Multiple sequence alignment - TraesCS3A01G531700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G531700 chr3A 100.000 2680 0 0 1 2680 744393677 744390998 0.000000e+00 4950.0
1 TraesCS3A01G531700 chr3D 90.765 1072 54 21 872 1912 610207961 610206904 0.000000e+00 1389.0
2 TraesCS3A01G531700 chr3D 92.126 635 37 8 2051 2678 610206583 610205955 0.000000e+00 883.0
3 TraesCS3A01G531700 chr3D 80.094 427 52 19 437 845 234810645 234811056 1.210000e-73 287.0
4 TraesCS3A01G531700 chr3B 90.756 1071 50 24 884 1912 822115390 822114327 0.000000e+00 1384.0
5 TraesCS3A01G531700 chr3B 86.787 666 48 17 2051 2680 822114050 822113389 0.000000e+00 706.0
6 TraesCS3A01G531700 chr3B 93.647 425 23 4 438 859 248247682 248248105 1.350000e-177 632.0
7 TraesCS3A01G531700 chr3B 85.846 325 32 4 110 432 822115703 822115391 1.540000e-87 333.0
8 TraesCS3A01G531700 chr3B 96.739 92 2 1 1963 2053 822114222 822114131 4.620000e-33 152.0
9 TraesCS3A01G531700 chr1B 85.564 762 59 19 1963 2680 475148145 475147391 0.000000e+00 750.0
10 TraesCS3A01G531700 chr1B 84.397 141 8 4 2552 2678 8166599 8166739 2.800000e-25 126.0
11 TraesCS3A01G531700 chr2B 94.601 426 20 3 437 859 614113525 614113950 0.000000e+00 656.0
12 TraesCS3A01G531700 chr1A 87.086 604 48 12 2091 2678 6550965 6550376 0.000000e+00 656.0
13 TraesCS3A01G531700 chr1A 93.911 427 20 4 437 859 561115537 561115113 8.090000e-180 640.0
14 TraesCS3A01G531700 chr1A 86.416 611 46 18 2091 2678 6537398 6536802 3.760000e-178 634.0
15 TraesCS3A01G531700 chr1A 83.525 261 20 7 995 1243 6566231 6566480 3.470000e-54 222.0
16 TraesCS3A01G531700 chr1A 88.554 166 14 1 2117 2277 6566928 6567093 2.100000e-46 196.0
17 TraesCS3A01G531700 chr5B 83.780 746 61 22 1962 2678 55501753 55502467 0.000000e+00 652.0
18 TraesCS3A01G531700 chr5B 83.178 428 42 14 438 845 61558977 61558560 5.450000e-97 364.0
19 TraesCS3A01G531700 chr5B 85.294 340 38 6 1349 1681 55501398 55501732 9.190000e-90 340.0
20 TraesCS3A01G531700 chr5B 91.667 144 11 1 703 845 38863368 38863225 5.850000e-47 198.0
21 TraesCS3A01G531700 chr6A 94.131 426 23 2 436 859 324283473 324283898 0.000000e+00 647.0
22 TraesCS3A01G531700 chr7A 93.632 424 25 2 437 859 399518216 399518638 1.350000e-177 632.0
23 TraesCS3A01G531700 chr7A 93.381 423 26 2 438 859 425083824 425084245 2.270000e-175 625.0
24 TraesCS3A01G531700 chr5A 93.271 431 26 3 432 859 490870076 490870506 1.350000e-177 632.0
25 TraesCS3A01G531700 chr5A 93.632 424 25 2 437 859 702252425 702252003 1.350000e-177 632.0
26 TraesCS3A01G531700 chr5A 79.406 471 57 17 438 877 148052617 148052156 2.020000e-76 296.0
27 TraesCS3A01G531700 chr1D 93.176 425 29 0 438 862 304333239 304332815 2.270000e-175 625.0
28 TraesCS3A01G531700 chr1D 90.493 284 21 5 2112 2393 5397740 5398019 1.170000e-98 370.0
29 TraesCS3A01G531700 chr1D 86.429 140 6 3 2552 2678 5398088 5398227 1.000000e-29 141.0
30 TraesCS3A01G531700 chr1D 79.545 176 10 11 1659 1824 5397511 5397670 4.720000e-18 102.0
31 TraesCS3A01G531700 chr6B 85.526 304 26 7 558 846 16319984 16319684 4.340000e-78 302.0
32 TraesCS3A01G531700 chr7D 85.065 154 13 6 2119 2262 251445 251598 5.980000e-32 148.0
33 TraesCS3A01G531700 chr2D 96.970 33 1 0 844 876 308982083 308982115 3.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G531700 chr3A 744390998 744393677 2679 True 4950.000000 4950 100.0000 1 2680 1 chr3A.!!$R1 2679
1 TraesCS3A01G531700 chr3D 610205955 610207961 2006 True 1136.000000 1389 91.4455 872 2678 2 chr3D.!!$R1 1806
2 TraesCS3A01G531700 chr3B 822113389 822115703 2314 True 643.750000 1384 90.0320 110 2680 4 chr3B.!!$R1 2570
3 TraesCS3A01G531700 chr1B 475147391 475148145 754 True 750.000000 750 85.5640 1963 2680 1 chr1B.!!$R1 717
4 TraesCS3A01G531700 chr1A 6550376 6550965 589 True 656.000000 656 87.0860 2091 2678 1 chr1A.!!$R2 587
5 TraesCS3A01G531700 chr1A 6536802 6537398 596 True 634.000000 634 86.4160 2091 2678 1 chr1A.!!$R1 587
6 TraesCS3A01G531700 chr1A 6566231 6567093 862 False 209.000000 222 86.0395 995 2277 2 chr1A.!!$F1 1282
7 TraesCS3A01G531700 chr5B 55501398 55502467 1069 False 496.000000 652 84.5370 1349 2678 2 chr5B.!!$F1 1329
8 TraesCS3A01G531700 chr1D 5397511 5398227 716 False 204.333333 370 85.4890 1659 2678 3 chr1D.!!$F1 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 714 0.104855 CAGATGGGCTAGCGTGCTAA 59.895 55.0 9.0 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1975 0.464735 ACAACGCCCAAGTTAGCACA 60.465 50.0 0.0 0.0 32.35 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.894376 CCATCAATGCTAACTTCAACAAATT 57.106 32.000 0.00 0.00 0.00 1.82
25 26 7.956558 CCATCAATGCTAACTTCAACAAATTC 58.043 34.615 0.00 0.00 0.00 2.17
26 27 7.816031 CCATCAATGCTAACTTCAACAAATTCT 59.184 33.333 0.00 0.00 0.00 2.40
27 28 9.199982 CATCAATGCTAACTTCAACAAATTCTT 57.800 29.630 0.00 0.00 0.00 2.52
28 29 9.768662 ATCAATGCTAACTTCAACAAATTCTTT 57.231 25.926 0.00 0.00 0.00 2.52
29 30 9.033481 TCAATGCTAACTTCAACAAATTCTTTG 57.967 29.630 0.00 0.00 45.95 2.77
59 60 7.754851 AAAGTCATACAAATTTACTTCGGGT 57.245 32.000 4.24 0.00 30.37 5.28
60 61 8.851541 AAAGTCATACAAATTTACTTCGGGTA 57.148 30.769 4.24 0.00 30.37 3.69
61 62 8.851541 AAGTCATACAAATTTACTTCGGGTAA 57.148 30.769 0.00 0.00 38.48 2.85
71 72 6.439675 TTTACTTCGGGTAAATAACATGGC 57.560 37.500 0.00 0.00 43.10 4.40
72 73 3.958018 ACTTCGGGTAAATAACATGGCA 58.042 40.909 0.00 0.00 0.00 4.92
73 74 4.337145 ACTTCGGGTAAATAACATGGCAA 58.663 39.130 0.00 0.00 0.00 4.52
74 75 4.953579 ACTTCGGGTAAATAACATGGCAAT 59.046 37.500 0.00 0.00 0.00 3.56
75 76 6.123651 ACTTCGGGTAAATAACATGGCAATA 58.876 36.000 0.00 0.00 0.00 1.90
76 77 6.775629 ACTTCGGGTAAATAACATGGCAATAT 59.224 34.615 0.00 0.00 0.00 1.28
77 78 7.940137 ACTTCGGGTAAATAACATGGCAATATA 59.060 33.333 0.00 0.00 0.00 0.86
78 79 8.871629 TTCGGGTAAATAACATGGCAATATAT 57.128 30.769 0.00 0.00 0.00 0.86
79 80 8.275015 TCGGGTAAATAACATGGCAATATATG 57.725 34.615 0.00 0.00 0.00 1.78
80 81 7.885922 TCGGGTAAATAACATGGCAATATATGT 59.114 33.333 0.00 0.00 39.08 2.29
81 82 9.168451 CGGGTAAATAACATGGCAATATATGTA 57.832 33.333 0.00 0.00 36.56 2.29
90 91 9.532494 AACATGGCAATATATGTACATAATGGT 57.468 29.630 19.11 11.92 36.56 3.55
93 94 8.731275 TGGCAATATATGTACATAATGGTAGC 57.269 34.615 19.11 16.38 0.00 3.58
94 95 7.494298 TGGCAATATATGTACATAATGGTAGCG 59.506 37.037 19.11 4.55 0.00 4.26
95 96 7.494625 GGCAATATATGTACATAATGGTAGCGT 59.505 37.037 19.11 2.72 0.00 5.07
96 97 9.524106 GCAATATATGTACATAATGGTAGCGTA 57.476 33.333 19.11 4.82 0.00 4.42
102 103 8.896320 ATGTACATAATGGTAGCGTATTTCAA 57.104 30.769 6.56 0.00 0.00 2.69
103 104 8.719560 TGTACATAATGGTAGCGTATTTCAAA 57.280 30.769 0.00 0.00 0.00 2.69
104 105 8.822855 TGTACATAATGGTAGCGTATTTCAAAG 58.177 33.333 0.00 0.00 0.00 2.77
105 106 7.859325 ACATAATGGTAGCGTATTTCAAAGT 57.141 32.000 0.00 0.00 0.00 2.66
106 107 8.951787 ACATAATGGTAGCGTATTTCAAAGTA 57.048 30.769 0.00 0.00 0.00 2.24
107 108 9.386010 ACATAATGGTAGCGTATTTCAAAGTAA 57.614 29.630 0.00 0.00 0.00 2.24
114 115 9.048446 GGTAGCGTATTTCAAAGTAATAATCCA 57.952 33.333 0.00 0.00 0.00 3.41
119 120 9.931210 CGTATTTCAAAGTAATAATCCAGTTCC 57.069 33.333 0.00 0.00 0.00 3.62
122 123 7.391148 TTCAAAGTAATAATCCAGTTCCAGC 57.609 36.000 0.00 0.00 0.00 4.85
126 127 7.631717 AAGTAATAATCCAGTTCCAGCTTTC 57.368 36.000 0.00 0.00 0.00 2.62
129 130 2.206576 ATCCAGTTCCAGCTTTCCAC 57.793 50.000 0.00 0.00 0.00 4.02
137 138 1.202371 TCCAGCTTTCCACGCGTATAG 60.202 52.381 13.44 8.08 0.00 1.31
140 141 3.552273 CCAGCTTTCCACGCGTATAGTAT 60.552 47.826 13.44 0.00 0.00 2.12
153 154 7.007188 CACGCGTATAGTATGATTACTAGCAAC 59.993 40.741 13.44 0.00 42.66 4.17
309 311 9.118300 TCAAATTTGATGCAATTACCAAAAAGT 57.882 25.926 16.91 0.00 33.05 2.66
310 312 9.384682 CAAATTTGATGCAATTACCAAAAAGTC 57.615 29.630 13.08 0.00 33.05 3.01
312 314 4.804108 TGATGCAATTACCAAAAAGTCGG 58.196 39.130 0.00 0.00 0.00 4.79
313 315 3.651803 TGCAATTACCAAAAAGTCGGG 57.348 42.857 0.00 0.00 0.00 5.14
314 316 2.297597 TGCAATTACCAAAAAGTCGGGG 59.702 45.455 0.00 0.00 0.00 5.73
315 317 2.353307 GCAATTACCAAAAAGTCGGGGG 60.353 50.000 0.00 0.00 0.00 5.40
316 318 3.158676 CAATTACCAAAAAGTCGGGGGA 58.841 45.455 0.00 0.00 0.00 4.81
317 319 2.572209 TTACCAAAAAGTCGGGGGAG 57.428 50.000 0.00 0.00 0.00 4.30
318 320 0.694196 TACCAAAAAGTCGGGGGAGG 59.306 55.000 0.00 0.00 0.00 4.30
319 321 1.977009 CCAAAAAGTCGGGGGAGGC 60.977 63.158 0.00 0.00 0.00 4.70
320 322 1.228429 CAAAAAGTCGGGGGAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
321 323 0.825840 CAAAAAGTCGGGGGAGGCAA 60.826 55.000 0.00 0.00 0.00 4.52
322 324 0.105913 AAAAAGTCGGGGGAGGCAAA 60.106 50.000 0.00 0.00 0.00 3.68
323 325 0.114364 AAAAGTCGGGGGAGGCAAAT 59.886 50.000 0.00 0.00 0.00 2.32
340 342 1.821216 AATTTTCACGCTGGTCGGAT 58.179 45.000 0.00 0.00 43.86 4.18
345 347 0.320374 TCACGCTGGTCGGATCTTTT 59.680 50.000 0.00 0.00 43.86 2.27
346 348 1.156736 CACGCTGGTCGGATCTTTTT 58.843 50.000 0.00 0.00 43.86 1.94
378 380 0.546598 AAGTCCAGGGGCTTTATCGG 59.453 55.000 0.00 0.00 0.00 4.18
421 424 3.525800 ACACAAGAAAATAGGGCTGGT 57.474 42.857 0.00 0.00 0.00 4.00
432 435 0.842635 AGGGCTGGTCCATCTTCATC 59.157 55.000 0.00 0.00 36.21 2.92
433 436 0.842635 GGGCTGGTCCATCTTCATCT 59.157 55.000 0.00 0.00 36.21 2.90
434 437 1.476471 GGGCTGGTCCATCTTCATCTG 60.476 57.143 0.00 0.00 36.21 2.90
435 438 1.487976 GGCTGGTCCATCTTCATCTGA 59.512 52.381 0.00 0.00 34.01 3.27
436 439 2.559440 GCTGGTCCATCTTCATCTGAC 58.441 52.381 0.00 0.00 0.00 3.51
437 440 2.170187 GCTGGTCCATCTTCATCTGACT 59.830 50.000 0.00 0.00 0.00 3.41
438 441 3.386078 GCTGGTCCATCTTCATCTGACTA 59.614 47.826 0.00 0.00 0.00 2.59
439 442 4.040217 GCTGGTCCATCTTCATCTGACTAT 59.960 45.833 0.00 0.00 0.00 2.12
440 443 5.244851 GCTGGTCCATCTTCATCTGACTATA 59.755 44.000 0.00 0.00 0.00 1.31
441 444 6.572119 GCTGGTCCATCTTCATCTGACTATAG 60.572 46.154 0.00 0.00 0.00 1.31
442 445 5.244851 TGGTCCATCTTCATCTGACTATAGC 59.755 44.000 0.00 0.00 0.00 2.97
443 446 5.480073 GGTCCATCTTCATCTGACTATAGCT 59.520 44.000 0.00 0.00 0.00 3.32
444 447 6.389091 GTCCATCTTCATCTGACTATAGCTG 58.611 44.000 0.00 0.00 0.00 4.24
445 448 5.479724 TCCATCTTCATCTGACTATAGCTGG 59.520 44.000 0.00 0.00 0.00 4.85
446 449 4.862902 TCTTCATCTGACTATAGCTGGC 57.137 45.455 0.00 0.00 0.00 4.85
447 450 3.576118 TCTTCATCTGACTATAGCTGGCC 59.424 47.826 0.00 0.00 0.00 5.36
448 451 2.962859 TCATCTGACTATAGCTGGCCA 58.037 47.619 4.71 4.71 0.00 5.36
449 452 3.308401 TCATCTGACTATAGCTGGCCAA 58.692 45.455 7.01 0.00 0.00 4.52
450 453 3.711190 TCATCTGACTATAGCTGGCCAAA 59.289 43.478 7.01 0.00 0.00 3.28
451 454 3.543680 TCTGACTATAGCTGGCCAAAC 57.456 47.619 7.01 1.16 0.00 2.93
452 455 2.159099 TCTGACTATAGCTGGCCAAACG 60.159 50.000 7.01 0.00 0.00 3.60
453 456 1.134521 TGACTATAGCTGGCCAAACGG 60.135 52.381 7.01 0.00 0.00 4.44
454 457 0.180406 ACTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
463 466 2.670251 CCAAACGGGCCGTGCTAA 60.670 61.111 34.87 0.00 39.99 3.09
464 467 2.559330 CAAACGGGCCGTGCTAAC 59.441 61.111 34.87 0.00 39.99 2.34
465 468 1.964373 CAAACGGGCCGTGCTAACT 60.964 57.895 34.87 13.44 39.99 2.24
466 469 1.964373 AAACGGGCCGTGCTAACTG 60.964 57.895 34.87 0.00 39.99 3.16
467 470 3.894547 AACGGGCCGTGCTAACTGG 62.895 63.158 34.87 0.00 39.99 4.00
472 475 4.077184 CCGTGCTAACTGGGCCGA 62.077 66.667 0.00 0.00 0.00 5.54
473 476 2.813908 CGTGCTAACTGGGCCGAC 60.814 66.667 0.00 0.00 0.00 4.79
474 477 2.436115 GTGCTAACTGGGCCGACC 60.436 66.667 0.00 0.00 40.81 4.79
484 487 4.814294 GGCCGACCCAGTAGCACG 62.814 72.222 0.00 0.00 0.00 5.34
486 489 4.063967 CCGACCCAGTAGCACGCA 62.064 66.667 0.00 0.00 0.00 5.24
487 490 2.507102 CGACCCAGTAGCACGCAG 60.507 66.667 0.00 0.00 0.00 5.18
488 491 2.125512 GACCCAGTAGCACGCAGG 60.126 66.667 0.00 0.00 0.00 4.85
489 492 2.603473 ACCCAGTAGCACGCAGGA 60.603 61.111 0.00 0.00 0.00 3.86
490 493 2.167398 GACCCAGTAGCACGCAGGAA 62.167 60.000 0.00 0.00 0.00 3.36
491 494 1.741770 CCCAGTAGCACGCAGGAAC 60.742 63.158 0.00 0.00 0.00 3.62
492 495 2.094659 CCAGTAGCACGCAGGAACG 61.095 63.158 0.00 0.00 39.50 3.95
493 496 1.080772 CAGTAGCACGCAGGAACGA 60.081 57.895 0.00 0.00 36.70 3.85
494 497 1.080705 AGTAGCACGCAGGAACGAC 60.081 57.895 0.00 0.00 36.70 4.34
495 498 1.372499 GTAGCACGCAGGAACGACA 60.372 57.895 0.00 0.00 36.70 4.35
496 499 0.736325 GTAGCACGCAGGAACGACAT 60.736 55.000 0.00 0.00 36.70 3.06
497 500 0.735978 TAGCACGCAGGAACGACATG 60.736 55.000 0.00 0.00 36.70 3.21
498 501 3.027170 GCACGCAGGAACGACATGG 62.027 63.158 0.00 0.00 36.70 3.66
499 502 2.742372 ACGCAGGAACGACATGGC 60.742 61.111 0.00 0.00 36.70 4.40
500 503 3.499737 CGCAGGAACGACATGGCC 61.500 66.667 0.00 0.00 34.06 5.36
501 504 3.134127 GCAGGAACGACATGGCCC 61.134 66.667 0.00 0.00 0.00 5.80
502 505 2.350895 CAGGAACGACATGGCCCA 59.649 61.111 0.00 0.00 0.00 5.36
503 506 1.746615 CAGGAACGACATGGCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
504 507 2.438434 GGAACGACATGGCCCAGG 60.438 66.667 0.00 0.00 0.00 4.45
505 508 3.134127 GAACGACATGGCCCAGGC 61.134 66.667 0.00 0.00 41.06 4.85
506 509 3.918253 GAACGACATGGCCCAGGCA 62.918 63.158 11.50 0.00 44.11 4.75
507 510 4.722700 ACGACATGGCCCAGGCAC 62.723 66.667 11.50 0.50 41.84 5.01
525 528 2.263540 GGCACGACCCGAGCTAAA 59.736 61.111 8.46 0.00 42.50 1.85
526 529 2.098831 GGCACGACCCGAGCTAAAC 61.099 63.158 8.46 0.00 42.50 2.01
527 530 2.442188 GCACGACCCGAGCTAAACG 61.442 63.158 0.00 0.00 40.03 3.60
533 536 4.732106 CCGAGCTAAACGGGCTAG 57.268 61.111 4.45 0.00 45.65 3.42
534 537 1.067582 CCGAGCTAAACGGGCTAGG 59.932 63.158 4.45 0.00 45.65 3.02
535 538 1.591863 CGAGCTAAACGGGCTAGGC 60.592 63.158 8.00 8.00 40.40 3.93
576 579 4.517934 CATGCCTGGGCCTGGAGG 62.518 72.222 31.46 18.34 41.09 4.30
614 617 3.280211 GGCACGGCCCGTTTAATT 58.720 55.556 5.76 0.00 44.06 1.40
615 618 1.138036 GGCACGGCCCGTTTAATTC 59.862 57.895 5.76 0.00 44.06 2.17
616 619 1.310216 GGCACGGCCCGTTTAATTCT 61.310 55.000 5.76 0.00 44.06 2.40
617 620 0.524414 GCACGGCCCGTTTAATTCTT 59.476 50.000 5.76 0.00 38.32 2.52
618 621 1.068125 GCACGGCCCGTTTAATTCTTT 60.068 47.619 5.76 0.00 38.32 2.52
619 622 2.608506 GCACGGCCCGTTTAATTCTTTT 60.609 45.455 5.76 0.00 38.32 2.27
620 623 3.239254 CACGGCCCGTTTAATTCTTTTC 58.761 45.455 5.76 0.00 38.32 2.29
621 624 2.885894 ACGGCCCGTTTAATTCTTTTCA 59.114 40.909 1.02 0.00 36.35 2.69
622 625 3.057806 ACGGCCCGTTTAATTCTTTTCAG 60.058 43.478 1.02 0.00 36.35 3.02
623 626 3.189702 CGGCCCGTTTAATTCTTTTCAGA 59.810 43.478 0.00 0.00 0.00 3.27
624 627 4.142469 CGGCCCGTTTAATTCTTTTCAGAT 60.142 41.667 0.00 0.00 0.00 2.90
625 628 5.621329 CGGCCCGTTTAATTCTTTTCAGATT 60.621 40.000 0.00 0.00 0.00 2.40
626 629 6.163476 GGCCCGTTTAATTCTTTTCAGATTT 58.837 36.000 0.00 0.00 0.00 2.17
627 630 6.649141 GGCCCGTTTAATTCTTTTCAGATTTT 59.351 34.615 0.00 0.00 0.00 1.82
628 631 7.172532 GGCCCGTTTAATTCTTTTCAGATTTTT 59.827 33.333 0.00 0.00 0.00 1.94
683 686 3.826729 GGCCTAAAATACAGCCCAATAGG 59.173 47.826 0.00 0.00 39.60 2.57
698 701 6.336842 CCCAATAGGCTAAAAATCAGATGG 57.663 41.667 0.00 0.00 0.00 3.51
699 702 5.244626 CCCAATAGGCTAAAAATCAGATGGG 59.755 44.000 0.00 2.38 36.92 4.00
700 703 5.279156 CCAATAGGCTAAAAATCAGATGGGC 60.279 44.000 0.00 0.00 0.00 5.36
701 704 3.677156 AGGCTAAAAATCAGATGGGCT 57.323 42.857 0.00 0.00 0.00 5.19
702 705 4.796110 AGGCTAAAAATCAGATGGGCTA 57.204 40.909 0.00 0.00 0.00 3.93
703 706 4.723309 AGGCTAAAAATCAGATGGGCTAG 58.277 43.478 0.00 0.00 0.00 3.42
704 707 3.254411 GGCTAAAAATCAGATGGGCTAGC 59.746 47.826 6.04 6.04 0.00 3.42
705 708 3.058639 GCTAAAAATCAGATGGGCTAGCG 60.059 47.826 9.00 0.00 0.00 4.26
706 709 2.717639 AAAATCAGATGGGCTAGCGT 57.282 45.000 9.00 0.00 0.00 5.07
707 710 1.959042 AAATCAGATGGGCTAGCGTG 58.041 50.000 9.00 1.14 0.00 5.34
708 711 0.533755 AATCAGATGGGCTAGCGTGC 60.534 55.000 9.00 0.00 0.00 5.34
709 712 1.406065 ATCAGATGGGCTAGCGTGCT 61.406 55.000 9.00 0.00 0.00 4.40
710 713 0.755327 TCAGATGGGCTAGCGTGCTA 60.755 55.000 9.00 1.07 0.00 3.49
711 714 0.104855 CAGATGGGCTAGCGTGCTAA 59.895 55.000 9.00 0.00 0.00 3.09
712 715 0.830648 AGATGGGCTAGCGTGCTAAA 59.169 50.000 9.00 0.00 0.00 1.85
713 716 0.938008 GATGGGCTAGCGTGCTAAAC 59.062 55.000 9.00 0.00 0.00 2.01
737 740 2.439519 CGGGCCGGCCTGTTTAAT 60.440 61.111 41.29 0.00 37.68 1.40
738 741 1.153127 CGGGCCGGCCTGTTTAATA 60.153 57.895 41.29 0.00 37.68 0.98
739 742 1.164041 CGGGCCGGCCTGTTTAATAG 61.164 60.000 41.29 19.05 37.68 1.73
740 743 0.106868 GGGCCGGCCTGTTTAATAGT 60.107 55.000 42.70 0.00 36.10 2.12
741 744 1.306148 GGCCGGCCTGTTTAATAGTC 58.694 55.000 38.76 6.46 0.00 2.59
742 745 1.407712 GGCCGGCCTGTTTAATAGTCA 60.408 52.381 38.76 0.00 0.00 3.41
743 746 1.940613 GCCGGCCTGTTTAATAGTCAG 59.059 52.381 18.11 0.00 0.00 3.51
748 751 3.261981 CCTGTTTAATAGTCAGGCCGT 57.738 47.619 0.00 0.00 41.46 5.68
749 752 2.936498 CCTGTTTAATAGTCAGGCCGTG 59.064 50.000 0.00 0.00 41.46 4.94
750 753 2.351726 CTGTTTAATAGTCAGGCCGTGC 59.648 50.000 0.00 0.00 0.00 5.34
763 766 4.463879 CGTGCCTGGGCCAGAGAG 62.464 72.222 34.84 18.97 41.09 3.20
764 767 4.792804 GTGCCTGGGCCAGAGAGC 62.793 72.222 34.84 27.58 41.09 4.09
772 775 4.154347 GCCAGAGAGCCACTCCCG 62.154 72.222 5.12 0.00 45.96 5.14
773 776 2.681778 CCAGAGAGCCACTCCCGT 60.682 66.667 5.12 0.00 45.96 5.28
774 777 2.575993 CAGAGAGCCACTCCCGTG 59.424 66.667 5.12 0.00 45.96 4.94
810 813 3.536548 ACGGCTATTAAACGTGCCA 57.463 47.368 12.24 0.00 45.13 4.92
811 814 2.032680 ACGGCTATTAAACGTGCCAT 57.967 45.000 12.24 0.00 45.13 4.40
812 815 1.668751 ACGGCTATTAAACGTGCCATG 59.331 47.619 12.24 0.38 45.13 3.66
813 816 1.002900 CGGCTATTAAACGTGCCATGG 60.003 52.381 7.63 7.63 45.13 3.66
814 817 1.269051 GGCTATTAAACGTGCCATGGC 60.269 52.381 30.54 30.54 44.34 4.40
815 818 1.596954 GCTATTAAACGTGCCATGGCG 60.597 52.381 30.87 20.22 45.51 5.69
816 819 1.002900 CTATTAAACGTGCCATGGCGG 60.003 52.381 30.87 26.12 45.51 6.13
817 820 1.662438 ATTAAACGTGCCATGGCGGG 61.662 55.000 30.87 25.76 45.51 6.13
842 845 2.902343 GGGCCAGGCACGATTAGC 60.902 66.667 15.19 0.00 0.00 3.09
843 846 2.124736 GGCCAGGCACGATTAGCA 60.125 61.111 15.19 0.00 0.00 3.49
844 847 2.472909 GGCCAGGCACGATTAGCAC 61.473 63.158 15.19 0.00 0.00 4.40
845 848 2.813179 GCCAGGCACGATTAGCACG 61.813 63.158 6.55 0.00 0.00 5.34
846 849 1.447838 CCAGGCACGATTAGCACGT 60.448 57.895 0.00 0.00 44.83 4.49
874 877 2.672996 CCCGTTTGGCCAGGTCTG 60.673 66.667 5.11 0.00 0.00 3.51
948 952 0.988063 GGAAGGTTTGCTCCTCCTCT 59.012 55.000 0.00 0.00 36.74 3.69
965 973 0.107606 TCTTCCTCTCCGTCTCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
972 980 2.045242 CCGTCTCTCCGGTCTCCA 60.045 66.667 0.00 0.00 43.07 3.86
973 981 2.408241 CCGTCTCTCCGGTCTCCAC 61.408 68.421 0.00 0.00 43.07 4.02
974 982 2.751913 CGTCTCTCCGGTCTCCACG 61.752 68.421 0.00 1.09 0.00 4.94
975 983 2.750637 TCTCTCCGGTCTCCACGC 60.751 66.667 0.00 0.00 0.00 5.34
976 984 3.827898 CTCTCCGGTCTCCACGCC 61.828 72.222 0.00 0.00 0.00 5.68
977 985 4.671590 TCTCCGGTCTCCACGCCA 62.672 66.667 0.00 0.00 0.00 5.69
978 986 4.135153 CTCCGGTCTCCACGCCAG 62.135 72.222 0.00 0.00 0.00 4.85
1089 1138 2.191641 GCCATCTCTCAGGTGCCC 59.808 66.667 0.00 0.00 0.00 5.36
1183 1249 1.749638 TTGGTTTGTTCCACCGCGT 60.750 52.632 4.92 0.00 37.07 6.01
1184 1250 1.313812 TTGGTTTGTTCCACCGCGTT 61.314 50.000 4.92 0.00 37.07 4.84
1313 1379 3.785486 TCAGCTCACTATGTATGTGCAC 58.215 45.455 10.75 10.75 38.68 4.57
1315 1381 3.554731 CAGCTCACTATGTATGTGCACAG 59.445 47.826 25.84 12.66 38.68 3.66
1317 1383 4.100653 AGCTCACTATGTATGTGCACAGAT 59.899 41.667 25.84 17.88 38.68 2.90
1319 1385 5.985530 GCTCACTATGTATGTGCACAGATAA 59.014 40.000 25.84 13.56 36.73 1.75
1320 1386 6.074088 GCTCACTATGTATGTGCACAGATAAC 60.074 42.308 25.84 18.97 36.73 1.89
1335 1401 6.239176 GCACAGATAACTAACTAGCTGATCCT 60.239 42.308 0.00 0.00 37.47 3.24
1370 1442 2.221169 TGAATCGAATGTATGCCCTGC 58.779 47.619 0.00 0.00 0.00 4.85
1371 1443 1.537202 GAATCGAATGTATGCCCTGCC 59.463 52.381 0.00 0.00 0.00 4.85
1372 1444 0.767375 ATCGAATGTATGCCCTGCCT 59.233 50.000 0.00 0.00 0.00 4.75
1373 1445 0.546122 TCGAATGTATGCCCTGCCTT 59.454 50.000 0.00 0.00 0.00 4.35
1374 1446 0.664761 CGAATGTATGCCCTGCCTTG 59.335 55.000 0.00 0.00 0.00 3.61
1375 1447 0.386838 GAATGTATGCCCTGCCTTGC 59.613 55.000 0.00 0.00 0.00 4.01
1376 1448 0.032813 AATGTATGCCCTGCCTTGCT 60.033 50.000 0.00 0.00 0.00 3.91
1377 1449 0.754217 ATGTATGCCCTGCCTTGCTG 60.754 55.000 0.00 0.00 0.00 4.41
1378 1450 1.379044 GTATGCCCTGCCTTGCTGT 60.379 57.895 0.00 0.00 0.00 4.40
1379 1451 1.077501 TATGCCCTGCCTTGCTGTC 60.078 57.895 0.00 0.00 0.00 3.51
1553 1641 4.323417 TCATTTACAACGGCAAGACTCAT 58.677 39.130 0.00 0.00 0.00 2.90
1685 1779 7.287005 GGAAAGGGGAAGAAGAAGTAAGAAAAA 59.713 37.037 0.00 0.00 0.00 1.94
1843 1962 0.872388 GCGGCGGGTGGAAATAATAG 59.128 55.000 9.78 0.00 0.00 1.73
1912 2031 4.083003 CCGTTGCTTGTATTTAGCTTCCAA 60.083 41.667 0.00 0.00 39.38 3.53
1913 2032 5.393027 CCGTTGCTTGTATTTAGCTTCCAAT 60.393 40.000 0.00 0.00 39.38 3.16
1917 2036 7.553881 TGCTTGTATTTAGCTTCCAATCTAC 57.446 36.000 0.00 0.00 39.38 2.59
1918 2037 7.109501 TGCTTGTATTTAGCTTCCAATCTACA 58.890 34.615 0.00 0.00 39.38 2.74
1924 2043 9.736023 GTATTTAGCTTCCAATCTACATTTTGG 57.264 33.333 0.00 0.00 43.10 3.28
1934 2053 7.399765 TCCAATCTACATTTTGGAAATGGATGT 59.600 33.333 15.45 5.08 46.36 3.06
1935 2054 7.707893 CCAATCTACATTTTGGAAATGGATGTC 59.292 37.037 15.45 0.00 44.23 3.06
1936 2055 8.472413 CAATCTACATTTTGGAAATGGATGTCT 58.528 33.333 15.45 0.00 33.42 3.41
1937 2056 8.599624 ATCTACATTTTGGAAATGGATGTCTT 57.400 30.769 15.45 0.00 33.42 3.01
1938 2057 7.829725 TCTACATTTTGGAAATGGATGTCTTG 58.170 34.615 15.45 0.00 33.42 3.02
1939 2058 5.797051 ACATTTTGGAAATGGATGTCTTGG 58.203 37.500 15.45 0.00 32.14 3.61
1940 2059 5.307716 ACATTTTGGAAATGGATGTCTTGGT 59.692 36.000 15.45 0.00 32.14 3.67
1941 2060 6.496565 ACATTTTGGAAATGGATGTCTTGGTA 59.503 34.615 15.45 0.00 32.14 3.25
1944 2063 5.715439 TGGAAATGGATGTCTTGGTAGAT 57.285 39.130 0.00 0.00 31.86 1.98
1945 2064 6.078456 TGGAAATGGATGTCTTGGTAGATT 57.922 37.500 0.00 0.00 31.86 2.40
1946 2065 5.887598 TGGAAATGGATGTCTTGGTAGATTG 59.112 40.000 0.00 0.00 31.86 2.67
1947 2066 5.221126 GGAAATGGATGTCTTGGTAGATTGC 60.221 44.000 0.00 0.00 31.86 3.56
1949 2068 3.877559 TGGATGTCTTGGTAGATTGCAG 58.122 45.455 0.00 0.00 31.86 4.41
1950 2069 3.519107 TGGATGTCTTGGTAGATTGCAGA 59.481 43.478 0.00 0.00 31.86 4.26
1951 2070 4.164796 TGGATGTCTTGGTAGATTGCAGAT 59.835 41.667 0.00 0.00 31.86 2.90
1952 2071 5.128919 GGATGTCTTGGTAGATTGCAGATT 58.871 41.667 0.00 0.00 31.86 2.40
1955 2074 4.019411 TGTCTTGGTAGATTGCAGATTCCA 60.019 41.667 0.00 0.00 31.86 3.53
1957 2076 5.415701 GTCTTGGTAGATTGCAGATTCCAAA 59.584 40.000 11.44 3.87 33.95 3.28
1958 2077 5.415701 TCTTGGTAGATTGCAGATTCCAAAC 59.584 40.000 11.44 0.00 33.95 2.93
1960 2079 4.701651 TGGTAGATTGCAGATTCCAAACTG 59.298 41.667 0.00 0.00 37.22 3.16
2115 2478 2.489938 TGGTTGGGTACATCAGAAGC 57.510 50.000 0.00 0.00 0.00 3.86
2134 2498 5.298777 AGAAGCTATGGCAATCTGAATTCAC 59.701 40.000 3.38 0.00 41.70 3.18
2223 2597 6.599244 TCAACCTCTGGACATGATTGAATTAC 59.401 38.462 0.00 0.00 0.00 1.89
2328 2704 2.295349 AGGTGACGTGTCAAATCGTAGT 59.705 45.455 3.92 0.00 41.85 2.73
2331 2707 3.850273 GTGACGTGTCAAATCGTAGTAGG 59.150 47.826 3.92 0.00 41.85 3.18
2332 2708 3.752747 TGACGTGTCAAATCGTAGTAGGA 59.247 43.478 0.00 0.00 40.39 2.94
2337 2713 4.857588 GTGTCAAATCGTAGTAGGAGTGTG 59.142 45.833 0.00 0.00 0.00 3.82
2339 2715 5.094134 GTCAAATCGTAGTAGGAGTGTGTC 58.906 45.833 0.00 0.00 0.00 3.67
2343 2719 7.175467 TCAAATCGTAGTAGGAGTGTGTCTTTA 59.825 37.037 0.00 0.00 0.00 1.85
2441 2820 0.392327 TCATCTTCGCCGGCAAATCA 60.392 50.000 28.98 4.01 0.00 2.57
2451 2830 2.801063 CCGGCAAATCATTGTCACATC 58.199 47.619 0.00 0.00 41.31 3.06
2529 2914 6.755206 ACTTTTCTTATTGGTGGGTTAAAGC 58.245 36.000 0.00 0.00 0.00 3.51
2530 2915 6.553476 ACTTTTCTTATTGGTGGGTTAAAGCT 59.447 34.615 0.00 0.00 0.00 3.74
2531 2916 6.584185 TTTCTTATTGGTGGGTTAAAGCTC 57.416 37.500 0.00 0.00 0.00 4.09
2563 2966 3.064958 CCTGTGCAATTGAGCTACATCTG 59.935 47.826 10.34 0.00 34.99 2.90
2587 2990 8.445275 TGTTTGTAAACTCTGTGTGATATGTT 57.555 30.769 8.74 0.00 39.59 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.816031 AGAATTTGTTGAAGTTAGCATTGATGG 59.184 33.333 0.00 0.00 0.00 3.51
1 2 8.752766 AGAATTTGTTGAAGTTAGCATTGATG 57.247 30.769 0.00 0.00 0.00 3.07
2 3 9.768662 AAAGAATTTGTTGAAGTTAGCATTGAT 57.231 25.926 0.00 0.00 36.60 2.57
33 34 9.457436 ACCCGAAGTAAATTTGTATGACTTTAT 57.543 29.630 0.00 0.00 30.66 1.40
34 35 8.851541 ACCCGAAGTAAATTTGTATGACTTTA 57.148 30.769 0.00 0.00 30.66 1.85
35 36 7.754851 ACCCGAAGTAAATTTGTATGACTTT 57.245 32.000 0.00 0.00 30.66 2.66
36 37 8.851541 TTACCCGAAGTAAATTTGTATGACTT 57.148 30.769 0.00 1.87 38.01 3.01
37 38 8.851541 TTTACCCGAAGTAAATTTGTATGACT 57.148 30.769 0.00 0.00 44.25 3.41
49 50 5.498393 TGCCATGTTATTTACCCGAAGTAA 58.502 37.500 0.00 0.00 39.22 2.24
50 51 5.100344 TGCCATGTTATTTACCCGAAGTA 57.900 39.130 0.00 0.00 0.00 2.24
51 52 3.958018 TGCCATGTTATTTACCCGAAGT 58.042 40.909 0.00 0.00 0.00 3.01
52 53 4.974368 TTGCCATGTTATTTACCCGAAG 57.026 40.909 0.00 0.00 0.00 3.79
53 54 8.735315 CATATATTGCCATGTTATTTACCCGAA 58.265 33.333 0.00 0.00 0.00 4.30
54 55 7.885922 ACATATATTGCCATGTTATTTACCCGA 59.114 33.333 0.00 0.00 31.32 5.14
55 56 8.050778 ACATATATTGCCATGTTATTTACCCG 57.949 34.615 0.00 0.00 31.32 5.28
64 65 9.532494 ACCATTATGTACATATATTGCCATGTT 57.468 29.630 16.16 1.66 36.74 2.71
67 68 9.342308 GCTACCATTATGTACATATATTGCCAT 57.658 33.333 16.16 2.60 0.00 4.40
68 69 7.494298 CGCTACCATTATGTACATATATTGCCA 59.506 37.037 16.16 0.17 0.00 4.92
69 70 7.494625 ACGCTACCATTATGTACATATATTGCC 59.505 37.037 16.16 2.93 0.00 4.52
70 71 8.420374 ACGCTACCATTATGTACATATATTGC 57.580 34.615 16.16 13.67 0.00 3.56
76 77 9.984190 TTGAAATACGCTACCATTATGTACATA 57.016 29.630 11.62 11.62 0.00 2.29
77 78 8.896320 TTGAAATACGCTACCATTATGTACAT 57.104 30.769 13.93 13.93 0.00 2.29
78 79 8.719560 TTTGAAATACGCTACCATTATGTACA 57.280 30.769 0.00 0.00 0.00 2.90
79 80 8.823818 ACTTTGAAATACGCTACCATTATGTAC 58.176 33.333 0.00 0.00 0.00 2.90
80 81 8.951787 ACTTTGAAATACGCTACCATTATGTA 57.048 30.769 0.00 0.00 0.00 2.29
81 82 7.859325 ACTTTGAAATACGCTACCATTATGT 57.141 32.000 0.00 0.00 0.00 2.29
87 88 9.048446 GGATTATTACTTTGAAATACGCTACCA 57.952 33.333 0.00 0.00 0.00 3.25
88 89 9.048446 TGGATTATTACTTTGAAATACGCTACC 57.952 33.333 0.00 0.00 0.00 3.18
90 91 9.826574 ACTGGATTATTACTTTGAAATACGCTA 57.173 29.630 0.00 0.00 0.00 4.26
91 92 8.732746 ACTGGATTATTACTTTGAAATACGCT 57.267 30.769 0.00 0.00 0.00 5.07
92 93 9.434559 GAACTGGATTATTACTTTGAAATACGC 57.565 33.333 0.00 0.00 0.00 4.42
93 94 9.931210 GGAACTGGATTATTACTTTGAAATACG 57.069 33.333 0.00 0.00 0.00 3.06
96 97 8.470002 GCTGGAACTGGATTATTACTTTGAAAT 58.530 33.333 0.00 0.00 0.00 2.17
97 98 7.669722 AGCTGGAACTGGATTATTACTTTGAAA 59.330 33.333 0.00 0.00 0.00 2.69
98 99 7.175104 AGCTGGAACTGGATTATTACTTTGAA 58.825 34.615 0.00 0.00 0.00 2.69
99 100 6.721318 AGCTGGAACTGGATTATTACTTTGA 58.279 36.000 0.00 0.00 0.00 2.69
100 101 7.396540 AAGCTGGAACTGGATTATTACTTTG 57.603 36.000 0.00 0.00 0.00 2.77
101 102 7.122799 GGAAAGCTGGAACTGGATTATTACTTT 59.877 37.037 0.00 0.00 0.00 2.66
102 103 6.603599 GGAAAGCTGGAACTGGATTATTACTT 59.396 38.462 0.00 0.00 0.00 2.24
103 104 6.122964 GGAAAGCTGGAACTGGATTATTACT 58.877 40.000 0.00 0.00 0.00 2.24
104 105 5.885912 TGGAAAGCTGGAACTGGATTATTAC 59.114 40.000 0.00 0.00 0.00 1.89
105 106 5.885912 GTGGAAAGCTGGAACTGGATTATTA 59.114 40.000 0.00 0.00 0.00 0.98
106 107 4.706962 GTGGAAAGCTGGAACTGGATTATT 59.293 41.667 0.00 0.00 0.00 1.40
107 108 4.273318 GTGGAAAGCTGGAACTGGATTAT 58.727 43.478 0.00 0.00 0.00 1.28
108 109 3.686016 GTGGAAAGCTGGAACTGGATTA 58.314 45.455 0.00 0.00 0.00 1.75
114 115 1.961277 CGCGTGGAAAGCTGGAACT 60.961 57.895 0.00 0.00 39.95 3.01
119 120 1.922570 ACTATACGCGTGGAAAGCTG 58.077 50.000 24.59 5.70 39.95 4.24
122 123 7.082602 AGTAATCATACTATACGCGTGGAAAG 58.917 38.462 24.59 15.41 40.62 2.62
126 127 5.964168 GCTAGTAATCATACTATACGCGTGG 59.036 44.000 24.59 14.26 42.32 4.94
129 130 7.019418 TGTTGCTAGTAATCATACTATACGCG 58.981 38.462 3.53 3.53 42.32 6.01
206 207 9.878599 GCTTTCTAGCGCTTTTAAATATGATTA 57.121 29.630 18.68 0.00 37.71 1.75
286 287 7.095271 CCGACTTTTTGGTAATTGCATCAAATT 60.095 33.333 0.00 0.00 34.24 1.82
300 302 1.458927 CCTCCCCCGACTTTTTGGT 59.541 57.895 0.00 0.00 0.00 3.67
303 305 0.105913 TTTGCCTCCCCCGACTTTTT 60.106 50.000 0.00 0.00 0.00 1.94
305 307 0.114364 AATTTGCCTCCCCCGACTTT 59.886 50.000 0.00 0.00 0.00 2.66
309 311 0.113385 TGAAAATTTGCCTCCCCCGA 59.887 50.000 0.00 0.00 0.00 5.14
310 312 0.246360 GTGAAAATTTGCCTCCCCCG 59.754 55.000 0.00 0.00 0.00 5.73
312 314 0.389817 GCGTGAAAATTTGCCTCCCC 60.390 55.000 0.00 0.00 0.00 4.81
313 315 0.603065 AGCGTGAAAATTTGCCTCCC 59.397 50.000 0.00 0.00 0.00 4.30
314 316 1.669795 CCAGCGTGAAAATTTGCCTCC 60.670 52.381 0.00 0.00 0.00 4.30
315 317 1.000274 ACCAGCGTGAAAATTTGCCTC 60.000 47.619 0.00 0.00 0.00 4.70
316 318 1.000274 GACCAGCGTGAAAATTTGCCT 60.000 47.619 0.00 0.00 0.00 4.75
317 319 1.418373 GACCAGCGTGAAAATTTGCC 58.582 50.000 0.00 0.00 0.00 4.52
318 320 1.052287 CGACCAGCGTGAAAATTTGC 58.948 50.000 0.00 0.00 34.64 3.68
319 321 1.265635 TCCGACCAGCGTGAAAATTTG 59.734 47.619 0.00 0.00 38.67 2.32
320 322 1.600023 TCCGACCAGCGTGAAAATTT 58.400 45.000 0.00 0.00 38.67 1.82
321 323 1.737793 GATCCGACCAGCGTGAAAATT 59.262 47.619 0.00 0.00 38.67 1.82
322 324 1.066143 AGATCCGACCAGCGTGAAAAT 60.066 47.619 0.00 0.00 38.67 1.82
323 325 0.320374 AGATCCGACCAGCGTGAAAA 59.680 50.000 0.00 0.00 38.67 2.29
340 342 8.690203 TGGACTTCTCATGAATTACAAAAAGA 57.310 30.769 0.00 0.00 0.00 2.52
345 347 5.500234 CCCTGGACTTCTCATGAATTACAA 58.500 41.667 0.00 0.00 27.44 2.41
346 348 4.080356 CCCCTGGACTTCTCATGAATTACA 60.080 45.833 0.00 0.00 0.00 2.41
414 417 0.842635 AGATGAAGATGGACCAGCCC 59.157 55.000 6.01 0.00 34.97 5.19
416 419 2.170187 AGTCAGATGAAGATGGACCAGC 59.830 50.000 0.00 0.00 0.00 4.85
421 424 5.479724 CCAGCTATAGTCAGATGAAGATGGA 59.520 44.000 9.83 0.00 41.82 3.41
432 435 2.205074 CGTTTGGCCAGCTATAGTCAG 58.795 52.381 5.11 0.00 0.00 3.51
433 436 1.134521 CCGTTTGGCCAGCTATAGTCA 60.135 52.381 5.11 0.00 0.00 3.41
434 437 1.583054 CCGTTTGGCCAGCTATAGTC 58.417 55.000 5.11 0.00 0.00 2.59
435 438 0.180406 CCCGTTTGGCCAGCTATAGT 59.820 55.000 5.11 0.00 0.00 2.12
436 439 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
446 449 2.670251 TTAGCACGGCCCGTTTGG 60.670 61.111 5.76 0.00 38.32 3.28
447 450 1.964373 AGTTAGCACGGCCCGTTTG 60.964 57.895 5.76 0.00 38.32 2.93
448 451 1.964373 CAGTTAGCACGGCCCGTTT 60.964 57.895 5.76 0.00 38.32 3.60
449 452 2.358247 CAGTTAGCACGGCCCGTT 60.358 61.111 5.76 0.00 38.32 4.44
450 453 4.388499 CCAGTTAGCACGGCCCGT 62.388 66.667 1.02 1.02 42.36 5.28
455 458 4.077184 TCGGCCCAGTTAGCACGG 62.077 66.667 0.00 0.00 0.00 4.94
456 459 2.813908 GTCGGCCCAGTTAGCACG 60.814 66.667 0.00 0.00 0.00 5.34
457 460 2.436115 GGTCGGCCCAGTTAGCAC 60.436 66.667 0.00 0.00 0.00 4.40
467 470 4.814294 CGTGCTACTGGGTCGGCC 62.814 72.222 0.00 0.00 0.00 6.13
469 472 3.989698 CTGCGTGCTACTGGGTCGG 62.990 68.421 0.00 0.00 0.00 4.79
470 473 2.507102 CTGCGTGCTACTGGGTCG 60.507 66.667 0.00 0.00 0.00 4.79
471 474 2.125512 CCTGCGTGCTACTGGGTC 60.126 66.667 0.00 0.00 0.00 4.46
472 475 2.214216 TTCCTGCGTGCTACTGGGT 61.214 57.895 0.00 0.00 0.00 4.51
473 476 1.741770 GTTCCTGCGTGCTACTGGG 60.742 63.158 0.00 0.00 0.00 4.45
474 477 2.094659 CGTTCCTGCGTGCTACTGG 61.095 63.158 0.00 0.00 0.00 4.00
475 478 1.080772 TCGTTCCTGCGTGCTACTG 60.081 57.895 0.00 0.00 0.00 2.74
476 479 1.080705 GTCGTTCCTGCGTGCTACT 60.081 57.895 0.00 0.00 0.00 2.57
477 480 0.736325 ATGTCGTTCCTGCGTGCTAC 60.736 55.000 0.00 0.00 0.00 3.58
478 481 0.735978 CATGTCGTTCCTGCGTGCTA 60.736 55.000 0.00 0.00 0.00 3.49
479 482 2.029288 CATGTCGTTCCTGCGTGCT 61.029 57.895 0.00 0.00 0.00 4.40
480 483 2.476051 CATGTCGTTCCTGCGTGC 59.524 61.111 0.00 0.00 0.00 5.34
481 484 3.027170 GCCATGTCGTTCCTGCGTG 62.027 63.158 0.00 0.00 0.00 5.34
482 485 2.742372 GCCATGTCGTTCCTGCGT 60.742 61.111 0.00 0.00 0.00 5.24
483 486 3.499737 GGCCATGTCGTTCCTGCG 61.500 66.667 0.00 0.00 0.00 5.18
484 487 3.134127 GGGCCATGTCGTTCCTGC 61.134 66.667 4.39 0.00 0.00 4.85
485 488 1.746615 CTGGGCCATGTCGTTCCTG 60.747 63.158 6.72 0.00 0.00 3.86
486 489 2.671070 CTGGGCCATGTCGTTCCT 59.329 61.111 6.72 0.00 0.00 3.36
487 490 2.438434 CCTGGGCCATGTCGTTCC 60.438 66.667 6.72 0.00 0.00 3.62
488 491 3.134127 GCCTGGGCCATGTCGTTC 61.134 66.667 6.72 0.00 34.56 3.95
489 492 3.965258 TGCCTGGGCCATGTCGTT 61.965 61.111 6.72 0.00 41.09 3.85
490 493 4.722700 GTGCCTGGGCCATGTCGT 62.723 66.667 6.72 0.00 41.09 4.34
507 510 3.636313 TTTAGCTCGGGTCGTGCCG 62.636 63.158 10.10 0.00 45.54 5.69
508 511 2.098831 GTTTAGCTCGGGTCGTGCC 61.099 63.158 10.10 0.00 45.54 5.01
509 512 2.442188 CGTTTAGCTCGGGTCGTGC 61.442 63.158 0.00 6.29 44.90 5.34
510 513 1.804326 CCGTTTAGCTCGGGTCGTG 60.804 63.158 4.45 0.00 43.68 4.35
511 514 2.570181 CCGTTTAGCTCGGGTCGT 59.430 61.111 4.45 0.00 43.68 4.34
516 519 1.067582 CCTAGCCCGTTTAGCTCGG 59.932 63.158 5.38 5.38 46.49 4.63
517 520 1.591863 GCCTAGCCCGTTTAGCTCG 60.592 63.158 0.00 0.00 41.83 5.03
518 521 1.227586 GGCCTAGCCCGTTTAGCTC 60.228 63.158 0.00 0.00 44.06 4.09
519 522 2.908796 GGCCTAGCCCGTTTAGCT 59.091 61.111 0.00 0.00 44.06 3.32
598 601 0.524414 AAGAATTAAACGGGCCGTGC 59.476 50.000 34.87 17.06 39.99 5.34
599 602 3.239254 GAAAAGAATTAAACGGGCCGTG 58.761 45.455 34.87 4.16 39.99 4.94
600 603 2.885894 TGAAAAGAATTAAACGGGCCGT 59.114 40.909 28.83 28.83 43.97 5.68
601 604 3.189702 TCTGAAAAGAATTAAACGGGCCG 59.810 43.478 27.06 27.06 0.00 6.13
602 605 4.776795 TCTGAAAAGAATTAAACGGGCC 57.223 40.909 0.00 0.00 0.00 5.80
603 606 7.652300 AAAATCTGAAAAGAATTAAACGGGC 57.348 32.000 0.00 0.00 0.00 6.13
675 678 5.244626 CCCATCTGATTTTTAGCCTATTGGG 59.755 44.000 0.00 0.00 38.36 4.12
676 679 5.279156 GCCCATCTGATTTTTAGCCTATTGG 60.279 44.000 0.00 0.00 0.00 3.16
677 680 5.537674 AGCCCATCTGATTTTTAGCCTATTG 59.462 40.000 0.00 0.00 0.00 1.90
678 681 5.709594 AGCCCATCTGATTTTTAGCCTATT 58.290 37.500 0.00 0.00 0.00 1.73
679 682 5.330648 AGCCCATCTGATTTTTAGCCTAT 57.669 39.130 0.00 0.00 0.00 2.57
680 683 4.796110 AGCCCATCTGATTTTTAGCCTA 57.204 40.909 0.00 0.00 0.00 3.93
681 684 3.677156 AGCCCATCTGATTTTTAGCCT 57.323 42.857 0.00 0.00 0.00 4.58
682 685 3.254411 GCTAGCCCATCTGATTTTTAGCC 59.746 47.826 2.29 0.00 0.00 3.93
683 686 3.058639 CGCTAGCCCATCTGATTTTTAGC 60.059 47.826 9.66 8.83 0.00 3.09
684 687 4.024556 CACGCTAGCCCATCTGATTTTTAG 60.025 45.833 9.66 0.00 0.00 1.85
685 688 3.876914 CACGCTAGCCCATCTGATTTTTA 59.123 43.478 9.66 0.00 0.00 1.52
686 689 2.684881 CACGCTAGCCCATCTGATTTTT 59.315 45.455 9.66 0.00 0.00 1.94
687 690 2.292267 CACGCTAGCCCATCTGATTTT 58.708 47.619 9.66 0.00 0.00 1.82
688 691 1.959042 CACGCTAGCCCATCTGATTT 58.041 50.000 9.66 0.00 0.00 2.17
689 692 0.533755 GCACGCTAGCCCATCTGATT 60.534 55.000 9.66 0.00 0.00 2.57
690 693 1.070445 GCACGCTAGCCCATCTGAT 59.930 57.895 9.66 0.00 0.00 2.90
691 694 0.755327 TAGCACGCTAGCCCATCTGA 60.755 55.000 9.66 0.00 34.23 3.27
692 695 0.104855 TTAGCACGCTAGCCCATCTG 59.895 55.000 9.66 0.00 34.23 2.90
693 696 0.830648 TTTAGCACGCTAGCCCATCT 59.169 50.000 9.66 4.02 34.23 2.90
694 697 0.938008 GTTTAGCACGCTAGCCCATC 59.062 55.000 9.66 0.00 34.23 3.51
695 698 0.810031 CGTTTAGCACGCTAGCCCAT 60.810 55.000 9.66 0.00 43.37 4.00
696 699 1.447140 CGTTTAGCACGCTAGCCCA 60.447 57.895 9.66 0.00 43.37 5.36
697 700 3.395669 CGTTTAGCACGCTAGCCC 58.604 61.111 9.66 0.00 43.37 5.19
705 708 2.554272 CCGTGGCACGTTTAGCAC 59.446 61.111 34.74 0.00 40.58 4.40
706 709 2.666862 CCCGTGGCACGTTTAGCA 60.667 61.111 34.74 0.00 40.58 3.49
718 721 4.708386 TAAACAGGCCGGCCCGTG 62.708 66.667 41.72 34.33 39.21 4.94
719 722 1.912826 TATTAAACAGGCCGGCCCGT 61.913 55.000 41.72 35.53 39.21 5.28
720 723 1.153127 TATTAAACAGGCCGGCCCG 60.153 57.895 41.72 34.72 39.21 6.13
721 724 0.106868 ACTATTAAACAGGCCGGCCC 60.107 55.000 41.72 23.87 36.58 5.80
722 725 1.306148 GACTATTAAACAGGCCGGCC 58.694 55.000 39.29 39.29 0.00 6.13
723 726 1.940613 CTGACTATTAAACAGGCCGGC 59.059 52.381 21.18 21.18 0.00 6.13
724 727 2.561569 CCTGACTATTAAACAGGCCGG 58.438 52.381 0.00 0.00 43.32 6.13
729 732 2.351726 GCACGGCCTGACTATTAAACAG 59.648 50.000 0.00 0.00 0.00 3.16
730 733 2.352388 GCACGGCCTGACTATTAAACA 58.648 47.619 0.00 0.00 0.00 2.83
731 734 1.669265 GGCACGGCCTGACTATTAAAC 59.331 52.381 0.00 0.00 46.69 2.01
732 735 2.032680 GGCACGGCCTGACTATTAAA 57.967 50.000 0.00 0.00 46.69 1.52
733 736 3.772619 GGCACGGCCTGACTATTAA 57.227 52.632 0.00 0.00 46.69 1.40
746 749 4.463879 CTCTCTGGCCCAGGCACG 62.464 72.222 11.68 0.35 44.11 5.34
747 750 4.792804 GCTCTCTGGCCCAGGCAC 62.793 72.222 11.68 0.50 44.11 5.01
755 758 4.154347 CGGGAGTGGCTCTCTGGC 62.154 72.222 15.45 0.30 42.40 4.85
756 759 2.681778 ACGGGAGTGGCTCTCTGG 60.682 66.667 15.45 10.26 44.82 3.86
784 787 1.370587 TTTAATAGCCGTGCCGTGCC 61.371 55.000 5.11 0.00 0.00 5.01
785 788 0.247934 GTTTAATAGCCGTGCCGTGC 60.248 55.000 0.00 0.00 0.00 5.34
786 789 0.025770 CGTTTAATAGCCGTGCCGTG 59.974 55.000 0.00 0.00 0.00 4.94
787 790 0.390209 ACGTTTAATAGCCGTGCCGT 60.390 50.000 0.00 0.00 32.86 5.68
788 791 0.025770 CACGTTTAATAGCCGTGCCG 59.974 55.000 0.00 0.00 44.34 5.69
789 792 3.889780 CACGTTTAATAGCCGTGCC 57.110 52.632 0.00 0.00 44.34 5.01
795 798 1.596954 CGCCATGGCACGTTTAATAGC 60.597 52.381 34.93 4.60 42.06 2.97
796 799 1.002900 CCGCCATGGCACGTTTAATAG 60.003 52.381 34.93 15.02 42.06 1.73
797 800 1.018148 CCGCCATGGCACGTTTAATA 58.982 50.000 34.93 0.00 42.06 0.98
798 801 1.662438 CCCGCCATGGCACGTTTAAT 61.662 55.000 34.93 0.00 42.06 1.40
799 802 2.336478 CCCGCCATGGCACGTTTAA 61.336 57.895 34.93 0.00 42.06 1.52
800 803 2.748251 CCCGCCATGGCACGTTTA 60.748 61.111 34.93 0.00 42.06 2.01
823 826 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
824 827 2.588877 CTAATCGTGCCTGGCCCG 60.589 66.667 17.67 17.67 0.00 6.13
825 828 2.902343 GCTAATCGTGCCTGGCCC 60.902 66.667 17.53 2.94 0.00 5.80
826 829 2.124736 TGCTAATCGTGCCTGGCC 60.125 61.111 17.53 6.66 0.00 5.36
827 830 2.813179 CGTGCTAATCGTGCCTGGC 61.813 63.158 12.87 12.87 0.00 4.85
828 831 1.447838 ACGTGCTAATCGTGCCTGG 60.448 57.895 0.00 0.00 40.07 4.45
829 832 4.185413 ACGTGCTAATCGTGCCTG 57.815 55.556 0.00 0.00 40.07 4.85
857 860 2.672996 CAGACCTGGCCAAACGGG 60.673 66.667 7.01 7.12 42.81 5.28
858 861 3.365265 GCAGACCTGGCCAAACGG 61.365 66.667 7.01 7.56 0.00 4.44
859 862 1.926511 GATGCAGACCTGGCCAAACG 61.927 60.000 7.01 0.00 0.00 3.60
860 863 0.610232 AGATGCAGACCTGGCCAAAC 60.610 55.000 7.01 0.54 0.00 2.93
861 864 0.609957 CAGATGCAGACCTGGCCAAA 60.610 55.000 7.01 0.00 0.00 3.28
862 865 1.001764 CAGATGCAGACCTGGCCAA 60.002 57.895 7.01 0.00 0.00 4.52
863 866 1.919816 TCAGATGCAGACCTGGCCA 60.920 57.895 4.71 4.71 0.00 5.36
864 867 1.451028 GTCAGATGCAGACCTGGCC 60.451 63.158 0.00 0.00 0.00 5.36
865 868 1.812922 CGTCAGATGCAGACCTGGC 60.813 63.158 11.91 9.89 32.41 4.85
866 869 1.153489 CCGTCAGATGCAGACCTGG 60.153 63.158 11.91 0.00 32.41 4.45
867 870 1.153489 CCCGTCAGATGCAGACCTG 60.153 63.158 7.09 7.09 32.41 4.00
868 871 1.194781 AACCCGTCAGATGCAGACCT 61.195 55.000 0.00 0.00 32.41 3.85
869 872 1.021390 CAACCCGTCAGATGCAGACC 61.021 60.000 0.00 0.00 32.41 3.85
870 873 1.021390 CCAACCCGTCAGATGCAGAC 61.021 60.000 0.00 0.00 0.00 3.51
874 877 3.134127 GCCCAACCCGTCAGATGC 61.134 66.667 0.00 0.00 0.00 3.91
901 904 2.031919 CACACTGTAAGCGGGCCA 59.968 61.111 4.39 0.00 37.60 5.36
934 938 1.905894 AGAGGAAGAGGAGGAGCAAAC 59.094 52.381 0.00 0.00 0.00 2.93
948 952 4.639776 CGGAGAGACGGAGAGGAA 57.360 61.111 0.00 0.00 0.00 3.36
1089 1138 1.229984 AAGAGTTGGAGGGGGAGGG 60.230 63.158 0.00 0.00 0.00 4.30
1130 1181 2.840066 CGGCGCAGGAACAACCAAA 61.840 57.895 10.83 0.00 42.04 3.28
1255 1321 2.568612 CTGAAGGCGCGAGTGAGA 59.431 61.111 12.10 0.00 0.00 3.27
1284 1350 3.099905 ACATAGTGAGCTGAGCCTTGTA 58.900 45.455 0.00 0.00 0.00 2.41
1289 1355 3.388308 CACATACATAGTGAGCTGAGCC 58.612 50.000 0.00 0.00 39.30 4.70
1313 1379 7.446931 TGAGAGGATCAGCTAGTTAGTTATCTG 59.553 40.741 0.00 0.00 37.82 2.90
1315 1381 7.753309 TGAGAGGATCAGCTAGTTAGTTATC 57.247 40.000 0.00 0.00 37.82 1.75
1317 1383 6.890268 TGTTGAGAGGATCAGCTAGTTAGTTA 59.110 38.462 0.00 0.00 39.70 2.24
1319 1385 5.265191 TGTTGAGAGGATCAGCTAGTTAGT 58.735 41.667 0.00 0.00 39.70 2.24
1320 1386 5.843673 TGTTGAGAGGATCAGCTAGTTAG 57.156 43.478 0.00 0.00 39.70 2.34
1335 1401 8.298854 ACATTCGATTCAATTTCAATGTTGAGA 58.701 29.630 0.00 0.00 38.61 3.27
1370 1442 0.464373 ACACACACAGGACAGCAAGG 60.464 55.000 0.00 0.00 0.00 3.61
1371 1443 0.659427 CACACACACAGGACAGCAAG 59.341 55.000 0.00 0.00 0.00 4.01
1372 1444 1.375853 GCACACACACAGGACAGCAA 61.376 55.000 0.00 0.00 0.00 3.91
1373 1445 1.819208 GCACACACACAGGACAGCA 60.819 57.895 0.00 0.00 0.00 4.41
1374 1446 1.779025 CTGCACACACACAGGACAGC 61.779 60.000 0.00 0.00 0.00 4.40
1375 1447 1.779025 GCTGCACACACACAGGACAG 61.779 60.000 0.00 0.00 34.38 3.51
1376 1448 1.819208 GCTGCACACACACAGGACA 60.819 57.895 0.00 0.00 34.38 4.02
1377 1449 1.502163 GAGCTGCACACACACAGGAC 61.502 60.000 1.02 0.00 34.38 3.85
1378 1450 1.227645 GAGCTGCACACACACAGGA 60.228 57.895 1.02 0.00 34.38 3.86
1379 1451 1.096967 TTGAGCTGCACACACACAGG 61.097 55.000 1.02 0.00 34.38 4.00
1430 1518 8.006298 TCTTGTTCTTTATTCTTTGCAGGAAA 57.994 30.769 7.98 0.00 0.00 3.13
1553 1641 0.948623 CGGTGATCTTGCAACGGACA 60.949 55.000 0.00 0.00 44.76 4.02
1685 1779 1.603802 CTTTGACGCACACACATTCCT 59.396 47.619 0.00 0.00 0.00 3.36
1843 1962 6.198966 CCAAGTTAGCACAAACTGAATGTTTC 59.801 38.462 0.56 0.00 46.11 2.78
1856 1975 0.464735 ACAACGCCCAAGTTAGCACA 60.465 50.000 0.00 0.00 32.35 4.57
1889 2008 3.438781 TGGAAGCTAAATACAAGCAACGG 59.561 43.478 0.00 0.00 42.62 4.44
1890 2009 4.678509 TGGAAGCTAAATACAAGCAACG 57.321 40.909 0.00 0.00 42.62 4.10
1912 2031 8.472413 CAAGACATCCATTTCCAAAATGTAGAT 58.528 33.333 10.55 5.43 31.04 1.98
1913 2032 7.093814 CCAAGACATCCATTTCCAAAATGTAGA 60.094 37.037 10.55 3.67 31.04 2.59
1917 2036 5.797051 ACCAAGACATCCATTTCCAAAATG 58.203 37.500 5.60 5.60 0.00 2.32
1918 2037 6.953520 TCTACCAAGACATCCATTTCCAAAAT 59.046 34.615 0.00 0.00 0.00 1.82
1921 2040 5.512942 TCTACCAAGACATCCATTTCCAA 57.487 39.130 0.00 0.00 0.00 3.53
1924 2043 5.357878 TGCAATCTACCAAGACATCCATTTC 59.642 40.000 0.00 0.00 33.57 2.17
1925 2044 5.263599 TGCAATCTACCAAGACATCCATTT 58.736 37.500 0.00 0.00 33.57 2.32
1928 2047 3.519107 TCTGCAATCTACCAAGACATCCA 59.481 43.478 0.00 0.00 33.57 3.41
1929 2048 4.142609 TCTGCAATCTACCAAGACATCC 57.857 45.455 0.00 0.00 33.57 3.51
1934 2053 4.842531 TGGAATCTGCAATCTACCAAGA 57.157 40.909 0.00 0.00 35.80 3.02
1935 2054 5.416952 AGTTTGGAATCTGCAATCTACCAAG 59.583 40.000 0.00 0.00 37.27 3.61
1936 2055 5.183713 CAGTTTGGAATCTGCAATCTACCAA 59.816 40.000 0.00 0.00 34.76 3.67
1937 2056 4.701651 CAGTTTGGAATCTGCAATCTACCA 59.298 41.667 0.00 0.00 28.75 3.25
1938 2057 5.240713 CAGTTTGGAATCTGCAATCTACC 57.759 43.478 0.00 0.00 28.75 3.18
1947 2066 7.325660 ACATACTAATGCAGTTTGGAATCTG 57.674 36.000 0.00 0.00 39.69 2.90
1949 2068 7.485913 CACAACATACTAATGCAGTTTGGAATC 59.514 37.037 0.00 0.00 39.69 2.52
1950 2069 7.315142 CACAACATACTAATGCAGTTTGGAAT 58.685 34.615 0.00 0.00 39.69 3.01
1951 2070 6.294453 CCACAACATACTAATGCAGTTTGGAA 60.294 38.462 0.00 0.00 39.69 3.53
1952 2071 5.182950 CCACAACATACTAATGCAGTTTGGA 59.817 40.000 0.00 0.00 39.69 3.53
1955 2074 4.082245 GCCCACAACATACTAATGCAGTTT 60.082 41.667 0.00 0.00 38.80 2.66
1957 2076 3.016736 GCCCACAACATACTAATGCAGT 58.983 45.455 0.00 0.00 41.62 4.40
1958 2077 3.016031 TGCCCACAACATACTAATGCAG 58.984 45.455 0.00 0.00 36.50 4.41
1960 2079 4.654091 ATTGCCCACAACATACTAATGC 57.346 40.909 0.00 0.00 38.99 3.56
2115 2478 4.277672 CAGGGTGAATTCAGATTGCCATAG 59.722 45.833 8.80 0.00 0.00 2.23
2134 2498 2.026822 AGTAATGCACAGGAGAACAGGG 60.027 50.000 0.00 0.00 0.00 4.45
2223 2597 7.092710 CAACTTTACGGTTGTCATGAAAATG 57.907 36.000 0.61 0.60 40.92 2.32
2396 2775 3.169908 TGATGTGTGCCACTAGAACCTA 58.830 45.455 0.00 0.00 35.11 3.08
2408 2787 3.425359 CGAAGATGAAACCTGATGTGTGC 60.425 47.826 0.00 0.00 0.00 4.57
2410 2789 2.744202 GCGAAGATGAAACCTGATGTGT 59.256 45.455 0.00 0.00 0.00 3.72
2414 2793 1.656652 CGGCGAAGATGAAACCTGAT 58.343 50.000 0.00 0.00 0.00 2.90
2441 2820 3.009723 CCTGCCTTAACGATGTGACAAT 58.990 45.455 0.00 0.00 0.00 2.71
2451 2830 1.148310 CACAGTCACCTGCCTTAACG 58.852 55.000 0.00 0.00 42.81 3.18
2529 2914 2.775911 TGCACAGGAAGGAGAATGAG 57.224 50.000 0.00 0.00 0.00 2.90
2530 2915 3.726557 ATTGCACAGGAAGGAGAATGA 57.273 42.857 0.00 0.00 0.00 2.57
2531 2916 3.760151 TCAATTGCACAGGAAGGAGAATG 59.240 43.478 0.00 0.00 0.00 2.67
2587 2990 4.459685 GGCTCAGTCTTTGTCTACAGTCTA 59.540 45.833 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.