Multiple sequence alignment - TraesCS3A01G530400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G530400 chr3A 100.000 2198 0 0 1 2198 743675290 743673093 0.000000e+00 4060.0
1 TraesCS3A01G530400 chr3A 94.953 535 19 3 273 807 397551270 397550744 0.000000e+00 832.0
2 TraesCS3A01G530400 chr3A 94.643 336 14 2 1602 1936 12175371 12175703 3.230000e-143 518.0
3 TraesCS3A01G530400 chr3A 86.122 490 40 16 870 1345 743758376 743757901 9.060000e-139 503.0
4 TraesCS3A01G530400 chr3A 83.274 281 33 7 1233 1510 743523760 743523491 1.690000e-61 246.0
5 TraesCS3A01G530400 chr3A 84.091 220 29 4 1137 1354 743757787 743757572 7.950000e-50 207.0
6 TraesCS3A01G530400 chr3D 94.177 893 47 5 638 1529 609923147 609922259 0.000000e+00 1356.0
7 TraesCS3A01G530400 chr3D 86.094 489 40 18 870 1345 609929185 609928712 3.260000e-138 501.0
8 TraesCS3A01G530400 chr3D 90.909 154 14 0 1233 1386 609921626 609921473 7.950000e-50 207.0
9 TraesCS3A01G530400 chr3B 92.025 953 62 6 657 1602 821077316 821076371 0.000000e+00 1327.0
10 TraesCS3A01G530400 chr3B 86.653 487 37 15 870 1345 821089650 821089181 4.180000e-142 514.0
11 TraesCS3A01G530400 chr3B 92.754 138 10 0 1249 1386 32695122 32695259 1.330000e-47 200.0
12 TraesCS3A01G530400 chr2A 94.342 813 34 4 1 807 33752333 33751527 0.000000e+00 1236.0
13 TraesCS3A01G530400 chr2A 94.766 535 22 2 273 807 190870821 190870293 0.000000e+00 828.0
14 TraesCS3A01G530400 chr2A 95.154 454 16 2 354 807 119623486 119623039 0.000000e+00 712.0
15 TraesCS3A01G530400 chr2A 94.627 335 15 1 1602 1936 693233692 693233361 1.160000e-142 516.0
16 TraesCS3A01G530400 chr2A 94.311 334 16 1 1602 1935 1504303 1503973 1.950000e-140 508.0
17 TraesCS3A01G530400 chr2A 93.939 330 17 1 1603 1932 200415576 200415902 1.520000e-136 496.0
18 TraesCS3A01G530400 chr2A 93.939 330 17 1 1603 1932 230805614 230805940 1.520000e-136 496.0
19 TraesCS3A01G530400 chr2A 92.727 330 21 1 1603 1932 744619550 744619876 7.100000e-130 473.0
20 TraesCS3A01G530400 chr2A 92.145 331 23 1 1601 1931 141535828 141535501 4.270000e-127 464.0
21 TraesCS3A01G530400 chr2A 80.357 280 24 15 257 515 381843891 381844160 1.340000e-42 183.0
22 TraesCS3A01G530400 chr2A 100.000 30 0 0 1603 1632 583601413 583601442 3.050000e-04 56.5
23 TraesCS3A01G530400 chr6A 95.888 535 16 2 273 807 11802960 11803488 0.000000e+00 861.0
24 TraesCS3A01G530400 chr6A 95.888 535 16 2 273 807 124864771 124865299 0.000000e+00 861.0
25 TraesCS3A01G530400 chr6A 94.953 535 21 2 273 807 42147732 42147204 0.000000e+00 833.0
26 TraesCS3A01G530400 chr1A 95.310 533 19 2 275 807 568484069 568483543 0.000000e+00 841.0
27 TraesCS3A01G530400 chr1A 95.374 454 15 2 354 807 8937170 8936723 0.000000e+00 717.0
28 TraesCS3A01G530400 chr5A 94.328 335 14 3 1603 1936 680837584 680837254 1.950000e-140 508.0
29 TraesCS3A01G530400 chr5A 94.463 307 13 2 1627 1933 368127404 368127706 9.190000e-129 470.0
30 TraesCS3A01G530400 chr4A 91.707 205 17 0 995 1199 414423455 414423251 3.570000e-73 285.0
31 TraesCS3A01G530400 chr4D 91.584 202 17 0 995 1196 216533969 216534170 1.660000e-71 279.0
32 TraesCS3A01G530400 chr4B 90.732 205 19 0 995 1199 245682918 245682714 7.730000e-70 274.0
33 TraesCS3A01G530400 chr1B 91.429 140 12 0 1247 1386 32216344 32216483 2.230000e-45 193.0
34 TraesCS3A01G530400 chr1B 91.429 140 12 0 1247 1386 35119139 35119278 2.230000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G530400 chr3A 743673093 743675290 2197 True 4060.0 4060 100.0000 1 2198 1 chr3A.!!$R3 2197
1 TraesCS3A01G530400 chr3A 397550744 397551270 526 True 832.0 832 94.9530 273 807 1 chr3A.!!$R1 534
2 TraesCS3A01G530400 chr3A 743757572 743758376 804 True 355.0 503 85.1065 870 1354 2 chr3A.!!$R4 484
3 TraesCS3A01G530400 chr3D 609921473 609923147 1674 True 781.5 1356 92.5430 638 1529 2 chr3D.!!$R2 891
4 TraesCS3A01G530400 chr3B 821076371 821077316 945 True 1327.0 1327 92.0250 657 1602 1 chr3B.!!$R1 945
5 TraesCS3A01G530400 chr2A 33751527 33752333 806 True 1236.0 1236 94.3420 1 807 1 chr2A.!!$R2 806
6 TraesCS3A01G530400 chr2A 190870293 190870821 528 True 828.0 828 94.7660 273 807 1 chr2A.!!$R5 534
7 TraesCS3A01G530400 chr6A 11802960 11803488 528 False 861.0 861 95.8880 273 807 1 chr6A.!!$F1 534
8 TraesCS3A01G530400 chr6A 124864771 124865299 528 False 861.0 861 95.8880 273 807 1 chr6A.!!$F2 534
9 TraesCS3A01G530400 chr6A 42147204 42147732 528 True 833.0 833 94.9530 273 807 1 chr6A.!!$R1 534
10 TraesCS3A01G530400 chr1A 568483543 568484069 526 True 841.0 841 95.3100 275 807 1 chr1A.!!$R2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.105964 TCGAAATATGCCTCGGGGTG 59.894 55.0 1.62 0.0 35.76 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2019 0.036164 ATACCTGTGCTGCCGTCAAA 59.964 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.896220 TGCTTGTTTCATCTTCCGCT 58.104 45.000 0.00 0.00 0.00 5.52
84 85 2.226437 TGCTTGTTTCATCTTCCGCTTC 59.774 45.455 0.00 0.00 0.00 3.86
85 86 2.414691 GCTTGTTTCATCTTCCGCTTCC 60.415 50.000 0.00 0.00 0.00 3.46
102 103 1.604604 TCCAGTGCCTAGTTTTGTGC 58.395 50.000 0.00 0.00 0.00 4.57
108 109 2.943033 GTGCCTAGTTTTGTGCCGATAT 59.057 45.455 0.00 0.00 0.00 1.63
123 124 3.733337 CCGATATTGGCAGCTACTCTTT 58.267 45.455 0.00 0.00 0.00 2.52
131 132 3.316588 TGGCAGCTACTCTTTAGATCTCG 59.683 47.826 0.00 0.00 0.00 4.04
135 136 6.212955 GCAGCTACTCTTTAGATCTCGAAAT 58.787 40.000 0.00 0.00 0.00 2.17
148 149 0.105964 TCGAAATATGCCTCGGGGTG 59.894 55.000 1.62 0.00 35.76 4.61
208 213 3.181514 CGGGCCTTATTCTGTGTAAAACG 60.182 47.826 0.84 0.00 0.00 3.60
228 233 5.751243 ACGTAATTATTGTTGGAGCCATC 57.249 39.130 0.00 0.00 0.00 3.51
254 259 3.044305 GCGGCGACCATAGGCATC 61.044 66.667 12.98 0.00 0.00 3.91
257 262 1.963338 GGCGACCATAGGCATCAGC 60.963 63.158 0.00 0.00 41.10 4.26
260 265 0.941463 CGACCATAGGCATCAGCGTC 60.941 60.000 0.00 0.00 43.41 5.19
264 269 1.069823 CCATAGGCATCAGCGTCTCTT 59.930 52.381 0.00 0.00 43.41 2.85
265 270 2.133553 CATAGGCATCAGCGTCTCTTG 58.866 52.381 0.00 0.00 43.41 3.02
300 307 3.114616 GTCATCTGTGTGCGCGCT 61.115 61.111 33.29 6.82 0.00 5.92
346 353 5.163713 GGGCTAGAGTAAAGTGCAGAAATTG 60.164 44.000 0.00 0.00 0.00 2.32
432 439 3.190327 CCAGTGAACATATGCGGTTGAAA 59.810 43.478 1.58 0.00 0.00 2.69
447 454 5.615984 GCGGTTGAAAATGATACGTTTCTGA 60.616 40.000 7.53 0.00 35.26 3.27
615 622 3.225104 ACATTGCTTGTGGACACTCAAT 58.775 40.909 3.91 7.82 37.11 2.57
618 625 2.497138 TGCTTGTGGACACTCAATCTG 58.503 47.619 3.91 0.00 30.57 2.90
662 669 2.000447 GTAGCGAAACCATGGACTGAC 59.000 52.381 21.47 4.67 0.00 3.51
695 705 2.043115 ACATAGGGACCTGACTGAGTCA 59.957 50.000 15.36 15.36 40.50 3.41
696 706 3.303938 CATAGGGACCTGACTGAGTCAT 58.696 50.000 16.59 1.46 41.94 3.06
697 707 2.334006 AGGGACCTGACTGAGTCATT 57.666 50.000 16.59 6.15 41.94 2.57
698 708 3.474798 AGGGACCTGACTGAGTCATTA 57.525 47.619 16.59 0.00 41.94 1.90
699 709 4.000928 AGGGACCTGACTGAGTCATTAT 57.999 45.455 16.59 4.42 41.94 1.28
933 943 3.562505 CTGTTCTGCTTGAAAGTGCATC 58.437 45.455 0.00 0.00 38.59 3.91
1026 1042 2.357517 CAGGTGAAGCTCGCGGTT 60.358 61.111 6.13 0.00 0.00 4.44
1131 1147 1.639722 TCATGAGGAACGTCAAGGGA 58.360 50.000 0.00 0.00 0.00 4.20
1228 1244 7.171630 TCTTCCTTTATACCTGTCTGTCTTC 57.828 40.000 0.00 0.00 0.00 2.87
1277 1299 6.618811 CCTTCTTAGTCTACTGCTTTCGTTA 58.381 40.000 0.00 0.00 0.00 3.18
1308 1330 4.100189 AGCTATGTGGAGGTGTAATGAGTC 59.900 45.833 0.00 0.00 0.00 3.36
1367 1389 4.214758 TGTGAGACTTGATCATTGTTGCAG 59.785 41.667 0.00 0.00 0.00 4.41
1443 1492 0.401356 TCATCATGTGCCTGTGGTGT 59.599 50.000 0.00 0.00 0.00 4.16
1488 1539 1.070105 CCGGAACCAAACTCGTGGA 59.930 57.895 0.00 0.00 41.65 4.02
1536 1591 0.681175 ATGTCTGCCAGCCCAAAAAC 59.319 50.000 0.00 0.00 0.00 2.43
1537 1592 1.367471 GTCTGCCAGCCCAAAAACC 59.633 57.895 0.00 0.00 0.00 3.27
1542 1597 1.459348 CCAGCCCAAAAACCCCACT 60.459 57.895 0.00 0.00 0.00 4.00
1543 1598 0.178947 CCAGCCCAAAAACCCCACTA 60.179 55.000 0.00 0.00 0.00 2.74
1554 1609 1.338136 ACCCCACTAAGAGCCATCCG 61.338 60.000 0.00 0.00 0.00 4.18
1555 1610 1.048724 CCCCACTAAGAGCCATCCGA 61.049 60.000 0.00 0.00 0.00 4.55
1560 1615 1.757699 ACTAAGAGCCATCCGAACTCC 59.242 52.381 0.00 0.00 0.00 3.85
1567 1622 2.687566 ATCCGAACTCCGCCCCTT 60.688 61.111 0.00 0.00 36.84 3.95
1574 1629 2.222027 GAACTCCGCCCCTTGAATATG 58.778 52.381 0.00 0.00 0.00 1.78
1577 1632 0.465460 TCCGCCCCTTGAATATGTGC 60.465 55.000 0.00 0.00 0.00 4.57
1620 1675 1.492764 GGGAACCGGATCCTCTAACA 58.507 55.000 27.91 0.00 40.86 2.41
1621 1676 2.047830 GGGAACCGGATCCTCTAACAT 58.952 52.381 27.91 0.00 40.86 2.71
1622 1677 2.438392 GGGAACCGGATCCTCTAACATT 59.562 50.000 27.91 0.00 40.86 2.71
1623 1678 3.467803 GGAACCGGATCCTCTAACATTG 58.532 50.000 22.87 0.00 36.50 2.82
1624 1679 3.134081 GGAACCGGATCCTCTAACATTGA 59.866 47.826 22.87 0.00 36.50 2.57
1625 1680 4.372656 GAACCGGATCCTCTAACATTGAG 58.627 47.826 9.46 0.00 0.00 3.02
1626 1681 3.643237 ACCGGATCCTCTAACATTGAGA 58.357 45.455 9.46 0.00 33.68 3.27
1627 1682 4.030913 ACCGGATCCTCTAACATTGAGAA 58.969 43.478 9.46 0.00 33.68 2.87
1628 1683 4.100189 ACCGGATCCTCTAACATTGAGAAG 59.900 45.833 9.46 0.00 33.68 2.85
1629 1684 4.502259 CCGGATCCTCTAACATTGAGAAGG 60.502 50.000 10.75 0.00 33.68 3.46
1630 1685 4.342378 CGGATCCTCTAACATTGAGAAGGA 59.658 45.833 10.75 0.00 33.68 3.36
1631 1686 5.163405 CGGATCCTCTAACATTGAGAAGGAA 60.163 44.000 10.75 0.00 33.68 3.36
1632 1687 6.463614 CGGATCCTCTAACATTGAGAAGGAAT 60.464 42.308 10.75 0.00 33.68 3.01
1633 1688 6.709846 GGATCCTCTAACATTGAGAAGGAATG 59.290 42.308 3.84 0.00 36.94 2.67
1634 1689 6.627087 TCCTCTAACATTGAGAAGGAATGT 57.373 37.500 0.00 0.00 44.21 2.71
1635 1690 6.644347 TCCTCTAACATTGAGAAGGAATGTC 58.356 40.000 0.00 0.00 42.04 3.06
1636 1691 6.213397 TCCTCTAACATTGAGAAGGAATGTCA 59.787 38.462 0.00 0.00 42.04 3.58
1637 1692 6.314896 CCTCTAACATTGAGAAGGAATGTCAC 59.685 42.308 0.00 0.00 42.04 3.67
1638 1693 6.173339 TCTAACATTGAGAAGGAATGTCACC 58.827 40.000 0.00 0.00 42.04 4.02
1639 1694 3.338249 ACATTGAGAAGGAATGTCACCG 58.662 45.455 0.00 0.00 39.34 4.94
1640 1695 3.244561 ACATTGAGAAGGAATGTCACCGT 60.245 43.478 0.00 0.00 39.34 4.83
1641 1696 2.455674 TGAGAAGGAATGTCACCGTG 57.544 50.000 0.00 0.00 0.00 4.94
1642 1697 1.079503 GAGAAGGAATGTCACCGTGC 58.920 55.000 0.00 0.00 0.00 5.34
1643 1698 0.687354 AGAAGGAATGTCACCGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
1644 1699 1.899814 AGAAGGAATGTCACCGTGCTA 59.100 47.619 0.00 0.00 0.00 3.49
1645 1700 2.000447 GAAGGAATGTCACCGTGCTAC 59.000 52.381 0.00 0.00 0.00 3.58
1646 1701 0.973632 AGGAATGTCACCGTGCTACA 59.026 50.000 0.00 0.00 0.00 2.74
1647 1702 1.346395 AGGAATGTCACCGTGCTACAA 59.654 47.619 0.00 0.00 0.00 2.41
1648 1703 2.027192 AGGAATGTCACCGTGCTACAAT 60.027 45.455 0.00 0.00 0.00 2.71
1649 1704 2.095853 GGAATGTCACCGTGCTACAATG 59.904 50.000 0.00 0.00 0.00 2.82
1650 1705 2.472695 ATGTCACCGTGCTACAATGT 57.527 45.000 0.00 0.00 0.00 2.71
1651 1706 2.248280 TGTCACCGTGCTACAATGTT 57.752 45.000 0.00 0.00 0.00 2.71
1652 1707 3.388345 TGTCACCGTGCTACAATGTTA 57.612 42.857 0.00 0.00 0.00 2.41
1653 1708 3.322369 TGTCACCGTGCTACAATGTTAG 58.678 45.455 0.00 0.00 0.00 2.34
1654 1709 2.671396 GTCACCGTGCTACAATGTTAGG 59.329 50.000 0.00 0.00 0.00 2.69
1655 1710 1.396996 CACCGTGCTACAATGTTAGGC 59.603 52.381 0.00 0.00 0.00 3.93
1656 1711 1.014352 CCGTGCTACAATGTTAGGCC 58.986 55.000 0.00 0.00 0.00 5.19
1657 1712 1.677518 CCGTGCTACAATGTTAGGCCA 60.678 52.381 5.01 0.00 0.00 5.36
1658 1713 1.665679 CGTGCTACAATGTTAGGCCAG 59.334 52.381 5.01 0.00 0.00 4.85
1659 1714 2.711542 GTGCTACAATGTTAGGCCAGT 58.288 47.619 5.01 0.00 0.00 4.00
1660 1715 2.420022 GTGCTACAATGTTAGGCCAGTG 59.580 50.000 5.01 0.00 36.54 3.66
1661 1716 2.039746 TGCTACAATGTTAGGCCAGTGT 59.960 45.455 5.01 1.64 44.82 3.55
1662 1717 3.262151 TGCTACAATGTTAGGCCAGTGTA 59.738 43.478 5.01 2.95 41.40 2.90
1663 1718 4.258543 GCTACAATGTTAGGCCAGTGTAA 58.741 43.478 5.01 0.00 43.00 2.41
1664 1719 4.698304 GCTACAATGTTAGGCCAGTGTAAA 59.302 41.667 5.01 0.00 43.00 2.01
1665 1720 5.182380 GCTACAATGTTAGGCCAGTGTAAAA 59.818 40.000 5.01 0.00 43.00 1.52
1666 1721 5.447624 ACAATGTTAGGCCAGTGTAAAAC 57.552 39.130 5.01 0.00 41.40 2.43
1667 1722 4.023536 ACAATGTTAGGCCAGTGTAAAACG 60.024 41.667 5.01 0.00 41.40 3.60
1668 1723 3.472283 TGTTAGGCCAGTGTAAAACGA 57.528 42.857 5.01 0.00 0.00 3.85
1669 1724 3.806380 TGTTAGGCCAGTGTAAAACGAA 58.194 40.909 5.01 0.00 0.00 3.85
1670 1725 3.810941 TGTTAGGCCAGTGTAAAACGAAG 59.189 43.478 5.01 0.00 0.00 3.79
1671 1726 2.922740 AGGCCAGTGTAAAACGAAGA 57.077 45.000 5.01 0.00 0.00 2.87
1672 1727 3.202829 AGGCCAGTGTAAAACGAAGAA 57.797 42.857 5.01 0.00 0.00 2.52
1673 1728 3.139077 AGGCCAGTGTAAAACGAAGAAG 58.861 45.455 5.01 0.00 0.00 2.85
1674 1729 3.135994 GGCCAGTGTAAAACGAAGAAGA 58.864 45.455 0.00 0.00 0.00 2.87
1675 1730 3.562557 GGCCAGTGTAAAACGAAGAAGAA 59.437 43.478 0.00 0.00 0.00 2.52
1676 1731 4.035909 GGCCAGTGTAAAACGAAGAAGAAA 59.964 41.667 0.00 0.00 0.00 2.52
1677 1732 5.449451 GGCCAGTGTAAAACGAAGAAGAAAA 60.449 40.000 0.00 0.00 0.00 2.29
1678 1733 5.681543 GCCAGTGTAAAACGAAGAAGAAAAG 59.318 40.000 0.00 0.00 0.00 2.27
1679 1734 6.677187 GCCAGTGTAAAACGAAGAAGAAAAGT 60.677 38.462 0.00 0.00 0.00 2.66
1680 1735 7.248437 CCAGTGTAAAACGAAGAAGAAAAGTT 58.752 34.615 0.00 0.00 0.00 2.66
1681 1736 8.392612 CCAGTGTAAAACGAAGAAGAAAAGTTA 58.607 33.333 0.00 0.00 0.00 2.24
1682 1737 9.422196 CAGTGTAAAACGAAGAAGAAAAGTTAG 57.578 33.333 0.00 0.00 0.00 2.34
1683 1738 9.374838 AGTGTAAAACGAAGAAGAAAAGTTAGA 57.625 29.630 0.00 0.00 0.00 2.10
1684 1739 9.634300 GTGTAAAACGAAGAAGAAAAGTTAGAG 57.366 33.333 0.00 0.00 0.00 2.43
1685 1740 9.590451 TGTAAAACGAAGAAGAAAAGTTAGAGA 57.410 29.630 0.00 0.00 0.00 3.10
1686 1741 9.846738 GTAAAACGAAGAAGAAAAGTTAGAGAC 57.153 33.333 0.00 0.00 0.00 3.36
1687 1742 8.719560 AAAACGAAGAAGAAAAGTTAGAGACT 57.280 30.769 0.00 0.00 41.47 3.24
1688 1743 7.701809 AACGAAGAAGAAAAGTTAGAGACTG 57.298 36.000 0.00 0.00 39.00 3.51
1689 1744 6.807789 ACGAAGAAGAAAAGTTAGAGACTGT 58.192 36.000 0.00 0.00 39.00 3.55
1690 1745 7.266400 ACGAAGAAGAAAAGTTAGAGACTGTT 58.734 34.615 0.00 0.00 38.56 3.16
1691 1746 8.411683 ACGAAGAAGAAAAGTTAGAGACTGTTA 58.588 33.333 0.00 0.00 35.91 2.41
1692 1747 8.907685 CGAAGAAGAAAAGTTAGAGACTGTTAG 58.092 37.037 0.00 0.00 35.91 2.34
1693 1748 9.752961 GAAGAAGAAAAGTTAGAGACTGTTAGT 57.247 33.333 0.00 0.00 35.91 2.24
1730 1785 8.161699 AGGTTGTTTAGTGTTGGTATTTACTG 57.838 34.615 0.00 0.00 0.00 2.74
1731 1786 7.776500 AGGTTGTTTAGTGTTGGTATTTACTGT 59.224 33.333 0.00 0.00 0.00 3.55
1732 1787 9.054922 GGTTGTTTAGTGTTGGTATTTACTGTA 57.945 33.333 0.00 0.00 0.00 2.74
1818 1873 9.074576 ACTATAAATGTGTACGGTAGATCATCA 57.925 33.333 0.00 0.00 0.00 3.07
1819 1874 9.908152 CTATAAATGTGTACGGTAGATCATCAA 57.092 33.333 0.00 0.00 0.00 2.57
1821 1876 9.778741 ATAAATGTGTACGGTAGATCATCAAAT 57.221 29.630 0.00 0.00 0.00 2.32
1822 1877 8.506168 AAATGTGTACGGTAGATCATCAAATT 57.494 30.769 0.00 0.00 0.00 1.82
1823 1878 6.902224 TGTGTACGGTAGATCATCAAATTG 57.098 37.500 0.00 0.00 0.00 2.32
1824 1879 5.293324 TGTGTACGGTAGATCATCAAATTGC 59.707 40.000 0.00 0.00 0.00 3.56
1825 1880 5.293324 GTGTACGGTAGATCATCAAATTGCA 59.707 40.000 0.00 0.00 0.00 4.08
1826 1881 5.877564 TGTACGGTAGATCATCAAATTGCAA 59.122 36.000 0.00 0.00 0.00 4.08
1827 1882 5.895636 ACGGTAGATCATCAAATTGCAAA 57.104 34.783 1.71 0.00 0.00 3.68
1828 1883 6.455360 ACGGTAGATCATCAAATTGCAAAT 57.545 33.333 1.71 0.00 0.00 2.32
1829 1884 6.866480 ACGGTAGATCATCAAATTGCAAATT 58.134 32.000 1.71 0.00 0.00 1.82
1830 1885 7.995289 ACGGTAGATCATCAAATTGCAAATTA 58.005 30.769 1.71 0.00 0.00 1.40
1831 1886 8.465999 ACGGTAGATCATCAAATTGCAAATTAA 58.534 29.630 1.71 0.00 0.00 1.40
1832 1887 9.467258 CGGTAGATCATCAAATTGCAAATTAAT 57.533 29.630 1.71 0.00 0.00 1.40
1896 1951 9.863845 AGAAAAGTTAGAGTATTGTAGCTTCTC 57.136 33.333 0.00 0.00 0.00 2.87
1897 1952 9.863845 GAAAAGTTAGAGTATTGTAGCTTCTCT 57.136 33.333 0.00 0.00 38.69 3.10
1905 1960 8.417884 AGAGTATTGTAGCTTCTCTAACATTCC 58.582 37.037 0.00 0.00 34.34 3.01
1911 1966 8.362464 TGTAGCTTCTCTAACATTCCTTCTTA 57.638 34.615 0.00 0.00 0.00 2.10
1914 1969 8.729805 AGCTTCTCTAACATTCCTTCTTAATG 57.270 34.615 0.00 0.00 39.68 1.90
1915 1970 8.325046 AGCTTCTCTAACATTCCTTCTTAATGT 58.675 33.333 0.00 0.00 46.77 2.71
1925 1980 8.997734 ACATTCCTTCTTAATGTTAGAGGATCT 58.002 33.333 0.00 0.00 43.31 2.75
1926 1981 9.270640 CATTCCTTCTTAATGTTAGAGGATCTG 57.729 37.037 0.00 0.00 36.47 2.90
1941 1996 2.743928 CTGGTTCCCAGTCGCTGC 60.744 66.667 1.99 0.00 45.82 5.25
1942 1997 4.329545 TGGTTCCCAGTCGCTGCC 62.330 66.667 0.00 0.00 0.00 4.85
1948 2003 4.351054 CCAGTCGCTGCCCCCTTT 62.351 66.667 0.00 0.00 0.00 3.11
1949 2004 3.058160 CAGTCGCTGCCCCCTTTG 61.058 66.667 0.00 0.00 0.00 2.77
1950 2005 4.351054 AGTCGCTGCCCCCTTTGG 62.351 66.667 0.00 0.00 0.00 3.28
1951 2006 4.344865 GTCGCTGCCCCCTTTGGA 62.345 66.667 0.00 0.00 35.39 3.53
1952 2007 3.575247 TCGCTGCCCCCTTTGGAA 61.575 61.111 0.00 0.00 35.39 3.53
1953 2008 2.362889 CGCTGCCCCCTTTGGAAT 60.363 61.111 0.00 0.00 35.39 3.01
1954 2009 1.077068 CGCTGCCCCCTTTGGAATA 60.077 57.895 0.00 0.00 35.39 1.75
1955 2010 0.468029 CGCTGCCCCCTTTGGAATAT 60.468 55.000 0.00 0.00 35.39 1.28
1956 2011 1.043022 GCTGCCCCCTTTGGAATATG 58.957 55.000 0.00 0.00 35.39 1.78
1957 2012 1.043022 CTGCCCCCTTTGGAATATGC 58.957 55.000 0.00 0.00 35.39 3.14
1958 2013 0.636101 TGCCCCCTTTGGAATATGCT 59.364 50.000 0.00 0.00 35.39 3.79
1959 2014 1.043022 GCCCCCTTTGGAATATGCTG 58.957 55.000 0.00 0.00 35.39 4.41
1960 2015 1.708341 CCCCCTTTGGAATATGCTGG 58.292 55.000 0.00 0.00 35.39 4.85
1961 2016 1.043022 CCCCTTTGGAATATGCTGGC 58.957 55.000 0.00 0.00 35.39 4.85
1962 2017 0.670162 CCCTTTGGAATATGCTGGCG 59.330 55.000 0.00 0.00 0.00 5.69
1963 2018 1.392589 CCTTTGGAATATGCTGGCGT 58.607 50.000 0.00 0.00 0.00 5.68
1964 2019 1.750778 CCTTTGGAATATGCTGGCGTT 59.249 47.619 0.00 0.00 0.00 4.84
1965 2020 2.166254 CCTTTGGAATATGCTGGCGTTT 59.834 45.455 0.00 0.00 0.00 3.60
1966 2021 3.368323 CCTTTGGAATATGCTGGCGTTTT 60.368 43.478 0.00 0.00 0.00 2.43
1967 2022 2.937469 TGGAATATGCTGGCGTTTTG 57.063 45.000 0.00 0.00 0.00 2.44
1968 2023 2.441410 TGGAATATGCTGGCGTTTTGA 58.559 42.857 0.00 0.00 0.00 2.69
1969 2024 2.163412 TGGAATATGCTGGCGTTTTGAC 59.837 45.455 0.00 0.00 0.00 3.18
1970 2025 2.440501 GAATATGCTGGCGTTTTGACG 58.559 47.619 0.00 0.00 0.00 4.35
1971 2026 0.732571 ATATGCTGGCGTTTTGACGG 59.267 50.000 0.93 0.00 33.77 4.79
1977 2032 2.725815 GCGTTTTGACGGCAGCAC 60.726 61.111 0.00 0.00 0.00 4.40
1978 2033 2.712539 CGTTTTGACGGCAGCACA 59.287 55.556 0.00 0.00 0.00 4.57
1979 2034 1.369209 CGTTTTGACGGCAGCACAG 60.369 57.895 0.00 0.00 0.00 3.66
1980 2035 1.008538 GTTTTGACGGCAGCACAGG 60.009 57.895 0.00 0.00 0.00 4.00
1981 2036 1.453015 TTTTGACGGCAGCACAGGT 60.453 52.632 0.00 0.00 0.00 4.00
1982 2037 0.179043 TTTTGACGGCAGCACAGGTA 60.179 50.000 0.00 0.00 0.00 3.08
1983 2038 0.036164 TTTGACGGCAGCACAGGTAT 59.964 50.000 0.00 0.00 0.00 2.73
1984 2039 0.391130 TTGACGGCAGCACAGGTATC 60.391 55.000 0.00 0.00 0.00 2.24
1985 2040 1.218047 GACGGCAGCACAGGTATCA 59.782 57.895 0.00 0.00 0.00 2.15
1986 2041 0.179073 GACGGCAGCACAGGTATCAT 60.179 55.000 0.00 0.00 0.00 2.45
1987 2042 0.179073 ACGGCAGCACAGGTATCATC 60.179 55.000 0.00 0.00 0.00 2.92
1988 2043 0.105593 CGGCAGCACAGGTATCATCT 59.894 55.000 0.00 0.00 0.00 2.90
1989 2044 1.590932 GGCAGCACAGGTATCATCTG 58.409 55.000 0.00 0.00 38.16 2.90
1990 2045 0.942962 GCAGCACAGGTATCATCTGC 59.057 55.000 0.00 0.00 39.82 4.26
2005 2060 2.045634 TGCCCTGCAGATGCTGTC 60.046 61.111 17.39 1.12 42.66 3.51
2007 2062 1.266867 TGCCCTGCAGATGCTGTCTA 61.267 55.000 17.39 0.00 42.66 2.59
2008 2063 0.532417 GCCCTGCAGATGCTGTCTAG 60.532 60.000 17.39 0.00 42.66 2.43
2009 2064 0.106335 CCCTGCAGATGCTGTCTAGG 59.894 60.000 17.39 0.00 42.66 3.02
2010 2065 0.829333 CCTGCAGATGCTGTCTAGGT 59.171 55.000 17.39 0.00 42.66 3.08
2011 2066 2.034878 CCTGCAGATGCTGTCTAGGTA 58.965 52.381 17.39 0.00 42.66 3.08
2013 2068 3.829026 CCTGCAGATGCTGTCTAGGTATA 59.171 47.826 17.39 0.00 42.66 1.47
2015 2070 5.046735 CCTGCAGATGCTGTCTAGGTATAAT 60.047 44.000 17.39 0.00 42.66 1.28
2016 2071 6.030548 TGCAGATGCTGTCTAGGTATAATC 57.969 41.667 6.35 0.00 42.66 1.75
2017 2072 5.047021 TGCAGATGCTGTCTAGGTATAATCC 60.047 44.000 6.35 0.00 42.66 3.01
2018 2073 5.186797 GCAGATGCTGTCTAGGTATAATCCT 59.813 44.000 0.00 0.00 38.58 3.24
2020 2075 7.095910 CAGATGCTGTCTAGGTATAATCCTTG 58.904 42.308 0.00 0.00 38.86 3.61
2029 2608 9.444600 GTCTAGGTATAATCCTTGTCAAACAAA 57.555 33.333 0.00 0.00 37.69 2.83
2030 2609 9.444600 TCTAGGTATAATCCTTGTCAAACAAAC 57.555 33.333 0.00 0.00 37.69 2.93
2035 2614 9.485591 GTATAATCCTTGTCAAACAAACATACG 57.514 33.333 0.00 0.00 37.69 3.06
2037 2616 5.821516 TCCTTGTCAAACAAACATACGTT 57.178 34.783 0.00 0.00 37.69 3.99
2038 2617 6.197364 TCCTTGTCAAACAAACATACGTTT 57.803 33.333 0.00 0.00 46.38 3.60
2053 2632 9.575783 AAACATACGTTTGACTTTACACAAATT 57.424 25.926 13.16 0.00 43.75 1.82
2063 2778 8.795786 TGACTTTACACAAATTAATGCACTTC 57.204 30.769 0.00 0.00 0.00 3.01
2069 2784 7.642071 ACACAAATTAATGCACTTCATGTTC 57.358 32.000 0.00 0.00 35.13 3.18
2071 2786 8.575589 ACACAAATTAATGCACTTCATGTTCTA 58.424 29.630 0.00 0.00 35.13 2.10
2072 2787 8.853345 CACAAATTAATGCACTTCATGTTCTAC 58.147 33.333 0.00 0.00 35.13 2.59
2073 2788 8.575589 ACAAATTAATGCACTTCATGTTCTACA 58.424 29.630 0.00 0.00 35.13 2.74
2075 2790 8.970691 AATTAATGCACTTCATGTTCTACAAC 57.029 30.769 0.00 0.00 35.13 3.32
2076 2791 4.668576 ATGCACTTCATGTTCTACAACG 57.331 40.909 0.00 0.00 34.95 4.10
2077 2792 2.805671 TGCACTTCATGTTCTACAACGG 59.194 45.455 0.00 0.00 34.95 4.44
2078 2793 3.064207 GCACTTCATGTTCTACAACGGA 58.936 45.455 0.00 0.00 34.95 4.69
2079 2794 3.123621 GCACTTCATGTTCTACAACGGAG 59.876 47.826 0.00 0.00 34.95 4.63
2080 2795 3.679980 CACTTCATGTTCTACAACGGAGG 59.320 47.826 0.00 0.00 34.95 4.30
2081 2796 3.323979 ACTTCATGTTCTACAACGGAGGT 59.676 43.478 0.00 0.00 34.95 3.85
2082 2797 4.525487 ACTTCATGTTCTACAACGGAGGTA 59.475 41.667 0.00 0.00 34.95 3.08
2083 2798 4.713824 TCATGTTCTACAACGGAGGTAG 57.286 45.455 0.00 4.58 39.63 3.18
2084 2799 4.084287 TCATGTTCTACAACGGAGGTAGT 58.916 43.478 9.31 0.00 39.36 2.73
2085 2800 5.255687 TCATGTTCTACAACGGAGGTAGTA 58.744 41.667 9.31 0.00 39.36 1.82
2086 2801 5.889853 TCATGTTCTACAACGGAGGTAGTAT 59.110 40.000 9.31 2.93 39.36 2.12
2087 2802 5.571784 TGTTCTACAACGGAGGTAGTATG 57.428 43.478 9.31 0.00 39.36 2.39
2088 2803 5.255687 TGTTCTACAACGGAGGTAGTATGA 58.744 41.667 9.31 0.00 39.36 2.15
2089 2804 5.889853 TGTTCTACAACGGAGGTAGTATGAT 59.110 40.000 9.31 0.00 39.36 2.45
2090 2805 6.379133 TGTTCTACAACGGAGGTAGTATGATT 59.621 38.462 9.31 0.00 39.36 2.57
2091 2806 6.387041 TCTACAACGGAGGTAGTATGATTG 57.613 41.667 9.31 0.00 39.36 2.67
2092 2807 6.124340 TCTACAACGGAGGTAGTATGATTGA 58.876 40.000 9.31 0.00 39.36 2.57
2093 2808 5.263968 ACAACGGAGGTAGTATGATTGAG 57.736 43.478 0.00 0.00 0.00 3.02
2094 2809 4.051922 CAACGGAGGTAGTATGATTGAGC 58.948 47.826 0.00 0.00 0.00 4.26
2095 2810 2.293677 ACGGAGGTAGTATGATTGAGCG 59.706 50.000 0.00 0.00 0.00 5.03
2096 2811 2.293677 CGGAGGTAGTATGATTGAGCGT 59.706 50.000 0.00 0.00 0.00 5.07
2097 2812 3.501062 CGGAGGTAGTATGATTGAGCGTA 59.499 47.826 0.00 0.00 0.00 4.42
2098 2813 4.613167 CGGAGGTAGTATGATTGAGCGTAC 60.613 50.000 0.00 0.00 0.00 3.67
2099 2814 4.277672 GGAGGTAGTATGATTGAGCGTACA 59.722 45.833 1.98 0.00 33.66 2.90
2100 2815 5.221185 GGAGGTAGTATGATTGAGCGTACAA 60.221 44.000 1.98 0.00 33.66 2.41
2101 2816 5.833082 AGGTAGTATGATTGAGCGTACAAG 58.167 41.667 1.98 0.00 33.66 3.16
2102 2817 5.593095 AGGTAGTATGATTGAGCGTACAAGA 59.407 40.000 1.98 0.00 33.66 3.02
2103 2818 6.265649 AGGTAGTATGATTGAGCGTACAAGAT 59.734 38.462 1.98 0.00 33.66 2.40
2104 2819 6.924060 GGTAGTATGATTGAGCGTACAAGATT 59.076 38.462 1.98 0.00 33.66 2.40
2105 2820 8.080417 GGTAGTATGATTGAGCGTACAAGATTA 58.920 37.037 1.98 0.00 33.66 1.75
2106 2821 9.627395 GTAGTATGATTGAGCGTACAAGATTAT 57.373 33.333 1.98 0.00 33.66 1.28
2113 2828 9.813080 GATTGAGCGTACAAGATTATTAATTCC 57.187 33.333 0.00 0.00 33.22 3.01
2114 2829 8.958119 TTGAGCGTACAAGATTATTAATTCCT 57.042 30.769 0.00 0.00 0.00 3.36
2115 2830 8.958119 TGAGCGTACAAGATTATTAATTCCTT 57.042 30.769 0.00 0.00 0.00 3.36
2118 2833 9.826574 AGCGTACAAGATTATTAATTCCTTACA 57.173 29.630 0.00 0.00 0.00 2.41
2136 2851 9.550406 TTCCTTACATAATATAAACGACTTGGG 57.450 33.333 0.00 0.00 0.00 4.12
2137 2852 8.707449 TCCTTACATAATATAAACGACTTGGGT 58.293 33.333 0.00 0.00 0.00 4.51
2138 2853 8.770828 CCTTACATAATATAAACGACTTGGGTG 58.229 37.037 0.00 0.00 0.00 4.61
2139 2854 9.537192 CTTACATAATATAAACGACTTGGGTGA 57.463 33.333 0.00 0.00 0.00 4.02
2140 2855 9.887629 TTACATAATATAAACGACTTGGGTGAA 57.112 29.630 0.00 0.00 0.00 3.18
2141 2856 8.974060 ACATAATATAAACGACTTGGGTGAAT 57.026 30.769 0.00 0.00 0.00 2.57
2148 2863 5.385509 AACGACTTGGGTGAATAAAATGG 57.614 39.130 0.00 0.00 0.00 3.16
2149 2864 3.761752 ACGACTTGGGTGAATAAAATGGG 59.238 43.478 0.00 0.00 0.00 4.00
2150 2865 3.130340 CGACTTGGGTGAATAAAATGGGG 59.870 47.826 0.00 0.00 0.00 4.96
2151 2866 4.349365 GACTTGGGTGAATAAAATGGGGA 58.651 43.478 0.00 0.00 0.00 4.81
2152 2867 4.093743 ACTTGGGTGAATAAAATGGGGAC 58.906 43.478 0.00 0.00 0.00 4.46
2174 2889 6.810888 ACATCAATTGTCAAAAGTCGTTTG 57.189 33.333 5.13 5.01 46.86 2.93
2194 2909 5.490139 TTGAATTCCGAGCTTGATCATTC 57.510 39.130 1.22 7.52 0.00 2.67
2196 2911 5.917462 TGAATTCCGAGCTTGATCATTCTA 58.083 37.500 1.22 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.614057 CAAACTAGACATGCCGGGAATC 59.386 50.000 0.00 0.00 0.00 2.52
80 81 2.030805 CACAAAACTAGGCACTGGAAGC 60.031 50.000 0.00 0.00 40.33 3.86
82 83 1.953686 GCACAAAACTAGGCACTGGAA 59.046 47.619 0.00 0.00 40.33 3.53
84 85 0.598065 GGCACAAAACTAGGCACTGG 59.402 55.000 0.00 0.00 44.86 4.00
85 86 0.238289 CGGCACAAAACTAGGCACTG 59.762 55.000 0.00 0.00 41.52 3.66
102 103 3.393089 AAGAGTAGCTGCCAATATCGG 57.607 47.619 0.00 0.00 0.00 4.18
108 109 4.202060 CGAGATCTAAAGAGTAGCTGCCAA 60.202 45.833 0.00 0.00 0.00 4.52
123 124 3.444034 CCCGAGGCATATTTCGAGATCTA 59.556 47.826 0.00 0.00 39.06 1.98
131 132 0.182775 ACCACCCCGAGGCATATTTC 59.817 55.000 0.00 0.00 36.11 2.17
135 136 0.912487 AAGAACCACCCCGAGGCATA 60.912 55.000 0.00 0.00 36.11 3.14
148 149 7.617041 ACTATACAAATCTTCAGCAAGAACC 57.383 36.000 0.00 0.00 42.14 3.62
183 188 4.497291 TTACACAGAATAAGGCCCGATT 57.503 40.909 0.00 0.00 0.00 3.34
208 213 6.980397 CCAAAGATGGCTCCAACAATAATTAC 59.020 38.462 0.00 0.00 40.58 1.89
254 259 1.068885 AGTCGAGTTCAAGAGACGCTG 60.069 52.381 0.00 0.00 38.53 5.18
257 262 2.287668 ACCAAGTCGAGTTCAAGAGACG 60.288 50.000 1.51 0.00 38.53 4.18
260 265 1.795286 GCACCAAGTCGAGTTCAAGAG 59.205 52.381 1.51 0.00 0.00 2.85
264 269 4.771127 GGCACCAAGTCGAGTTCA 57.229 55.556 1.51 0.00 0.00 3.18
325 332 6.876257 ACTCCAATTTCTGCACTTTACTCTAG 59.124 38.462 0.00 0.00 0.00 2.43
346 353 1.478916 GACCTGAGAACTAGGCACTCC 59.521 57.143 0.00 0.00 41.75 3.85
403 410 3.873361 CGCATATGTTCACTGGTTCAGAT 59.127 43.478 4.29 0.00 35.18 2.90
411 418 4.418013 TTTCAACCGCATATGTTCACTG 57.582 40.909 4.29 0.00 0.00 3.66
432 439 7.907214 AGCTAACTTTCAGAAACGTATCATT 57.093 32.000 0.00 0.00 0.00 2.57
447 454 6.150140 CCTCTGTTTAGATGCAAGCTAACTTT 59.850 38.462 10.80 0.00 45.62 2.66
454 461 2.086869 TGCCTCTGTTTAGATGCAAGC 58.913 47.619 5.06 0.00 46.86 4.01
605 612 4.877823 TGATGTATTGCAGATTGAGTGTCC 59.122 41.667 0.00 0.00 0.00 4.02
615 622 4.712051 ATAAGGCCTGATGTATTGCAGA 57.288 40.909 5.69 0.00 34.06 4.26
618 625 8.567285 ACTTATAATAAGGCCTGATGTATTGC 57.433 34.615 5.69 0.00 0.00 3.56
680 687 7.296628 AGAATATAATGACTCAGTCAGGTCC 57.703 40.000 14.19 0.00 46.04 4.46
698 708 9.823647 CTGGACACATACAAGAAACTAGAATAT 57.176 33.333 0.00 0.00 0.00 1.28
699 709 7.764443 GCTGGACACATACAAGAAACTAGAATA 59.236 37.037 0.00 0.00 0.00 1.75
933 943 7.206981 ACCATCAGAAACAACTAACATTCAG 57.793 36.000 0.00 0.00 0.00 3.02
1005 1021 3.782244 GCGAGCTTCACCTGCGTG 61.782 66.667 0.00 0.00 41.72 5.34
1026 1042 1.074775 GCCCATCACCTTGACCACA 59.925 57.895 0.00 0.00 0.00 4.17
1146 1162 1.524482 GAGCAGGGTGAGGATGTCC 59.476 63.158 0.00 0.00 0.00 4.02
1228 1244 2.932614 CAGTACAGCATTCTTCTTCCCG 59.067 50.000 0.00 0.00 0.00 5.14
1277 1299 2.780010 ACCTCCACATAGCTAGGCAAAT 59.220 45.455 5.07 0.00 31.98 2.32
1308 1330 7.096065 GCACTTTAATTTAGGCAACAGAACAAG 60.096 37.037 0.00 0.00 41.41 3.16
1443 1492 1.745232 ACACGCAAAGAACCAGAACA 58.255 45.000 0.00 0.00 0.00 3.18
1488 1539 2.106684 GTCCCAACTCTCCTGAAACCTT 59.893 50.000 0.00 0.00 0.00 3.50
1536 1591 1.048724 TCGGATGGCTCTTAGTGGGG 61.049 60.000 0.00 0.00 0.00 4.96
1537 1592 0.830648 TTCGGATGGCTCTTAGTGGG 59.169 55.000 0.00 0.00 0.00 4.61
1542 1597 0.744874 CGGAGTTCGGATGGCTCTTA 59.255 55.000 0.00 0.00 34.75 2.10
1543 1598 1.517832 CGGAGTTCGGATGGCTCTT 59.482 57.895 0.00 0.00 34.75 2.85
1554 1609 2.222027 CATATTCAAGGGGCGGAGTTC 58.778 52.381 0.00 0.00 0.00 3.01
1555 1610 1.564348 ACATATTCAAGGGGCGGAGTT 59.436 47.619 0.00 0.00 0.00 3.01
1560 1615 0.381801 GTGCACATATTCAAGGGGCG 59.618 55.000 13.17 0.00 0.00 6.13
1567 1622 4.009675 GTCTTCAAGGGTGCACATATTCA 58.990 43.478 20.43 0.00 0.00 2.57
1574 1629 1.172812 GGTGGTCTTCAAGGGTGCAC 61.173 60.000 8.80 8.80 0.00 4.57
1577 1632 0.474184 ACTGGTGGTCTTCAAGGGTG 59.526 55.000 0.00 0.00 0.00 4.61
1602 1657 3.134081 TCAATGTTAGAGGATCCGGTTCC 59.866 47.826 22.05 22.05 33.66 3.62
1603 1658 4.099573 TCTCAATGTTAGAGGATCCGGTTC 59.900 45.833 5.98 1.67 33.66 3.62
1604 1659 4.030913 TCTCAATGTTAGAGGATCCGGTT 58.969 43.478 5.98 0.00 33.66 4.44
1605 1660 3.643237 TCTCAATGTTAGAGGATCCGGT 58.357 45.455 5.98 0.00 33.66 5.28
1606 1661 4.502259 CCTTCTCAATGTTAGAGGATCCGG 60.502 50.000 5.98 0.00 33.66 5.14
1607 1662 4.342378 TCCTTCTCAATGTTAGAGGATCCG 59.658 45.833 5.98 0.00 33.66 4.18
1608 1663 5.878406 TCCTTCTCAATGTTAGAGGATCC 57.122 43.478 2.48 2.48 33.66 3.36
1609 1664 7.278875 ACATTCCTTCTCAATGTTAGAGGATC 58.721 38.462 0.00 0.00 40.83 3.36
1610 1665 7.092712 TGACATTCCTTCTCAATGTTAGAGGAT 60.093 37.037 0.00 0.00 43.16 3.24
1611 1666 6.213397 TGACATTCCTTCTCAATGTTAGAGGA 59.787 38.462 0.00 0.00 43.16 3.71
1612 1667 6.314896 GTGACATTCCTTCTCAATGTTAGAGG 59.685 42.308 0.00 0.00 43.16 3.69
1613 1668 6.314896 GGTGACATTCCTTCTCAATGTTAGAG 59.685 42.308 0.00 0.00 43.16 2.43
1614 1669 6.173339 GGTGACATTCCTTCTCAATGTTAGA 58.827 40.000 0.00 0.00 43.16 2.10
1615 1670 5.063944 CGGTGACATTCCTTCTCAATGTTAG 59.936 44.000 0.00 0.00 43.16 2.34
1616 1671 4.935205 CGGTGACATTCCTTCTCAATGTTA 59.065 41.667 0.00 0.00 43.16 2.41
1617 1672 3.753272 CGGTGACATTCCTTCTCAATGTT 59.247 43.478 0.00 0.00 43.16 2.71
1618 1673 3.244561 ACGGTGACATTCCTTCTCAATGT 60.245 43.478 0.00 0.00 45.28 2.71
1619 1674 3.125829 CACGGTGACATTCCTTCTCAATG 59.874 47.826 0.74 0.00 37.29 2.82
1620 1675 3.338249 CACGGTGACATTCCTTCTCAAT 58.662 45.455 0.74 0.00 0.00 2.57
1621 1676 2.766313 CACGGTGACATTCCTTCTCAA 58.234 47.619 0.74 0.00 0.00 3.02
1622 1677 1.608025 GCACGGTGACATTCCTTCTCA 60.608 52.381 13.29 0.00 0.00 3.27
1623 1678 1.079503 GCACGGTGACATTCCTTCTC 58.920 55.000 13.29 0.00 0.00 2.87
1624 1679 0.687354 AGCACGGTGACATTCCTTCT 59.313 50.000 13.29 0.00 0.00 2.85
1625 1680 2.000447 GTAGCACGGTGACATTCCTTC 59.000 52.381 13.29 0.00 0.00 3.46
1626 1681 1.346395 TGTAGCACGGTGACATTCCTT 59.654 47.619 13.29 0.00 0.00 3.36
1627 1682 0.973632 TGTAGCACGGTGACATTCCT 59.026 50.000 13.29 0.48 0.00 3.36
1628 1683 1.803334 TTGTAGCACGGTGACATTCC 58.197 50.000 13.29 0.00 0.00 3.01
1629 1684 2.742053 ACATTGTAGCACGGTGACATTC 59.258 45.455 13.29 0.00 0.00 2.67
1630 1685 2.778299 ACATTGTAGCACGGTGACATT 58.222 42.857 13.29 2.17 0.00 2.71
1631 1686 2.472695 ACATTGTAGCACGGTGACAT 57.527 45.000 13.29 0.00 0.00 3.06
1632 1687 2.248280 AACATTGTAGCACGGTGACA 57.752 45.000 13.29 5.39 0.00 3.58
1633 1688 2.671396 CCTAACATTGTAGCACGGTGAC 59.329 50.000 13.29 2.45 0.00 3.67
1634 1689 2.933492 GCCTAACATTGTAGCACGGTGA 60.933 50.000 13.29 0.00 0.00 4.02
1635 1690 1.396996 GCCTAACATTGTAGCACGGTG 59.603 52.381 3.15 3.15 0.00 4.94
1636 1691 1.677820 GGCCTAACATTGTAGCACGGT 60.678 52.381 0.00 0.00 0.00 4.83
1637 1692 1.014352 GGCCTAACATTGTAGCACGG 58.986 55.000 0.00 0.00 0.00 4.94
1638 1693 1.665679 CTGGCCTAACATTGTAGCACG 59.334 52.381 3.32 0.00 0.00 5.34
1639 1694 2.420022 CACTGGCCTAACATTGTAGCAC 59.580 50.000 3.32 0.00 0.00 4.40
1640 1695 2.039746 ACACTGGCCTAACATTGTAGCA 59.960 45.455 3.32 0.00 33.23 3.49
1641 1696 2.711542 ACACTGGCCTAACATTGTAGC 58.288 47.619 3.32 0.00 33.23 3.58
1642 1697 6.608610 GTTTTACACTGGCCTAACATTGTAG 58.391 40.000 3.32 0.00 37.65 2.74
1643 1698 5.179742 CGTTTTACACTGGCCTAACATTGTA 59.820 40.000 3.32 0.00 36.02 2.41
1644 1699 4.023536 CGTTTTACACTGGCCTAACATTGT 60.024 41.667 3.32 0.00 37.84 2.71
1645 1700 4.214545 TCGTTTTACACTGGCCTAACATTG 59.785 41.667 3.32 0.00 0.00 2.82
1646 1701 4.391155 TCGTTTTACACTGGCCTAACATT 58.609 39.130 3.32 0.00 0.00 2.71
1647 1702 4.010667 TCGTTTTACACTGGCCTAACAT 57.989 40.909 3.32 0.00 0.00 2.71
1648 1703 3.472283 TCGTTTTACACTGGCCTAACA 57.528 42.857 3.32 0.00 0.00 2.41
1649 1704 4.060205 TCTTCGTTTTACACTGGCCTAAC 58.940 43.478 3.32 0.00 0.00 2.34
1650 1705 4.339872 TCTTCGTTTTACACTGGCCTAA 57.660 40.909 3.32 0.00 0.00 2.69
1651 1706 4.039488 TCTTCTTCGTTTTACACTGGCCTA 59.961 41.667 3.32 0.00 0.00 3.93
1652 1707 2.922740 TCTTCGTTTTACACTGGCCT 57.077 45.000 3.32 0.00 0.00 5.19
1653 1708 3.135994 TCTTCTTCGTTTTACACTGGCC 58.864 45.455 0.00 0.00 0.00 5.36
1654 1709 4.806342 TTCTTCTTCGTTTTACACTGGC 57.194 40.909 0.00 0.00 0.00 4.85
1655 1710 6.782150 ACTTTTCTTCTTCGTTTTACACTGG 58.218 36.000 0.00 0.00 0.00 4.00
1656 1711 9.422196 CTAACTTTTCTTCTTCGTTTTACACTG 57.578 33.333 0.00 0.00 0.00 3.66
1657 1712 9.374838 TCTAACTTTTCTTCTTCGTTTTACACT 57.625 29.630 0.00 0.00 0.00 3.55
1658 1713 9.634300 CTCTAACTTTTCTTCTTCGTTTTACAC 57.366 33.333 0.00 0.00 0.00 2.90
1659 1714 9.590451 TCTCTAACTTTTCTTCTTCGTTTTACA 57.410 29.630 0.00 0.00 0.00 2.41
1660 1715 9.846738 GTCTCTAACTTTTCTTCTTCGTTTTAC 57.153 33.333 0.00 0.00 0.00 2.01
1661 1716 9.813446 AGTCTCTAACTTTTCTTCTTCGTTTTA 57.187 29.630 0.00 0.00 33.03 1.52
1662 1717 8.604890 CAGTCTCTAACTTTTCTTCTTCGTTTT 58.395 33.333 0.00 0.00 35.45 2.43
1663 1718 7.764901 ACAGTCTCTAACTTTTCTTCTTCGTTT 59.235 33.333 0.00 0.00 35.45 3.60
1664 1719 7.266400 ACAGTCTCTAACTTTTCTTCTTCGTT 58.734 34.615 0.00 0.00 35.45 3.85
1665 1720 6.807789 ACAGTCTCTAACTTTTCTTCTTCGT 58.192 36.000 0.00 0.00 35.45 3.85
1666 1721 7.701809 AACAGTCTCTAACTTTTCTTCTTCG 57.298 36.000 0.00 0.00 35.45 3.79
1667 1722 9.752961 ACTAACAGTCTCTAACTTTTCTTCTTC 57.247 33.333 0.00 0.00 35.45 2.87
1704 1759 9.275398 CAGTAAATACCAACACTAAACAACCTA 57.725 33.333 0.00 0.00 0.00 3.08
1705 1760 7.776500 ACAGTAAATACCAACACTAAACAACCT 59.224 33.333 0.00 0.00 0.00 3.50
1706 1761 7.933396 ACAGTAAATACCAACACTAAACAACC 58.067 34.615 0.00 0.00 0.00 3.77
1792 1847 9.074576 TGATGATCTACCGTACACATTTATAGT 57.925 33.333 0.00 0.00 0.00 2.12
1793 1848 9.908152 TTGATGATCTACCGTACACATTTATAG 57.092 33.333 0.00 0.00 0.00 1.31
1795 1850 9.778741 ATTTGATGATCTACCGTACACATTTAT 57.221 29.630 0.00 0.00 0.00 1.40
1796 1851 9.607988 AATTTGATGATCTACCGTACACATTTA 57.392 29.630 0.00 0.00 0.00 1.40
1797 1852 8.397906 CAATTTGATGATCTACCGTACACATTT 58.602 33.333 0.00 0.00 0.00 2.32
1798 1853 7.467267 GCAATTTGATGATCTACCGTACACATT 60.467 37.037 0.00 0.00 0.00 2.71
1799 1854 6.017934 GCAATTTGATGATCTACCGTACACAT 60.018 38.462 0.00 0.00 0.00 3.21
1800 1855 5.293324 GCAATTTGATGATCTACCGTACACA 59.707 40.000 0.00 0.00 0.00 3.72
1801 1856 5.293324 TGCAATTTGATGATCTACCGTACAC 59.707 40.000 0.00 0.00 0.00 2.90
1802 1857 5.423886 TGCAATTTGATGATCTACCGTACA 58.576 37.500 0.00 0.00 0.00 2.90
1803 1858 5.984233 TGCAATTTGATGATCTACCGTAC 57.016 39.130 0.00 0.00 0.00 3.67
1804 1859 6.993786 TTTGCAATTTGATGATCTACCGTA 57.006 33.333 0.00 0.00 0.00 4.02
1805 1860 5.895636 TTTGCAATTTGATGATCTACCGT 57.104 34.783 0.00 0.00 0.00 4.83
1806 1861 8.854979 TTAATTTGCAATTTGATGATCTACCG 57.145 30.769 15.14 0.00 0.00 4.02
1870 1925 9.863845 GAGAAGCTACAATACTCTAACTTTTCT 57.136 33.333 0.00 0.00 0.00 2.52
1871 1926 9.863845 AGAGAAGCTACAATACTCTAACTTTTC 57.136 33.333 0.00 0.00 36.39 2.29
1879 1934 8.417884 GGAATGTTAGAGAAGCTACAATACTCT 58.582 37.037 0.00 0.00 40.37 3.24
1880 1935 8.417884 AGGAATGTTAGAGAAGCTACAATACTC 58.582 37.037 0.00 0.00 0.00 2.59
1881 1936 8.312669 AGGAATGTTAGAGAAGCTACAATACT 57.687 34.615 0.00 0.00 0.00 2.12
1882 1937 8.950208 AAGGAATGTTAGAGAAGCTACAATAC 57.050 34.615 0.00 0.00 0.00 1.89
1883 1938 8.982723 AGAAGGAATGTTAGAGAAGCTACAATA 58.017 33.333 0.00 0.00 0.00 1.90
1884 1939 7.856415 AGAAGGAATGTTAGAGAAGCTACAAT 58.144 34.615 0.00 0.00 0.00 2.71
1885 1940 7.246171 AGAAGGAATGTTAGAGAAGCTACAA 57.754 36.000 0.00 0.00 0.00 2.41
1886 1941 6.859112 AGAAGGAATGTTAGAGAAGCTACA 57.141 37.500 0.00 0.00 0.00 2.74
1887 1942 9.825109 ATTAAGAAGGAATGTTAGAGAAGCTAC 57.175 33.333 0.00 0.00 0.00 3.58
1888 1943 9.823647 CATTAAGAAGGAATGTTAGAGAAGCTA 57.176 33.333 0.00 0.00 31.00 3.32
1889 1944 8.325046 ACATTAAGAAGGAATGTTAGAGAAGCT 58.675 33.333 0.00 0.00 43.38 3.74
1890 1945 8.499403 ACATTAAGAAGGAATGTTAGAGAAGC 57.501 34.615 0.00 0.00 43.38 3.86
1899 1954 8.997734 AGATCCTCTAACATTAAGAAGGAATGT 58.002 33.333 0.00 0.00 46.89 2.71
1900 1955 9.270640 CAGATCCTCTAACATTAAGAAGGAATG 57.729 37.037 0.00 0.00 39.68 2.67
1905 1960 7.713073 GGAACCAGATCCTCTAACATTAAGAAG 59.287 40.741 0.00 0.00 36.50 2.85
1931 1986 4.351054 AAAGGGGGCAGCGACTGG 62.351 66.667 8.57 0.00 31.21 4.00
1932 1987 3.058160 CAAAGGGGGCAGCGACTG 61.058 66.667 2.92 2.92 34.12 3.51
1933 1988 4.351054 CCAAAGGGGGCAGCGACT 62.351 66.667 0.00 0.00 0.00 4.18
1934 1989 3.739589 TATTCCAAAGGGGGCAGCGAC 62.740 57.143 0.00 0.00 37.22 5.19
1935 1990 1.567208 TATTCCAAAGGGGGCAGCGA 61.567 55.000 0.00 0.00 37.22 4.93
1936 1991 0.468029 ATATTCCAAAGGGGGCAGCG 60.468 55.000 0.00 0.00 37.22 5.18
1937 1992 1.043022 CATATTCCAAAGGGGGCAGC 58.957 55.000 0.00 0.00 37.22 5.25
1938 1993 1.043022 GCATATTCCAAAGGGGGCAG 58.957 55.000 0.00 0.00 37.22 4.85
1939 1994 0.636101 AGCATATTCCAAAGGGGGCA 59.364 50.000 0.00 0.00 37.22 5.36
1940 1995 1.043022 CAGCATATTCCAAAGGGGGC 58.957 55.000 0.00 0.00 37.22 5.80
1941 1996 1.708341 CCAGCATATTCCAAAGGGGG 58.292 55.000 0.00 0.00 37.22 5.40
1942 1997 1.043022 GCCAGCATATTCCAAAGGGG 58.957 55.000 0.00 0.00 38.37 4.79
1943 1998 0.670162 CGCCAGCATATTCCAAAGGG 59.330 55.000 0.00 0.00 0.00 3.95
1944 1999 1.392589 ACGCCAGCATATTCCAAAGG 58.607 50.000 0.00 0.00 0.00 3.11
1945 2000 3.508744 AAACGCCAGCATATTCCAAAG 57.491 42.857 0.00 0.00 0.00 2.77
1946 2001 3.256879 TCAAAACGCCAGCATATTCCAAA 59.743 39.130 0.00 0.00 0.00 3.28
1947 2002 2.822561 TCAAAACGCCAGCATATTCCAA 59.177 40.909 0.00 0.00 0.00 3.53
1948 2003 2.163412 GTCAAAACGCCAGCATATTCCA 59.837 45.455 0.00 0.00 0.00 3.53
1949 2004 2.791158 CGTCAAAACGCCAGCATATTCC 60.791 50.000 0.00 0.00 42.82 3.01
1950 2005 2.440501 CGTCAAAACGCCAGCATATTC 58.559 47.619 0.00 0.00 42.82 1.75
1951 2006 2.542766 CGTCAAAACGCCAGCATATT 57.457 45.000 0.00 0.00 42.82 1.28
1956 2011 3.879351 CTGCCGTCAAAACGCCAGC 62.879 63.158 0.00 0.00 45.75 4.85
1957 2012 2.252260 CTGCCGTCAAAACGCCAG 59.748 61.111 0.00 0.00 46.21 4.85
1962 2017 1.008538 CCTGTGCTGCCGTCAAAAC 60.009 57.895 0.00 0.00 0.00 2.43
1963 2018 0.179043 TACCTGTGCTGCCGTCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
1964 2019 0.036164 ATACCTGTGCTGCCGTCAAA 59.964 50.000 0.00 0.00 0.00 2.69
1965 2020 0.391130 GATACCTGTGCTGCCGTCAA 60.391 55.000 0.00 0.00 0.00 3.18
1966 2021 1.218047 GATACCTGTGCTGCCGTCA 59.782 57.895 0.00 0.00 0.00 4.35
1967 2022 0.179073 ATGATACCTGTGCTGCCGTC 60.179 55.000 0.00 0.00 0.00 4.79
1968 2023 0.179073 GATGATACCTGTGCTGCCGT 60.179 55.000 0.00 0.00 0.00 5.68
1969 2024 0.105593 AGATGATACCTGTGCTGCCG 59.894 55.000 0.00 0.00 0.00 5.69
1970 2025 1.590932 CAGATGATACCTGTGCTGCC 58.409 55.000 0.00 0.00 0.00 4.85
1971 2026 0.942962 GCAGATGATACCTGTGCTGC 59.057 55.000 0.00 0.00 41.38 5.25
1972 2027 1.590932 GGCAGATGATACCTGTGCTG 58.409 55.000 0.00 0.00 34.46 4.41
1973 2028 0.471617 GGGCAGATGATACCTGTGCT 59.528 55.000 0.00 0.00 34.46 4.40
1974 2029 0.471617 AGGGCAGATGATACCTGTGC 59.528 55.000 0.00 0.00 34.29 4.57
1975 2030 2.251409 CAGGGCAGATGATACCTGTG 57.749 55.000 0.00 0.00 44.21 3.66
1978 2033 2.935348 TGCAGGGCAGATGATACCT 58.065 52.632 0.00 0.00 33.32 3.08
1988 2043 1.266867 TAGACAGCATCTGCAGGGCA 61.267 55.000 25.95 5.14 45.16 5.36
1989 2044 0.532417 CTAGACAGCATCTGCAGGGC 60.532 60.000 15.13 17.79 45.16 5.19
1990 2045 0.106335 CCTAGACAGCATCTGCAGGG 59.894 60.000 15.13 7.94 45.16 4.45
2005 2060 9.226606 TGTTTGTTTGACAAGGATTATACCTAG 57.773 33.333 0.00 0.00 39.53 3.02
2007 2062 8.650143 ATGTTTGTTTGACAAGGATTATACCT 57.350 30.769 0.00 0.00 39.53 3.08
2008 2063 9.783256 GTATGTTTGTTTGACAAGGATTATACC 57.217 33.333 0.00 0.00 39.53 2.73
2009 2064 9.485591 CGTATGTTTGTTTGACAAGGATTATAC 57.514 33.333 0.00 0.00 39.53 1.47
2010 2065 9.221933 ACGTATGTTTGTTTGACAAGGATTATA 57.778 29.630 0.00 0.00 39.53 0.98
2011 2066 8.106247 ACGTATGTTTGTTTGACAAGGATTAT 57.894 30.769 0.00 0.00 39.53 1.28
2013 2068 6.385649 ACGTATGTTTGTTTGACAAGGATT 57.614 33.333 0.00 0.00 39.53 3.01
2015 2070 5.821516 AACGTATGTTTGTTTGACAAGGA 57.178 34.783 0.00 0.00 39.53 3.36
2035 2614 9.030301 AGTGCATTAATTTGTGTAAAGTCAAAC 57.970 29.630 0.00 0.00 36.58 2.93
2037 2616 9.243637 GAAGTGCATTAATTTGTGTAAAGTCAA 57.756 29.630 0.00 0.00 0.00 3.18
2038 2617 8.409371 TGAAGTGCATTAATTTGTGTAAAGTCA 58.591 29.630 0.00 0.00 0.00 3.41
2040 2619 9.195411 CATGAAGTGCATTAATTTGTGTAAAGT 57.805 29.630 0.00 0.00 34.15 2.66
2042 2621 9.539825 AACATGAAGTGCATTAATTTGTGTAAA 57.460 25.926 0.00 0.00 34.15 2.01
2046 2625 7.878477 AGAACATGAAGTGCATTAATTTGTG 57.122 32.000 0.00 0.00 34.15 3.33
2048 2627 8.969121 TGTAGAACATGAAGTGCATTAATTTG 57.031 30.769 0.00 0.00 34.15 2.32
2050 2629 7.750458 CGTTGTAGAACATGAAGTGCATTAATT 59.250 33.333 0.00 0.00 34.15 1.40
2051 2630 7.243487 CGTTGTAGAACATGAAGTGCATTAAT 58.757 34.615 0.00 0.00 34.15 1.40
2052 2631 6.348132 CCGTTGTAGAACATGAAGTGCATTAA 60.348 38.462 0.00 0.00 34.15 1.40
2053 2632 5.121611 CCGTTGTAGAACATGAAGTGCATTA 59.878 40.000 0.00 0.00 34.15 1.90
2054 2633 4.083324 CCGTTGTAGAACATGAAGTGCATT 60.083 41.667 0.00 0.00 34.15 3.56
2055 2634 3.436704 CCGTTGTAGAACATGAAGTGCAT 59.563 43.478 0.00 0.00 37.85 3.96
2063 2778 4.451629 ACTACCTCCGTTGTAGAACATG 57.548 45.455 3.42 0.00 38.34 3.21
2069 2784 6.387041 TCAATCATACTACCTCCGTTGTAG 57.613 41.667 0.00 0.00 41.17 2.74
2071 2786 4.441634 GCTCAATCATACTACCTCCGTTGT 60.442 45.833 0.00 0.00 0.00 3.32
2072 2787 4.051922 GCTCAATCATACTACCTCCGTTG 58.948 47.826 0.00 0.00 0.00 4.10
2073 2788 3.243434 CGCTCAATCATACTACCTCCGTT 60.243 47.826 0.00 0.00 0.00 4.44
2075 2790 2.293677 ACGCTCAATCATACTACCTCCG 59.706 50.000 0.00 0.00 0.00 4.63
2076 2791 4.277672 TGTACGCTCAATCATACTACCTCC 59.722 45.833 0.00 0.00 0.00 4.30
2077 2792 5.434352 TGTACGCTCAATCATACTACCTC 57.566 43.478 0.00 0.00 0.00 3.85
2078 2793 5.593095 TCTTGTACGCTCAATCATACTACCT 59.407 40.000 0.00 0.00 0.00 3.08
2079 2794 5.828747 TCTTGTACGCTCAATCATACTACC 58.171 41.667 0.00 0.00 0.00 3.18
2080 2795 7.932120 AATCTTGTACGCTCAATCATACTAC 57.068 36.000 0.00 0.00 0.00 2.73
2087 2802 9.813080 GGAATTAATAATCTTGTACGCTCAATC 57.187 33.333 0.00 0.00 0.00 2.67
2088 2803 9.561069 AGGAATTAATAATCTTGTACGCTCAAT 57.439 29.630 0.00 0.00 0.00 2.57
2089 2804 8.958119 AGGAATTAATAATCTTGTACGCTCAA 57.042 30.769 0.00 0.00 0.00 3.02
2090 2805 8.958119 AAGGAATTAATAATCTTGTACGCTCA 57.042 30.769 0.00 0.00 0.00 4.26
2092 2807 9.826574 TGTAAGGAATTAATAATCTTGTACGCT 57.173 29.630 0.00 0.00 0.00 5.07
2110 2825 9.550406 CCCAAGTCGTTTATATTATGTAAGGAA 57.450 33.333 0.00 0.00 0.00 3.36
2111 2826 8.707449 ACCCAAGTCGTTTATATTATGTAAGGA 58.293 33.333 0.00 0.00 0.00 3.36
2112 2827 8.770828 CACCCAAGTCGTTTATATTATGTAAGG 58.229 37.037 0.00 0.00 0.00 2.69
2113 2828 9.537192 TCACCCAAGTCGTTTATATTATGTAAG 57.463 33.333 0.00 0.00 0.00 2.34
2114 2829 9.887629 TTCACCCAAGTCGTTTATATTATGTAA 57.112 29.630 0.00 0.00 0.00 2.41
2116 2831 8.974060 ATTCACCCAAGTCGTTTATATTATGT 57.026 30.769 0.00 0.00 0.00 2.29
2122 2837 8.679100 CCATTTTATTCACCCAAGTCGTTTATA 58.321 33.333 0.00 0.00 0.00 0.98
2123 2838 7.363443 CCCATTTTATTCACCCAAGTCGTTTAT 60.363 37.037 0.00 0.00 0.00 1.40
2124 2839 6.071840 CCCATTTTATTCACCCAAGTCGTTTA 60.072 38.462 0.00 0.00 0.00 2.01
2125 2840 5.279256 CCCATTTTATTCACCCAAGTCGTTT 60.279 40.000 0.00 0.00 0.00 3.60
2126 2841 4.219725 CCCATTTTATTCACCCAAGTCGTT 59.780 41.667 0.00 0.00 0.00 3.85
2127 2842 3.761752 CCCATTTTATTCACCCAAGTCGT 59.238 43.478 0.00 0.00 0.00 4.34
2128 2843 3.130340 CCCCATTTTATTCACCCAAGTCG 59.870 47.826 0.00 0.00 0.00 4.18
2129 2844 4.159693 GTCCCCATTTTATTCACCCAAGTC 59.840 45.833 0.00 0.00 0.00 3.01
2130 2845 4.093743 GTCCCCATTTTATTCACCCAAGT 58.906 43.478 0.00 0.00 0.00 3.16
2131 2846 4.093011 TGTCCCCATTTTATTCACCCAAG 58.907 43.478 0.00 0.00 0.00 3.61
2132 2847 4.133526 TGTCCCCATTTTATTCACCCAA 57.866 40.909 0.00 0.00 0.00 4.12
2133 2848 3.835478 TGTCCCCATTTTATTCACCCA 57.165 42.857 0.00 0.00 0.00 4.51
2134 2849 4.285863 TGATGTCCCCATTTTATTCACCC 58.714 43.478 0.00 0.00 0.00 4.61
2135 2850 5.930837 TTGATGTCCCCATTTTATTCACC 57.069 39.130 0.00 0.00 0.00 4.02
2136 2851 7.330262 ACAATTGATGTCCCCATTTTATTCAC 58.670 34.615 13.59 0.00 37.96 3.18
2137 2852 7.493499 ACAATTGATGTCCCCATTTTATTCA 57.507 32.000 13.59 0.00 37.96 2.57
2151 2866 6.810888 CAAACGACTTTTGACAATTGATGT 57.189 33.333 13.59 0.00 46.76 3.06
2162 2877 3.664025 GCTCGGAATTCAAACGACTTTTG 59.336 43.478 7.93 0.00 45.38 2.44
2163 2878 3.564225 AGCTCGGAATTCAAACGACTTTT 59.436 39.130 7.93 0.00 32.66 2.27
2164 2879 3.139077 AGCTCGGAATTCAAACGACTTT 58.861 40.909 7.93 0.00 32.66 2.66
2165 2880 2.767505 AGCTCGGAATTCAAACGACTT 58.232 42.857 7.93 0.00 32.66 3.01
2166 2881 2.457366 AGCTCGGAATTCAAACGACT 57.543 45.000 7.93 5.18 32.66 4.18
2167 2882 2.478894 TCAAGCTCGGAATTCAAACGAC 59.521 45.455 7.93 3.19 32.66 4.34
2168 2883 2.761559 TCAAGCTCGGAATTCAAACGA 58.238 42.857 7.93 6.46 35.14 3.85
2169 2884 3.125146 TGATCAAGCTCGGAATTCAAACG 59.875 43.478 7.93 1.92 0.00 3.60
2170 2885 4.685169 TGATCAAGCTCGGAATTCAAAC 57.315 40.909 7.93 0.00 0.00 2.93
2171 2886 5.649395 AGAATGATCAAGCTCGGAATTCAAA 59.351 36.000 7.93 0.00 0.00 2.69
2172 2887 5.188434 AGAATGATCAAGCTCGGAATTCAA 58.812 37.500 7.93 0.00 0.00 2.69
2173 2888 4.774124 AGAATGATCAAGCTCGGAATTCA 58.226 39.130 7.93 5.39 0.00 2.57
2174 2889 6.464895 CTAGAATGATCAAGCTCGGAATTC 57.535 41.667 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.