468 744613529 0.000000e+00 774.0
3 TraesCS3A01G531900 chr3A 82.329 249 34 4 1643 1883 653525556 653525310 1.430000e-49 207.0
4 TraesCS3A01G531900 chr3A 85.075 201 30 0 3539 3739 744467970 744467770 5.130000e-49 206.0
5 TraesCS3A01G531900 chr3D 86.136 3527 260 103 456 3848 610431803 610428372 0.000000e+00 3592.0
6 TraesCS3A01G531900 chr3D 82.325 1041 136 31 2193 3210 610375810 610374795 0.000000e+00 859.0
7 TraesCS3A01G531900 chr3D 85.179 560 45 16 2191 2739 610420058 610419526 1.240000e-149 540.0
8 TraesCS3A01G531900 chr3D 84.305 223 33 2 3518 3739 610374559 610374338 2.370000e-52 217.0
9 TraesCS3A01G531900 chr3D 82.667 225 31 3 1643 1859 517895213 517894989 3.990000e-45 193.0
10 TraesCS3A01G531900 chr3D 92.857 126 6 3 294 418 610431930 610431807 3.110000e-41 180.0
11 TraesCS3A01G531900 chr3D 83.898 118 9 5 12 121 610432378 610432263 1.920000e-18 104.0
12 TraesCS3A01G531900 chrUn 88.283 1101 93 22 2043 3135 43094428 43095500 0.000000e+00 1286.0
13 TraesCS3A01G531900 chrUn 88.283 1101 93 22 2043 3135 43260130 43259058 0.000000e+00 1286.0
14 TraesCS3A01G531900 chrUn 88.283 1101 93 22 2043 3135 262841284 262842356 0.000000e+00 1286.0
15 TraesCS3A01G531900 chrUn 88.283 1101 93 22 2043 3135 293233251 293234323 0.000000e+00 1286.0
16 TraesCS3A01G531900 chrUn 86.347 835 62 25 957 1753 43093399 43094219 0.000000e+00 863.0
17 TraesCS3A01G531900 chrUn 86.277 838 63 25 957 1756 43261159 43260336 0.000000e+00 863.0
18 TraesCS3A01G531900 chrUn 86.347 835 62 25 957 1753 262840255 262841075 0.000000e+00 863.0
19 TraesCS3A01G531900 chrUn 86.347 835 62 25 957 1753 293232222 293233042 0.000000e+00 863.0
20 TraesCS3A01G531900 chrUn 87.151 179 12 6 299 467 43092852 43093029 3.990000e-45 193.0
21 TraesCS3A01G531900 chrUn 87.151 179 12 6 299 467 43261706 43261529 3.990000e-45 193.0
22 TraesCS3A01G531900 chrUn 87.151 179 12 6 299 467 262839708 262839885 3.990000e-45 193.0
23 TraesCS3A01G531900 chrUn 87.151 179 12 6 299 467 293231675 293231852 3.990000e-45 193.0
24 TraesCS3A01G531900 chrUn 78.472 288 29 16 1546 1803 2677716 2678000 1.460000e-34 158.0
25 TraesCS3A01G531900 chrUn 100.000 30 0 0 895 924 43093309 43093338 5.460000e-04 56.5
26 TraesCS3A01G531900 chrUn 100.000 30 0 0 895 924 43261249 43261220 5.460000e-04 56.5
27 TraesCS3A01G531900 chrUn 100.000 30 0 0 895 924 262840165 262840194 5.460000e-04 56.5
28 TraesCS3A01G531900 chrUn 100.000 30 0 0 895 924 293232132 293232161 5.460000e-04 56.5
29 TraesCS3A01G531900 chr4A 85.286 1033 112 22 1138 2158 229713424 229714428 0.000000e+00 1029.0
30 TraesCS3A01G531900 chr4A 85.866 941 95 20 1138 2067 220151464 220152377 0.000000e+00 966.0
31 TraesCS3A01G531900 chr4A 79.874 159 24 6 3208 3361 37010214 37010369 4.140000e-20 110.0
32 TraesCS3A01G531900 chr4A 89.583 48 5 0 3318 3365 7738272 7738319 1.170000e-05 62.1
33 TraesCS3A01G531900 chr1A 85.314 1035 107 26 1138 2158 89966945 89965942 0.000000e+00 1027.0
34 TraesCS3A01G531900 chr1A 78.947 114 15 6 3261 3365 575468886 575468773 7.020000e-08 69.4
35 TraesCS3A01G531900 chr4B 91.800 561 39 4 2231 2785 543065799 543066358 0.000000e+00 774.0
36 TraesCS3A01G531900 chr4B 84.800 750 57 27 897 1622 543064414 543065130 0.000000e+00 701.0
37 TraesCS3A01G531900 chr4B 81.848 617 88 9 1637 2248 543065177 543065774 7.550000e-137 497.0
38 TraesCS3A01G531900 chr1B 91.304 529 36 4 1321 1848 218342475 218342994 0.000000e+00 713.0
39 TraesCS3A01G531900 chr1B 94.872 39 1 1 3332 3370 550270830 550270867 4.220000e-05 60.2
40 TraesCS3A01G531900 chr1D 81.172 802 75 45 1170 1924 44743489 44744261 3.390000e-160 575.0
41 TraesCS3A01G531900 chr1D 81.172 802 75 45 1170 1924 459697850 459697078 3.390000e-160 575.0
42 TraesCS3A01G531900 chr1D 87.500 104 13 0 3207 3310 461133207 461133104 1.910000e-23 121.0
43 TraesCS3A01G531900 chr1D 89.062 64 6 1 1744 1806 21541815 21541752 1.170000e-10 78.7
44 TraesCS3A01G531900 chr1D 95.349 43 2 0 230 272 203596529 203596571 7.020000e-08 69.4
45 TraesCS3A01G531900 chr7B 85.629 167 15 6 3207 3364 428829539 428829373 2.420000e-37 167.0
46 TraesCS3A01G531900 chr7B 93.407 91 5 1 3210 3300 383868795 383868706 2.450000e-27 134.0
47 TraesCS3A01G531900 chr3B 85.621 153 18 4 3211 3362 733603232 733603083 1.460000e-34 158.0
48 TraesCS3A01G531900 chr7D 90.196 102 9 1 3210 3311 388722883 388722783 8.830000e-27 132.0
49 TraesCS3A01G531900 chr5A 81.871 171 18 5 3205 3362 154620099 154620269 8.830000e-27 132.0
50 TraesCS3A01G531900 chr5A 78.238 193 29 10 3191 3372 640351222 640351032 1.150000e-20 111.0
51 TraesCS3A01G531900 chr5D 81.818 165 20 7 3211 3365 372452946 372452782 3.170000e-26 130.0
52 TraesCS3A01G531900 chr7A 95.349 43 2 0 230 272 667352722 667352764 7.020000e-08 69.4
53 TraesCS3A01G531900 chr7A 95.000 40 1 1 2867 2906 554854218 554854256 1.170000e-05 62.1
54 TraesCS3A01G531900 chr5B 85.075 67 5 5 3298 3364 231266492 231266431 3.270000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G531900 chr3A 744663534 744667448 3914 True 7230.000000 7230 100.000000 1 3915 1 chr3A.!!$R3 3914
1 TraesCS3A01G531900 chr3A 744613529 744614468 939 True 774.000000 774 82.139000 2191 3150 1 chr3A.!!$R2 959
2 TraesCS3A01G531900 chr3A 744467770 744469353 1583 True 535.500000 865 82.983000 2063 3739 2 chr3A.!!$R4 1676
3 TraesCS3A01G531900 chr3D 610428372 610432378 4006 True 1292.000000 3592 87.630333 12 3848 3 chr3D.!!$R4 3836
4 TraesCS3A01G531900 chr3D 610419526 610420058 532 True 540.000000 540 85.179000 2191 2739 1 chr3D.!!$R2 548
5 TraesCS3A01G531900 chr3D 610374338 610375810 1472 True 538.000000 859 83.315000 2193 3739 2 chr3D.!!$R3 1546
6 TraesCS3A01G531900 chrUn 43092852 43095500 2648 False 599.625000 1286 90.445250 299 3135 4 chrUn.!!$F2 2836
7 TraesCS3A01G531900 chrUn 43259058 43261706 2648 True 599.625000 1286 90.427750 299 3135 4 chrUn.!!$R1 2836
8 TraesCS3A01G531900 chrUn 262839708 262842356 2648 False 599.625000 1286 90.445250 299 3135 4 chrUn.!!$F3 2836
9 TraesCS3A01G531900 chrUn 293231675 293234323 2648 False 599.625000 1286 90.445250 299 3135 4 chrUn.!!$F4 2836
10 TraesCS3A01G531900 chr4A 229713424 229714428 1004 False 1029.000000 1029 85.286000 1138 2158 1 chr4A.!!$F4 1020
11 TraesCS3A01G531900 chr4A 220151464 220152377 913 False 966.000000 966 85.866000 1138 2067 1 chr4A.!!$F3 929
12 TraesCS3A01G531900 chr1A 89965942 89966945 1003 True 1027.000000 1027 85.314000 1138 2158 1 chr1A.!!$R1 1020
13 TraesCS3A01G531900 chr4B 543064414 543066358 1944 False 657.333333 774 86.149333 897 2785 3 chr4B.!!$F1 1888
14 TraesCS3A01G531900 chr1B 218342475 218342994 519 False 713.000000 713 91.304000 1321 1848 1 chr1B.!!$F1 527
15 TraesCS3A01G531900 chr1D 44743489 44744261 772 False 575.000000 575 81.172000 1170 1924 1 chr1D.!!$F1 754
16 TraesCS3A01G531900 chr1D 459697078 459697850 772 True 575.000000 575 81.172000 1170 1924 1 chr1D.!!$R2 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 1183 0.033504 CAGCTATAACCCCGCATCGT 59.966 55.0 0.00 0.0 0.0 3.73 F
1147 1399 0.465705 ATTCATGAGGATCCGTGCGT 59.534 50.0 5.98 0.0 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2670 0.538584 TGCATTGCAACACCCAACAA 59.461 45.000 9.33 0.0 34.76 2.83 R
3116 3601 1.812571 CATTCAGCAAGGTTTACGGCT 59.187 47.619 0.00 0.0 35.44 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.546778 TCGATAGCCAAAGCCTAAACG 58.453 47.619 0.00 0.00 41.25 3.60
21 22 1.597663 CGATAGCCAAAGCCTAAACGG 59.402 52.381 0.00 0.00 41.25 4.44
91 99 3.043418 TCCAGCATGATGAGATTCCAGA 58.957 45.455 13.69 0.00 39.69 3.86
98 106 5.557866 CATGATGAGATTCCAGATGCCTAA 58.442 41.667 0.00 0.00 0.00 2.69
101 109 3.114606 TGAGATTCCAGATGCCTAACCA 58.885 45.455 0.00 0.00 0.00 3.67
109 117 3.434024 CCAGATGCCTAACCACATCATCA 60.434 47.826 5.84 0.00 44.16 3.07
115 123 3.343617 CCTAACCACATCATCAACCGTT 58.656 45.455 0.00 0.00 0.00 4.44
116 124 4.509616 CCTAACCACATCATCAACCGTTA 58.490 43.478 0.00 0.00 0.00 3.18
117 125 5.123227 CCTAACCACATCATCAACCGTTAT 58.877 41.667 0.00 0.00 0.00 1.89
118 126 5.236478 CCTAACCACATCATCAACCGTTATC 59.764 44.000 0.00 0.00 0.00 1.75
120 128 3.199946 ACCACATCATCAACCGTTATCCT 59.800 43.478 0.00 0.00 0.00 3.24
121 129 3.561310 CCACATCATCAACCGTTATCCTG 59.439 47.826 0.00 0.00 0.00 3.86
122 130 4.191544 CACATCATCAACCGTTATCCTGT 58.808 43.478 0.00 0.00 0.00 4.00
123 131 5.356426 CACATCATCAACCGTTATCCTGTA 58.644 41.667 0.00 0.00 0.00 2.74
124 132 5.463392 CACATCATCAACCGTTATCCTGTAG 59.537 44.000 0.00 0.00 0.00 2.74
125 133 4.665833 TCATCAACCGTTATCCTGTAGG 57.334 45.455 0.00 0.00 0.00 3.18
134 142 2.353958 TCCTGTAGGAGGCGTCGT 59.646 61.111 6.84 6.84 42.47 4.34
135 143 1.303888 TCCTGTAGGAGGCGTCGTT 60.304 57.895 6.95 0.00 42.47 3.85
136 144 1.139095 CCTGTAGGAGGCGTCGTTC 59.861 63.158 6.95 2.94 34.01 3.95
137 145 1.139095 CTGTAGGAGGCGTCGTTCC 59.861 63.158 6.95 9.17 0.00 3.62
138 146 1.303888 TGTAGGAGGCGTCGTTCCT 60.304 57.895 19.66 19.66 45.56 3.36
142 150 3.437795 GAGGCGTCGTTCCTCGGA 61.438 66.667 3.53 0.00 40.51 4.55
143 151 3.398353 GAGGCGTCGTTCCTCGGAG 62.398 68.421 3.53 0.00 40.51 4.63
154 193 3.736252 CGTTCCTCGGAGCAATAAGTATG 59.264 47.826 0.00 0.00 35.71 2.39
171 210 4.442706 AGTATGCTAAAGATCGTGTTGGG 58.557 43.478 0.00 0.00 0.00 4.12
179 218 3.981071 AGATCGTGTTGGGATTTCTCA 57.019 42.857 0.00 0.00 0.00 3.27
186 225 1.401905 GTTGGGATTTCTCATGTCCGC 59.598 52.381 0.00 0.00 32.71 5.54
203 242 2.159014 TCCGCTTGTTTGTGTGACTAGT 60.159 45.455 0.00 0.00 0.00 2.57
215 254 4.455533 TGTGTGACTAGTAAATCCGTACGT 59.544 41.667 15.21 0.00 0.00 3.57
221 260 5.413499 ACTAGTAAATCCGTACGTGCAATT 58.587 37.500 15.21 5.66 0.00 2.32
224 263 4.873827 AGTAAATCCGTACGTGCAATTCAT 59.126 37.500 15.21 0.00 0.00 2.57
225 264 3.673746 AATCCGTACGTGCAATTCATG 57.326 42.857 15.21 0.00 37.70 3.07
240 301 8.292448 GTGCAATTCATGTTCATATTAGGTAGG 58.708 37.037 0.00 0.00 0.00 3.18
293 354 7.887996 AGCGCTGAAATTAATTTTTGAATGA 57.112 28.000 10.39 0.00 0.00 2.57
294 355 8.483307 AGCGCTGAAATTAATTTTTGAATGAT 57.517 26.923 10.39 0.48 0.00 2.45
295 356 9.585099 AGCGCTGAAATTAATTTTTGAATGATA 57.415 25.926 10.39 0.00 0.00 2.15
317 488 1.171308 ACACATCTTGGATGCAGTGC 58.829 50.000 8.58 8.58 0.00 4.40
356 527 2.424601 CCATGATCAACACCATGTGACC 59.575 50.000 0.00 0.00 38.69 4.02
357 528 1.807139 TGATCAACACCATGTGACCG 58.193 50.000 0.49 0.00 36.96 4.79
408 588 3.766591 TGCTTGTTCAGGGTTCAGAAAAA 59.233 39.130 0.00 0.00 0.00 1.94
436 617 2.414293 GCTCTGCAAGATGCTTGTTCAG 60.414 50.000 8.74 8.25 45.62 3.02
464 645 2.559998 CAAAACGTGCTCAAACTGGT 57.440 45.000 0.00 0.00 0.00 4.00
506 696 5.970317 TCATCTTGCAATCAGTGTCAAAT 57.030 34.783 0.00 0.00 0.00 2.32
513 703 3.189910 GCAATCAGTGTCAAATCTGCAGA 59.810 43.478 20.79 20.79 0.00 4.26
516 706 3.807553 TCAGTGTCAAATCTGCAGACAA 58.192 40.909 20.97 1.47 43.16 3.18
536 726 5.300752 ACAAATCTGTAGACACAAGACAGG 58.699 41.667 1.73 0.00 40.81 4.00
537 727 4.543590 AATCTGTAGACACAAGACAGGG 57.456 45.455 1.73 0.00 40.81 4.45
544 734 2.433239 AGACACAAGACAGGGTAAACGT 59.567 45.455 0.00 0.00 0.00 3.99
546 736 3.613030 ACACAAGACAGGGTAAACGTTT 58.387 40.909 18.90 18.90 0.00 3.60
549 739 5.032220 CACAAGACAGGGTAAACGTTTTTC 58.968 41.667 20.19 12.44 0.00 2.29
578 768 0.889638 TCGACAGAGGAACGACTGCT 60.890 55.000 0.00 0.00 40.03 4.24
579 769 0.039074 CGACAGAGGAACGACTGCTT 60.039 55.000 0.00 0.00 40.03 3.91
581 771 0.753262 ACAGAGGAACGACTGCTTGT 59.247 50.000 0.00 0.00 40.03 3.16
586 776 3.128349 GAGGAACGACTGCTTGTAACAA 58.872 45.455 0.00 0.00 0.00 2.83
587 777 3.131396 AGGAACGACTGCTTGTAACAAG 58.869 45.455 0.00 0.00 0.00 3.16
618 813 2.036475 CTCCCACCGATGAATACAGAGG 59.964 54.545 0.00 0.00 34.33 3.69
622 817 4.444876 CCCACCGATGAATACAGAGGAAAT 60.445 45.833 0.00 0.00 33.10 2.17
623 818 5.221641 CCCACCGATGAATACAGAGGAAATA 60.222 44.000 0.00 0.00 33.10 1.40
625 820 6.936900 CCACCGATGAATACAGAGGAAATATT 59.063 38.462 0.00 0.00 33.10 1.28
626 821 7.445402 CCACCGATGAATACAGAGGAAATATTT 59.555 37.037 0.00 0.00 33.10 1.40
670 866 1.257743 GTGTCTCCTCCTGTGCTGTA 58.742 55.000 0.00 0.00 0.00 2.74
687 883 2.596862 CTGTACACGCGAAATCGATGAA 59.403 45.455 15.93 0.00 43.02 2.57
700 896 6.402550 CGAAATCGATGAACAAACAGAATCCT 60.403 38.462 0.00 0.00 43.02 3.24
708 904 4.351874 ACAAACAGAATCCTTTCTCCGA 57.648 40.909 0.00 0.00 40.28 4.55
745 962 0.954449 CTGGAGTGCAGTTGAGCAGG 60.954 60.000 2.99 0.00 46.69 4.85
748 965 1.085091 GAGTGCAGTTGAGCAGGATG 58.915 55.000 0.00 0.00 46.69 3.51
760 977 3.766644 CAGGATGCATTCTCCGTGA 57.233 52.632 3.86 0.00 37.88 4.35
761 978 1.293924 CAGGATGCATTCTCCGTGAC 58.706 55.000 3.86 0.00 37.88 3.67
762 979 0.179000 AGGATGCATTCTCCGTGACC 59.821 55.000 0.01 0.00 37.88 4.02
763 980 1.154205 GGATGCATTCTCCGTGACCG 61.154 60.000 0.00 0.00 0.00 4.79
764 981 0.179111 GATGCATTCTCCGTGACCGA 60.179 55.000 0.00 0.00 35.63 4.69
765 982 0.460284 ATGCATTCTCCGTGACCGAC 60.460 55.000 0.00 0.00 35.63 4.79
766 983 1.080093 GCATTCTCCGTGACCGACA 60.080 57.895 0.00 0.00 35.63 4.35
767 984 1.078759 GCATTCTCCGTGACCGACAG 61.079 60.000 0.00 0.00 35.63 3.51
768 985 0.243907 CATTCTCCGTGACCGACAGT 59.756 55.000 0.00 0.00 35.63 3.55
769 986 0.243907 ATTCTCCGTGACCGACAGTG 59.756 55.000 0.00 0.00 35.63 3.66
770 987 1.802337 TTCTCCGTGACCGACAGTGG 61.802 60.000 0.00 0.00 35.63 4.00
771 988 2.203379 TCCGTGACCGACAGTGGA 60.203 61.111 0.00 0.00 35.63 4.02
772 989 2.201436 CTCCGTGACCGACAGTGGAG 62.201 65.000 12.55 12.55 42.17 3.86
773 990 2.561956 CCGTGACCGACAGTGGAGT 61.562 63.158 0.00 0.00 35.63 3.85
774 991 1.371758 CGTGACCGACAGTGGAGTG 60.372 63.158 0.00 0.00 35.63 3.51
775 992 1.792118 CGTGACCGACAGTGGAGTGA 61.792 60.000 0.00 0.00 35.63 3.41
776 993 0.039074 GTGACCGACAGTGGAGTGAG 60.039 60.000 0.00 0.00 0.00 3.51
777 994 0.467474 TGACCGACAGTGGAGTGAGT 60.467 55.000 0.00 0.00 0.00 3.41
778 995 0.241481 GACCGACAGTGGAGTGAGTC 59.759 60.000 0.00 0.00 0.00 3.36
779 996 4.849336 CGACAGTGGAGTGAGTCG 57.151 61.111 0.00 0.00 46.12 4.18
781 998 2.342478 GACAGTGGAGTGAGTCGGT 58.658 57.895 0.00 0.00 0.00 4.69
782 999 0.039074 GACAGTGGAGTGAGTCGGTG 60.039 60.000 0.00 0.00 0.00 4.94
783 1000 0.467474 ACAGTGGAGTGAGTCGGTGA 60.467 55.000 0.00 0.00 0.00 4.02
784 1001 0.242286 CAGTGGAGTGAGTCGGTGAG 59.758 60.000 0.00 0.00 0.00 3.51
785 1002 0.896019 AGTGGAGTGAGTCGGTGAGG 60.896 60.000 0.00 0.00 0.00 3.86
794 1011 2.446994 TCGGTGAGGGTGGTGGTT 60.447 61.111 0.00 0.00 0.00 3.67
796 1013 2.813726 CGGTGAGGGTGGTGGTTGA 61.814 63.158 0.00 0.00 0.00 3.18
798 1015 0.112412 GGTGAGGGTGGTGGTTGATT 59.888 55.000 0.00 0.00 0.00 2.57
799 1016 1.480498 GGTGAGGGTGGTGGTTGATTT 60.480 52.381 0.00 0.00 0.00 2.17
812 1029 4.989797 GTGGTTGATTTGCACATTGATTGA 59.010 37.500 0.00 0.00 0.00 2.57
825 1042 7.338957 TGCACATTGATTGACACTAAATGGATA 59.661 33.333 7.57 0.00 33.50 2.59
865 1082 0.391263 CTGAGATGTGCAGCTGAGCA 60.391 55.000 20.43 15.41 43.35 4.26
866 1083 0.391263 TGAGATGTGCAGCTGAGCAG 60.391 55.000 20.43 0.00 46.69 4.24
889 1106 2.345244 CTGTGGCTTCTGCTCCGT 59.655 61.111 0.00 0.00 39.59 4.69
892 1109 4.704833 TGGCTTCTGCTCCGTGGC 62.705 66.667 0.00 0.00 39.59 5.01
928 1156 1.153920 CCAATTAAACCGCCCACGC 60.154 57.895 0.00 0.00 38.22 5.34
955 1183 0.033504 CAGCTATAACCCCGCATCGT 59.966 55.000 0.00 0.00 0.00 3.73
1072 1323 0.801067 CGGATGGTTCGTCTTCGTCC 60.801 60.000 0.00 0.00 38.33 4.79
1075 1326 0.531200 ATGGTTCGTCTTCGTCCCTC 59.469 55.000 0.00 0.00 38.33 4.30
1123 1375 2.158449 GCATCGAGTTCTTGGTTGACAG 59.842 50.000 0.00 0.00 0.00 3.51
1124 1376 3.653344 CATCGAGTTCTTGGTTGACAGA 58.347 45.455 0.00 0.00 0.00 3.41
1147 1399 0.465705 ATTCATGAGGATCCGTGCGT 59.534 50.000 5.98 0.00 0.00 5.24
1277 1529 4.549516 GCCGTCCTCGAGGTACGC 62.550 72.222 32.85 26.42 42.26 4.42
1278 1530 3.885521 CCGTCCTCGAGGTACGCC 61.886 72.222 32.85 18.28 42.26 5.68
1279 1531 4.233635 CGTCCTCGAGGTACGCCG 62.234 72.222 29.93 21.64 42.26 6.46
1280 1532 4.549516 GTCCTCGAGGTACGCCGC 62.550 72.222 30.17 9.73 42.26 6.53
1315 1567 2.746362 CGCTGGATCTTGCTTCTTTCTT 59.254 45.455 8.37 0.00 0.00 2.52
1316 1568 3.181512 CGCTGGATCTTGCTTCTTTCTTC 60.182 47.826 8.37 0.00 0.00 2.87
1325 1594 4.271696 TGCTTCTTTCTTCCGATCTGAA 57.728 40.909 0.00 0.00 0.00 3.02
1330 1599 5.730296 TCTTTCTTCCGATCTGAACTCTT 57.270 39.130 0.00 0.00 0.00 2.85
1363 1636 3.746949 CTGCCAGATCCTCCACGGC 62.747 68.421 0.00 0.00 43.28 5.68
1491 1770 1.225704 CTCCATGGTGCCCTTCTCC 59.774 63.158 12.58 0.00 0.00 3.71
1520 1799 1.221414 GCTTCGTGCATACCTCATCC 58.779 55.000 0.00 0.00 42.31 3.51
1521 1800 1.202580 GCTTCGTGCATACCTCATCCT 60.203 52.381 0.00 0.00 42.31 3.24
1753 2064 5.462068 CCTGAACTAATGAAATGCGACGATA 59.538 40.000 0.00 0.00 0.00 2.92
1754 2065 6.019075 CCTGAACTAATGAAATGCGACGATAA 60.019 38.462 0.00 0.00 0.00 1.75
1759 2070 9.567848 AACTAATGAAATGCGACGATAATTTTT 57.432 25.926 0.00 0.00 0.00 1.94
1780 2091 9.651913 ATTTTTACATATGGATGTTGTTGTTCC 57.348 29.630 7.80 0.00 44.18 3.62
1782 2093 7.767250 TTACATATGGATGTTGTTGTTCCAA 57.233 32.000 7.80 0.00 44.18 3.53
1816 2169 8.768501 TCAAGATACTTGTGATAGGTGTATCT 57.231 34.615 10.56 0.00 46.51 1.98
1844 2197 3.564235 TTGCTGCAGCTTAATTCACTG 57.436 42.857 36.61 0.00 42.66 3.66
1886 2247 2.022428 ACCAGGGGAGGTGTGTATCATA 60.022 50.000 0.00 0.00 41.30 2.15
1896 2257 3.054655 GGTGTGTATCATAAGGGTGGTGT 60.055 47.826 0.00 0.00 0.00 4.16
1900 2261 5.221945 TGTGTATCATAAGGGTGGTGTTGAA 60.222 40.000 0.00 0.00 0.00 2.69
1948 2309 1.350665 GCACATTACTTACCGCCGC 59.649 57.895 0.00 0.00 0.00 6.53
1958 2319 2.218603 CTTACCGCCGCATATTTTCCT 58.781 47.619 0.00 0.00 0.00 3.36
2082 2445 6.323739 TGAATGGAAAGAACCTTTAAAGCAGT 59.676 34.615 9.86 0.53 0.00 4.40
2138 2506 4.298626 TCATCAAGTCCTATAGGTTGCCT 58.701 43.478 18.51 7.75 37.71 4.75
2168 2536 3.430651 GGCATATGGTCCATGGTTTGTTG 60.431 47.826 15.10 5.42 0.00 3.33
2406 2842 2.162408 GGTTGCAGATTGTAAGTCAGCC 59.838 50.000 0.00 0.00 0.00 4.85
2478 2917 2.366916 GGATGTGTGCAGGTATAGCTCT 59.633 50.000 0.26 0.00 0.00 4.09
2636 3075 5.484173 TGTTGCTAATTTATGCTTCTCCG 57.516 39.130 0.00 0.00 0.00 4.63
2644 3086 7.377131 GCTAATTTATGCTTCTCCGTTTGAATC 59.623 37.037 0.00 0.00 0.00 2.52
2770 3221 4.495565 TCCAGGTACCTTTTCTTGTCCTA 58.504 43.478 13.15 0.00 0.00 2.94
2851 3311 0.537371 AACTTTGGACAGGAAGCCCG 60.537 55.000 0.00 0.00 37.58 6.13
3054 3538 3.068024 GTGTCATGTGGATGTGGTTGTTT 59.932 43.478 0.00 0.00 0.00 2.83
3055 3539 3.703556 TGTCATGTGGATGTGGTTGTTTT 59.296 39.130 0.00 0.00 0.00 2.43
3111 3595 9.542462 GTCTAAACAGTAATGACCAGCAATATA 57.458 33.333 0.00 0.00 0.00 0.86
3173 3662 6.306987 ACCAGATGTCCACTTATTTTGAACT 58.693 36.000 0.00 0.00 0.00 3.01
3217 3706 6.388689 AGGAATACCACAAACATATACTCCCA 59.611 38.462 0.00 0.00 38.94 4.37
3224 3713 3.447918 AACATATACTCCCACCGTTCG 57.552 47.619 0.00 0.00 0.00 3.95
3258 3747 8.286191 AGCCTTTTTAGAGATTTCAATACAGG 57.714 34.615 0.00 0.00 0.00 4.00
3259 3748 6.975197 GCCTTTTTAGAGATTTCAATACAGGC 59.025 38.462 0.00 0.00 34.23 4.85
3268 3757 8.099537 AGAGATTTCAATACAGGCTACATATGG 58.900 37.037 7.80 0.00 0.00 2.74
3335 3824 8.936070 TGATGCATATTGAAATTTCTGAAAGG 57.064 30.769 18.64 5.47 0.00 3.11
3336 3825 8.533657 TGATGCATATTGAAATTTCTGAAAGGT 58.466 29.630 18.64 0.00 0.00 3.50
3337 3826 8.937634 ATGCATATTGAAATTTCTGAAAGGTC 57.062 30.769 18.64 8.54 0.00 3.85
3338 3827 8.125978 TGCATATTGAAATTTCTGAAAGGTCT 57.874 30.769 18.64 0.00 0.00 3.85
3341 3830 9.918630 CATATTGAAATTTCTGAAAGGTCTTGT 57.081 29.630 18.64 2.68 0.00 3.16
3419 3912 5.065090 CGAACACATTGATAGAATTGCAGGA 59.935 40.000 0.00 0.00 0.00 3.86
3537 4106 3.795688 AAAAAGATCTCTCTGTGGCCA 57.204 42.857 0.00 0.00 0.00 5.36
3562 4132 6.100859 ACTTATGATCTTGGATCTCATGTGGT 59.899 38.462 8.66 0.00 32.20 4.16
3563 4133 4.849813 TGATCTTGGATCTCATGTGGTT 57.150 40.909 8.66 0.00 0.00 3.67
3569 4139 2.026915 TGGATCTCATGTGGTTCACCTG 60.027 50.000 0.00 0.00 36.82 4.00
3573 4143 1.075482 CATGTGGTTCACCTGGCCT 59.925 57.895 3.32 0.00 36.82 5.19
3725 4295 0.963856 TCGGCCTCGTACACATCTGT 60.964 55.000 0.00 0.00 37.69 3.41
3773 4364 1.876156 GAGCAACTTCCCAAGTGACTG 59.124 52.381 0.00 0.00 41.91 3.51
3848 4439 1.032794 TCGCTAATCGAGTGGATGCT 58.967 50.000 0.00 0.00 43.16 3.79
3849 4440 1.135046 CGCTAATCGAGTGGATGCTG 58.865 55.000 0.00 0.00 41.67 4.41
3850 4441 1.269257 CGCTAATCGAGTGGATGCTGA 60.269 52.381 0.00 0.00 41.67 4.26
3851 4442 2.799562 CGCTAATCGAGTGGATGCTGAA 60.800 50.000 0.00 0.00 41.67 3.02
3852 4443 2.541762 GCTAATCGAGTGGATGCTGAAC 59.458 50.000 0.00 0.00 34.93 3.18
3853 4444 1.645034 AATCGAGTGGATGCTGAACG 58.355 50.000 0.00 0.00 34.93 3.95
3854 4445 0.179100 ATCGAGTGGATGCTGAACGG 60.179 55.000 0.00 0.00 32.92 4.44
3855 4446 2.456119 CGAGTGGATGCTGAACGGC 61.456 63.158 0.00 0.00 0.00 5.68
3856 4447 2.045926 AGTGGATGCTGAACGGCC 60.046 61.111 0.00 0.00 0.00 6.13
3857 4448 2.045926 GTGGATGCTGAACGGCCT 60.046 61.111 0.00 0.00 0.00 5.19
3858 4449 1.675641 GTGGATGCTGAACGGCCTT 60.676 57.895 0.00 0.00 0.00 4.35
3859 4450 1.074775 TGGATGCTGAACGGCCTTT 59.925 52.632 0.00 0.00 0.00 3.11
3860 4451 1.243342 TGGATGCTGAACGGCCTTTG 61.243 55.000 0.00 0.00 0.00 2.77
3861 4452 1.244019 GGATGCTGAACGGCCTTTGT 61.244 55.000 0.00 0.00 0.00 2.83
3862 4453 0.598065 GATGCTGAACGGCCTTTGTT 59.402 50.000 0.00 0.00 0.00 2.83
3863 4454 1.810151 GATGCTGAACGGCCTTTGTTA 59.190 47.619 0.00 0.00 0.00 2.41
3864 4455 1.904287 TGCTGAACGGCCTTTGTTAT 58.096 45.000 0.00 0.00 0.00 1.89
3865 4456 1.539388 TGCTGAACGGCCTTTGTTATG 59.461 47.619 0.00 0.00 0.00 1.90
3866 4457 1.539827 GCTGAACGGCCTTTGTTATGT 59.460 47.619 0.00 0.00 0.00 2.29
3867 4458 2.030274 GCTGAACGGCCTTTGTTATGTT 60.030 45.455 0.00 0.00 0.00 2.71
3868 4459 3.821841 CTGAACGGCCTTTGTTATGTTC 58.178 45.455 0.00 4.02 36.98 3.18
3869 4460 3.482436 TGAACGGCCTTTGTTATGTTCT 58.518 40.909 14.36 0.00 37.27 3.01
3870 4461 3.500680 TGAACGGCCTTTGTTATGTTCTC 59.499 43.478 14.36 0.00 37.27 2.87
3871 4462 2.433436 ACGGCCTTTGTTATGTTCTCC 58.567 47.619 0.00 0.00 0.00 3.71
3872 4463 1.396996 CGGCCTTTGTTATGTTCTCCG 59.603 52.381 0.00 0.00 0.00 4.63
3873 4464 2.433436 GGCCTTTGTTATGTTCTCCGT 58.567 47.619 0.00 0.00 0.00 4.69
3874 4465 2.817844 GGCCTTTGTTATGTTCTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
3875 4466 3.254903 GGCCTTTGTTATGTTCTCCGTTT 59.745 43.478 0.00 0.00 0.00 3.60
3876 4467 4.456566 GGCCTTTGTTATGTTCTCCGTTTA 59.543 41.667 0.00 0.00 0.00 2.01
3877 4468 5.124936 GGCCTTTGTTATGTTCTCCGTTTAT 59.875 40.000 0.00 0.00 0.00 1.40
3878 4469 6.349860 GGCCTTTGTTATGTTCTCCGTTTATT 60.350 38.462 0.00 0.00 0.00 1.40
3879 4470 7.148205 GGCCTTTGTTATGTTCTCCGTTTATTA 60.148 37.037 0.00 0.00 0.00 0.98
3880 4471 7.908601 GCCTTTGTTATGTTCTCCGTTTATTAG 59.091 37.037 0.00 0.00 0.00 1.73
3881 4472 9.158233 CCTTTGTTATGTTCTCCGTTTATTAGA 57.842 33.333 0.00 0.00 0.00 2.10
3883 4474 9.715121 TTTGTTATGTTCTCCGTTTATTAGAGT 57.285 29.630 0.00 0.00 0.00 3.24
3884 4475 8.922058 TGTTATGTTCTCCGTTTATTAGAGTC 57.078 34.615 0.00 0.00 0.00 3.36
3885 4476 8.746530 TGTTATGTTCTCCGTTTATTAGAGTCT 58.253 33.333 0.00 0.00 0.00 3.24
3886 4477 9.235537 GTTATGTTCTCCGTTTATTAGAGTCTC 57.764 37.037 0.00 0.00 0.00 3.36
3887 4478 6.829229 TGTTCTCCGTTTATTAGAGTCTCA 57.171 37.500 0.00 0.00 0.00 3.27
3888 4479 6.618811 TGTTCTCCGTTTATTAGAGTCTCAC 58.381 40.000 0.00 0.00 0.00 3.51
3889 4480 5.831702 TCTCCGTTTATTAGAGTCTCACC 57.168 43.478 0.00 0.00 0.00 4.02
3890 4481 5.258841 TCTCCGTTTATTAGAGTCTCACCA 58.741 41.667 0.00 0.00 0.00 4.17
3891 4482 5.892119 TCTCCGTTTATTAGAGTCTCACCAT 59.108 40.000 0.00 0.00 0.00 3.55
3892 4483 6.039493 TCTCCGTTTATTAGAGTCTCACCATC 59.961 42.308 0.00 0.00 0.00 3.51
3893 4484 5.892119 TCCGTTTATTAGAGTCTCACCATCT 59.108 40.000 0.00 0.00 0.00 2.90
3894 4485 6.380274 TCCGTTTATTAGAGTCTCACCATCTT 59.620 38.462 0.00 0.00 0.00 2.40
3895 4486 6.477033 CCGTTTATTAGAGTCTCACCATCTTG 59.523 42.308 0.00 0.00 0.00 3.02
3896 4487 6.019479 CGTTTATTAGAGTCTCACCATCTTGC 60.019 42.308 0.00 0.00 0.00 4.01
3897 4488 6.798427 TTATTAGAGTCTCACCATCTTGCT 57.202 37.500 0.00 0.00 0.00 3.91
3898 4489 4.727507 TTAGAGTCTCACCATCTTGCTC 57.272 45.455 0.00 0.00 0.00 4.26
3899 4490 2.533916 AGAGTCTCACCATCTTGCTCA 58.466 47.619 1.94 0.00 0.00 4.26
3900 4491 2.233431 AGAGTCTCACCATCTTGCTCAC 59.767 50.000 1.94 0.00 0.00 3.51
3901 4492 2.233431 GAGTCTCACCATCTTGCTCACT 59.767 50.000 0.00 0.00 0.00 3.41
3902 4493 2.233431 AGTCTCACCATCTTGCTCACTC 59.767 50.000 0.00 0.00 0.00 3.51
3903 4494 2.233431 GTCTCACCATCTTGCTCACTCT 59.767 50.000 0.00 0.00 0.00 3.24
3904 4495 2.902486 TCTCACCATCTTGCTCACTCTT 59.098 45.455 0.00 0.00 0.00 2.85
3905 4496 4.081972 GTCTCACCATCTTGCTCACTCTTA 60.082 45.833 0.00 0.00 0.00 2.10
3906 4497 4.713814 TCTCACCATCTTGCTCACTCTTAT 59.286 41.667 0.00 0.00 0.00 1.73
3907 4498 5.016051 TCACCATCTTGCTCACTCTTATC 57.984 43.478 0.00 0.00 0.00 1.75
3908 4499 4.125703 CACCATCTTGCTCACTCTTATCC 58.874 47.826 0.00 0.00 0.00 2.59
3909 4500 4.036518 ACCATCTTGCTCACTCTTATCCT 58.963 43.478 0.00 0.00 0.00 3.24
3910 4501 4.472833 ACCATCTTGCTCACTCTTATCCTT 59.527 41.667 0.00 0.00 0.00 3.36
3911 4502 4.815308 CCATCTTGCTCACTCTTATCCTTG 59.185 45.833 0.00 0.00 0.00 3.61
3912 4503 4.478206 TCTTGCTCACTCTTATCCTTGG 57.522 45.455 0.00 0.00 0.00 3.61
3913 4504 2.698855 TGCTCACTCTTATCCTTGGC 57.301 50.000 0.00 0.00 0.00 4.52
3914 4505 1.908619 TGCTCACTCTTATCCTTGGCA 59.091 47.619 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.546778 CGTTTAGGCTTTGGCTATCGA 58.453 47.619 15.07 0.00 40.30 3.59
1 2 1.597663 CCGTTTAGGCTTTGGCTATCG 59.402 52.381 0.00 14.04 40.30 2.92
13 14 0.249955 TCGGGGTTTAGCCGTTTAGG 59.750 55.000 0.00 0.00 44.97 2.69
14 15 2.097680 TTCGGGGTTTAGCCGTTTAG 57.902 50.000 0.00 0.00 38.44 1.85
15 16 2.150390 GTTTCGGGGTTTAGCCGTTTA 58.850 47.619 0.00 0.00 38.44 2.01
16 17 0.953727 GTTTCGGGGTTTAGCCGTTT 59.046 50.000 0.00 0.00 38.44 3.60
17 18 0.179023 TGTTTCGGGGTTTAGCCGTT 60.179 50.000 0.00 0.00 38.44 4.44
18 19 0.886043 GTGTTTCGGGGTTTAGCCGT 60.886 55.000 0.00 0.00 38.44 5.68
19 20 1.871077 GTGTTTCGGGGTTTAGCCG 59.129 57.895 0.00 0.00 38.44 5.52
20 21 0.886043 ACGTGTTTCGGGGTTTAGCC 60.886 55.000 0.00 0.00 44.69 3.93
21 22 0.236449 CACGTGTTTCGGGGTTTAGC 59.764 55.000 7.58 0.00 44.69 3.09
31 32 4.683334 GCAGCGCCCACGTGTTTC 62.683 66.667 15.65 1.83 42.83 2.78
43 44 2.461110 GGAATGGTACCGTGCAGCG 61.461 63.158 14.44 0.00 40.95 5.18
45 46 1.016627 CATGGAATGGTACCGTGCAG 58.983 55.000 14.44 0.00 41.79 4.41
46 47 3.167189 CATGGAATGGTACCGTGCA 57.833 52.632 14.44 12.74 41.79 4.57
91 99 3.290710 GGTTGATGATGTGGTTAGGCAT 58.709 45.455 0.00 0.00 0.00 4.40
98 106 3.199946 AGGATAACGGTTGATGATGTGGT 59.800 43.478 3.07 0.00 0.00 4.16
101 109 4.487714 ACAGGATAACGGTTGATGATGT 57.512 40.909 3.07 0.00 0.00 3.06
118 126 1.139095 GAACGACGCCTCCTACAGG 59.861 63.158 0.00 0.00 46.82 4.00
120 128 1.303888 AGGAACGACGCCTCCTACA 60.304 57.895 15.57 0.00 40.42 2.74
121 129 1.432657 GAGGAACGACGCCTCCTAC 59.567 63.158 16.77 8.82 44.96 3.18
122 130 3.915575 GAGGAACGACGCCTCCTA 58.084 61.111 16.77 0.00 44.96 2.94
125 133 3.398353 CTCCGAGGAACGACGCCTC 62.398 68.421 10.52 10.52 46.74 4.70
126 134 3.441290 CTCCGAGGAACGACGCCT 61.441 66.667 0.00 0.00 45.77 5.52
129 137 0.099968 TATTGCTCCGAGGAACGACG 59.900 55.000 4.24 0.00 45.77 5.12
130 138 2.194271 CTTATTGCTCCGAGGAACGAC 58.806 52.381 4.24 0.00 45.77 4.34
131 139 1.822990 ACTTATTGCTCCGAGGAACGA 59.177 47.619 4.24 0.00 45.77 3.85
132 140 2.295253 ACTTATTGCTCCGAGGAACG 57.705 50.000 4.24 0.00 42.18 3.95
133 141 3.495001 GCATACTTATTGCTCCGAGGAAC 59.505 47.826 4.24 0.00 37.14 3.62
134 142 3.728845 GCATACTTATTGCTCCGAGGAA 58.271 45.455 4.66 4.66 37.14 3.36
135 143 3.386768 GCATACTTATTGCTCCGAGGA 57.613 47.619 0.00 0.00 37.14 3.71
143 151 7.178712 ACACGATCTTTAGCATACTTATTGC 57.821 36.000 0.00 0.00 40.45 3.56
144 152 8.064222 CCAACACGATCTTTAGCATACTTATTG 58.936 37.037 0.00 0.00 0.00 1.90
154 193 4.636206 AGAAATCCCAACACGATCTTTAGC 59.364 41.667 0.00 0.00 0.00 3.09
171 210 4.161333 CAAACAAGCGGACATGAGAAATC 58.839 43.478 0.00 0.00 0.00 2.17
179 218 1.333619 GTCACACAAACAAGCGGACAT 59.666 47.619 0.00 0.00 0.00 3.06
186 225 6.202188 ACGGATTTACTAGTCACACAAACAAG 59.798 38.462 0.00 0.00 0.00 3.16
203 242 4.632251 ACATGAATTGCACGTACGGATTTA 59.368 37.500 21.06 10.71 0.00 1.40
215 254 8.217111 TCCTACCTAATATGAACATGAATTGCA 58.783 33.333 0.00 0.00 0.00 4.08
250 311 7.223193 TCAGCGCTAATTACATAATTAACACGT 59.777 33.333 10.99 0.00 37.60 4.49
251 312 7.560700 TCAGCGCTAATTACATAATTAACACG 58.439 34.615 10.99 9.61 37.60 4.49
267 328 9.416794 TCATTCAAAAATTAATTTCAGCGCTAA 57.583 25.926 10.99 1.07 0.00 3.09
289 350 7.722728 ACTGCATCCAAGATGTGTAATATCATT 59.277 33.333 6.46 0.00 36.85 2.57
290 351 7.174426 CACTGCATCCAAGATGTGTAATATCAT 59.826 37.037 6.46 0.00 36.85 2.45
291 352 6.484308 CACTGCATCCAAGATGTGTAATATCA 59.516 38.462 6.46 0.00 36.85 2.15
292 353 6.567321 GCACTGCATCCAAGATGTGTAATATC 60.567 42.308 6.46 0.00 34.27 1.63
293 354 5.240183 GCACTGCATCCAAGATGTGTAATAT 59.760 40.000 6.46 0.00 0.00 1.28
294 355 4.576053 GCACTGCATCCAAGATGTGTAATA 59.424 41.667 6.46 0.00 0.00 0.98
295 356 3.379372 GCACTGCATCCAAGATGTGTAAT 59.621 43.478 6.46 0.00 0.00 1.89
296 357 2.749076 GCACTGCATCCAAGATGTGTAA 59.251 45.455 6.46 0.00 0.00 2.41
356 527 1.271379 ACAACTGGGGATGTTCCTTCG 60.271 52.381 0.00 0.00 36.57 3.79
357 528 2.586648 ACAACTGGGGATGTTCCTTC 57.413 50.000 0.00 0.00 36.57 3.46
368 539 1.171308 CATGCAGAGGAACAACTGGG 58.829 55.000 0.00 0.00 36.06 4.45
446 627 2.752903 AGAACCAGTTTGAGCACGTTTT 59.247 40.909 0.00 0.00 0.00 2.43
461 642 3.093814 TCAGGTTATCTGCGTAGAACCA 58.906 45.455 21.72 4.27 43.06 3.67
462 643 3.795623 TCAGGTTATCTGCGTAGAACC 57.204 47.619 14.53 14.53 43.06 3.62
463 644 5.348986 TGAATCAGGTTATCTGCGTAGAAC 58.651 41.667 7.47 1.72 43.06 3.01
464 645 5.592104 TGAATCAGGTTATCTGCGTAGAA 57.408 39.130 7.47 0.00 43.06 2.10
506 696 4.039124 TGTGTCTACAGATTTGTCTGCAGA 59.961 41.667 13.74 13.74 41.19 4.26
513 703 5.300752 CCTGTCTTGTGTCTACAGATTTGT 58.699 41.667 3.37 0.00 42.59 2.83
516 706 3.904339 ACCCTGTCTTGTGTCTACAGATT 59.096 43.478 3.37 0.00 42.59 2.40
527 717 4.096833 GGAAAAACGTTTACCCTGTCTTGT 59.903 41.667 15.03 0.00 0.00 3.16
529 719 4.096833 GTGGAAAAACGTTTACCCTGTCTT 59.903 41.667 24.43 11.04 0.00 3.01
531 721 3.628942 AGTGGAAAAACGTTTACCCTGTC 59.371 43.478 24.43 16.93 0.00 3.51
536 726 3.110358 GCACAGTGGAAAAACGTTTACC 58.890 45.455 22.20 22.20 0.00 2.85
537 727 4.023739 AGCACAGTGGAAAAACGTTTAC 57.976 40.909 15.03 8.75 0.00 2.01
544 734 2.354510 CTGTCGAAGCACAGTGGAAAAA 59.645 45.455 1.84 0.00 39.26 1.94
546 736 1.138069 TCTGTCGAAGCACAGTGGAAA 59.862 47.619 1.84 0.00 43.80 3.13
549 739 0.668706 CCTCTGTCGAAGCACAGTGG 60.669 60.000 1.84 8.18 46.40 4.00
623 818 9.634021 AAACTCTCCTCTGTTTCTTTAGAAAAT 57.366 29.630 6.50 0.00 44.58 1.82
625 820 8.893727 CAAAACTCTCCTCTGTTTCTTTAGAAA 58.106 33.333 0.89 0.89 41.29 2.52
626 821 8.047310 ACAAAACTCTCCTCTGTTTCTTTAGAA 58.953 33.333 0.00 0.00 35.63 2.10
630 825 5.946377 ACACAAAACTCTCCTCTGTTTCTTT 59.054 36.000 0.00 0.00 35.63 2.52
632 827 5.104259 ACACAAAACTCTCCTCTGTTTCT 57.896 39.130 0.00 0.00 35.63 2.52
633 828 5.119694 AGACACAAAACTCTCCTCTGTTTC 58.880 41.667 0.00 0.00 35.63 2.78
643 839 3.041946 ACAGGAGGAGACACAAAACTCT 58.958 45.455 0.00 0.00 34.11 3.24
670 866 1.424403 TGTTCATCGATTTCGCGTGT 58.576 45.000 5.77 0.00 39.60 4.49
687 883 4.040461 TCTCGGAGAAAGGATTCTGTTTGT 59.960 41.667 4.96 0.00 45.91 2.83
700 896 1.686587 TCAGCAACAGTCTCGGAGAAA 59.313 47.619 9.72 0.00 34.09 2.52
745 962 0.179111 TCGGTCACGGAGAATGCATC 60.179 55.000 0.00 0.00 41.39 3.91
748 965 1.078759 CTGTCGGTCACGGAGAATGC 61.079 60.000 0.00 0.00 41.39 3.56
760 977 1.516365 CGACTCACTCCACTGTCGGT 61.516 60.000 6.49 0.00 45.54 4.69
761 978 1.210413 CGACTCACTCCACTGTCGG 59.790 63.158 6.49 0.00 45.54 4.79
762 979 4.849336 CGACTCACTCCACTGTCG 57.151 61.111 0.00 0.00 44.41 4.35
763 980 0.039074 CACCGACTCACTCCACTGTC 60.039 60.000 0.00 0.00 0.00 3.51
764 981 0.467474 TCACCGACTCACTCCACTGT 60.467 55.000 0.00 0.00 0.00 3.55
765 982 0.242286 CTCACCGACTCACTCCACTG 59.758 60.000 0.00 0.00 0.00 3.66
766 983 0.896019 CCTCACCGACTCACTCCACT 60.896 60.000 0.00 0.00 0.00 4.00
767 984 1.587054 CCTCACCGACTCACTCCAC 59.413 63.158 0.00 0.00 0.00 4.02
768 985 1.606601 CCCTCACCGACTCACTCCA 60.607 63.158 0.00 0.00 0.00 3.86
769 986 1.606889 ACCCTCACCGACTCACTCC 60.607 63.158 0.00 0.00 0.00 3.85
770 987 1.587054 CACCCTCACCGACTCACTC 59.413 63.158 0.00 0.00 0.00 3.51
771 988 1.908793 CCACCCTCACCGACTCACT 60.909 63.158 0.00 0.00 0.00 3.41
772 989 2.207924 ACCACCCTCACCGACTCAC 61.208 63.158 0.00 0.00 0.00 3.51
773 990 2.200370 ACCACCCTCACCGACTCA 59.800 61.111 0.00 0.00 0.00 3.41
774 991 2.657237 CACCACCCTCACCGACTC 59.343 66.667 0.00 0.00 0.00 3.36
775 992 2.923035 CCACCACCCTCACCGACT 60.923 66.667 0.00 0.00 0.00 4.18
776 993 2.814835 AACCACCACCCTCACCGAC 61.815 63.158 0.00 0.00 0.00 4.79
777 994 2.446994 AACCACCACCCTCACCGA 60.447 61.111 0.00 0.00 0.00 4.69
778 995 2.124507 ATCAACCACCACCCTCACCG 62.125 60.000 0.00 0.00 0.00 4.94
779 996 0.112412 AATCAACCACCACCCTCACC 59.888 55.000 0.00 0.00 0.00 4.02
780 997 1.613437 CAAATCAACCACCACCCTCAC 59.387 52.381 0.00 0.00 0.00 3.51
781 998 1.993956 CAAATCAACCACCACCCTCA 58.006 50.000 0.00 0.00 0.00 3.86
782 999 0.603065 GCAAATCAACCACCACCCTC 59.397 55.000 0.00 0.00 0.00 4.30
783 1000 0.105760 TGCAAATCAACCACCACCCT 60.106 50.000 0.00 0.00 0.00 4.34
784 1001 0.033366 GTGCAAATCAACCACCACCC 59.967 55.000 0.00 0.00 0.00 4.61
785 1002 0.749649 TGTGCAAATCAACCACCACC 59.250 50.000 0.00 0.00 0.00 4.61
794 1011 5.456548 AGTGTCAATCAATGTGCAAATCA 57.543 34.783 0.00 0.00 0.00 2.57
796 1013 7.332430 CCATTTAGTGTCAATCAATGTGCAAAT 59.668 33.333 6.48 0.00 0.00 2.32
798 1015 6.015603 TCCATTTAGTGTCAATCAATGTGCAA 60.016 34.615 6.48 0.00 0.00 4.08
799 1016 5.476254 TCCATTTAGTGTCAATCAATGTGCA 59.524 36.000 6.48 0.00 0.00 4.57
812 1029 3.265737 TGCCACCAGTATCCATTTAGTGT 59.734 43.478 0.00 0.00 0.00 3.55
825 1042 3.247648 AGCTCAGCTGCCACCAGT 61.248 61.111 9.47 0.00 41.26 4.00
871 1088 3.123620 CGGAGCAGAAGCCACAGC 61.124 66.667 0.00 0.00 43.56 4.40
872 1089 2.031516 CACGGAGCAGAAGCCACAG 61.032 63.158 0.00 0.00 43.56 3.66
889 1106 3.458163 GGATCGAGGTCACGGCCA 61.458 66.667 2.24 0.00 0.00 5.36
892 1109 4.570663 GGCGGATCGAGGTCACGG 62.571 72.222 0.00 0.00 0.00 4.94
893 1110 4.570663 GGGCGGATCGAGGTCACG 62.571 72.222 0.00 0.00 0.00 4.35
984 1235 2.437359 ATTGTCTCCGCTGCTGCC 60.437 61.111 10.24 0.00 35.36 4.85
1123 1375 3.188048 GCACGGATCCTCATGAATCAATC 59.812 47.826 10.75 4.38 0.00 2.67
1124 1376 3.144506 GCACGGATCCTCATGAATCAAT 58.855 45.455 10.75 0.00 0.00 2.57
1287 1539 4.162690 AAGATCCAGCGGGCGGAC 62.163 66.667 0.00 2.79 34.69 4.79
1288 1540 4.161295 CAAGATCCAGCGGGCGGA 62.161 66.667 0.00 6.68 36.84 5.54
1315 1567 3.382865 CAGGATGAAGAGTTCAGATCGGA 59.617 47.826 0.00 0.00 43.98 4.55
1316 1568 3.715495 CAGGATGAAGAGTTCAGATCGG 58.285 50.000 0.00 0.00 43.98 4.18
1325 1594 0.671781 GCACACGCAGGATGAAGAGT 60.672 55.000 0.00 0.00 39.69 3.24
1330 1599 2.046988 CAGGCACACGCAGGATGA 60.047 61.111 0.00 0.00 39.69 2.92
1363 1636 4.135153 CTCACCAGGCCGACGAGG 62.135 72.222 0.00 0.00 44.97 4.63
1491 1770 3.351604 GCACGAAGCAAGAAGAACG 57.648 52.632 0.00 0.00 44.79 3.95
1517 1796 4.476479 AGCAAGGAAAACAGAGGATAGGAT 59.524 41.667 0.00 0.00 0.00 3.24
1518 1797 3.846588 AGCAAGGAAAACAGAGGATAGGA 59.153 43.478 0.00 0.00 0.00 2.94
1519 1798 4.080638 AGAGCAAGGAAAACAGAGGATAGG 60.081 45.833 0.00 0.00 0.00 2.57
1520 1799 4.874966 CAGAGCAAGGAAAACAGAGGATAG 59.125 45.833 0.00 0.00 0.00 2.08
1521 1800 4.287067 ACAGAGCAAGGAAAACAGAGGATA 59.713 41.667 0.00 0.00 0.00 2.59
1622 1901 0.179065 TCAGGATTCAGGAGCATGCG 60.179 55.000 13.01 0.00 0.00 4.73
1754 2065 9.651913 GGAACAACAACATCCATATGTAAAAAT 57.348 29.630 1.24 0.00 45.79 1.82
1774 2085 8.912988 AGTATCTTGAAATTCAACTTGGAACAA 58.087 29.630 4.03 0.00 36.34 2.83
1780 2091 9.903682 ATCACAAGTATCTTGAAATTCAACTTG 57.096 29.630 24.94 24.94 42.60 3.16
1816 2169 2.894763 AAGCTGCAGCAATTTTGTGA 57.105 40.000 38.24 0.00 45.16 3.58
1844 2197 7.201857 CCTGGTGTAGGGTAATACTAACAGTAC 60.202 44.444 0.00 0.00 43.33 2.73
1886 2247 3.312736 AGTTGATTCAACACCACCCTT 57.687 42.857 26.73 5.29 45.66 3.95
1896 2257 5.012046 TGCCTCTGACTTCTAGTTGATTCAA 59.988 40.000 0.00 0.00 0.00 2.69
1900 2261 4.093011 AGTGCCTCTGACTTCTAGTTGAT 58.907 43.478 0.00 0.00 0.00 2.57
1943 2304 3.436704 ACATGATAGGAAAATATGCGGCG 59.563 43.478 0.51 0.51 0.00 6.46
1997 2358 6.299141 TGAGCATTATTACCCTGATTTCTCC 58.701 40.000 0.00 0.00 0.00 3.71
2000 2361 7.516198 ACATGAGCATTATTACCCTGATTTC 57.484 36.000 0.00 0.00 0.00 2.17
2038 2399 8.859090 TCCATTCATGTTTGAAGTTTCTTGTAT 58.141 29.630 0.00 0.00 44.75 2.29
2039 2400 8.231692 TCCATTCATGTTTGAAGTTTCTTGTA 57.768 30.769 0.00 0.00 44.75 2.41
2042 2403 8.477256 TCTTTCCATTCATGTTTGAAGTTTCTT 58.523 29.630 0.00 0.00 44.75 2.52
2056 2417 7.015584 ACTGCTTTAAAGGTTCTTTCCATTCAT 59.984 33.333 16.78 0.00 0.00 2.57
2082 2445 4.577693 GCAGCATAATTTCTCTGTCATCCA 59.422 41.667 0.00 0.00 0.00 3.41
2138 2506 2.126057 TGGACCATATGCCATGACTCA 58.874 47.619 0.00 0.00 0.00 3.41
2168 2536 8.948631 TCAGATAATTAAGATGAACACACTCC 57.051 34.615 0.00 0.00 0.00 3.85
2258 2670 0.538584 TGCATTGCAACACCCAACAA 59.461 45.000 9.33 0.00 34.76 2.83
2433 2872 6.414079 CAGGTTCGATTCGATGTAAAGATTG 58.586 40.000 9.96 0.00 35.23 2.67
2478 2917 3.055675 CGGTTGGGTACATGACTAGGAAA 60.056 47.826 0.00 0.00 0.00 3.13
2634 3073 3.181497 CCTGCCATTGTAGATTCAAACGG 60.181 47.826 0.00 0.00 0.00 4.44
2636 3075 3.193267 TGCCTGCCATTGTAGATTCAAAC 59.807 43.478 0.00 0.00 0.00 2.93
2644 3086 2.158856 TCTCTGATGCCTGCCATTGTAG 60.159 50.000 0.00 0.00 33.29 2.74
2709 3160 5.862845 ACCAGGATTGATGCATAGAAGTAG 58.137 41.667 0.00 0.00 0.00 2.57
2770 3221 3.758755 TTGAGGCATGAATCGATAGCT 57.241 42.857 0.00 0.00 0.00 3.32
2942 3411 6.778834 ATGAGAAACACAATGATATGCCAA 57.221 33.333 0.00 0.00 0.00 4.52
2985 3457 3.009723 CTGGTGCCGAACAAGAACATAT 58.990 45.455 0.00 0.00 30.30 1.78
3077 3561 7.329962 TGGTCATTACTGTTTAGACGTTGTATG 59.670 37.037 0.00 0.00 0.00 2.39
3111 3595 4.076394 TCAGCAAGGTTTACGGCTAAAAT 58.924 39.130 0.00 0.00 34.06 1.82
3116 3601 1.812571 CATTCAGCAAGGTTTACGGCT 59.187 47.619 0.00 0.00 35.44 5.52
3173 3662 9.120538 GTATTCCTTCAGCACCTCAAAAATATA 57.879 33.333 0.00 0.00 0.00 0.86
3189 3678 7.990886 GGAGTATATGTTTGTGGTATTCCTTCA 59.009 37.037 0.00 0.00 34.23 3.02
3217 3706 6.990341 AAAAGGCTTATATTTACGAACGGT 57.010 33.333 0.00 0.00 0.00 4.83
3258 3747 7.496529 TCACTTATTTTGCTCCATATGTAGC 57.503 36.000 13.05 13.05 39.25 3.58
3266 3755 9.547753 GAGTATAGATTCACTTATTTTGCTCCA 57.452 33.333 0.00 0.00 0.00 3.86
3267 3756 9.771534 AGAGTATAGATTCACTTATTTTGCTCC 57.228 33.333 0.00 0.00 0.00 4.70
3310 3799 8.533657 ACCTTTCAGAAATTTCAATATGCATCA 58.466 29.630 19.99 0.00 0.00 3.07
3311 3800 8.937634 ACCTTTCAGAAATTTCAATATGCATC 57.062 30.769 19.99 0.00 0.00 3.91
3312 3801 8.755977 AGACCTTTCAGAAATTTCAATATGCAT 58.244 29.630 19.99 3.79 0.00 3.96
3313 3802 8.125978 AGACCTTTCAGAAATTTCAATATGCA 57.874 30.769 19.99 0.00 0.00 3.96
3314 3803 8.866956 CAAGACCTTTCAGAAATTTCAATATGC 58.133 33.333 19.99 3.04 0.00 3.14
3315 3804 9.918630 ACAAGACCTTTCAGAAATTTCAATATG 57.081 29.630 19.99 9.53 0.00 1.78
3326 3815 8.770828 CGTTTCTAAATACAAGACCTTTCAGAA 58.229 33.333 0.00 0.00 0.00 3.02
3327 3816 7.386848 CCGTTTCTAAATACAAGACCTTTCAGA 59.613 37.037 0.00 0.00 0.00 3.27
3328 3817 7.386848 TCCGTTTCTAAATACAAGACCTTTCAG 59.613 37.037 0.00 0.00 0.00 3.02
3329 3818 7.218614 TCCGTTTCTAAATACAAGACCTTTCA 58.781 34.615 0.00 0.00 0.00 2.69
3330 3819 7.148457 CCTCCGTTTCTAAATACAAGACCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
3331 3820 6.653740 CCTCCGTTTCTAAATACAAGACCTTT 59.346 38.462 0.00 0.00 0.00 3.11
3332 3821 6.171213 CCTCCGTTTCTAAATACAAGACCTT 58.829 40.000 0.00 0.00 0.00 3.50
3333 3822 5.338137 CCCTCCGTTTCTAAATACAAGACCT 60.338 44.000 0.00 0.00 0.00 3.85
3334 3823 4.874396 CCCTCCGTTTCTAAATACAAGACC 59.126 45.833 0.00 0.00 0.00 3.85
3335 3824 5.727434 TCCCTCCGTTTCTAAATACAAGAC 58.273 41.667 0.00 0.00 0.00 3.01
3336 3825 5.482878 ACTCCCTCCGTTTCTAAATACAAGA 59.517 40.000 0.00 0.00 0.00 3.02
3337 3826 5.731591 ACTCCCTCCGTTTCTAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
3338 3827 5.750352 ACTCCCTCCGTTTCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
3341 3830 8.773033 ATTACTACTCCCTCCGTTTCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
3347 3836 6.462552 AGTAATTACTACTCCCTCCGTTTC 57.537 41.667 16.60 0.00 35.90 2.78
3391 3880 7.984391 TGCAATTCTATCAATGTGTTCGTAAT 58.016 30.769 0.00 0.00 0.00 1.89
3457 3950 9.254133 CAGTTGTCTGTACAATATAGGATCTTG 57.746 37.037 0.00 0.00 46.84 3.02
3474 4020 1.002868 CCCCAGAGCCAGTTGTCTG 60.003 63.158 0.00 0.00 40.03 3.51
3537 4106 6.100859 ACCACATGAGATCCAAGATCATAAGT 59.899 38.462 0.00 0.00 32.51 2.24
3562 4132 2.425592 CGACACAGGCCAGGTGAA 59.574 61.111 28.08 0.00 39.53 3.18
3563 4133 3.625897 CCGACACAGGCCAGGTGA 61.626 66.667 28.08 0.00 39.53 4.02
3573 4143 1.804151 GCAGTCTATTTTGCCGACACA 59.196 47.619 0.00 0.00 34.28 3.72
3701 4271 1.585521 GTGTACGAGGCCGACATCG 60.586 63.158 3.76 3.76 44.36 3.84
3725 4295 0.462581 GCATAGCTACACCTGCAGCA 60.463 55.000 8.66 0.00 40.36 4.41
3773 4364 0.029567 CACTACCTCGCAGATCGTCC 59.970 60.000 0.00 0.00 39.67 4.79
3848 4439 3.482436 AGAACATAACAAAGGCCGTTCA 58.518 40.909 15.35 0.14 36.16 3.18
3849 4440 3.119955 GGAGAACATAACAAAGGCCGTTC 60.120 47.826 0.00 4.34 34.38 3.95
3850 4441 2.817844 GGAGAACATAACAAAGGCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
3851 4442 2.433436 GGAGAACATAACAAAGGCCGT 58.567 47.619 0.00 0.00 0.00 5.68
3852 4443 1.396996 CGGAGAACATAACAAAGGCCG 59.603 52.381 0.00 0.00 0.00 6.13
3853 4444 2.433436 ACGGAGAACATAACAAAGGCC 58.567 47.619 0.00 0.00 0.00 5.19
3854 4445 4.499037 AAACGGAGAACATAACAAAGGC 57.501 40.909 0.00 0.00 0.00 4.35
3855 4446 9.158233 TCTAATAAACGGAGAACATAACAAAGG 57.842 33.333 0.00 0.00 0.00 3.11
3857 4448 9.715121 ACTCTAATAAACGGAGAACATAACAAA 57.285 29.630 0.00 0.00 0.00 2.83
3858 4449 9.362539 GACTCTAATAAACGGAGAACATAACAA 57.637 33.333 0.00 0.00 0.00 2.83
3859 4450 8.746530 AGACTCTAATAAACGGAGAACATAACA 58.253 33.333 0.00 0.00 0.00 2.41
3860 4451 9.235537 GAGACTCTAATAAACGGAGAACATAAC 57.764 37.037 0.00 0.00 0.00 1.89
3861 4452 8.963725 TGAGACTCTAATAAACGGAGAACATAA 58.036 33.333 3.68 0.00 0.00 1.90
3862 4453 8.404000 GTGAGACTCTAATAAACGGAGAACATA 58.596 37.037 3.68 0.00 0.00 2.29
3863 4454 7.259161 GTGAGACTCTAATAAACGGAGAACAT 58.741 38.462 3.68 0.00 0.00 2.71
3864 4455 6.349944 GGTGAGACTCTAATAAACGGAGAACA 60.350 42.308 3.68 0.00 0.00 3.18
3865 4456 6.035217 GGTGAGACTCTAATAAACGGAGAAC 58.965 44.000 3.68 0.00 0.00 3.01
3866 4457 5.713389 TGGTGAGACTCTAATAAACGGAGAA 59.287 40.000 3.68 0.00 0.00 2.87
3867 4458 5.258841 TGGTGAGACTCTAATAAACGGAGA 58.741 41.667 3.68 0.00 0.00 3.71
3868 4459 5.578005 TGGTGAGACTCTAATAAACGGAG 57.422 43.478 3.68 0.00 0.00 4.63
3869 4460 5.892119 AGATGGTGAGACTCTAATAAACGGA 59.108 40.000 3.68 0.00 0.00 4.69
3870 4461 6.150396 AGATGGTGAGACTCTAATAAACGG 57.850 41.667 3.68 0.00 0.00 4.44
3871 4462 6.019479 GCAAGATGGTGAGACTCTAATAAACG 60.019 42.308 3.68 0.00 0.00 3.60
3872 4463 7.044798 AGCAAGATGGTGAGACTCTAATAAAC 58.955 38.462 3.68 0.00 0.00 2.01
3873 4464 7.093333 TGAGCAAGATGGTGAGACTCTAATAAA 60.093 37.037 3.68 0.00 0.00 1.40
3874 4465 6.381133 TGAGCAAGATGGTGAGACTCTAATAA 59.619 38.462 3.68 0.00 0.00 1.40
3875 4466 5.893824 TGAGCAAGATGGTGAGACTCTAATA 59.106 40.000 3.68 0.00 0.00 0.98
3876 4467 4.713814 TGAGCAAGATGGTGAGACTCTAAT 59.286 41.667 3.68 0.00 0.00 1.73
3877 4468 4.081972 GTGAGCAAGATGGTGAGACTCTAA 60.082 45.833 3.68 0.00 0.00 2.10
3878 4469 3.445450 GTGAGCAAGATGGTGAGACTCTA 59.555 47.826 3.68 0.00 0.00 2.43
3879 4470 2.233431 GTGAGCAAGATGGTGAGACTCT 59.767 50.000 3.68 0.00 0.00 3.24
3880 4471 2.233431 AGTGAGCAAGATGGTGAGACTC 59.767 50.000 0.00 0.00 0.00 3.36
3881 4472 2.233431 GAGTGAGCAAGATGGTGAGACT 59.767 50.000 0.00 0.00 0.00 3.24
3882 4473 2.233431 AGAGTGAGCAAGATGGTGAGAC 59.767 50.000 0.00 0.00 0.00 3.36
3883 4474 2.533916 AGAGTGAGCAAGATGGTGAGA 58.466 47.619 0.00 0.00 0.00 3.27
3884 4475 3.331478 AAGAGTGAGCAAGATGGTGAG 57.669 47.619 0.00 0.00 0.00 3.51
3885 4476 4.141846 GGATAAGAGTGAGCAAGATGGTGA 60.142 45.833 0.00 0.00 0.00 4.02
3886 4477 4.125703 GGATAAGAGTGAGCAAGATGGTG 58.874 47.826 0.00 0.00 0.00 4.17
3887 4478 4.036518 AGGATAAGAGTGAGCAAGATGGT 58.963 43.478 0.00 0.00 0.00 3.55
3888 4479 4.686191 AGGATAAGAGTGAGCAAGATGG 57.314 45.455 0.00 0.00 0.00 3.51
3889 4480 4.815308 CCAAGGATAAGAGTGAGCAAGATG 59.185 45.833 0.00 0.00 0.00 2.90
3890 4481 4.685575 GCCAAGGATAAGAGTGAGCAAGAT 60.686 45.833 0.00 0.00 0.00 2.40
3891 4482 3.369892 GCCAAGGATAAGAGTGAGCAAGA 60.370 47.826 0.00 0.00 0.00 3.02
3892 4483 2.941720 GCCAAGGATAAGAGTGAGCAAG 59.058 50.000 0.00 0.00 0.00 4.01
3893 4484 2.305635 TGCCAAGGATAAGAGTGAGCAA 59.694 45.455 0.00 0.00 0.00 3.91
3894 4485 1.908619 TGCCAAGGATAAGAGTGAGCA 59.091 47.619 0.00 0.00 0.00 4.26
3895 4486 2.698855 TGCCAAGGATAAGAGTGAGC 57.301 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.