Multiple sequence alignment - TraesCS3A01G529800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G529800 chr3A 100.000 4690 0 0 1 4690 743132225 743127536 0.000000e+00 8661.0
1 TraesCS3A01G529800 chr3A 83.712 792 98 20 2204 2981 743123291 743122517 0.000000e+00 719.0
2 TraesCS3A01G529800 chr3A 85.882 425 37 7 1310 1723 569877579 569877167 9.320000e-117 431.0
3 TraesCS3A01G529800 chr3A 85.679 405 35 7 1330 1723 376081574 376081182 5.650000e-109 405.0
4 TraesCS3A01G529800 chr3A 82.308 260 40 5 3763 4020 743113153 743112898 2.200000e-53 220.0
5 TraesCS3A01G529800 chr3A 84.492 187 20 4 2971 3156 743114126 743113948 4.820000e-40 176.0
6 TraesCS3A01G529800 chr3A 90.909 132 4 1 3270 3393 743113891 743113760 2.240000e-38 171.0
7 TraesCS3A01G529800 chr3D 90.518 3955 231 72 284 4159 609610817 609606928 0.000000e+00 5094.0
8 TraesCS3A01G529800 chr3D 81.617 767 92 24 3231 3976 609582599 609581861 1.450000e-164 590.0
9 TraesCS3A01G529800 chr3D 94.526 274 12 2 1 274 609611330 609611060 2.020000e-113 420.0
10 TraesCS3A01G529800 chr3D 85.000 180 24 2 2920 3097 609574524 609574702 3.730000e-41 180.0
11 TraesCS3A01G529800 chr3B 87.753 2368 187 39 832 3153 820466409 820464099 0.000000e+00 2671.0
12 TraesCS3A01G529800 chr3B 83.133 747 95 22 3287 4020 820294792 820294064 0.000000e+00 652.0
13 TraesCS3A01G529800 chr3B 87.815 476 43 9 3309 3774 820463976 820463506 1.150000e-150 544.0
14 TraesCS3A01G529800 chr3B 83.270 263 38 6 3629 3887 820430185 820429925 2.180000e-58 237.0
15 TraesCS3A01G529800 chr3B 80.952 126 15 1 3913 4029 820429737 820429612 1.800000e-14 91.6
16 TraesCS3A01G529800 chr7A 83.713 614 66 14 1445 2046 182095700 182095109 2.470000e-152 549.0
17 TraesCS3A01G529800 chr7A 85.397 315 24 6 1419 1723 705101743 705101441 1.640000e-79 307.0
18 TraesCS3A01G529800 chr7A 86.857 175 6 3 1559 1723 7052167 7052334 3.730000e-41 180.0
19 TraesCS3A01G529800 chr7A 78.862 123 9 8 442 548 713736548 713736669 3.030000e-07 67.6
20 TraesCS3A01G529800 chr2A 81.513 714 79 27 1339 2040 21408012 21408684 5.340000e-149 538.0
21 TraesCS3A01G529800 chr2A 82.103 542 83 12 2178 2715 25107611 25107080 7.160000e-123 451.0
22 TraesCS3A01G529800 chr1D 86.824 425 33 7 1310 1723 415845616 415845204 1.990000e-123 453.0
23 TraesCS3A01G529800 chr6A 86.118 425 35 8 1310 1723 65634234 65633823 2.000000e-118 436.0
24 TraesCS3A01G529800 chr6A 90.909 44 4 0 484 527 494361463 494361506 5.070000e-05 60.2
25 TraesCS3A01G529800 chr5A 86.396 419 34 7 1310 1717 607324260 607324666 2.000000e-118 436.0
26 TraesCS3A01G529800 chr5A 91.304 46 4 0 486 531 699490854 699490899 3.920000e-06 63.9
27 TraesCS3A01G529800 chr2D 86.118 425 36 8 1310 1723 465338902 465339314 2.000000e-118 436.0
28 TraesCS3A01G529800 chr2D 82.111 559 41 25 1141 1687 104592005 104592516 1.560000e-114 424.0
29 TraesCS3A01G529800 chr2D 75.000 308 58 12 484 788 114141487 114141778 1.770000e-24 124.0
30 TraesCS3A01G529800 chr2D 78.431 102 9 6 442 531 506650116 506650216 2.000000e-03 54.7
31 TraesCS3A01G529800 chr2B 85.176 425 40 8 1310 1723 137368814 137368402 9.390000e-112 414.0
32 TraesCS3A01G529800 chr6B 87.129 303 33 4 1311 1612 504877531 504877234 5.810000e-89 339.0
33 TraesCS3A01G529800 chr6B 100.000 29 0 0 766 794 76856355 76856383 2.000000e-03 54.7
34 TraesCS3A01G529800 chr7B 81.013 474 47 23 1141 1612 398034629 398035061 2.090000e-88 337.0
35 TraesCS3A01G529800 chr6D 76.562 192 29 10 486 663 34307390 34307579 1.800000e-14 91.6
36 TraesCS3A01G529800 chr4B 73.188 276 56 15 502 763 627542863 627543134 3.010000e-12 84.2
37 TraesCS3A01G529800 chr5D 95.122 41 2 0 486 526 119252407 119252367 1.090000e-06 65.8
38 TraesCS3A01G529800 chr5B 95.122 41 2 0 486 526 131713761 131713721 1.090000e-06 65.8
39 TraesCS3A01G529800 chr4D 100.000 31 0 0 766 796 368477553 368477583 1.820000e-04 58.4
40 TraesCS3A01G529800 chr1B 97.143 35 0 1 761 794 192700114 192700148 1.820000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G529800 chr3A 743127536 743132225 4689 True 8661.0 8661 100.000 1 4690 1 chr3A.!!$R4 4689
1 TraesCS3A01G529800 chr3A 743122517 743123291 774 True 719.0 719 83.712 2204 2981 1 chr3A.!!$R3 777
2 TraesCS3A01G529800 chr3D 609606928 609611330 4402 True 2757.0 5094 92.522 1 4159 2 chr3D.!!$R2 4158
3 TraesCS3A01G529800 chr3D 609581861 609582599 738 True 590.0 590 81.617 3231 3976 1 chr3D.!!$R1 745
4 TraesCS3A01G529800 chr3B 820463506 820466409 2903 True 1607.5 2671 87.784 832 3774 2 chr3B.!!$R3 2942
5 TraesCS3A01G529800 chr3B 820294064 820294792 728 True 652.0 652 83.133 3287 4020 1 chr3B.!!$R1 733
6 TraesCS3A01G529800 chr7A 182095109 182095700 591 True 549.0 549 83.713 1445 2046 1 chr7A.!!$R1 601
7 TraesCS3A01G529800 chr2A 21408012 21408684 672 False 538.0 538 81.513 1339 2040 1 chr2A.!!$F1 701
8 TraesCS3A01G529800 chr2A 25107080 25107611 531 True 451.0 451 82.103 2178 2715 1 chr2A.!!$R1 537
9 TraesCS3A01G529800 chr2D 104592005 104592516 511 False 424.0 424 82.111 1141 1687 1 chr2D.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1102 0.318784 ACTTCACAACGAGCCGAGAC 60.319 55.0 1.5 0.0 0.00 3.36 F
1433 1711 0.811616 CCTTGGGCTGCACTACGATC 60.812 60.0 2.5 0.0 0.00 3.69 F
2243 2552 1.244816 GGGAAAAAGAACCTGGACGG 58.755 55.0 0.0 0.0 39.35 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2842 3171 0.519586 CGAGTTCTCGACGCTCAGTC 60.520 60.000 15.87 0.0 46.16 3.51 R
2873 3202 1.071385 GCCTCCCATCATACAGACAGG 59.929 57.143 0.00 0.0 0.00 4.00 R
4193 4584 0.459237 CACTACTGCTGGCCTTCGAG 60.459 60.000 3.32 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 4.203226 TGAACTGTGCAACTAAACCATGA 58.797 39.130 0.00 0.00 38.04 3.07
157 158 6.883744 ACCATGAAACCATTTTTACTGTTGT 58.116 32.000 0.00 0.00 0.00 3.32
166 167 5.173131 CCATTTTTACTGTTGTGTTTCTCGC 59.827 40.000 0.00 0.00 0.00 5.03
172 173 0.573521 GTTGTGTTTCTCGCGTCGAA 59.426 50.000 5.77 7.79 34.74 3.71
179 180 3.001431 TGTTTCTCGCGTCGAAATTTTGA 59.999 39.130 22.02 3.86 34.74 2.69
182 183 4.198473 TCTCGCGTCGAAATTTTGAAAA 57.802 36.364 9.77 0.00 34.74 2.29
203 204 3.215151 ACGTGATCCGATGAGACATACT 58.785 45.455 10.05 0.00 40.70 2.12
227 228 0.901827 ATTTGAAAATGGGGGACGCC 59.098 50.000 0.00 0.00 42.25 5.68
230 231 4.751820 AAAATGGGGGACGCCGGG 62.752 66.667 2.18 0.00 42.25 5.73
279 512 9.726232 AAAAAGATTAGAACCAAAAACGAGTAC 57.274 29.630 0.00 0.00 0.00 2.73
282 515 8.754230 AGATTAGAACCAAAAACGAGTACTAC 57.246 34.615 0.00 0.00 0.00 2.73
335 569 3.526931 CATGTACTCATGGGTCGTTCT 57.473 47.619 0.00 0.00 45.30 3.01
365 599 0.319297 AAGCCCAGACGACGTAACAC 60.319 55.000 0.00 0.00 0.00 3.32
376 610 3.194116 ACGACGTAACACATATTCTGGGT 59.806 43.478 0.00 0.00 45.97 4.51
388 622 2.550277 TTCTGGGTCTGGATCTAGCA 57.450 50.000 0.23 0.00 0.00 3.49
400 634 2.549778 GGATCTAGCAGCCCATCTCAAC 60.550 54.545 0.00 0.00 0.00 3.18
412 646 3.737172 CTCAACCAAAGCCCGCCG 61.737 66.667 0.00 0.00 0.00 6.46
435 669 4.101448 ACGGCTGGCATGACCCTC 62.101 66.667 0.00 0.00 37.83 4.30
439 673 1.708993 GGCTGGCATGACCCTCCATA 61.709 60.000 0.00 0.00 37.83 2.74
463 698 3.152703 CACGACACGGGCTAAACG 58.847 61.111 0.00 0.00 37.36 3.60
531 778 4.720902 CCAGCATGACACGGCCCA 62.721 66.667 0.00 0.00 39.69 5.36
538 785 2.023673 CATGACACGGCCCATGTATTT 58.976 47.619 7.28 0.00 36.36 1.40
542 789 5.037383 TGACACGGCCCATGTATTTTATA 57.963 39.130 7.28 0.00 0.00 0.98
548 795 7.708752 ACACGGCCCATGTATTTTATATTTTTG 59.291 33.333 5.49 0.00 0.00 2.44
601 852 1.338107 GGCCTAAAAACAGCCCAACT 58.662 50.000 0.00 0.00 41.00 3.16
602 853 2.521126 GGCCTAAAAACAGCCCAACTA 58.479 47.619 0.00 0.00 41.00 2.24
605 856 3.572682 GCCTAAAAACAGCCCAACTACTT 59.427 43.478 0.00 0.00 0.00 2.24
606 857 4.763279 GCCTAAAAACAGCCCAACTACTTA 59.237 41.667 0.00 0.00 0.00 2.24
655 906 1.376166 CCACGTGCCGGTCCATTTA 60.376 57.895 10.91 0.00 0.00 1.40
666 917 6.094464 GTGCCGGTCCATTTAATAACTAAACT 59.906 38.462 1.90 0.00 32.26 2.66
675 926 8.511321 CCATTTAATAACTAAACTGTGTCTGCA 58.489 33.333 0.00 0.00 32.26 4.41
677 928 9.062524 ATTTAATAACTAAACTGTGTCTGCACA 57.937 29.630 0.41 0.41 41.28 4.57
698 949 4.681978 GAGTGAGGCACGCGGGTT 62.682 66.667 11.45 0.00 39.64 4.11
730 981 4.025401 CGCCTTGGAACGTGCCAC 62.025 66.667 17.19 2.62 37.75 5.01
801 1052 0.877743 GTTTGGCCAGCTCTTCTCAC 59.122 55.000 5.11 0.00 0.00 3.51
810 1061 1.674057 CTCTTCTCACCCCACGCTT 59.326 57.895 0.00 0.00 0.00 4.68
851 1102 0.318784 ACTTCACAACGAGCCGAGAC 60.319 55.000 1.50 0.00 0.00 3.36
885 1136 3.153270 GAATCCGCTCCTCCCCGAC 62.153 68.421 0.00 0.00 0.00 4.79
896 1148 3.771160 CCCCGACCTCCAACCTCG 61.771 72.222 0.00 0.00 0.00 4.63
1195 1459 4.802051 ACCGAGGTACGCCGCCTA 62.802 66.667 0.00 0.00 41.07 3.93
1433 1711 0.811616 CCTTGGGCTGCACTACGATC 60.812 60.000 2.50 0.00 0.00 3.69
1640 1936 6.366877 CCAAGTGCTTCTTTTTGTTATGGATG 59.633 38.462 0.00 0.00 33.63 3.51
1745 2041 6.018507 GGAAACGCTCAAGTCTTGTAAACTAA 60.019 38.462 12.30 0.00 0.00 2.24
1750 2046 6.088350 CGCTCAAGTCTTGTAAACTAACTCTC 59.912 42.308 12.30 0.00 0.00 3.20
1788 2084 7.164122 AGAAAGAATCTGAATGTAAGCTCACA 58.836 34.615 0.00 0.00 36.88 3.58
1869 2165 2.158534 TCAGAGGGCTAGGAGAGATGAC 60.159 54.545 0.00 0.00 0.00 3.06
1904 2200 5.366477 TCATATCACATCAGCTCCAAGGTAA 59.634 40.000 0.00 0.00 0.00 2.85
1945 2241 7.555195 TCTGAATCACGGTTCTAGTACAATAGA 59.445 37.037 1.69 0.00 0.00 1.98
2021 2330 4.447138 AGGGTTCAAACATACAAGTCCA 57.553 40.909 0.00 0.00 0.00 4.02
2022 2331 4.398319 AGGGTTCAAACATACAAGTCCAG 58.602 43.478 0.00 0.00 0.00 3.86
2043 2352 2.432510 GGTAGTCCAGTCTGAGGGATTG 59.567 54.545 0.00 0.00 35.25 2.67
2048 2357 2.978978 TCCAGTCTGAGGGATTGTTTCA 59.021 45.455 0.00 0.00 30.88 2.69
2091 2400 3.826157 TCTGCCCTGGAAATTTGTAGTTG 59.174 43.478 0.00 0.00 0.00 3.16
2243 2552 1.244816 GGGAAAAAGAACCTGGACGG 58.755 55.000 0.00 0.00 39.35 4.79
2345 2658 1.952296 GTGAGCTTGAGGCCATAATGG 59.048 52.381 5.01 0.00 43.05 3.16
2369 2685 6.183360 GGGTGACATTTCTTCTCTTTTTGTGA 60.183 38.462 0.00 0.00 0.00 3.58
2392 2708 6.490040 TGAGAAGGGGTTAAATTTGTCTTCAG 59.510 38.462 0.00 0.00 33.65 3.02
2441 2757 7.523219 ACGATGAGTATTCGTTTTGCATAAAA 58.477 30.769 0.00 0.00 46.96 1.52
2485 2802 5.049612 GCTGTGAGTTACAAGTTTCTTACCC 60.050 44.000 0.00 0.00 39.20 3.69
2616 2935 5.183904 GGTGAAGGATTTGAACTGCACTAAT 59.816 40.000 0.00 0.00 41.93 1.73
2667 2991 1.303561 AAGATTCCAAGCGGCTGCA 60.304 52.632 21.93 0.00 46.23 4.41
2689 3013 6.211184 TGCAATCAAAGGTATTCCATGTTTCT 59.789 34.615 0.00 0.00 35.89 2.52
2690 3014 6.753744 GCAATCAAAGGTATTCCATGTTTCTC 59.246 38.462 0.00 0.00 35.89 2.87
2692 3016 9.177608 CAATCAAAGGTATTCCATGTTTCTCTA 57.822 33.333 0.00 0.00 35.89 2.43
2719 3043 5.472301 ACTGTATCAAATCCATTTCCCCT 57.528 39.130 0.00 0.00 0.00 4.79
2742 3066 6.587608 CCTGAAATGCCAGTTAATTGAGTTTC 59.412 38.462 0.00 7.39 32.43 2.78
2781 3106 7.254455 CCCAAGAGTAACTCTGTTAATATTGCG 60.254 40.741 15.25 7.32 40.28 4.85
2804 3129 5.051907 CGGCAATAACGTTCTCTGTATGTAC 60.052 44.000 2.82 0.00 0.00 2.90
2814 3140 6.971184 CGTTCTCTGTATGTACCGAGTATTTT 59.029 38.462 10.19 0.00 38.30 1.82
2832 3158 9.803315 GAGTATTTTCCTAAATTTCCACCAATC 57.197 33.333 0.00 0.00 35.61 2.67
2839 3165 8.028652 TCCTAAATTTCCACCAATCTGTTTTT 57.971 30.769 0.00 0.00 0.00 1.94
2860 3189 3.299738 GACTGAGCGTCGAGAACTC 57.700 57.895 0.00 0.00 32.04 3.01
2874 3203 4.295857 GAGAACTCGAGATGAACTACCC 57.704 50.000 21.68 0.00 0.00 3.69
3124 3466 4.144297 ACTGCTAACTGAAAGAAATGCCA 58.856 39.130 0.00 0.00 37.43 4.92
3155 3497 1.901833 TGCAGAGCAGTTCATGACCTA 59.098 47.619 0.00 0.00 33.32 3.08
3156 3498 2.275318 GCAGAGCAGTTCATGACCTAC 58.725 52.381 0.00 0.00 0.00 3.18
3167 3536 7.155328 CAGTTCATGACCTACTGTACTTTCTT 58.845 38.462 15.14 0.00 35.65 2.52
3241 3610 6.174049 GTTGCCTATCTTACTCTTTGTTCCT 58.826 40.000 0.00 0.00 0.00 3.36
3246 3615 7.870445 GCCTATCTTACTCTTTGTTCCTATCTG 59.130 40.741 0.00 0.00 0.00 2.90
3251 3620 5.184892 ACTCTTTGTTCCTATCTGCCATT 57.815 39.130 0.00 0.00 0.00 3.16
3284 3653 6.730960 AAATGTGCTGCATATTCCTTTTTG 57.269 33.333 22.16 0.00 36.67 2.44
3291 3665 6.183360 TGCTGCATATTCCTTTTTGATACCAG 60.183 38.462 0.00 0.00 0.00 4.00
3580 3957 0.620410 TCATCCCCTGGGTACACTGG 60.620 60.000 13.93 13.93 36.47 4.00
3627 4012 2.229784 AGAGCAGCAAAATAGTGTTGGC 59.770 45.455 0.00 0.00 31.00 4.52
3742 4130 2.488937 TGTCATGCTGTTTGGCTGTATG 59.511 45.455 0.00 0.00 39.31 2.39
3774 4162 0.665298 GCCCTCATCGAGCAAATTCC 59.335 55.000 0.00 0.00 0.00 3.01
3858 4247 2.301577 GTTCCATCTCGAACTCCCTG 57.698 55.000 0.00 0.00 39.27 4.45
3864 4253 2.820728 TCTCGAACTCCCTGTCCATA 57.179 50.000 0.00 0.00 0.00 2.74
3865 4254 2.656002 TCTCGAACTCCCTGTCCATAG 58.344 52.381 0.00 0.00 0.00 2.23
3866 4255 2.241430 TCTCGAACTCCCTGTCCATAGA 59.759 50.000 0.00 0.00 0.00 1.98
3870 4259 4.141228 TCGAACTCCCTGTCCATAGATAGT 60.141 45.833 0.00 0.00 29.55 2.12
3889 4278 4.713792 AGTTTCTGGTCCTCTCAACATT 57.286 40.909 0.00 0.00 0.00 2.71
3927 4316 6.020599 CACATGTATCTGTACAGCGAAGTTAC 60.021 42.308 18.45 11.80 43.62 2.50
4084 4475 7.385752 CGTAAACTCCAAACCTGTTATAGTTCA 59.614 37.037 0.00 0.00 0.00 3.18
4121 4512 3.274095 TCGGCCATGAACATGAACATA 57.726 42.857 15.21 0.00 41.20 2.29
4150 4541 1.555075 TGATGCAGAGGGACTTGTACC 59.445 52.381 0.00 0.00 41.55 3.34
4152 4543 1.218316 GCAGAGGGACTTGTACCGG 59.782 63.158 0.00 0.00 41.55 5.28
4153 4544 1.542187 GCAGAGGGACTTGTACCGGT 61.542 60.000 13.98 13.98 41.55 5.28
4154 4545 1.843368 CAGAGGGACTTGTACCGGTA 58.157 55.000 11.16 11.16 41.55 4.02
4155 4546 1.749634 CAGAGGGACTTGTACCGGTAG 59.250 57.143 16.41 8.10 41.55 3.18
4156 4547 1.357079 AGAGGGACTTGTACCGGTAGT 59.643 52.381 16.41 11.96 41.55 2.73
4161 4552 2.440409 GACTTGTACCGGTAGTCCTCA 58.560 52.381 20.83 10.64 33.77 3.86
4162 4553 2.422832 GACTTGTACCGGTAGTCCTCAG 59.577 54.545 20.83 10.99 33.77 3.35
4163 4554 1.134560 CTTGTACCGGTAGTCCTCAGC 59.865 57.143 16.41 0.60 0.00 4.26
4164 4555 1.028330 TGTACCGGTAGTCCTCAGCG 61.028 60.000 16.41 0.00 36.69 5.18
4165 4556 2.117156 TACCGGTAGTCCTCAGCGC 61.117 63.158 11.16 0.00 35.66 5.92
4166 4557 4.208686 CCGGTAGTCCTCAGCGCC 62.209 72.222 2.29 0.00 35.66 6.53
4167 4558 4.208686 CGGTAGTCCTCAGCGCCC 62.209 72.222 2.29 0.00 0.00 6.13
4168 4559 2.760385 GGTAGTCCTCAGCGCCCT 60.760 66.667 2.29 0.00 0.00 5.19
4169 4560 2.787567 GGTAGTCCTCAGCGCCCTC 61.788 68.421 2.29 0.00 0.00 4.30
4170 4561 2.052690 GTAGTCCTCAGCGCCCTCA 61.053 63.158 2.29 0.00 0.00 3.86
4171 4562 1.754621 TAGTCCTCAGCGCCCTCAG 60.755 63.158 2.29 0.00 0.00 3.35
4172 4563 4.828925 GTCCTCAGCGCCCTCAGC 62.829 72.222 2.29 0.00 38.52 4.26
4182 4573 4.899239 CCCTCAGCGCCGCTTAGG 62.899 72.222 28.14 28.14 46.30 2.69
4191 4582 4.126524 CCGCTTAGGCTACTTGGC 57.873 61.111 0.00 0.00 42.15 4.52
4192 4583 1.883084 CCGCTTAGGCTACTTGGCG 60.883 63.158 17.43 17.43 46.88 5.69
4193 4584 2.526120 CGCTTAGGCTACTTGGCGC 61.526 63.158 0.00 0.00 46.88 6.53
4194 4585 1.153349 GCTTAGGCTACTTGGCGCT 60.153 57.895 7.64 0.00 46.88 5.92
4195 4586 1.154814 GCTTAGGCTACTTGGCGCTC 61.155 60.000 7.64 0.00 46.88 5.03
4196 4587 0.872021 CTTAGGCTACTTGGCGCTCG 60.872 60.000 7.64 0.00 46.88 5.03
4197 4588 1.317431 TTAGGCTACTTGGCGCTCGA 61.317 55.000 7.64 0.00 46.88 4.04
4198 4589 1.317431 TAGGCTACTTGGCGCTCGAA 61.317 55.000 7.64 0.00 46.88 3.71
4199 4590 2.167861 GGCTACTTGGCGCTCGAAG 61.168 63.158 7.64 9.99 0.00 3.79
4200 4591 2.167861 GCTACTTGGCGCTCGAAGG 61.168 63.158 7.64 0.00 0.00 3.46
4201 4592 2.125673 TACTTGGCGCTCGAAGGC 60.126 61.111 7.64 7.10 0.00 4.35
4208 4599 4.749310 CGCTCGAAGGCCAGCAGT 62.749 66.667 5.01 0.00 35.15 4.40
4209 4600 2.579201 GCTCGAAGGCCAGCAGTA 59.421 61.111 5.01 0.00 35.56 2.74
4210 4601 1.520342 GCTCGAAGGCCAGCAGTAG 60.520 63.158 5.01 0.00 35.56 2.57
4211 4602 1.893786 CTCGAAGGCCAGCAGTAGT 59.106 57.895 5.01 0.00 0.00 2.73
4212 4603 0.459237 CTCGAAGGCCAGCAGTAGTG 60.459 60.000 5.01 0.00 0.00 2.74
4213 4604 1.448540 CGAAGGCCAGCAGTAGTGG 60.449 63.158 5.01 0.00 38.21 4.00
4214 4605 1.078143 GAAGGCCAGCAGTAGTGGG 60.078 63.158 5.01 0.00 35.39 4.61
4218 4609 4.473520 CCAGCAGTAGTGGGCCGG 62.474 72.222 0.00 0.00 0.00 6.13
4222 4613 4.473520 CAGTAGTGGGCCGGCCAG 62.474 72.222 44.46 21.23 37.98 4.85
4230 4621 4.925861 GGCCGGCCAGCATCTCTC 62.926 72.222 40.73 8.62 35.81 3.20
4233 4624 4.519437 CGGCCAGCATCTCTCGCA 62.519 66.667 2.24 0.00 29.89 5.10
4234 4625 2.110627 GGCCAGCATCTCTCGCAT 59.889 61.111 0.00 0.00 29.89 4.73
4235 4626 1.960250 GGCCAGCATCTCTCGCATC 60.960 63.158 0.00 0.00 29.89 3.91
4236 4627 1.960250 GCCAGCATCTCTCGCATCC 60.960 63.158 0.00 0.00 0.00 3.51
4237 4628 1.444672 CCAGCATCTCTCGCATCCA 59.555 57.895 0.00 0.00 0.00 3.41
4238 4629 0.600518 CCAGCATCTCTCGCATCCAG 60.601 60.000 0.00 0.00 0.00 3.86
4239 4630 1.069427 AGCATCTCTCGCATCCAGC 59.931 57.895 0.00 0.00 40.87 4.85
4240 4631 1.227468 GCATCTCTCGCATCCAGCA 60.227 57.895 0.00 0.00 46.13 4.41
4241 4632 0.812811 GCATCTCTCGCATCCAGCAA 60.813 55.000 0.00 0.00 46.13 3.91
4242 4633 1.218763 CATCTCTCGCATCCAGCAAG 58.781 55.000 0.00 0.00 46.13 4.01
4243 4634 1.117994 ATCTCTCGCATCCAGCAAGA 58.882 50.000 0.00 0.00 46.13 3.02
4244 4635 0.897621 TCTCTCGCATCCAGCAAGAA 59.102 50.000 0.00 0.00 46.13 2.52
4245 4636 1.005340 CTCTCGCATCCAGCAAGAAC 58.995 55.000 0.00 0.00 46.13 3.01
4246 4637 0.321346 TCTCGCATCCAGCAAGAACA 59.679 50.000 0.00 0.00 46.13 3.18
4247 4638 1.159285 CTCGCATCCAGCAAGAACAA 58.841 50.000 0.00 0.00 46.13 2.83
4248 4639 1.536766 CTCGCATCCAGCAAGAACAAA 59.463 47.619 0.00 0.00 46.13 2.83
4249 4640 1.952990 TCGCATCCAGCAAGAACAAAA 59.047 42.857 0.00 0.00 46.13 2.44
4250 4641 2.360483 TCGCATCCAGCAAGAACAAAAA 59.640 40.909 0.00 0.00 46.13 1.94
4251 4642 3.005684 TCGCATCCAGCAAGAACAAAAAT 59.994 39.130 0.00 0.00 46.13 1.82
4252 4643 3.365820 CGCATCCAGCAAGAACAAAAATC 59.634 43.478 0.00 0.00 46.13 2.17
4253 4644 4.563061 GCATCCAGCAAGAACAAAAATCT 58.437 39.130 0.00 0.00 44.79 2.40
4254 4645 4.992951 GCATCCAGCAAGAACAAAAATCTT 59.007 37.500 0.00 0.00 44.79 2.40
4255 4646 5.119743 GCATCCAGCAAGAACAAAAATCTTC 59.880 40.000 0.00 0.00 44.79 2.87
4256 4647 5.850557 TCCAGCAAGAACAAAAATCTTCA 57.149 34.783 0.00 0.00 34.99 3.02
4257 4648 5.835257 TCCAGCAAGAACAAAAATCTTCAG 58.165 37.500 0.00 0.00 34.99 3.02
4258 4649 4.446719 CCAGCAAGAACAAAAATCTTCAGC 59.553 41.667 0.00 0.00 34.99 4.26
4259 4650 5.287226 CAGCAAGAACAAAAATCTTCAGCT 58.713 37.500 0.00 0.00 36.91 4.24
4260 4651 5.751990 CAGCAAGAACAAAAATCTTCAGCTT 59.248 36.000 0.00 0.00 35.30 3.74
4261 4652 6.257193 CAGCAAGAACAAAAATCTTCAGCTTT 59.743 34.615 0.00 0.00 35.30 3.51
4262 4653 7.436080 CAGCAAGAACAAAAATCTTCAGCTTTA 59.564 33.333 0.00 0.00 35.30 1.85
4263 4654 8.146412 AGCAAGAACAAAAATCTTCAGCTTTAT 58.854 29.630 0.00 0.00 34.39 1.40
4264 4655 8.768019 GCAAGAACAAAAATCTTCAGCTTTATT 58.232 29.630 0.00 0.00 34.99 1.40
4274 4665 9.538508 AAATCTTCAGCTTTATTATTCCATTGC 57.461 29.630 0.00 0.00 0.00 3.56
4275 4666 6.728200 TCTTCAGCTTTATTATTCCATTGCG 58.272 36.000 0.00 0.00 0.00 4.85
4276 4667 6.318648 TCTTCAGCTTTATTATTCCATTGCGT 59.681 34.615 0.00 0.00 0.00 5.24
4277 4668 6.449635 TCAGCTTTATTATTCCATTGCGTT 57.550 33.333 0.00 0.00 0.00 4.84
4278 4669 6.862209 TCAGCTTTATTATTCCATTGCGTTT 58.138 32.000 0.00 0.00 0.00 3.60
4279 4670 7.319646 TCAGCTTTATTATTCCATTGCGTTTT 58.680 30.769 0.00 0.00 0.00 2.43
4280 4671 7.487829 TCAGCTTTATTATTCCATTGCGTTTTC 59.512 33.333 0.00 0.00 0.00 2.29
4281 4672 7.275341 CAGCTTTATTATTCCATTGCGTTTTCA 59.725 33.333 0.00 0.00 0.00 2.69
4282 4673 7.816995 AGCTTTATTATTCCATTGCGTTTTCAA 59.183 29.630 0.00 0.00 0.00 2.69
4283 4674 8.439286 GCTTTATTATTCCATTGCGTTTTCAAA 58.561 29.630 0.00 0.00 0.00 2.69
4287 4678 7.778470 TTATTCCATTGCGTTTTCAAAAAGT 57.222 28.000 0.00 0.00 0.00 2.66
4288 4679 6.676237 ATTCCATTGCGTTTTCAAAAAGTT 57.324 29.167 0.00 0.00 0.00 2.66
4289 4680 5.710613 TCCATTGCGTTTTCAAAAAGTTC 57.289 34.783 0.00 0.00 0.00 3.01
4290 4681 5.171476 TCCATTGCGTTTTCAAAAAGTTCA 58.829 33.333 0.00 0.00 0.00 3.18
4291 4682 5.814705 TCCATTGCGTTTTCAAAAAGTTCAT 59.185 32.000 0.00 0.00 0.00 2.57
4292 4683 6.314896 TCCATTGCGTTTTCAAAAAGTTCATT 59.685 30.769 0.00 0.00 0.00 2.57
4293 4684 6.411492 CCATTGCGTTTTCAAAAAGTTCATTG 59.589 34.615 0.00 0.00 0.00 2.82
4294 4685 6.712241 TTGCGTTTTCAAAAAGTTCATTGA 57.288 29.167 0.00 1.10 33.93 2.57
4295 4686 6.900568 TGCGTTTTCAAAAAGTTCATTGAT 57.099 29.167 5.24 0.00 35.63 2.57
4296 4687 7.301068 TGCGTTTTCAAAAAGTTCATTGATT 57.699 28.000 5.24 0.00 35.63 2.57
4297 4688 7.746929 TGCGTTTTCAAAAAGTTCATTGATTT 58.253 26.923 5.24 0.00 35.63 2.17
4298 4689 7.691463 TGCGTTTTCAAAAAGTTCATTGATTTG 59.309 29.630 5.24 4.72 35.63 2.32
4299 4690 7.902403 GCGTTTTCAAAAAGTTCATTGATTTGA 59.098 29.630 8.41 8.41 38.00 2.69
4300 4691 9.752274 CGTTTTCAAAAAGTTCATTGATTTGAA 57.248 25.926 16.38 16.38 44.00 2.69
4311 4702 9.919348 AGTTCATTGATTTGAAAATTTTCGTTG 57.081 25.926 22.51 12.97 40.01 4.10
4312 4703 9.913451 GTTCATTGATTTGAAAATTTTCGTTGA 57.087 25.926 22.51 14.56 40.01 3.18
4329 4720 9.535270 TTTTCGTTGATTTTGAAAAATGTTCAC 57.465 25.926 5.76 0.00 38.31 3.18
4330 4721 7.227992 TCGTTGATTTTGAAAAATGTTCACC 57.772 32.000 5.76 0.00 38.64 4.02
4331 4722 7.038659 TCGTTGATTTTGAAAAATGTTCACCT 58.961 30.769 5.76 0.00 38.64 4.00
4332 4723 7.547370 TCGTTGATTTTGAAAAATGTTCACCTT 59.453 29.630 5.76 0.00 38.64 3.50
4333 4724 8.174422 CGTTGATTTTGAAAAATGTTCACCTTT 58.826 29.630 5.76 0.00 38.64 3.11
4334 4725 9.838975 GTTGATTTTGAAAAATGTTCACCTTTT 57.161 25.926 5.76 0.00 38.64 2.27
4336 4727 9.837525 TGATTTTGAAAAATGTTCACCTTTTTG 57.162 25.926 9.55 0.00 38.64 2.44
4337 4728 9.838975 GATTTTGAAAAATGTTCACCTTTTTGT 57.161 25.926 9.55 0.00 38.64 2.83
4369 4760 7.929941 AGTTCATCTATTTTGAGAAAGGTCC 57.070 36.000 0.00 0.00 0.00 4.46
4370 4761 7.461749 AGTTCATCTATTTTGAGAAAGGTCCA 58.538 34.615 0.00 0.00 0.00 4.02
4371 4762 7.391833 AGTTCATCTATTTTGAGAAAGGTCCAC 59.608 37.037 0.00 0.00 0.00 4.02
4372 4763 6.778821 TCATCTATTTTGAGAAAGGTCCACA 58.221 36.000 0.00 0.00 0.00 4.17
4373 4764 7.230747 TCATCTATTTTGAGAAAGGTCCACAA 58.769 34.615 0.00 0.00 0.00 3.33
4374 4765 7.890127 TCATCTATTTTGAGAAAGGTCCACAAT 59.110 33.333 0.00 0.00 0.00 2.71
4375 4766 8.526147 CATCTATTTTGAGAAAGGTCCACAATT 58.474 33.333 0.00 0.00 0.00 2.32
4376 4767 8.477419 TCTATTTTGAGAAAGGTCCACAATTT 57.523 30.769 0.00 0.00 0.00 1.82
4377 4768 8.923270 TCTATTTTGAGAAAGGTCCACAATTTT 58.077 29.630 0.00 0.00 0.00 1.82
4378 4769 9.546428 CTATTTTGAGAAAGGTCCACAATTTTT 57.454 29.630 0.00 0.00 0.00 1.94
4413 4804 8.611654 AGATTTTGAAAAAGTCATGGATTTGG 57.388 30.769 0.00 0.00 35.70 3.28
4414 4805 8.431222 AGATTTTGAAAAAGTCATGGATTTGGA 58.569 29.630 0.00 0.00 35.70 3.53
4415 4806 8.977267 ATTTTGAAAAAGTCATGGATTTGGAA 57.023 26.923 0.00 0.00 35.70 3.53
4416 4807 8.798859 TTTTGAAAAAGTCATGGATTTGGAAA 57.201 26.923 0.00 0.00 35.70 3.13
4417 4808 8.798859 TTTGAAAAAGTCATGGATTTGGAAAA 57.201 26.923 0.00 0.00 35.70 2.29
4418 4809 8.798859 TTGAAAAAGTCATGGATTTGGAAAAA 57.201 26.923 0.00 0.00 35.70 1.94
4481 4872 9.996554 AGAGAAAGAAAGGAAAAACAAAAGAAA 57.003 25.926 0.00 0.00 0.00 2.52
4487 4878 8.668353 AGAAAGGAAAAACAAAAGAAAATCAGC 58.332 29.630 0.00 0.00 0.00 4.26
4488 4879 6.925610 AGGAAAAACAAAAGAAAATCAGCC 57.074 33.333 0.00 0.00 0.00 4.85
4489 4880 6.413892 AGGAAAAACAAAAGAAAATCAGCCA 58.586 32.000 0.00 0.00 0.00 4.75
4490 4881 6.883756 AGGAAAAACAAAAGAAAATCAGCCAA 59.116 30.769 0.00 0.00 0.00 4.52
4491 4882 7.066163 AGGAAAAACAAAAGAAAATCAGCCAAG 59.934 33.333 0.00 0.00 0.00 3.61
4492 4883 7.065683 GGAAAAACAAAAGAAAATCAGCCAAGA 59.934 33.333 0.00 0.00 0.00 3.02
4493 4884 7.920160 AAAACAAAAGAAAATCAGCCAAGAA 57.080 28.000 0.00 0.00 0.00 2.52
4494 4885 7.920160 AAACAAAAGAAAATCAGCCAAGAAA 57.080 28.000 0.00 0.00 0.00 2.52
4495 4886 7.920160 AACAAAAGAAAATCAGCCAAGAAAA 57.080 28.000 0.00 0.00 0.00 2.29
4496 4887 7.920160 ACAAAAGAAAATCAGCCAAGAAAAA 57.080 28.000 0.00 0.00 0.00 1.94
4497 4888 7.751732 ACAAAAGAAAATCAGCCAAGAAAAAC 58.248 30.769 0.00 0.00 0.00 2.43
4498 4889 6.925610 AAAGAAAATCAGCCAAGAAAAACC 57.074 33.333 0.00 0.00 0.00 3.27
4499 4890 4.620982 AGAAAATCAGCCAAGAAAAACCG 58.379 39.130 0.00 0.00 0.00 4.44
4500 4891 4.340950 AGAAAATCAGCCAAGAAAAACCGA 59.659 37.500 0.00 0.00 0.00 4.69
4501 4892 4.664150 AAATCAGCCAAGAAAAACCGAA 57.336 36.364 0.00 0.00 0.00 4.30
4502 4893 4.664150 AATCAGCCAAGAAAAACCGAAA 57.336 36.364 0.00 0.00 0.00 3.46
4503 4894 4.664150 ATCAGCCAAGAAAAACCGAAAA 57.336 36.364 0.00 0.00 0.00 2.29
4504 4895 4.457834 TCAGCCAAGAAAAACCGAAAAA 57.542 36.364 0.00 0.00 0.00 1.94
4505 4896 5.017294 TCAGCCAAGAAAAACCGAAAAAT 57.983 34.783 0.00 0.00 0.00 1.82
4506 4897 5.047188 TCAGCCAAGAAAAACCGAAAAATC 58.953 37.500 0.00 0.00 0.00 2.17
4507 4898 5.049828 CAGCCAAGAAAAACCGAAAAATCT 58.950 37.500 0.00 0.00 0.00 2.40
4508 4899 5.049828 AGCCAAGAAAAACCGAAAAATCTG 58.950 37.500 0.00 0.00 0.00 2.90
4509 4900 4.318760 GCCAAGAAAAACCGAAAAATCTGC 60.319 41.667 0.00 0.00 0.00 4.26
4510 4901 4.211164 CCAAGAAAAACCGAAAAATCTGCC 59.789 41.667 0.00 0.00 0.00 4.85
4511 4902 4.664150 AGAAAAACCGAAAAATCTGCCA 57.336 36.364 0.00 0.00 0.00 4.92
4512 4903 5.213891 AGAAAAACCGAAAAATCTGCCAT 57.786 34.783 0.00 0.00 0.00 4.40
4513 4904 4.990426 AGAAAAACCGAAAAATCTGCCATG 59.010 37.500 0.00 0.00 0.00 3.66
4514 4905 4.599047 AAAACCGAAAAATCTGCCATGA 57.401 36.364 0.00 0.00 0.00 3.07
4515 4906 4.599047 AAACCGAAAAATCTGCCATGAA 57.401 36.364 0.00 0.00 0.00 2.57
4516 4907 4.599047 AACCGAAAAATCTGCCATGAAA 57.401 36.364 0.00 0.00 0.00 2.69
4517 4908 4.599047 ACCGAAAAATCTGCCATGAAAA 57.401 36.364 0.00 0.00 0.00 2.29
4518 4909 4.954875 ACCGAAAAATCTGCCATGAAAAA 58.045 34.783 0.00 0.00 0.00 1.94
4537 4928 4.718940 AAAACCAAAGAATATCGGCCAG 57.281 40.909 2.24 0.00 0.00 4.85
4538 4929 3.366052 AACCAAAGAATATCGGCCAGT 57.634 42.857 2.24 0.00 0.00 4.00
4539 4930 3.366052 ACCAAAGAATATCGGCCAGTT 57.634 42.857 2.24 0.00 0.00 3.16
4540 4931 4.497291 ACCAAAGAATATCGGCCAGTTA 57.503 40.909 2.24 0.00 0.00 2.24
4541 4932 4.850680 ACCAAAGAATATCGGCCAGTTAA 58.149 39.130 2.24 0.00 0.00 2.01
4542 4933 5.445964 ACCAAAGAATATCGGCCAGTTAAT 58.554 37.500 2.24 0.00 0.00 1.40
4543 4934 5.531287 ACCAAAGAATATCGGCCAGTTAATC 59.469 40.000 2.24 0.00 0.00 1.75
4544 4935 5.765182 CCAAAGAATATCGGCCAGTTAATCT 59.235 40.000 2.24 0.93 0.00 2.40
4545 4936 6.293626 CCAAAGAATATCGGCCAGTTAATCTG 60.294 42.308 2.24 0.00 43.27 2.90
4554 4945 1.922570 CAGTTAATCTGGGTCCGTCG 58.077 55.000 0.00 0.00 40.23 5.12
4555 4946 0.175073 AGTTAATCTGGGTCCGTCGC 59.825 55.000 0.00 0.00 0.00 5.19
4556 4947 0.108520 GTTAATCTGGGTCCGTCGCA 60.109 55.000 0.00 0.00 37.44 5.10
4561 4952 2.823114 TGGGTCCGTCGCAGAAAA 59.177 55.556 0.00 0.00 39.69 2.29
4562 4953 1.146485 TGGGTCCGTCGCAGAAAAA 59.854 52.632 0.00 0.00 39.69 1.94
4588 4979 8.432110 ACACATTTTTCACTTATGTTTTTCCC 57.568 30.769 0.00 0.00 30.45 3.97
4589 4980 8.043710 ACACATTTTTCACTTATGTTTTTCCCA 58.956 29.630 0.00 0.00 30.45 4.37
4590 4981 8.887717 CACATTTTTCACTTATGTTTTTCCCAA 58.112 29.630 0.00 0.00 30.45 4.12
4591 4982 9.454859 ACATTTTTCACTTATGTTTTTCCCAAA 57.545 25.926 0.00 0.00 0.00 3.28
4605 4996 7.925043 TTTTTCCCAAAACCTAAGAAAAACC 57.075 32.000 5.18 0.00 39.94 3.27
4606 4997 6.622427 TTTCCCAAAACCTAAGAAAAACCA 57.378 33.333 0.00 0.00 0.00 3.67
4607 4998 5.862678 TCCCAAAACCTAAGAAAAACCAG 57.137 39.130 0.00 0.00 0.00 4.00
4608 4999 4.651962 TCCCAAAACCTAAGAAAAACCAGG 59.348 41.667 0.00 0.00 0.00 4.45
4609 5000 4.202315 CCCAAAACCTAAGAAAAACCAGGG 60.202 45.833 0.00 0.00 32.12 4.45
4610 5001 4.651962 CCAAAACCTAAGAAAAACCAGGGA 59.348 41.667 0.00 0.00 32.12 4.20
4611 5002 5.129650 CCAAAACCTAAGAAAAACCAGGGAA 59.870 40.000 0.00 0.00 32.12 3.97
4612 5003 6.352308 CCAAAACCTAAGAAAAACCAGGGAAA 60.352 38.462 0.00 0.00 32.12 3.13
4613 5004 7.279615 CAAAACCTAAGAAAAACCAGGGAAAT 58.720 34.615 0.00 0.00 32.12 2.17
4614 5005 8.425703 CAAAACCTAAGAAAAACCAGGGAAATA 58.574 33.333 0.00 0.00 32.12 1.40
4615 5006 7.534723 AACCTAAGAAAAACCAGGGAAATAC 57.465 36.000 0.00 0.00 32.12 1.89
4616 5007 6.860034 ACCTAAGAAAAACCAGGGAAATACT 58.140 36.000 0.00 0.00 32.12 2.12
4617 5008 6.719829 ACCTAAGAAAAACCAGGGAAATACTG 59.280 38.462 0.00 0.00 35.74 2.74
4628 5019 6.648879 CAGGGAAATACTGGAAAAAGACAA 57.351 37.500 0.00 0.00 32.38 3.18
4629 5020 7.049799 CAGGGAAATACTGGAAAAAGACAAA 57.950 36.000 0.00 0.00 32.38 2.83
4630 5021 7.496747 CAGGGAAATACTGGAAAAAGACAAAA 58.503 34.615 0.00 0.00 32.38 2.44
4631 5022 7.984617 CAGGGAAATACTGGAAAAAGACAAAAA 59.015 33.333 0.00 0.00 32.38 1.94
4653 5044 8.491605 AAAAACATCTAAAATGCAAAAATGCG 57.508 26.923 0.00 0.00 37.69 4.73
4654 5045 6.783892 AACATCTAAAATGCAAAAATGCGT 57.216 29.167 0.00 0.00 37.69 5.24
4655 5046 7.881643 AACATCTAAAATGCAAAAATGCGTA 57.118 28.000 0.00 0.00 37.69 4.42
4656 5047 7.276953 ACATCTAAAATGCAAAAATGCGTAC 57.723 32.000 0.00 0.00 37.69 3.67
4657 5048 6.865726 ACATCTAAAATGCAAAAATGCGTACA 59.134 30.769 0.00 0.00 37.69 2.90
4658 5049 6.926280 TCTAAAATGCAAAAATGCGTACAG 57.074 33.333 0.00 0.00 37.69 2.74
4659 5050 6.673106 TCTAAAATGCAAAAATGCGTACAGA 58.327 32.000 0.00 0.00 37.69 3.41
4660 5051 7.142021 TCTAAAATGCAAAAATGCGTACAGAA 58.858 30.769 0.00 0.00 37.69 3.02
4661 5052 6.595772 AAAATGCAAAAATGCGTACAGAAA 57.404 29.167 0.00 0.00 37.69 2.52
4662 5053 6.595772 AAATGCAAAAATGCGTACAGAAAA 57.404 29.167 0.00 0.00 37.69 2.29
4663 5054 6.595772 AATGCAAAAATGCGTACAGAAAAA 57.404 29.167 0.00 0.00 37.69 1.94
4681 5072 0.521735 AAAAATCTGAACGGAGCGCC 59.478 50.000 2.29 0.00 0.00 6.53
4682 5073 1.305930 AAAATCTGAACGGAGCGCCC 61.306 55.000 2.29 3.94 0.00 6.13
4683 5074 3.682292 AATCTGAACGGAGCGCCCC 62.682 63.158 2.29 0.00 0.00 5.80
4685 5076 4.821589 CTGAACGGAGCGCCCCTC 62.822 72.222 6.33 0.00 39.98 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.930656 ACAAGGGGGATGGGTGGAG 60.931 63.158 0.00 0.00 0.00 3.86
120 121 4.202111 GGTTTCATGGTTTAGTTGCACAGT 60.202 41.667 0.00 0.00 0.00 3.55
139 140 7.274686 CGAGAAACACAACAGTAAAAATGGTTT 59.725 33.333 0.00 0.00 0.00 3.27
157 158 3.001431 TCAAAATTTCGACGCGAGAAACA 59.999 39.130 26.68 13.52 39.96 2.83
166 167 5.164320 GGATCACGTTTTCAAAATTTCGACG 60.164 40.000 0.00 6.12 35.39 5.12
172 173 6.007936 TCATCGGATCACGTTTTCAAAATT 57.992 33.333 0.00 0.00 44.69 1.82
179 180 3.313012 TGTCTCATCGGATCACGTTTT 57.687 42.857 0.00 0.00 44.69 2.43
182 183 3.215151 AGTATGTCTCATCGGATCACGT 58.785 45.455 0.00 0.00 44.69 4.49
203 204 4.998033 GCGTCCCCCATTTTCAAATAAAAA 59.002 37.500 0.00 0.00 32.99 1.94
316 550 4.553330 AAAGAACGACCCATGAGTACAT 57.447 40.909 0.00 0.00 37.19 2.29
365 599 4.529769 TGCTAGATCCAGACCCAGAATATG 59.470 45.833 0.00 0.00 0.00 1.78
376 610 1.132913 AGATGGGCTGCTAGATCCAGA 60.133 52.381 0.00 0.00 32.30 3.86
388 622 0.613012 GGCTTTGGTTGAGATGGGCT 60.613 55.000 0.00 0.00 0.00 5.19
417 651 4.415150 AGGGTCATGCCAGCCGTG 62.415 66.667 8.20 0.00 39.10 4.94
418 652 4.101448 GAGGGTCATGCCAGCCGT 62.101 66.667 8.20 0.61 39.10 5.68
419 653 4.864334 GGAGGGTCATGCCAGCCG 62.864 72.222 8.20 0.00 39.10 5.52
420 654 1.708993 TATGGAGGGTCATGCCAGCC 61.709 60.000 8.20 1.90 39.65 4.85
424 658 1.352622 TGGGTATGGAGGGTCATGCC 61.353 60.000 3.84 3.84 45.33 4.40
428 662 1.692749 GCCTGGGTATGGAGGGTCA 60.693 63.158 0.00 0.00 0.00 4.02
435 669 1.449601 GTGTCGTGCCTGGGTATGG 60.450 63.158 0.00 0.00 0.00 2.74
463 698 2.746277 GTGTGTCGGTCATGGCCC 60.746 66.667 11.65 0.00 0.00 5.80
516 763 1.909459 TACATGGGCCGTGTCATGCT 61.909 55.000 33.54 11.94 43.12 3.79
619 870 1.137404 GCACGTTTAGCATGCTGGG 59.863 57.895 30.42 15.49 36.40 4.45
640 891 6.944643 GTTTAGTTATTAAATGGACCGGCACG 60.945 42.308 0.00 0.00 41.82 5.34
643 894 6.094464 ACAGTTTAGTTATTAAATGGACCGGC 59.906 38.462 0.00 0.00 33.99 6.13
675 926 2.936912 GCGTGCCTCACTCCTCTGT 61.937 63.158 0.00 0.00 31.34 3.41
677 928 3.753434 CGCGTGCCTCACTCCTCT 61.753 66.667 0.00 0.00 31.34 3.69
801 1052 1.623163 TTTTTCCCTAAAGCGTGGGG 58.377 50.000 5.62 5.62 43.51 4.96
851 1102 2.666022 GGATTCGGTTCAAAATTTGGCG 59.334 45.455 5.83 0.00 0.00 5.69
1200 1464 1.249469 ACGGAAGAGGAAGGACCGAC 61.249 60.000 0.00 0.00 45.31 4.79
1201 1465 0.541296 AACGGAAGAGGAAGGACCGA 60.541 55.000 0.00 0.00 45.31 4.69
1203 1467 0.108756 CGAACGGAAGAGGAAGGACC 60.109 60.000 0.00 0.00 39.35 4.46
1207 1471 1.218316 CCCCGAACGGAAGAGGAAG 59.782 63.158 15.07 0.00 37.50 3.46
1298 1570 3.908382 CGAACTGAACAGCTAACAATTGC 59.092 43.478 5.05 0.00 0.00 3.56
1745 2041 2.854253 TTCAGTTGGGCTGGAGAGT 58.146 52.632 0.00 0.00 45.08 3.24
1750 2046 2.276732 TCTTTCTTCAGTTGGGCTGG 57.723 50.000 0.00 0.00 45.08 4.85
1869 2165 5.630061 TGATGTGATATGACGTTTGCAAAG 58.370 37.500 13.26 9.42 0.00 2.77
1904 2200 9.893305 CCGTGATTCAGATTTTACTAACTTTTT 57.107 29.630 0.00 0.00 0.00 1.94
2021 2330 1.383963 TCCCTCAGACTGGACTACCT 58.616 55.000 1.81 0.00 37.04 3.08
2022 2331 2.432510 CAATCCCTCAGACTGGACTACC 59.567 54.545 1.81 0.00 32.36 3.18
2043 2352 8.910351 ATATATTGGAGCTAGGAGTTTGAAAC 57.090 34.615 0.00 0.00 0.00 2.78
2048 2357 7.164803 GCAGAATATATTGGAGCTAGGAGTTT 58.835 38.462 1.78 0.00 0.00 2.66
2091 2400 7.543172 ACAAAATCATAATGTTCACATGAGCAC 59.457 33.333 0.00 0.00 38.07 4.40
2333 2646 2.664402 ATGTCACCCATTATGGCCTC 57.336 50.000 5.57 0.00 35.79 4.70
2345 2658 6.795399 TCACAAAAAGAGAAGAAATGTCACC 58.205 36.000 0.00 0.00 0.00 4.02
2369 2685 6.373759 ACTGAAGACAAATTTAACCCCTTCT 58.626 36.000 0.00 0.00 32.27 2.85
2392 2708 5.008613 TCAGGACTTTGCATGTCAACTTTAC 59.991 40.000 18.08 3.68 36.26 2.01
2441 2757 5.047943 ACAGCTGTACTCGTCTTTATTGACT 60.048 40.000 20.16 0.00 35.00 3.41
2485 2802 9.926751 CAAACAGTATGAATATTAGACAGCTTG 57.073 33.333 0.00 0.00 39.69 4.01
2564 2883 6.459066 TCTTCAGTGTCTTTCAGTAATGGAG 58.541 40.000 0.00 0.00 0.00 3.86
2616 2935 7.602753 TGATTCTAACGAACTTGAAGAGATCA 58.397 34.615 0.00 0.00 31.45 2.92
2667 2991 9.178758 GTAGAGAAACATGGAATACCTTTGATT 57.821 33.333 0.00 0.00 37.04 2.57
2690 3014 9.573133 GGAAATGGATTTGATACAGTTTTGTAG 57.427 33.333 0.00 0.00 42.72 2.74
2692 3016 7.386059 GGGAAATGGATTTGATACAGTTTTGT 58.614 34.615 0.00 0.00 41.39 2.83
2715 3039 3.768757 TCAATTAACTGGCATTTCAGGGG 59.231 43.478 0.00 0.00 38.98 4.79
2719 3043 6.148948 CGAAACTCAATTAACTGGCATTTCA 58.851 36.000 0.00 0.00 0.00 2.69
2781 3106 5.233689 GGTACATACAGAGAACGTTATTGCC 59.766 44.000 0.00 0.00 0.00 4.52
2804 3129 6.376018 TGGTGGAAATTTAGGAAAATACTCGG 59.624 38.462 0.00 0.00 34.12 4.63
2814 3140 7.610580 AAAACAGATTGGTGGAAATTTAGGA 57.389 32.000 0.00 0.00 0.00 2.94
2842 3171 0.519586 CGAGTTCTCGACGCTCAGTC 60.520 60.000 15.87 0.00 46.16 3.51
2849 3178 2.094575 AGTTCATCTCGAGTTCTCGACG 59.905 50.000 18.89 14.93 37.20 5.12
2857 3186 3.018149 GACAGGGTAGTTCATCTCGAGT 58.982 50.000 13.13 0.00 0.00 4.18
2858 3187 3.066064 CAGACAGGGTAGTTCATCTCGAG 59.934 52.174 5.93 5.93 0.00 4.04
2859 3188 3.017442 CAGACAGGGTAGTTCATCTCGA 58.983 50.000 0.00 0.00 0.00 4.04
2860 3189 2.755655 ACAGACAGGGTAGTTCATCTCG 59.244 50.000 0.00 0.00 0.00 4.04
2861 3190 5.594725 TCATACAGACAGGGTAGTTCATCTC 59.405 44.000 0.00 0.00 0.00 2.75
2862 3191 5.519808 TCATACAGACAGGGTAGTTCATCT 58.480 41.667 0.00 0.00 0.00 2.90
2863 3192 5.854010 TCATACAGACAGGGTAGTTCATC 57.146 43.478 0.00 0.00 0.00 2.92
2864 3193 5.070981 CCATCATACAGACAGGGTAGTTCAT 59.929 44.000 0.00 0.00 0.00 2.57
2866 3195 4.202264 CCCATCATACAGACAGGGTAGTTC 60.202 50.000 0.00 0.00 39.15 3.01
2868 3197 3.052109 TCCCATCATACAGACAGGGTAGT 60.052 47.826 0.00 0.00 42.69 2.73
2869 3198 3.576118 CTCCCATCATACAGACAGGGTAG 59.424 52.174 0.00 0.00 42.69 3.18
2870 3199 3.576861 CTCCCATCATACAGACAGGGTA 58.423 50.000 0.00 0.00 42.69 3.69
2871 3200 2.402564 CTCCCATCATACAGACAGGGT 58.597 52.381 0.00 0.00 42.69 4.34
2872 3201 1.696336 CCTCCCATCATACAGACAGGG 59.304 57.143 0.00 0.00 43.21 4.45
2873 3202 1.071385 GCCTCCCATCATACAGACAGG 59.929 57.143 0.00 0.00 0.00 4.00
2874 3203 2.045524 AGCCTCCCATCATACAGACAG 58.954 52.381 0.00 0.00 0.00 3.51
2931 3268 4.385825 ACAGACACAACGGTACAATTCAT 58.614 39.130 0.00 0.00 0.00 2.57
3019 3361 3.571401 CAGCAAAATGAAGTGGAGTTCCT 59.429 43.478 0.00 0.00 36.82 3.36
3062 3404 8.702163 TTTTCAGTTCAAAATCCTTGAAGTTC 57.298 30.769 5.09 0.00 39.34 3.01
3104 3446 5.068987 ACTTTGGCATTTCTTTCAGTTAGCA 59.931 36.000 0.00 0.00 0.00 3.49
3167 3536 9.489084 GTACCATGTTCAGTATTGCTCATTATA 57.511 33.333 0.00 0.00 0.00 0.98
3241 3610 6.663093 ACATTTACAACTCCAAATGGCAGATA 59.337 34.615 10.71 0.00 43.36 1.98
3246 3615 3.679502 GCACATTTACAACTCCAAATGGC 59.320 43.478 10.71 7.83 43.36 4.40
3251 3620 2.954989 TGCAGCACATTTACAACTCCAA 59.045 40.909 0.00 0.00 0.00 3.53
3284 3653 7.519032 AGCAGAACTCTCTATAACTGGTATC 57.481 40.000 0.00 0.00 35.01 2.24
3291 3665 7.540299 ACAGTACAAGCAGAACTCTCTATAAC 58.460 38.462 0.00 0.00 0.00 1.89
3556 3931 1.985159 TGTACCCAGGGGATGATATGC 59.015 52.381 11.37 0.00 38.96 3.14
3605 3990 3.829948 CCAACACTATTTTGCTGCTCTG 58.170 45.455 0.00 0.00 0.00 3.35
3627 4012 2.564771 ACCCATGTTGATACATCAGCG 58.435 47.619 2.25 0.00 43.07 5.18
3742 4130 3.471680 GATGAGGGCCATCTAAACTGTC 58.528 50.000 19.75 1.99 46.33 3.51
3774 4162 3.807622 TCTTGTTCAGTTTGCCTTACTCG 59.192 43.478 0.00 0.00 0.00 4.18
3856 4245 5.600484 AGGACCAGAAACTATCTATGGACAG 59.400 44.000 0.00 0.00 36.32 3.51
3857 4246 5.529289 AGGACCAGAAACTATCTATGGACA 58.471 41.667 0.00 0.00 36.32 4.02
3858 4247 5.836358 AGAGGACCAGAAACTATCTATGGAC 59.164 44.000 0.00 0.00 36.32 4.02
3864 4253 5.087323 TGTTGAGAGGACCAGAAACTATCT 58.913 41.667 0.00 0.00 39.68 1.98
3865 4254 5.407407 TGTTGAGAGGACCAGAAACTATC 57.593 43.478 0.00 0.00 0.00 2.08
3866 4255 6.176183 CAATGTTGAGAGGACCAGAAACTAT 58.824 40.000 0.00 0.00 0.00 2.12
3870 4259 3.149196 GCAATGTTGAGAGGACCAGAAA 58.851 45.455 0.00 0.00 0.00 2.52
3927 4316 2.572243 GTCGAAGATATACTGGACGCG 58.428 52.381 3.53 3.53 40.67 6.01
3930 4319 3.664798 CGCTCGTCGAAGATATACTGGAC 60.665 52.174 0.35 0.00 40.67 4.02
3933 4322 2.096169 AGCGCTCGTCGAAGATATACTG 60.096 50.000 2.64 0.00 40.67 2.74
4084 4475 3.377172 GGCCGAATAAATAGCACACAGTT 59.623 43.478 0.00 0.00 0.00 3.16
4121 4512 3.135530 GTCCCTCTGCATCAGAAATAGGT 59.864 47.826 0.00 0.00 40.18 3.08
4150 4541 4.208686 GGGCGCTGAGGACTACCG 62.209 72.222 7.64 0.00 41.83 4.02
4152 4543 2.010582 CTGAGGGCGCTGAGGACTAC 62.011 65.000 8.56 0.00 0.00 2.73
4153 4544 1.754621 CTGAGGGCGCTGAGGACTA 60.755 63.158 8.56 0.00 0.00 2.59
4154 4545 3.073735 CTGAGGGCGCTGAGGACT 61.074 66.667 8.56 0.00 0.00 3.85
4155 4546 4.828925 GCTGAGGGCGCTGAGGAC 62.829 72.222 18.46 0.00 0.00 3.85
4174 4565 1.883084 CGCCAAGTAGCCTAAGCGG 60.883 63.158 0.00 0.00 46.67 5.52
4175 4566 2.526120 GCGCCAAGTAGCCTAAGCG 61.526 63.158 0.00 0.00 46.67 4.68
4176 4567 1.153349 AGCGCCAAGTAGCCTAAGC 60.153 57.895 2.29 0.00 40.32 3.09
4177 4568 0.872021 CGAGCGCCAAGTAGCCTAAG 60.872 60.000 2.29 0.00 0.00 2.18
4178 4569 1.141019 CGAGCGCCAAGTAGCCTAA 59.859 57.895 2.29 0.00 0.00 2.69
4179 4570 1.317431 TTCGAGCGCCAAGTAGCCTA 61.317 55.000 2.29 0.00 0.00 3.93
4180 4571 2.564553 CTTCGAGCGCCAAGTAGCCT 62.565 60.000 2.29 0.00 0.00 4.58
4181 4572 2.125673 TTCGAGCGCCAAGTAGCC 60.126 61.111 2.29 0.00 0.00 3.93
4182 4573 2.167861 CCTTCGAGCGCCAAGTAGC 61.168 63.158 2.29 0.00 0.00 3.58
4183 4574 2.167861 GCCTTCGAGCGCCAAGTAG 61.168 63.158 2.29 0.00 0.00 2.57
4184 4575 2.125673 GCCTTCGAGCGCCAAGTA 60.126 61.111 2.29 0.00 0.00 2.24
4191 4582 3.356639 TACTGCTGGCCTTCGAGCG 62.357 63.158 3.32 3.81 38.09 5.03
4192 4583 1.520342 CTACTGCTGGCCTTCGAGC 60.520 63.158 3.32 4.81 35.65 5.03
4193 4584 0.459237 CACTACTGCTGGCCTTCGAG 60.459 60.000 3.32 0.00 0.00 4.04
4194 4585 1.591703 CACTACTGCTGGCCTTCGA 59.408 57.895 3.32 0.00 0.00 3.71
4195 4586 1.448540 CCACTACTGCTGGCCTTCG 60.449 63.158 3.32 0.00 0.00 3.79
4196 4587 1.078143 CCCACTACTGCTGGCCTTC 60.078 63.158 3.32 0.00 0.00 3.46
4197 4588 3.081554 CCCACTACTGCTGGCCTT 58.918 61.111 3.32 0.00 0.00 4.35
4198 4589 3.721706 GCCCACTACTGCTGGCCT 61.722 66.667 3.32 0.00 37.94 5.19
4201 4592 4.473520 CCGGCCCACTACTGCTGG 62.474 72.222 0.00 0.00 46.84 4.85
4205 4596 4.473520 CTGGCCGGCCCACTACTG 62.474 72.222 41.75 18.53 39.18 2.74
4213 4604 4.925861 GAGAGATGCTGGCCGGCC 62.926 72.222 39.40 39.40 0.00 6.13
4216 4607 3.804153 ATGCGAGAGATGCTGGCCG 62.804 63.158 0.00 0.00 46.54 6.13
4217 4608 1.960250 GATGCGAGAGATGCTGGCC 60.960 63.158 0.00 0.00 46.54 5.36
4219 4610 0.600518 CTGGATGCGAGAGATGCTGG 60.601 60.000 0.00 0.00 0.00 4.85
4220 4611 1.222766 GCTGGATGCGAGAGATGCTG 61.223 60.000 0.00 0.00 0.00 4.41
4221 4612 1.069427 GCTGGATGCGAGAGATGCT 59.931 57.895 0.00 0.00 0.00 3.79
4222 4613 0.812811 TTGCTGGATGCGAGAGATGC 60.813 55.000 0.00 0.00 46.63 3.91
4223 4614 3.374506 TTGCTGGATGCGAGAGATG 57.625 52.632 0.00 0.00 46.63 2.90
4229 4620 1.603456 TTTGTTCTTGCTGGATGCGA 58.397 45.000 0.00 0.00 46.63 5.10
4230 4621 2.420628 TTTTGTTCTTGCTGGATGCG 57.579 45.000 0.00 0.00 46.63 4.73
4231 4622 4.563061 AGATTTTTGTTCTTGCTGGATGC 58.437 39.130 0.00 0.00 43.25 3.91
4232 4623 6.218019 TGAAGATTTTTGTTCTTGCTGGATG 58.782 36.000 0.00 0.00 33.65 3.51
4233 4624 6.409524 TGAAGATTTTTGTTCTTGCTGGAT 57.590 33.333 0.00 0.00 33.65 3.41
4234 4625 5.737063 GCTGAAGATTTTTGTTCTTGCTGGA 60.737 40.000 0.00 0.00 33.65 3.86
4235 4626 4.446719 GCTGAAGATTTTTGTTCTTGCTGG 59.553 41.667 0.00 0.00 33.65 4.85
4236 4627 5.287226 AGCTGAAGATTTTTGTTCTTGCTG 58.713 37.500 0.00 0.00 34.41 4.41
4237 4628 5.526506 AGCTGAAGATTTTTGTTCTTGCT 57.473 34.783 0.00 0.00 33.65 3.91
4238 4629 6.594284 AAAGCTGAAGATTTTTGTTCTTGC 57.406 33.333 0.00 0.00 33.65 4.01
4248 4639 9.538508 GCAATGGAATAATAAAGCTGAAGATTT 57.461 29.630 0.00 0.00 37.43 2.17
4249 4640 7.864379 CGCAATGGAATAATAAAGCTGAAGATT 59.136 33.333 0.00 0.00 0.00 2.40
4250 4641 7.013655 ACGCAATGGAATAATAAAGCTGAAGAT 59.986 33.333 0.00 0.00 0.00 2.40
4251 4642 6.318648 ACGCAATGGAATAATAAAGCTGAAGA 59.681 34.615 0.00 0.00 0.00 2.87
4252 4643 6.498304 ACGCAATGGAATAATAAAGCTGAAG 58.502 36.000 0.00 0.00 0.00 3.02
4253 4644 6.449635 ACGCAATGGAATAATAAAGCTGAA 57.550 33.333 0.00 0.00 0.00 3.02
4254 4645 6.449635 AACGCAATGGAATAATAAAGCTGA 57.550 33.333 0.00 0.00 0.00 4.26
4255 4646 7.275341 TGAAAACGCAATGGAATAATAAAGCTG 59.725 33.333 0.00 0.00 0.00 4.24
4256 4647 7.319646 TGAAAACGCAATGGAATAATAAAGCT 58.680 30.769 0.00 0.00 0.00 3.74
4257 4648 7.518731 TGAAAACGCAATGGAATAATAAAGC 57.481 32.000 0.00 0.00 0.00 3.51
4261 4652 9.482627 ACTTTTTGAAAACGCAATGGAATAATA 57.517 25.926 0.00 0.00 0.00 0.98
4262 4653 8.376889 ACTTTTTGAAAACGCAATGGAATAAT 57.623 26.923 0.00 0.00 0.00 1.28
4263 4654 7.778470 ACTTTTTGAAAACGCAATGGAATAA 57.222 28.000 0.00 0.00 0.00 1.40
4264 4655 7.492669 TGAACTTTTTGAAAACGCAATGGAATA 59.507 29.630 0.00 0.00 0.00 1.75
4265 4656 6.314896 TGAACTTTTTGAAAACGCAATGGAAT 59.685 30.769 0.00 0.00 0.00 3.01
4266 4657 5.639506 TGAACTTTTTGAAAACGCAATGGAA 59.360 32.000 0.00 0.00 0.00 3.53
4267 4658 5.171476 TGAACTTTTTGAAAACGCAATGGA 58.829 33.333 0.00 0.00 0.00 3.41
4268 4659 5.462034 TGAACTTTTTGAAAACGCAATGG 57.538 34.783 0.00 0.00 0.00 3.16
4269 4660 7.178741 TCAATGAACTTTTTGAAAACGCAATG 58.821 30.769 0.00 0.00 0.00 2.82
4270 4661 7.301068 TCAATGAACTTTTTGAAAACGCAAT 57.699 28.000 0.00 0.00 0.00 3.56
4271 4662 6.712241 TCAATGAACTTTTTGAAAACGCAA 57.288 29.167 0.00 0.00 0.00 4.85
4272 4663 6.900568 ATCAATGAACTTTTTGAAAACGCA 57.099 29.167 0.00 0.00 35.63 5.24
4273 4664 7.902403 TCAAATCAATGAACTTTTTGAAAACGC 59.098 29.630 7.14 0.00 35.63 4.84
4274 4665 9.752274 TTCAAATCAATGAACTTTTTGAAAACG 57.248 25.926 15.80 0.00 41.03 3.60
4285 4676 9.919348 CAACGAAAATTTTCAAATCAATGAACT 57.081 25.926 26.20 0.00 38.95 3.01
4286 4677 9.913451 TCAACGAAAATTTTCAAATCAATGAAC 57.087 25.926 26.20 0.46 38.95 3.18
4303 4694 9.535270 GTGAACATTTTTCAAAATCAACGAAAA 57.465 25.926 0.00 0.00 36.52 2.29
4304 4695 8.171840 GGTGAACATTTTTCAAAATCAACGAAA 58.828 29.630 0.00 0.00 36.52 3.46
4305 4696 7.547370 AGGTGAACATTTTTCAAAATCAACGAA 59.453 29.630 0.00 0.00 36.52 3.85
4306 4697 7.038659 AGGTGAACATTTTTCAAAATCAACGA 58.961 30.769 0.00 0.00 36.52 3.85
4307 4698 7.232945 AGGTGAACATTTTTCAAAATCAACG 57.767 32.000 0.00 0.00 36.52 4.10
4308 4699 9.838975 AAAAGGTGAACATTTTTCAAAATCAAC 57.161 25.926 0.26 0.00 36.59 3.18
4310 4701 9.837525 CAAAAAGGTGAACATTTTTCAAAATCA 57.162 25.926 13.81 0.00 44.65 2.57
4311 4702 9.838975 ACAAAAAGGTGAACATTTTTCAAAATC 57.161 25.926 13.81 0.00 44.65 2.17
4343 4734 9.449719 GGACCTTTCTCAAAATAGATGAACTTA 57.550 33.333 0.00 0.00 0.00 2.24
4344 4735 7.944554 TGGACCTTTCTCAAAATAGATGAACTT 59.055 33.333 0.00 0.00 0.00 2.66
4345 4736 7.391833 GTGGACCTTTCTCAAAATAGATGAACT 59.608 37.037 0.00 0.00 0.00 3.01
4346 4737 7.174946 TGTGGACCTTTCTCAAAATAGATGAAC 59.825 37.037 0.00 0.00 0.00 3.18
4347 4738 7.230747 TGTGGACCTTTCTCAAAATAGATGAA 58.769 34.615 0.00 0.00 0.00 2.57
4348 4739 6.778821 TGTGGACCTTTCTCAAAATAGATGA 58.221 36.000 0.00 0.00 0.00 2.92
4349 4740 7.452880 TTGTGGACCTTTCTCAAAATAGATG 57.547 36.000 0.00 0.00 0.00 2.90
4350 4741 8.655935 AATTGTGGACCTTTCTCAAAATAGAT 57.344 30.769 0.00 0.00 0.00 1.98
4351 4742 8.477419 AAATTGTGGACCTTTCTCAAAATAGA 57.523 30.769 0.00 0.00 0.00 1.98
4352 4743 9.546428 AAAAATTGTGGACCTTTCTCAAAATAG 57.454 29.630 0.00 0.00 0.00 1.73
4387 4778 9.709495 CCAAATCCATGACTTTTTCAAAATCTA 57.291 29.630 0.00 0.00 37.92 1.98
4388 4779 8.431222 TCCAAATCCATGACTTTTTCAAAATCT 58.569 29.630 0.00 0.00 37.92 2.40
4389 4780 8.606040 TCCAAATCCATGACTTTTTCAAAATC 57.394 30.769 0.00 0.00 37.92 2.17
4390 4781 8.977267 TTCCAAATCCATGACTTTTTCAAAAT 57.023 26.923 0.00 0.00 37.92 1.82
4391 4782 8.798859 TTTCCAAATCCATGACTTTTTCAAAA 57.201 26.923 0.00 0.00 37.92 2.44
4392 4783 8.798859 TTTTCCAAATCCATGACTTTTTCAAA 57.201 26.923 0.00 0.00 37.92 2.69
4393 4784 8.798859 TTTTTCCAAATCCATGACTTTTTCAA 57.201 26.923 0.00 0.00 37.92 2.69
4455 4846 9.996554 TTTCTTTTGTTTTTCCTTTCTTTCTCT 57.003 25.926 0.00 0.00 0.00 3.10
4461 4852 8.668353 GCTGATTTTCTTTTGTTTTTCCTTTCT 58.332 29.630 0.00 0.00 0.00 2.52
4462 4853 7.910162 GGCTGATTTTCTTTTGTTTTTCCTTTC 59.090 33.333 0.00 0.00 0.00 2.62
4463 4854 7.392953 TGGCTGATTTTCTTTTGTTTTTCCTTT 59.607 29.630 0.00 0.00 0.00 3.11
4464 4855 6.883756 TGGCTGATTTTCTTTTGTTTTTCCTT 59.116 30.769 0.00 0.00 0.00 3.36
4465 4856 6.413892 TGGCTGATTTTCTTTTGTTTTTCCT 58.586 32.000 0.00 0.00 0.00 3.36
4466 4857 6.676237 TGGCTGATTTTCTTTTGTTTTTCC 57.324 33.333 0.00 0.00 0.00 3.13
4467 4858 7.973601 TCTTGGCTGATTTTCTTTTGTTTTTC 58.026 30.769 0.00 0.00 0.00 2.29
4468 4859 7.920160 TCTTGGCTGATTTTCTTTTGTTTTT 57.080 28.000 0.00 0.00 0.00 1.94
4469 4860 7.920160 TTCTTGGCTGATTTTCTTTTGTTTT 57.080 28.000 0.00 0.00 0.00 2.43
4470 4861 7.920160 TTTCTTGGCTGATTTTCTTTTGTTT 57.080 28.000 0.00 0.00 0.00 2.83
4471 4862 7.920160 TTTTCTTGGCTGATTTTCTTTTGTT 57.080 28.000 0.00 0.00 0.00 2.83
4472 4863 7.148255 GGTTTTTCTTGGCTGATTTTCTTTTGT 60.148 33.333 0.00 0.00 0.00 2.83
4473 4864 7.188834 GGTTTTTCTTGGCTGATTTTCTTTTG 58.811 34.615 0.00 0.00 0.00 2.44
4474 4865 6.037062 CGGTTTTTCTTGGCTGATTTTCTTTT 59.963 34.615 0.00 0.00 0.00 2.27
4475 4866 5.523552 CGGTTTTTCTTGGCTGATTTTCTTT 59.476 36.000 0.00 0.00 0.00 2.52
4476 4867 5.049828 CGGTTTTTCTTGGCTGATTTTCTT 58.950 37.500 0.00 0.00 0.00 2.52
4477 4868 4.340950 TCGGTTTTTCTTGGCTGATTTTCT 59.659 37.500 0.00 0.00 0.00 2.52
4478 4869 4.616953 TCGGTTTTTCTTGGCTGATTTTC 58.383 39.130 0.00 0.00 0.00 2.29
4479 4870 4.664150 TCGGTTTTTCTTGGCTGATTTT 57.336 36.364 0.00 0.00 0.00 1.82
4480 4871 4.664150 TTCGGTTTTTCTTGGCTGATTT 57.336 36.364 0.00 0.00 0.00 2.17
4481 4872 4.664150 TTTCGGTTTTTCTTGGCTGATT 57.336 36.364 0.00 0.00 0.00 2.57
4482 4873 4.664150 TTTTCGGTTTTTCTTGGCTGAT 57.336 36.364 0.00 0.00 0.00 2.90
4483 4874 4.457834 TTTTTCGGTTTTTCTTGGCTGA 57.542 36.364 0.00 0.00 0.00 4.26
4484 4875 5.049828 AGATTTTTCGGTTTTTCTTGGCTG 58.950 37.500 0.00 0.00 0.00 4.85
4485 4876 5.049828 CAGATTTTTCGGTTTTTCTTGGCT 58.950 37.500 0.00 0.00 0.00 4.75
4486 4877 4.318760 GCAGATTTTTCGGTTTTTCTTGGC 60.319 41.667 0.00 0.00 0.00 4.52
4487 4878 4.211164 GGCAGATTTTTCGGTTTTTCTTGG 59.789 41.667 0.00 0.00 0.00 3.61
4488 4879 4.808364 TGGCAGATTTTTCGGTTTTTCTTG 59.192 37.500 0.00 0.00 0.00 3.02
4489 4880 5.017294 TGGCAGATTTTTCGGTTTTTCTT 57.983 34.783 0.00 0.00 0.00 2.52
4490 4881 4.664150 TGGCAGATTTTTCGGTTTTTCT 57.336 36.364 0.00 0.00 0.00 2.52
4491 4882 4.987912 TCATGGCAGATTTTTCGGTTTTTC 59.012 37.500 0.00 0.00 0.00 2.29
4492 4883 4.954875 TCATGGCAGATTTTTCGGTTTTT 58.045 34.783 0.00 0.00 0.00 1.94
4493 4884 4.599047 TCATGGCAGATTTTTCGGTTTT 57.401 36.364 0.00 0.00 0.00 2.43
4494 4885 4.599047 TTCATGGCAGATTTTTCGGTTT 57.401 36.364 0.00 0.00 0.00 3.27
4495 4886 4.599047 TTTCATGGCAGATTTTTCGGTT 57.401 36.364 0.00 0.00 0.00 4.44
4496 4887 4.599047 TTTTCATGGCAGATTTTTCGGT 57.401 36.364 0.00 0.00 0.00 4.69
4515 4906 4.526650 ACTGGCCGATATTCTTTGGTTTTT 59.473 37.500 0.00 0.00 0.00 1.94
4516 4907 4.086457 ACTGGCCGATATTCTTTGGTTTT 58.914 39.130 0.00 0.00 0.00 2.43
4517 4908 3.697166 ACTGGCCGATATTCTTTGGTTT 58.303 40.909 0.00 0.00 0.00 3.27
4518 4909 3.366052 ACTGGCCGATATTCTTTGGTT 57.634 42.857 0.00 0.00 0.00 3.67
4519 4910 3.366052 AACTGGCCGATATTCTTTGGT 57.634 42.857 0.00 0.00 0.00 3.67
4520 4911 5.765182 AGATTAACTGGCCGATATTCTTTGG 59.235 40.000 0.00 0.00 0.00 3.28
4521 4912 6.662616 CAGATTAACTGGCCGATATTCTTTG 58.337 40.000 0.00 0.00 42.39 2.77
4522 4913 6.867662 CAGATTAACTGGCCGATATTCTTT 57.132 37.500 0.00 0.00 42.39 2.52
4535 4926 1.922570 CGACGGACCCAGATTAACTG 58.077 55.000 0.00 0.00 45.36 3.16
4536 4927 0.175073 GCGACGGACCCAGATTAACT 59.825 55.000 0.00 0.00 0.00 2.24
4537 4928 0.108520 TGCGACGGACCCAGATTAAC 60.109 55.000 0.00 0.00 0.00 2.01
4538 4929 0.174845 CTGCGACGGACCCAGATTAA 59.825 55.000 0.00 0.00 0.00 1.40
4539 4930 0.681887 TCTGCGACGGACCCAGATTA 60.682 55.000 0.00 0.00 31.16 1.75
4540 4931 1.541310 TTCTGCGACGGACCCAGATT 61.541 55.000 4.14 0.00 35.72 2.40
4541 4932 1.541310 TTTCTGCGACGGACCCAGAT 61.541 55.000 4.14 0.00 35.72 2.90
4542 4933 1.750341 TTTTCTGCGACGGACCCAGA 61.750 55.000 0.00 0.00 34.07 3.86
4543 4934 0.882927 TTTTTCTGCGACGGACCCAG 60.883 55.000 0.00 0.00 0.00 4.45
4544 4935 1.146485 TTTTTCTGCGACGGACCCA 59.854 52.632 0.00 0.00 0.00 4.51
4545 4936 4.052519 TTTTTCTGCGACGGACCC 57.947 55.556 0.00 0.00 0.00 4.46
4562 4953 8.888716 GGGAAAAACATAAGTGAAAAATGTGTT 58.111 29.630 0.00 0.00 33.47 3.32
4563 4954 8.043710 TGGGAAAAACATAAGTGAAAAATGTGT 58.956 29.630 0.00 0.00 34.20 3.72
4564 4955 8.430801 TGGGAAAAACATAAGTGAAAAATGTG 57.569 30.769 0.00 0.00 34.20 3.21
4565 4956 9.454859 TTTGGGAAAAACATAAGTGAAAAATGT 57.545 25.926 0.00 0.00 35.40 2.71
4568 4959 8.731605 GGTTTTGGGAAAAACATAAGTGAAAAA 58.268 29.630 14.12 0.00 42.73 1.94
4569 4960 8.103935 AGGTTTTGGGAAAAACATAAGTGAAAA 58.896 29.630 14.12 0.00 42.73 2.29
4570 4961 7.625469 AGGTTTTGGGAAAAACATAAGTGAAA 58.375 30.769 14.12 0.00 42.73 2.69
4571 4962 7.189079 AGGTTTTGGGAAAAACATAAGTGAA 57.811 32.000 14.12 0.00 42.73 3.18
4572 4963 6.800072 AGGTTTTGGGAAAAACATAAGTGA 57.200 33.333 14.12 0.00 42.73 3.41
4581 4972 7.459234 TGGTTTTTCTTAGGTTTTGGGAAAAA 58.541 30.769 0.00 0.00 40.88 1.94
4582 4973 7.017319 TGGTTTTTCTTAGGTTTTGGGAAAA 57.983 32.000 0.00 0.00 35.16 2.29
4583 4974 6.352308 CCTGGTTTTTCTTAGGTTTTGGGAAA 60.352 38.462 0.00 0.00 0.00 3.13
4584 4975 5.129650 CCTGGTTTTTCTTAGGTTTTGGGAA 59.870 40.000 0.00 0.00 0.00 3.97
4585 4976 4.651962 CCTGGTTTTTCTTAGGTTTTGGGA 59.348 41.667 0.00 0.00 0.00 4.37
4586 4977 4.202315 CCCTGGTTTTTCTTAGGTTTTGGG 60.202 45.833 0.00 0.00 0.00 4.12
4587 4978 4.651962 TCCCTGGTTTTTCTTAGGTTTTGG 59.348 41.667 0.00 0.00 0.00 3.28
4588 4979 5.862678 TCCCTGGTTTTTCTTAGGTTTTG 57.137 39.130 0.00 0.00 0.00 2.44
4589 4980 6.877668 TTTCCCTGGTTTTTCTTAGGTTTT 57.122 33.333 0.00 0.00 0.00 2.43
4590 4981 7.787904 AGTATTTCCCTGGTTTTTCTTAGGTTT 59.212 33.333 0.00 0.00 0.00 3.27
4591 4982 7.232737 CAGTATTTCCCTGGTTTTTCTTAGGTT 59.767 37.037 0.00 0.00 0.00 3.50
4592 4983 6.719829 CAGTATTTCCCTGGTTTTTCTTAGGT 59.280 38.462 0.00 0.00 0.00 3.08
4593 4984 6.152831 CCAGTATTTCCCTGGTTTTTCTTAGG 59.847 42.308 0.00 0.00 43.73 2.69
4594 4985 7.158099 CCAGTATTTCCCTGGTTTTTCTTAG 57.842 40.000 0.00 0.00 43.73 2.18
4605 4996 6.648879 TTGTCTTTTTCCAGTATTTCCCTG 57.351 37.500 0.00 0.00 0.00 4.45
4606 4997 7.669089 TTTTGTCTTTTTCCAGTATTTCCCT 57.331 32.000 0.00 0.00 0.00 4.20
4628 5019 8.127954 ACGCATTTTTGCATTTTAGATGTTTTT 58.872 25.926 0.00 0.00 34.41 1.94
4629 5020 7.638134 ACGCATTTTTGCATTTTAGATGTTTT 58.362 26.923 0.00 0.00 34.41 2.43
4630 5021 7.188468 ACGCATTTTTGCATTTTAGATGTTT 57.812 28.000 0.00 0.00 34.41 2.83
4631 5022 6.783892 ACGCATTTTTGCATTTTAGATGTT 57.216 29.167 0.00 0.00 34.41 2.71
4632 5023 6.865726 TGTACGCATTTTTGCATTTTAGATGT 59.134 30.769 0.00 0.00 34.41 3.06
4633 5024 7.273164 TCTGTACGCATTTTTGCATTTTAGATG 59.727 33.333 0.00 0.00 34.41 2.90
4634 5025 7.312154 TCTGTACGCATTTTTGCATTTTAGAT 58.688 30.769 0.00 0.00 34.41 1.98
4635 5026 6.673106 TCTGTACGCATTTTTGCATTTTAGA 58.327 32.000 0.00 0.00 34.41 2.10
4636 5027 6.926280 TCTGTACGCATTTTTGCATTTTAG 57.074 33.333 0.00 0.00 34.41 1.85
4637 5028 7.700322 TTTCTGTACGCATTTTTGCATTTTA 57.300 28.000 0.00 0.00 34.41 1.52
4638 5029 6.595772 TTTCTGTACGCATTTTTGCATTTT 57.404 29.167 0.00 0.00 34.41 1.82
4639 5030 6.595772 TTTTCTGTACGCATTTTTGCATTT 57.404 29.167 0.00 0.00 34.41 2.32
4640 5031 6.595772 TTTTTCTGTACGCATTTTTGCATT 57.404 29.167 0.00 0.00 34.41 3.56
4662 5053 0.521735 GGCGCTCCGTTCAGATTTTT 59.478 50.000 7.64 0.00 0.00 1.94
4663 5054 1.305930 GGGCGCTCCGTTCAGATTTT 61.306 55.000 7.64 0.00 0.00 1.82
4664 5055 1.745489 GGGCGCTCCGTTCAGATTT 60.745 57.895 7.64 0.00 0.00 2.17
4665 5056 2.125106 GGGCGCTCCGTTCAGATT 60.125 61.111 7.64 0.00 0.00 2.40
4666 5057 4.162690 GGGGCGCTCCGTTCAGAT 62.163 66.667 12.52 0.00 36.01 2.90
4668 5059 4.821589 GAGGGGCGCTCCGTTCAG 62.822 72.222 23.34 0.00 36.01 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.