Multiple sequence alignment - TraesCS3A01G529300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G529300 chr3A 100.000 4575 0 0 1 4575 742878400 742873826 0.000000e+00 8449.0
1 TraesCS3A01G529300 chr3A 92.941 85 2 4 3154 3234 742875209 742875125 2.240000e-23 121.0
2 TraesCS3A01G529300 chr3A 92.941 85 2 4 3192 3276 742875247 742875167 2.240000e-23 121.0
3 TraesCS3A01G529300 chr3A 98.276 58 1 0 2149 2206 75541439 75541496 8.100000e-18 102.0
4 TraesCS3A01G529300 chr3A 98.246 57 1 0 2150 2206 7901212 7901268 2.910000e-17 100.0
5 TraesCS3A01G529300 chr3A 96.667 60 2 0 2149 2208 33641200 33641141 2.910000e-17 100.0
6 TraesCS3A01G529300 chr3A 98.214 56 1 0 2149 2204 655879383 655879438 1.050000e-16 99.0
7 TraesCS3A01G529300 chr3D 94.061 1549 59 10 602 2148 609292367 609290850 0.000000e+00 2320.0
8 TraesCS3A01G529300 chr3D 86.758 1163 128 16 3266 4406 609289446 609288288 0.000000e+00 1271.0
9 TraesCS3A01G529300 chr3D 94.436 683 37 1 2518 3200 609290136 609289455 0.000000e+00 1050.0
10 TraesCS3A01G529300 chr3D 95.607 387 17 0 2207 2593 609290504 609290118 5.030000e-174 621.0
11 TraesCS3A01G529300 chr3D 93.947 413 18 6 164 572 609292770 609292361 6.500000e-173 617.0
12 TraesCS3A01G529300 chr3D 92.632 95 7 0 4425 4519 609288301 609288207 2.220000e-28 137.0
13 TraesCS3A01G529300 chr3D 91.667 48 2 2 3192 3239 609289500 609289455 1.060000e-06 65.8
14 TraesCS3A01G529300 chr4B 91.262 515 34 7 914 1422 17843604 17844113 0.000000e+00 691.0
15 TraesCS3A01G529300 chr4B 79.710 345 70 0 2756 3100 666565164 666564820 2.730000e-62 250.0
16 TraesCS3A01G529300 chr3B 81.917 647 109 7 1394 2036 748989229 748989871 1.450000e-149 540.0
17 TraesCS3A01G529300 chr3B 77.953 381 82 2 2751 3130 820457940 820457561 2.130000e-58 237.0
18 TraesCS3A01G529300 chrUn 75.615 447 103 5 2756 3199 65118781 65118338 2.770000e-52 217.0
19 TraesCS3A01G529300 chrUn 75.446 448 102 7 2756 3199 134238203 134237760 1.290000e-50 211.0
20 TraesCS3A01G529300 chr5A 98.276 58 1 0 2149 2206 601150412 601150469 8.100000e-18 102.0
21 TraesCS3A01G529300 chr5A 96.552 58 2 0 2149 2206 13039060 13039003 3.770000e-16 97.1
22 TraesCS3A01G529300 chr7B 96.610 59 2 0 2149 2207 1099774 1099716 1.050000e-16 99.0
23 TraesCS3A01G529300 chr7A 95.238 63 2 1 2149 2211 8646837 8646898 1.050000e-16 99.0
24 TraesCS3A01G529300 chr7A 96.552 58 2 0 2149 2206 670916422 670916479 3.770000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G529300 chr3A 742873826 742878400 4574 True 2897.000000 8449 95.294000 1 4575 3 chr3A.!!$R2 4574
1 TraesCS3A01G529300 chr3D 609288207 609292770 4563 True 868.828571 2320 92.729714 164 4519 7 chr3D.!!$R1 4355
2 TraesCS3A01G529300 chr4B 17843604 17844113 509 False 691.000000 691 91.262000 914 1422 1 chr4B.!!$F1 508
3 TraesCS3A01G529300 chr3B 748989229 748989871 642 False 540.000000 540 81.917000 1394 2036 1 chr3B.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.043053 CACGACTTGTGCGTTGACAG 60.043 55.0 0.0 0.0 42.70 3.51 F
1478 1486 0.407139 ATCCTGAAAGCAGCCACCTT 59.593 50.0 0.0 0.0 40.91 3.50 F
2176 2185 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.0 0.0 0.0 41.75 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1646 0.039437 TCTCGTTCTCGCAGTTGACC 60.039 55.0 0.00 0.0 36.96 4.02 R
3221 3574 0.319469 GGCAATGTTTGACCCAACCG 60.319 55.0 0.00 0.0 30.38 4.44 R
3894 4250 0.036164 TGTCGACTGGAACCCCAATG 59.964 55.0 17.92 0.0 42.98 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.814899 TGCTCCATTAACATAATTATGGTTTTG 57.185 29.630 25.45 19.21 38.00 2.44
29 30 9.816354 GCTCCATTAACATAATTATGGTTTTGT 57.184 29.630 25.45 5.94 38.00 2.83
31 32 9.593134 TCCATTAACATAATTATGGTTTTGTGC 57.407 29.630 25.45 0.00 38.00 4.57
32 33 9.376075 CCATTAACATAATTATGGTTTTGTGCA 57.624 29.630 25.45 3.43 38.00 4.57
37 38 9.669887 AACATAATTATGGTTTTGTGCATCATT 57.330 25.926 25.45 6.43 38.00 2.57
40 41 9.985730 ATAATTATGGTTTTGTGCATCATTAGG 57.014 29.630 0.00 0.00 0.00 2.69
41 42 7.658525 ATTATGGTTTTGTGCATCATTAGGA 57.341 32.000 0.00 0.00 0.00 2.94
42 43 7.658525 TTATGGTTTTGTGCATCATTAGGAT 57.341 32.000 0.00 0.00 36.39 3.24
61 62 3.494378 CAAGGATGCAGACGCCAG 58.506 61.111 0.00 0.00 37.32 4.85
62 63 2.110967 CAAGGATGCAGACGCCAGG 61.111 63.158 0.00 0.00 37.32 4.45
63 64 3.335356 AAGGATGCAGACGCCAGGG 62.335 63.158 0.00 0.00 37.32 4.45
64 65 4.864334 GGATGCAGACGCCAGGGG 62.864 72.222 0.84 0.84 37.32 4.79
76 77 3.004951 CAGGGGCTGATCCTGCTT 58.995 61.111 7.56 0.00 44.29 3.91
77 78 1.153005 CAGGGGCTGATCCTGCTTC 60.153 63.158 7.56 2.01 44.29 3.86
78 79 2.194326 GGGGCTGATCCTGCTTCC 59.806 66.667 7.56 6.43 34.39 3.46
79 80 2.683465 GGGGCTGATCCTGCTTCCA 61.683 63.158 7.56 0.00 34.39 3.53
80 81 1.304282 GGGCTGATCCTGCTTCCAA 59.696 57.895 7.56 0.00 34.39 3.53
81 82 0.323725 GGGCTGATCCTGCTTCCAAA 60.324 55.000 7.56 0.00 34.39 3.28
82 83 1.549203 GGCTGATCCTGCTTCCAAAA 58.451 50.000 7.56 0.00 0.00 2.44
83 84 1.895131 GGCTGATCCTGCTTCCAAAAA 59.105 47.619 7.56 0.00 0.00 1.94
127 128 9.232473 AACTAGAAAATTAGTTGGAATGAGTCC 57.768 33.333 0.00 0.00 41.17 3.85
146 147 2.489040 TGCAGACGCGGAATAGAGA 58.511 52.632 12.47 0.00 42.97 3.10
147 148 1.032794 TGCAGACGCGGAATAGAGAT 58.967 50.000 12.47 0.00 42.97 2.75
148 149 1.269257 TGCAGACGCGGAATAGAGATG 60.269 52.381 12.47 0.00 42.97 2.90
149 150 1.269309 GCAGACGCGGAATAGAGATGT 60.269 52.381 12.47 0.00 0.00 3.06
150 151 2.799917 GCAGACGCGGAATAGAGATGTT 60.800 50.000 12.47 0.00 0.00 2.71
151 152 3.448686 CAGACGCGGAATAGAGATGTTT 58.551 45.455 12.47 0.00 0.00 2.83
152 153 3.865745 CAGACGCGGAATAGAGATGTTTT 59.134 43.478 12.47 0.00 0.00 2.43
153 154 4.330074 CAGACGCGGAATAGAGATGTTTTT 59.670 41.667 12.47 0.00 0.00 1.94
154 155 4.330074 AGACGCGGAATAGAGATGTTTTTG 59.670 41.667 12.47 0.00 0.00 2.44
155 156 4.000988 ACGCGGAATAGAGATGTTTTTGT 58.999 39.130 12.47 0.00 0.00 2.83
156 157 4.092968 ACGCGGAATAGAGATGTTTTTGTC 59.907 41.667 12.47 0.00 0.00 3.18
157 158 4.092821 CGCGGAATAGAGATGTTTTTGTCA 59.907 41.667 0.00 0.00 0.00 3.58
158 159 5.563842 GCGGAATAGAGATGTTTTTGTCAG 58.436 41.667 0.00 0.00 0.00 3.51
159 160 5.351465 GCGGAATAGAGATGTTTTTGTCAGA 59.649 40.000 0.00 0.00 0.00 3.27
160 161 6.128282 GCGGAATAGAGATGTTTTTGTCAGAA 60.128 38.462 0.00 0.00 0.00 3.02
161 162 7.414540 GCGGAATAGAGATGTTTTTGTCAGAAT 60.415 37.037 0.00 0.00 0.00 2.40
162 163 8.119226 CGGAATAGAGATGTTTTTGTCAGAATC 58.881 37.037 0.00 0.00 0.00 2.52
180 181 9.303537 GTCAGAATCAATACAGGTAGTAGAAAC 57.696 37.037 0.00 0.00 35.85 2.78
199 200 1.138069 ACGATGTGACCAGTGTGAACA 59.862 47.619 0.00 0.00 0.00 3.18
207 208 0.514255 CCAGTGTGAACATCTGTGCG 59.486 55.000 10.21 0.00 0.00 5.34
220 221 1.792367 TCTGTGCGAAACGAGTCAATG 59.208 47.619 0.00 0.00 0.00 2.82
231 232 1.872952 CGAGTCAATGTGTGGAGCAAA 59.127 47.619 0.00 0.00 0.00 3.68
244 245 3.131400 GTGGAGCAAAGACTAGTAGGAGG 59.869 52.174 0.00 0.00 0.00 4.30
326 327 5.993748 AAAACAACAAAGAAACCCTCTCA 57.006 34.783 0.00 0.00 31.02 3.27
327 328 5.582689 AAACAACAAAGAAACCCTCTCAG 57.417 39.130 0.00 0.00 31.02 3.35
329 330 4.455606 ACAACAAAGAAACCCTCTCAGAG 58.544 43.478 0.00 0.00 31.02 3.35
419 420 1.399089 GACTCTAGCTCCAGTCACGAC 59.601 57.143 16.62 0.00 39.17 4.34
433 434 0.043053 CACGACTTGTGCGTTGACAG 60.043 55.000 0.00 0.00 42.70 3.51
487 488 4.486125 TCTCCATGGAAAACATCATCGA 57.514 40.909 17.00 2.24 37.84 3.59
569 570 4.204799 TGTGCGAGGTGTGTATCTACTAT 58.795 43.478 0.00 0.00 0.00 2.12
570 571 4.643334 TGTGCGAGGTGTGTATCTACTATT 59.357 41.667 0.00 0.00 0.00 1.73
571 572 5.126545 TGTGCGAGGTGTGTATCTACTATTT 59.873 40.000 0.00 0.00 0.00 1.40
572 573 5.686397 GTGCGAGGTGTGTATCTACTATTTC 59.314 44.000 0.00 0.00 0.00 2.17
573 574 5.358725 TGCGAGGTGTGTATCTACTATTTCA 59.641 40.000 0.00 0.00 0.00 2.69
574 575 5.686397 GCGAGGTGTGTATCTACTATTTCAC 59.314 44.000 0.00 0.00 0.00 3.18
575 576 6.207213 CGAGGTGTGTATCTACTATTTCACC 58.793 44.000 0.00 0.00 42.72 4.02
578 579 7.108841 GGTGTGTATCTACTATTTCACCTCA 57.891 40.000 0.00 0.00 40.30 3.86
579 580 7.203910 GGTGTGTATCTACTATTTCACCTCAG 58.796 42.308 0.00 0.00 40.30 3.35
580 581 6.697892 GTGTGTATCTACTATTTCACCTCAGC 59.302 42.308 0.00 0.00 0.00 4.26
581 582 6.607600 TGTGTATCTACTATTTCACCTCAGCT 59.392 38.462 0.00 0.00 0.00 4.24
582 583 7.124298 TGTGTATCTACTATTTCACCTCAGCTT 59.876 37.037 0.00 0.00 0.00 3.74
583 584 8.630917 GTGTATCTACTATTTCACCTCAGCTTA 58.369 37.037 0.00 0.00 0.00 3.09
584 585 9.197306 TGTATCTACTATTTCACCTCAGCTTAA 57.803 33.333 0.00 0.00 0.00 1.85
622 623 4.522789 TCCTATCTTTTCTTTGCCACAACC 59.477 41.667 0.00 0.00 0.00 3.77
694 696 5.009510 CGAAATTATCACATATTGGGCCACA 59.990 40.000 5.23 0.00 0.00 4.17
695 697 5.789643 AATTATCACATATTGGGCCACAC 57.210 39.130 5.23 0.00 0.00 3.82
696 698 2.824689 ATCACATATTGGGCCACACA 57.175 45.000 5.23 0.00 0.00 3.72
697 699 1.832883 TCACATATTGGGCCACACAC 58.167 50.000 5.23 0.00 0.00 3.82
698 700 1.074566 TCACATATTGGGCCACACACA 59.925 47.619 5.23 0.00 0.00 3.72
699 701 1.202114 CACATATTGGGCCACACACAC 59.798 52.381 5.23 0.00 0.00 3.82
700 702 0.451383 CATATTGGGCCACACACACG 59.549 55.000 5.23 0.00 0.00 4.49
701 703 1.312371 ATATTGGGCCACACACACGC 61.312 55.000 5.23 0.00 0.00 5.34
907 909 4.082026 CACCCCAAGAGAATCCAATCAAAC 60.082 45.833 0.00 0.00 33.66 2.93
908 910 4.202716 ACCCCAAGAGAATCCAATCAAACT 60.203 41.667 0.00 0.00 33.66 2.66
909 911 4.774200 CCCCAAGAGAATCCAATCAAACTT 59.226 41.667 0.00 0.00 33.66 2.66
910 912 5.951747 CCCCAAGAGAATCCAATCAAACTTA 59.048 40.000 0.00 0.00 33.66 2.24
911 913 6.608808 CCCCAAGAGAATCCAATCAAACTTAT 59.391 38.462 0.00 0.00 33.66 1.73
912 914 7.124750 CCCCAAGAGAATCCAATCAAACTTATT 59.875 37.037 0.00 0.00 33.66 1.40
946 948 7.975616 TCAAACTTATTACACATCTACCCGTAC 59.024 37.037 0.00 0.00 0.00 3.67
1077 1079 5.197451 TCCATGGGAAATAGTTGCGTATTT 58.803 37.500 13.02 0.00 35.68 1.40
1247 1255 9.086336 CACAAACCACCTTTATTATATTTGCTG 57.914 33.333 0.00 0.00 30.68 4.41
1427 1435 2.095853 CCAATACACCGACAACTGATGC 59.904 50.000 0.00 0.00 0.00 3.91
1440 1448 1.421268 ACTGATGCAACTGGAGGACAA 59.579 47.619 5.86 0.00 0.00 3.18
1444 1452 2.885135 TGCAACTGGAGGACAATCAT 57.115 45.000 0.00 0.00 0.00 2.45
1478 1486 0.407139 ATCCTGAAAGCAGCCACCTT 59.593 50.000 0.00 0.00 40.91 3.50
1638 1646 3.658709 AGAGCGTTCTCTCCTTGAAAAG 58.341 45.455 0.00 0.00 46.32 2.27
1788 1796 3.315191 GGTATGGATTTAACGCACTGCAT 59.685 43.478 1.11 0.00 0.00 3.96
1843 1851 5.426504 CACTGGATTTGATAGCAGAAGAGT 58.573 41.667 0.00 0.00 0.00 3.24
1854 1862 0.108898 CAGAAGAGTCTGCCCTGTCG 60.109 60.000 0.00 0.00 44.74 4.35
1868 1876 0.315251 CTGTCGAGAGCTGTGACCAA 59.685 55.000 0.00 0.00 0.00 3.67
1874 1882 2.678324 GAGAGCTGTGACCAAGTACAC 58.322 52.381 0.00 0.00 37.51 2.90
1923 1931 9.553064 GTGATGAGGAATTATGTAGATGTTTCT 57.447 33.333 0.00 0.00 35.90 2.52
1939 1947 6.809196 AGATGTTTCTGAAAAGCTACTAGACG 59.191 38.462 4.09 0.00 0.00 4.18
1943 1951 5.700722 TCTGAAAAGCTACTAGACGTTGA 57.299 39.130 0.00 0.00 0.00 3.18
1954 1962 6.416455 GCTACTAGACGTTGATGATTCTTCTG 59.584 42.308 0.00 0.00 0.00 3.02
1959 1967 6.169094 AGACGTTGATGATTCTTCTGATGTT 58.831 36.000 0.00 0.00 0.00 2.71
1970 1978 6.358974 TTCTTCTGATGTTGGACAGTATGA 57.641 37.500 0.00 0.00 39.69 2.15
1995 2003 1.715862 ATGCTCTTCATGCTGCAGCG 61.716 55.000 32.11 19.83 45.83 5.18
2036 2044 6.879458 GGTGAGACCTGTTGAATACAAGTTAT 59.121 38.462 0.00 0.00 36.02 1.89
2077 2085 0.671781 CAGCAAACCAGAGCTAGCGT 60.672 55.000 9.55 0.00 39.50 5.07
2084 2092 2.379972 ACCAGAGCTAGCGTAGTTCAT 58.620 47.619 9.55 0.00 38.34 2.57
2148 2157 9.229784 TCTAATACTCGACGTCATTTTTCATAC 57.770 33.333 17.16 0.00 0.00 2.39
2150 2159 3.611113 ACTCGACGTCATTTTTCATACCG 59.389 43.478 17.16 0.00 0.00 4.02
2151 2160 3.577667 TCGACGTCATTTTTCATACCGT 58.422 40.909 17.16 0.00 0.00 4.83
2153 2162 5.342433 TCGACGTCATTTTTCATACCGTAT 58.658 37.500 17.16 0.00 0.00 3.06
2155 2164 5.151632 ACGTCATTTTTCATACCGTATGC 57.848 39.130 12.94 0.00 36.14 3.14
2156 2165 4.632251 ACGTCATTTTTCATACCGTATGCA 59.368 37.500 12.94 0.25 36.14 3.96
2157 2166 5.295787 ACGTCATTTTTCATACCGTATGCAT 59.704 36.000 12.94 3.79 36.14 3.96
2158 2167 5.845953 CGTCATTTTTCATACCGTATGCATC 59.154 40.000 12.94 0.00 36.14 3.91
2159 2168 6.292865 CGTCATTTTTCATACCGTATGCATCT 60.293 38.462 12.94 0.00 36.14 2.90
2161 2170 7.915397 GTCATTTTTCATACCGTATGCATCTTT 59.085 33.333 12.94 0.00 36.14 2.52
2162 2171 8.128582 TCATTTTTCATACCGTATGCATCTTTC 58.871 33.333 12.94 0.00 36.14 2.62
2164 2173 6.603237 TTTCATACCGTATGCATCTTTCTG 57.397 37.500 12.94 0.00 36.14 3.02
2166 2175 6.101650 TCATACCGTATGCATCTTTCTGAT 57.898 37.500 12.94 0.00 36.14 2.90
2175 2184 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
2176 2185 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
2177 2186 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
2179 2188 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2182 2191 4.115199 ATGCAGAGGCCGGGGAAC 62.115 66.667 2.18 0.00 40.13 3.62
2197 2206 1.796017 GGAACCACCCCTTTTCCAAA 58.204 50.000 0.00 0.00 38.98 3.28
2198 2207 2.120312 GGAACCACCCCTTTTCCAAAA 58.880 47.619 0.00 0.00 38.98 2.44
2199 2208 2.506231 GGAACCACCCCTTTTCCAAAAA 59.494 45.455 0.00 0.00 38.98 1.94
2251 2547 3.375299 GTGATACCTTGACATGCCTTCAC 59.625 47.826 0.00 0.00 0.00 3.18
2299 2595 7.495901 TGGAGTTTGTCAAATTTATCTTGCAA 58.504 30.769 0.40 0.00 0.00 4.08
2362 2658 5.116882 GTTGGAAGAACCGCTCTACATTAT 58.883 41.667 0.00 0.00 42.61 1.28
2412 2708 7.337689 ACTTGTTGCTGCTTTATTATCTCATGA 59.662 33.333 0.00 0.00 0.00 3.07
2432 2728 7.500992 TCATGAGAGTATAGACCCAACAATTC 58.499 38.462 0.00 0.00 0.00 2.17
2443 2739 1.953686 CCAACAATTCTGGACAACCGT 59.046 47.619 0.00 0.00 39.42 4.83
2482 2778 3.103738 GCAATTGTCGAGCATCACAATC 58.896 45.455 7.40 0.00 42.06 2.67
2484 2780 2.362169 TTGTCGAGCATCACAATCGA 57.638 45.000 0.00 0.00 42.71 3.59
2522 2875 6.295688 GGACTGGGTACGTAATTATGATCCAT 60.296 42.308 11.69 6.20 0.00 3.41
2543 2896 8.450578 TCCATTTTATTGAACCATGTAGCTAG 57.549 34.615 0.00 0.00 0.00 3.42
2557 2910 5.677319 TGTAGCTAGTCTTTATGGCTGTT 57.323 39.130 0.00 0.00 34.88 3.16
2570 2923 6.569179 TTATGGCTGTTCTACAAAACCTTC 57.431 37.500 0.00 0.00 0.00 3.46
2571 2924 3.219281 TGGCTGTTCTACAAAACCTTCC 58.781 45.455 0.00 0.00 0.00 3.46
2596 2949 9.658799 CCTAATCCAGTATATTGAACCATACAG 57.341 37.037 0.00 0.00 31.33 2.74
2659 3012 4.564782 TCTCATGTCAAAAGCTGATCCT 57.435 40.909 0.00 0.00 36.14 3.24
2661 3014 5.668471 TCTCATGTCAAAAGCTGATCCTAG 58.332 41.667 0.00 0.00 36.14 3.02
2703 3056 3.645268 ATCTTCGCAAGGGGGCCAC 62.645 63.158 4.39 0.00 38.47 5.01
2713 3066 2.359975 GGGGCCACGAAACAGGAG 60.360 66.667 4.39 0.00 0.00 3.69
2715 3068 1.376037 GGGCCACGAAACAGGAGAG 60.376 63.158 4.39 0.00 0.00 3.20
2721 3074 4.501071 GCCACGAAACAGGAGAGTATTAA 58.499 43.478 0.00 0.00 0.00 1.40
2731 3084 7.979786 ACAGGAGAGTATTAAATCAAGGAGA 57.020 36.000 0.00 0.00 0.00 3.71
2749 3102 3.130340 GGAGACAGAGAGAGTCAATGACC 59.870 52.174 10.12 1.81 38.46 4.02
2776 3129 7.878477 AAAATACAGAAGCAACACATCATTG 57.122 32.000 0.00 0.00 0.00 2.82
2864 3217 1.821216 TTCTGGAAATGCGGGACTTC 58.179 50.000 0.00 0.00 0.00 3.01
2896 3249 8.786826 TGTCTGGAAAGGTTACATTTATAGTG 57.213 34.615 0.00 0.00 0.00 2.74
2941 3294 3.928727 ATGTGCTCCTCATTTGTTGTG 57.071 42.857 0.00 0.00 0.00 3.33
2980 3333 3.459598 TGGGAAAGTGGGAGGATGATAAG 59.540 47.826 0.00 0.00 0.00 1.73
2994 3347 6.306987 AGGATGATAAGTTCACAACCTGTTT 58.693 36.000 9.19 0.00 37.11 2.83
3010 3363 8.962679 ACAACCTGTTTCATCTTTGTAACTAAA 58.037 29.630 0.00 0.00 35.03 1.85
3068 3421 4.556233 GGCTTTTTCAACTGGATTGTACC 58.444 43.478 0.00 0.00 39.54 3.34
3070 3423 4.038642 GCTTTTTCAACTGGATTGTACCCA 59.961 41.667 0.00 0.00 39.54 4.51
3091 3444 3.636231 CTGGCCCCACGTCTCCAA 61.636 66.667 0.00 0.00 0.00 3.53
3115 3468 1.382522 TGGCGATTCTGATTTGCTCC 58.617 50.000 10.62 0.00 0.00 4.70
3196 3549 2.164624 CAGTTTTCGGTTGGGTCAAACA 59.835 45.455 0.00 0.00 29.18 2.83
3198 3551 3.449377 AGTTTTCGGTTGGGTCAAACATT 59.551 39.130 0.00 0.00 29.18 2.71
3201 3554 0.319469 CGGTTGGGTCAAACATTGCC 60.319 55.000 0.00 0.00 29.18 4.52
3203 3556 1.416030 GGTTGGGTCAAACATTGCCTT 59.584 47.619 0.00 0.00 30.47 4.35
3204 3557 2.547855 GGTTGGGTCAAACATTGCCTTC 60.548 50.000 0.00 0.00 30.47 3.46
3206 3559 1.337118 GGGTCAAACATTGCCTTCCA 58.663 50.000 0.00 0.00 0.00 3.53
3209 3562 2.562298 GGTCAAACATTGCCTTCCATGA 59.438 45.455 0.00 0.00 0.00 3.07
3211 3564 4.240096 GTCAAACATTGCCTTCCATGAAG 58.760 43.478 0.00 0.00 39.17 3.02
3212 3565 2.997986 CAAACATTGCCTTCCATGAAGC 59.002 45.455 0.00 0.00 38.24 3.86
3213 3566 2.226962 ACATTGCCTTCCATGAAGCT 57.773 45.000 0.00 0.00 38.24 3.74
3214 3567 2.097825 ACATTGCCTTCCATGAAGCTC 58.902 47.619 0.00 0.00 38.24 4.09
3215 3568 2.097036 CATTGCCTTCCATGAAGCTCA 58.903 47.619 0.00 0.00 38.24 4.26
3216 3569 1.830279 TTGCCTTCCATGAAGCTCAG 58.170 50.000 0.00 0.00 38.24 3.35
3217 3570 0.694771 TGCCTTCCATGAAGCTCAGT 59.305 50.000 0.00 0.00 38.24 3.41
3218 3571 1.074405 TGCCTTCCATGAAGCTCAGTT 59.926 47.619 0.00 0.00 38.24 3.16
3219 3572 2.165998 GCCTTCCATGAAGCTCAGTTT 58.834 47.619 0.00 0.00 38.24 2.66
3220 3573 2.560105 GCCTTCCATGAAGCTCAGTTTT 59.440 45.455 0.00 0.00 38.24 2.43
3221 3574 3.366781 GCCTTCCATGAAGCTCAGTTTTC 60.367 47.826 0.00 0.00 38.24 2.29
3222 3575 3.120060 CCTTCCATGAAGCTCAGTTTTCG 60.120 47.826 0.00 0.00 38.24 3.46
3223 3576 2.426522 TCCATGAAGCTCAGTTTTCGG 58.573 47.619 0.00 0.00 0.00 4.30
3224 3577 2.154462 CCATGAAGCTCAGTTTTCGGT 58.846 47.619 0.00 0.00 0.00 4.69
3225 3578 2.554032 CCATGAAGCTCAGTTTTCGGTT 59.446 45.455 0.00 0.00 0.00 4.44
3226 3579 3.558505 CATGAAGCTCAGTTTTCGGTTG 58.441 45.455 0.00 0.00 0.00 3.77
3227 3580 1.946768 TGAAGCTCAGTTTTCGGTTGG 59.053 47.619 0.00 0.00 0.00 3.77
3228 3581 1.266989 GAAGCTCAGTTTTCGGTTGGG 59.733 52.381 0.00 0.00 0.00 4.12
3229 3582 0.182775 AGCTCAGTTTTCGGTTGGGT 59.817 50.000 0.00 0.00 0.00 4.51
3230 3583 0.591659 GCTCAGTTTTCGGTTGGGTC 59.408 55.000 0.00 0.00 0.00 4.46
3231 3584 1.961793 CTCAGTTTTCGGTTGGGTCA 58.038 50.000 0.00 0.00 0.00 4.02
3232 3585 2.294074 CTCAGTTTTCGGTTGGGTCAA 58.706 47.619 0.00 0.00 0.00 3.18
3233 3586 2.685897 CTCAGTTTTCGGTTGGGTCAAA 59.314 45.455 0.00 0.00 0.00 2.69
3234 3587 2.424246 TCAGTTTTCGGTTGGGTCAAAC 59.576 45.455 0.00 0.00 0.00 2.93
3235 3588 2.164624 CAGTTTTCGGTTGGGTCAAACA 59.835 45.455 0.00 0.00 29.18 2.83
3236 3589 3.028130 AGTTTTCGGTTGGGTCAAACAT 58.972 40.909 0.00 0.00 29.18 2.71
3237 3590 3.449377 AGTTTTCGGTTGGGTCAAACATT 59.551 39.130 0.00 0.00 29.18 2.71
3238 3591 3.444703 TTTCGGTTGGGTCAAACATTG 57.555 42.857 0.00 0.00 29.18 2.82
3239 3592 0.671251 TCGGTTGGGTCAAACATTGC 59.329 50.000 0.00 0.00 29.18 3.56
3240 3593 0.319469 CGGTTGGGTCAAACATTGCC 60.319 55.000 0.00 0.00 29.18 4.52
3241 3594 1.047801 GGTTGGGTCAAACATTGCCT 58.952 50.000 0.00 0.00 30.47 4.75
3242 3595 1.416030 GGTTGGGTCAAACATTGCCTT 59.584 47.619 0.00 0.00 30.47 4.35
3243 3596 2.547855 GGTTGGGTCAAACATTGCCTTC 60.548 50.000 0.00 0.00 30.47 3.46
3244 3597 1.337118 TGGGTCAAACATTGCCTTCC 58.663 50.000 0.00 0.00 0.00 3.46
3245 3598 1.337118 GGGTCAAACATTGCCTTCCA 58.663 50.000 0.00 0.00 0.00 3.53
3246 3599 1.901833 GGGTCAAACATTGCCTTCCAT 59.098 47.619 0.00 0.00 0.00 3.41
3247 3600 2.354003 GGGTCAAACATTGCCTTCCATG 60.354 50.000 0.00 0.00 0.00 3.66
3248 3601 2.562298 GGTCAAACATTGCCTTCCATGA 59.438 45.455 0.00 0.00 0.00 3.07
3249 3602 3.006752 GGTCAAACATTGCCTTCCATGAA 59.993 43.478 0.00 0.00 0.00 2.57
3250 3603 4.240096 GTCAAACATTGCCTTCCATGAAG 58.760 43.478 0.00 0.00 39.17 3.02
3251 3604 2.997986 CAAACATTGCCTTCCATGAAGC 59.002 45.455 0.00 0.00 38.24 3.86
3252 3605 2.226962 ACATTGCCTTCCATGAAGCT 57.773 45.000 0.00 0.00 38.24 3.74
3253 3606 2.097825 ACATTGCCTTCCATGAAGCTC 58.902 47.619 0.00 0.00 38.24 4.09
3254 3607 2.097036 CATTGCCTTCCATGAAGCTCA 58.903 47.619 0.00 0.00 38.24 4.26
3255 3608 1.830279 TTGCCTTCCATGAAGCTCAG 58.170 50.000 0.00 0.00 38.24 3.35
3256 3609 0.694771 TGCCTTCCATGAAGCTCAGT 59.305 50.000 0.00 0.00 38.24 3.41
3257 3610 1.074405 TGCCTTCCATGAAGCTCAGTT 59.926 47.619 0.00 0.00 38.24 3.16
3258 3611 2.165998 GCCTTCCATGAAGCTCAGTTT 58.834 47.619 0.00 0.00 38.24 2.66
3259 3612 2.560105 GCCTTCCATGAAGCTCAGTTTT 59.440 45.455 0.00 0.00 38.24 2.43
3260 3613 3.366781 GCCTTCCATGAAGCTCAGTTTTC 60.367 47.826 0.00 0.00 38.24 2.29
3261 3614 3.120060 CCTTCCATGAAGCTCAGTTTTCG 60.120 47.826 0.00 0.00 38.24 3.46
3262 3615 3.401033 TCCATGAAGCTCAGTTTTCGA 57.599 42.857 0.00 0.00 0.00 3.71
3263 3616 3.942829 TCCATGAAGCTCAGTTTTCGAT 58.057 40.909 0.00 0.00 0.00 3.59
3264 3617 5.084818 TCCATGAAGCTCAGTTTTCGATA 57.915 39.130 0.00 0.00 0.00 2.92
3265 3618 5.674525 TCCATGAAGCTCAGTTTTCGATAT 58.325 37.500 0.00 0.00 0.00 1.63
3266 3619 5.525012 TCCATGAAGCTCAGTTTTCGATATG 59.475 40.000 0.00 0.00 0.00 1.78
3267 3620 5.277683 CCATGAAGCTCAGTTTTCGATATGG 60.278 44.000 0.00 0.00 0.00 2.74
3268 3621 3.623060 TGAAGCTCAGTTTTCGATATGGC 59.377 43.478 0.00 0.00 0.00 4.40
3308 3661 4.283212 TGGTTTGACCTCCAATTCCAATTC 59.717 41.667 0.00 0.00 39.58 2.17
3310 3663 4.402616 TTGACCTCCAATTCCAATTCCT 57.597 40.909 0.00 0.00 0.00 3.36
3313 3666 3.434309 ACCTCCAATTCCAATTCCTGTG 58.566 45.455 0.00 0.00 0.00 3.66
3320 3673 3.524095 TTCCAATTCCTGTGACATGGT 57.476 42.857 0.00 0.00 31.40 3.55
3323 3676 3.843619 TCCAATTCCTGTGACATGGTCTA 59.156 43.478 0.00 0.00 33.15 2.59
3344 3697 8.190784 GGTCTAACCTCCACAATTCATTTTATG 58.809 37.037 0.00 0.00 34.73 1.90
3349 3702 8.608185 ACCTCCACAATTCATTTTATGGTTAT 57.392 30.769 0.00 0.00 0.00 1.89
3351 3704 8.694540 CCTCCACAATTCATTTTATGGTTATGA 58.305 33.333 0.00 0.00 0.00 2.15
3465 3818 8.559536 TGTTCACTCTTGTATTCTGTTCAAATC 58.440 33.333 0.00 0.00 0.00 2.17
3506 3859 2.096496 CCGCAGAGATGGTTCATTGTTC 59.904 50.000 0.00 0.00 0.00 3.18
3507 3860 2.743664 CGCAGAGATGGTTCATTGTTCA 59.256 45.455 0.00 0.00 0.00 3.18
3553 3906 7.222417 TGGCATGTATTTATTCGCATTTGAAAG 59.778 33.333 0.00 0.00 0.00 2.62
3555 3908 8.261908 GCATGTATTTATTCGCATTTGAAAGAC 58.738 33.333 0.00 0.00 0.00 3.01
3556 3909 7.946918 TGTATTTATTCGCATTTGAAAGACG 57.053 32.000 0.00 0.00 0.00 4.18
3569 3922 3.609853 TGAAAGACGAGATTTCCCATGG 58.390 45.455 4.14 4.14 36.11 3.66
3655 4011 7.790861 AACTAACATAACTAAAACAATGCGC 57.209 32.000 0.00 0.00 0.00 6.09
3660 4016 6.086222 ACATAACTAAAACAATGCGCTTGAG 58.914 36.000 21.19 12.71 38.29 3.02
3674 4030 1.467374 GCTTGAGTGTCTCTCTCGCTC 60.467 57.143 3.71 0.00 43.13 5.03
3680 4036 0.675208 TGTCTCTCTCGCTCTCGCTT 60.675 55.000 0.00 0.00 35.26 4.68
3686 4042 4.742201 TCGCTCTCGCTTGTGGGC 62.742 66.667 0.00 0.00 35.26 5.36
3699 4055 3.700970 TGGGCGATTCGTGAGGCA 61.701 61.111 8.03 0.00 0.00 4.75
3715 4071 4.717629 CAACTCCCGCTCGTCGCA 62.718 66.667 0.00 0.00 39.08 5.10
3721 4077 3.900892 CCGCTCGTCGCATACCCT 61.901 66.667 0.00 0.00 39.08 4.34
3731 4087 0.597637 CGCATACCCTAGCAAGTCCG 60.598 60.000 0.00 0.00 0.00 4.79
3737 4093 1.338136 CCCTAGCAAGTCCGTCCCAT 61.338 60.000 0.00 0.00 0.00 4.00
3742 4098 2.691252 AAGTCCGTCCCATCCCCC 60.691 66.667 0.00 0.00 0.00 5.40
3744 4100 2.691252 GTCCGTCCCATCCCCCTT 60.691 66.667 0.00 0.00 0.00 3.95
3746 4102 3.489513 CCGTCCCATCCCCCTTCC 61.490 72.222 0.00 0.00 0.00 3.46
3747 4103 2.690881 CGTCCCATCCCCCTTCCA 60.691 66.667 0.00 0.00 0.00 3.53
3748 4104 3.007542 GTCCCATCCCCCTTCCAC 58.992 66.667 0.00 0.00 0.00 4.02
3749 4105 1.928567 GTCCCATCCCCCTTCCACA 60.929 63.158 0.00 0.00 0.00 4.17
3750 4106 1.086565 TCCCATCCCCCTTCCACAT 59.913 57.895 0.00 0.00 0.00 3.21
3751 4107 0.993509 TCCCATCCCCCTTCCACATC 60.994 60.000 0.00 0.00 0.00 3.06
3752 4108 1.288508 CCCATCCCCCTTCCACATCA 61.289 60.000 0.00 0.00 0.00 3.07
3764 4120 0.460987 CCACATCAGCCTCTTCCGTC 60.461 60.000 0.00 0.00 0.00 4.79
3791 4147 6.703319 TCCGAGGTGTAGAATCAAACATTTA 58.297 36.000 0.00 0.00 0.00 1.40
3793 4149 7.279981 TCCGAGGTGTAGAATCAAACATTTATG 59.720 37.037 0.00 0.00 0.00 1.90
3801 4157 6.493166 AGAATCAAACATTTATGGTCCCTGA 58.507 36.000 0.00 0.00 0.00 3.86
3823 4179 3.761218 ACTGATGACAACGACTCTGAGAT 59.239 43.478 12.44 0.00 0.00 2.75
3833 4189 1.040339 ACTCTGAGATGGAGGCCGAC 61.040 60.000 12.44 0.00 35.34 4.79
3837 4193 3.492311 GAGATGGAGGCCGACGAGC 62.492 68.421 0.00 0.00 0.00 5.03
3843 4199 2.676822 AGGCCGACGAGCTCTCAA 60.677 61.111 12.85 0.00 0.00 3.02
3869 4225 2.594962 CGCGGTCTGTGTTGTGGAC 61.595 63.158 0.00 0.00 0.00 4.02
3875 4231 1.149174 CTGTGTTGTGGACCTGGCT 59.851 57.895 0.00 0.00 0.00 4.75
3876 4232 0.886490 CTGTGTTGTGGACCTGGCTC 60.886 60.000 0.00 0.00 0.00 4.70
3878 4234 0.685097 GTGTTGTGGACCTGGCTCTA 59.315 55.000 0.00 0.00 0.00 2.43
3883 4239 1.379977 TGGACCTGGCTCTACTCCG 60.380 63.158 0.00 0.00 0.00 4.63
3886 4242 2.286127 GACCTGGCTCTACTCCGTGC 62.286 65.000 0.00 0.00 0.00 5.34
3894 4250 2.047274 TACTCCGTGCTGGCTTGC 60.047 61.111 0.00 0.00 37.80 4.01
3898 4254 2.126228 CCGTGCTGGCTTGCATTG 60.126 61.111 8.74 5.49 45.23 2.82
3908 4264 1.187567 GCTTGCATTGGGGTTCCAGT 61.188 55.000 0.00 0.00 45.04 4.00
3913 4269 0.036164 CATTGGGGTTCCAGTCGACA 59.964 55.000 19.50 0.00 45.04 4.35
3914 4270 0.324943 ATTGGGGTTCCAGTCGACAG 59.675 55.000 19.50 10.04 45.04 3.51
3941 4297 4.382754 GCCGCTCTATGTTCAAAACAAAAG 59.617 41.667 0.00 0.00 45.86 2.27
3946 4302 6.978080 GCTCTATGTTCAAAACAAAAGGTCAA 59.022 34.615 0.00 0.00 45.86 3.18
3961 4317 2.814336 AGGTCAAGGTCGAAAAATGAGC 59.186 45.455 10.97 10.97 38.45 4.26
3965 4321 3.748048 TCAAGGTCGAAAAATGAGCTCAG 59.252 43.478 22.96 7.32 42.94 3.35
3972 4328 4.449068 TCGAAAAATGAGCTCAGTGTCTTC 59.551 41.667 22.96 19.51 0.00 2.87
3973 4329 4.377841 CGAAAAATGAGCTCAGTGTCTTCC 60.378 45.833 22.96 0.00 0.00 3.46
3976 4332 1.423584 TGAGCTCAGTGTCTTCCCAA 58.576 50.000 13.74 0.00 0.00 4.12
3984 4340 3.023832 CAGTGTCTTCCCAAGGTGTTTT 58.976 45.455 0.00 0.00 0.00 2.43
4000 4356 7.341445 AGGTGTTTTCTGCAAATTAACACTA 57.659 32.000 22.27 0.00 44.77 2.74
4001 4357 7.777095 AGGTGTTTTCTGCAAATTAACACTAA 58.223 30.769 22.27 0.00 44.77 2.24
4002 4358 8.421002 AGGTGTTTTCTGCAAATTAACACTAAT 58.579 29.630 22.27 12.69 44.77 1.73
4004 4360 9.243637 GTGTTTTCTGCAAATTAACACTAATGA 57.756 29.630 18.76 0.00 43.07 2.57
4005 4361 9.979578 TGTTTTCTGCAAATTAACACTAATGAT 57.020 25.926 0.00 0.00 0.00 2.45
4009 4367 5.659463 TGCAAATTAACACTAATGATGGGC 58.341 37.500 0.00 0.00 0.00 5.36
4014 4372 0.810031 ACACTAATGATGGGCGTCGC 60.810 55.000 9.22 9.22 0.00 5.19
4015 4373 0.809636 CACTAATGATGGGCGTCGCA 60.810 55.000 20.50 0.00 0.00 5.10
4017 4375 0.514255 CTAATGATGGGCGTCGCATG 59.486 55.000 20.50 0.00 37.16 4.06
4033 4391 2.735772 ATGGGCCCTACGCTGACTG 61.736 63.158 25.70 0.00 37.74 3.51
4047 4405 1.812922 GACTGAGCAGGCCATGTCG 60.813 63.158 5.01 0.00 0.00 4.35
4079 4437 1.753073 GGCCAGAAATGGTGGATTGAG 59.247 52.381 0.00 0.00 37.23 3.02
4082 4440 2.679837 CCAGAAATGGTGGATTGAGTCG 59.320 50.000 0.00 0.00 37.23 4.18
4094 4452 3.487574 GGATTGAGTCGTTCGCTCATAAG 59.512 47.826 15.42 0.00 41.87 1.73
4106 4464 3.450817 TCGCTCATAAGATGGACCAAAGA 59.549 43.478 0.00 0.00 0.00 2.52
4111 4469 4.782691 TCATAAGATGGACCAAAGAGACCA 59.217 41.667 0.00 0.00 36.83 4.02
4124 4496 4.762289 AAGAGACCAAAGAGAAGTGTGT 57.238 40.909 0.00 0.00 0.00 3.72
4125 4497 5.871396 AAGAGACCAAAGAGAAGTGTGTA 57.129 39.130 0.00 0.00 0.00 2.90
4141 4513 3.061295 GTGTGTACAATGTGCTCATCTCG 59.939 47.826 9.21 0.00 32.56 4.04
4143 4515 2.270923 GTACAATGTGCTCATCTCGCA 58.729 47.619 1.01 0.00 32.56 5.10
4160 4532 3.799366 TCGCAAGAGTTAACTGACCAAA 58.201 40.909 14.14 0.00 45.01 3.28
4162 4534 3.607078 CGCAAGAGTTAACTGACCAAAGC 60.607 47.826 14.14 6.31 43.02 3.51
4165 4537 3.142174 AGAGTTAACTGACCAAAGCTGC 58.858 45.455 14.14 0.00 0.00 5.25
4174 4546 3.932710 CTGACCAAAGCTGCGTTTATCTA 59.067 43.478 0.00 0.00 0.00 1.98
4244 4616 2.510768 ATGCCTTAATCTCGACCGAC 57.489 50.000 0.00 0.00 0.00 4.79
4278 4650 1.900498 GGCCACTTGCAGCAAGAGT 60.900 57.895 36.69 17.51 43.42 3.24
4294 4666 8.133627 GCAGCAAGAGTGATTACATATCAAAAT 58.866 33.333 0.00 0.00 0.00 1.82
4315 4688 9.428097 CAAAATATATCTTGACCATCGATCTCA 57.572 33.333 0.00 0.00 0.00 3.27
4321 4694 2.456577 TGACCATCGATCTCAGAACCA 58.543 47.619 0.00 0.00 0.00 3.67
4333 4706 4.601084 TCTCAGAACCACTCCCTAACTAG 58.399 47.826 0.00 0.00 0.00 2.57
4340 4713 4.716794 ACCACTCCCTAACTAGACGATAG 58.283 47.826 0.00 0.00 46.19 2.08
4371 4744 8.920509 AACAAATATTAAATACCAAAGCGTCC 57.079 30.769 0.00 0.00 0.00 4.79
4373 4746 7.971722 ACAAATATTAAATACCAAAGCGTCCAC 59.028 33.333 0.00 0.00 0.00 4.02
4391 4764 0.949105 ACGTGGTTGAACCGATCAGC 60.949 55.000 10.16 0.00 42.58 4.26
4392 4765 0.948623 CGTGGTTGAACCGATCAGCA 60.949 55.000 10.16 0.00 42.58 4.41
4393 4766 1.234821 GTGGTTGAACCGATCAGCAA 58.765 50.000 10.16 0.00 42.58 3.91
4394 4767 1.069227 GTGGTTGAACCGATCAGCAAC 60.069 52.381 10.16 0.00 42.58 4.17
4395 4768 1.202758 TGGTTGAACCGATCAGCAACT 60.203 47.619 10.16 0.00 42.58 3.16
4396 4769 1.880027 GGTTGAACCGATCAGCAACTT 59.120 47.619 0.00 0.00 40.74 2.66
4397 4770 2.293399 GGTTGAACCGATCAGCAACTTT 59.707 45.455 0.00 0.00 40.74 2.66
4398 4771 3.500680 GGTTGAACCGATCAGCAACTTTA 59.499 43.478 0.00 0.00 40.74 1.85
4399 4772 4.378459 GGTTGAACCGATCAGCAACTTTAG 60.378 45.833 0.00 0.00 40.74 1.85
4400 4773 4.265904 TGAACCGATCAGCAACTTTAGA 57.734 40.909 0.00 0.00 33.04 2.10
4401 4774 4.245660 TGAACCGATCAGCAACTTTAGAG 58.754 43.478 0.00 0.00 33.04 2.43
4402 4775 4.021456 TGAACCGATCAGCAACTTTAGAGA 60.021 41.667 0.00 0.00 33.04 3.10
4403 4776 4.744795 ACCGATCAGCAACTTTAGAGAT 57.255 40.909 0.00 0.00 0.00 2.75
4404 4777 4.688021 ACCGATCAGCAACTTTAGAGATC 58.312 43.478 0.00 0.00 0.00 2.75
4405 4778 4.160439 ACCGATCAGCAACTTTAGAGATCA 59.840 41.667 0.00 0.00 33.33 2.92
4406 4779 5.163364 ACCGATCAGCAACTTTAGAGATCAT 60.163 40.000 0.00 0.00 33.33 2.45
4407 4780 5.404968 CCGATCAGCAACTTTAGAGATCATC 59.595 44.000 0.00 0.00 33.33 2.92
4408 4781 5.404968 CGATCAGCAACTTTAGAGATCATCC 59.595 44.000 0.00 0.00 33.33 3.51
4409 4782 5.946942 TCAGCAACTTTAGAGATCATCCT 57.053 39.130 0.00 0.00 0.00 3.24
4410 4783 7.522889 CGATCAGCAACTTTAGAGATCATCCTA 60.523 40.741 0.00 0.00 33.33 2.94
4411 4784 7.423844 TCAGCAACTTTAGAGATCATCCTAA 57.576 36.000 0.00 0.00 0.00 2.69
4412 4785 7.851228 TCAGCAACTTTAGAGATCATCCTAAA 58.149 34.615 11.74 11.74 34.71 1.85
4413 4786 8.321353 TCAGCAACTTTAGAGATCATCCTAAAA 58.679 33.333 12.73 0.00 35.29 1.52
4414 4787 8.950210 CAGCAACTTTAGAGATCATCCTAAAAA 58.050 33.333 12.73 0.17 35.29 1.94
4458 4831 7.694784 GCATCAAAATAAATGGCTGAACAAATG 59.305 33.333 0.00 0.00 0.00 2.32
4488 4861 2.540101 GTGCCTTAAATCTCGATCGGTG 59.460 50.000 16.41 8.93 0.00 4.94
4499 4872 4.201657 TCTCGATCGGTGTACTTAATGGA 58.798 43.478 16.41 0.00 0.00 3.41
4503 4876 4.439700 CGATCGGTGTACTTAATGGACACT 60.440 45.833 7.38 2.22 42.50 3.55
4508 4881 4.083484 GGTGTACTTAATGGACACTTGCAC 60.083 45.833 15.56 0.00 42.50 4.57
4509 4882 4.755123 GTGTACTTAATGGACACTTGCACT 59.245 41.667 11.14 0.00 40.26 4.40
4530 4903 6.859112 ACTAACAGTGATATCTGAACTGGT 57.141 37.500 20.04 17.44 44.49 4.00
4531 4904 7.956328 ACTAACAGTGATATCTGAACTGGTA 57.044 36.000 20.04 17.58 44.49 3.25
4532 4905 8.540507 ACTAACAGTGATATCTGAACTGGTAT 57.459 34.615 20.04 11.56 41.84 2.73
4533 4906 8.417106 ACTAACAGTGATATCTGAACTGGTATG 58.583 37.037 20.04 14.95 41.84 2.39
4534 4907 7.423844 AACAGTGATATCTGAACTGGTATGA 57.576 36.000 20.04 0.00 44.49 2.15
4535 4908 7.609097 ACAGTGATATCTGAACTGGTATGAT 57.391 36.000 20.04 2.14 44.49 2.45
4536 4909 8.712228 ACAGTGATATCTGAACTGGTATGATA 57.288 34.615 20.04 0.00 44.49 2.15
4537 4910 9.319060 ACAGTGATATCTGAACTGGTATGATAT 57.681 33.333 20.04 0.00 44.49 1.63
4544 4917 7.669089 TCTGAACTGGTATGATATAACACCA 57.331 36.000 0.00 0.00 38.72 4.17
4551 4924 7.373617 TGGTATGATATAACACCAGTGATGT 57.626 36.000 4.48 0.00 36.15 3.06
4552 4925 8.485578 TGGTATGATATAACACCAGTGATGTA 57.514 34.615 4.48 0.00 36.15 2.29
4553 4926 9.100197 TGGTATGATATAACACCAGTGATGTAT 57.900 33.333 4.48 0.93 36.15 2.29
4554 4927 9.944376 GGTATGATATAACACCAGTGATGTATT 57.056 33.333 4.48 0.00 0.00 1.89
4556 4929 8.853077 ATGATATAACACCAGTGATGTATTGG 57.147 34.615 4.48 0.00 41.68 3.16
4558 4931 8.271458 TGATATAACACCAGTGATGTATTGGTT 58.729 33.333 4.48 0.00 46.23 3.67
4559 4932 9.120538 GATATAACACCAGTGATGTATTGGTTT 57.879 33.333 4.48 0.00 46.23 3.27
4560 4933 5.705609 AACACCAGTGATGTATTGGTTTC 57.294 39.130 4.48 0.00 46.23 2.78
4561 4934 4.985538 ACACCAGTGATGTATTGGTTTCT 58.014 39.130 4.48 0.00 46.23 2.52
4562 4935 6.121776 ACACCAGTGATGTATTGGTTTCTA 57.878 37.500 4.48 0.00 46.23 2.10
4563 4936 5.938125 ACACCAGTGATGTATTGGTTTCTAC 59.062 40.000 4.48 0.00 46.23 2.59
4564 4937 6.173339 CACCAGTGATGTATTGGTTTCTACT 58.827 40.000 0.00 0.00 46.23 2.57
4565 4938 7.038587 ACACCAGTGATGTATTGGTTTCTACTA 60.039 37.037 4.48 0.00 46.23 1.82
4566 4939 7.822334 CACCAGTGATGTATTGGTTTCTACTAA 59.178 37.037 0.00 0.00 46.23 2.24
4567 4940 8.548877 ACCAGTGATGTATTGGTTTCTACTAAT 58.451 33.333 0.00 0.00 46.23 1.73
4568 4941 8.830580 CCAGTGATGTATTGGTTTCTACTAATG 58.169 37.037 0.00 0.00 36.31 1.90
4569 4942 8.830580 CAGTGATGTATTGGTTTCTACTAATGG 58.169 37.037 0.00 0.00 36.31 3.16
4570 4943 8.768397 AGTGATGTATTGGTTTCTACTAATGGA 58.232 33.333 0.00 0.00 36.31 3.41
4571 4944 9.391006 GTGATGTATTGGTTTCTACTAATGGAA 57.609 33.333 0.00 0.00 36.31 3.53
4572 4945 9.967451 TGATGTATTGGTTTCTACTAATGGAAA 57.033 29.630 0.00 0.00 36.31 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.814899 CAAAACCATAATTATGTTAATGGAGCA 57.185 29.630 21.20 0.00 33.66 4.26
3 4 9.816354 ACAAAACCATAATTATGTTAATGGAGC 57.184 29.630 21.20 0.00 33.66 4.70
5 6 9.593134 GCACAAAACCATAATTATGTTAATGGA 57.407 29.630 21.20 0.00 33.66 3.41
6 7 9.376075 TGCACAAAACCATAATTATGTTAATGG 57.624 29.630 21.20 11.90 35.45 3.16
11 12 9.669887 AATGATGCACAAAACCATAATTATGTT 57.330 25.926 21.20 13.62 31.82 2.71
14 15 9.985730 CCTAATGATGCACAAAACCATAATTAT 57.014 29.630 0.00 0.00 29.01 1.28
15 16 9.194972 TCCTAATGATGCACAAAACCATAATTA 57.805 29.630 0.00 0.00 0.00 1.40
16 17 8.076910 TCCTAATGATGCACAAAACCATAATT 57.923 30.769 0.00 0.00 0.00 1.40
17 18 7.658525 TCCTAATGATGCACAAAACCATAAT 57.341 32.000 0.00 0.00 0.00 1.28
18 19 7.490840 CATCCTAATGATGCACAAAACCATAA 58.509 34.615 0.00 0.00 44.16 1.90
19 20 7.041635 CATCCTAATGATGCACAAAACCATA 57.958 36.000 0.00 0.00 44.16 2.74
20 21 5.909477 CATCCTAATGATGCACAAAACCAT 58.091 37.500 0.00 0.00 44.16 3.55
21 22 5.327616 CATCCTAATGATGCACAAAACCA 57.672 39.130 0.00 0.00 44.16 3.67
44 45 2.110967 CCTGGCGTCTGCATCCTTG 61.111 63.158 0.00 0.00 45.35 3.61
45 46 2.270205 CCTGGCGTCTGCATCCTT 59.730 61.111 0.00 0.00 45.35 3.36
46 47 3.790437 CCCTGGCGTCTGCATCCT 61.790 66.667 0.00 0.00 45.35 3.24
47 48 4.864334 CCCCTGGCGTCTGCATCC 62.864 72.222 0.00 0.00 45.35 3.51
60 61 2.381941 GGAAGCAGGATCAGCCCCT 61.382 63.158 5.84 0.00 37.37 4.79
61 62 2.194326 GGAAGCAGGATCAGCCCC 59.806 66.667 5.84 4.68 37.37 5.80
62 63 0.323725 TTTGGAAGCAGGATCAGCCC 60.324 55.000 5.84 2.58 37.37 5.19
63 64 1.549203 TTTTGGAAGCAGGATCAGCC 58.451 50.000 5.84 0.00 0.00 4.85
101 102 9.232473 GGACTCATTCCAACTAATTTTCTAGTT 57.768 33.333 0.00 0.00 45.10 2.24
102 103 8.794335 GGACTCATTCCAACTAATTTTCTAGT 57.206 34.615 0.00 0.00 45.10 2.57
117 118 1.086634 GCGTCTGCAGGACTCATTCC 61.087 60.000 15.13 0.00 46.33 3.01
118 119 1.416813 CGCGTCTGCAGGACTCATTC 61.417 60.000 15.13 0.00 42.44 2.67
119 120 1.446792 CGCGTCTGCAGGACTCATT 60.447 57.895 15.13 0.00 42.44 2.57
120 121 2.182791 CGCGTCTGCAGGACTCAT 59.817 61.111 15.13 0.00 42.44 2.90
121 122 4.056125 CCGCGTCTGCAGGACTCA 62.056 66.667 15.13 0.00 42.44 3.41
122 123 2.564553 ATTCCGCGTCTGCAGGACTC 62.565 60.000 15.13 5.14 41.33 3.36
123 124 1.320344 TATTCCGCGTCTGCAGGACT 61.320 55.000 15.13 0.15 41.33 3.85
124 125 0.872021 CTATTCCGCGTCTGCAGGAC 60.872 60.000 15.13 9.86 41.33 3.85
125 126 1.035385 TCTATTCCGCGTCTGCAGGA 61.035 55.000 15.13 0.00 42.97 3.86
126 127 0.596083 CTCTATTCCGCGTCTGCAGG 60.596 60.000 15.13 0.00 42.97 4.85
127 128 0.382158 TCTCTATTCCGCGTCTGCAG 59.618 55.000 7.63 7.63 42.97 4.41
128 129 1.032794 ATCTCTATTCCGCGTCTGCA 58.967 50.000 4.92 0.00 42.97 4.41
129 130 1.269309 ACATCTCTATTCCGCGTCTGC 60.269 52.381 4.92 0.00 37.91 4.26
130 131 2.783828 ACATCTCTATTCCGCGTCTG 57.216 50.000 4.92 0.00 0.00 3.51
131 132 3.802948 AAACATCTCTATTCCGCGTCT 57.197 42.857 4.92 0.00 0.00 4.18
132 133 4.092968 ACAAAAACATCTCTATTCCGCGTC 59.907 41.667 4.92 0.00 0.00 5.19
133 134 4.000988 ACAAAAACATCTCTATTCCGCGT 58.999 39.130 4.92 0.00 0.00 6.01
134 135 4.092821 TGACAAAAACATCTCTATTCCGCG 59.907 41.667 0.00 0.00 0.00 6.46
135 136 5.351465 TCTGACAAAAACATCTCTATTCCGC 59.649 40.000 0.00 0.00 0.00 5.54
136 137 6.968131 TCTGACAAAAACATCTCTATTCCG 57.032 37.500 0.00 0.00 0.00 4.30
137 138 8.950210 TGATTCTGACAAAAACATCTCTATTCC 58.050 33.333 0.00 0.00 0.00 3.01
142 143 9.288576 TGTATTGATTCTGACAAAAACATCTCT 57.711 29.630 0.00 0.00 0.00 3.10
143 144 9.552114 CTGTATTGATTCTGACAAAAACATCTC 57.448 33.333 0.00 0.00 31.76 2.75
144 145 8.517878 CCTGTATTGATTCTGACAAAAACATCT 58.482 33.333 0.00 0.00 31.76 2.90
145 146 8.299570 ACCTGTATTGATTCTGACAAAAACATC 58.700 33.333 0.00 0.00 31.76 3.06
146 147 8.181904 ACCTGTATTGATTCTGACAAAAACAT 57.818 30.769 0.00 0.00 31.76 2.71
147 148 7.581213 ACCTGTATTGATTCTGACAAAAACA 57.419 32.000 0.00 0.00 0.00 2.83
148 149 8.784043 ACTACCTGTATTGATTCTGACAAAAAC 58.216 33.333 0.00 0.00 0.00 2.43
149 150 8.918202 ACTACCTGTATTGATTCTGACAAAAA 57.082 30.769 0.00 0.00 0.00 1.94
150 151 9.653287 CTACTACCTGTATTGATTCTGACAAAA 57.347 33.333 0.00 0.00 0.00 2.44
151 152 9.031537 TCTACTACCTGTATTGATTCTGACAAA 57.968 33.333 0.00 0.00 0.00 2.83
152 153 8.589701 TCTACTACCTGTATTGATTCTGACAA 57.410 34.615 0.00 0.00 0.00 3.18
153 154 8.589701 TTCTACTACCTGTATTGATTCTGACA 57.410 34.615 0.00 0.00 0.00 3.58
154 155 9.303537 GTTTCTACTACCTGTATTGATTCTGAC 57.696 37.037 0.00 0.00 0.00 3.51
155 156 8.188799 CGTTTCTACTACCTGTATTGATTCTGA 58.811 37.037 0.00 0.00 0.00 3.27
156 157 8.188799 TCGTTTCTACTACCTGTATTGATTCTG 58.811 37.037 0.00 0.00 0.00 3.02
157 158 8.289939 TCGTTTCTACTACCTGTATTGATTCT 57.710 34.615 0.00 0.00 0.00 2.40
158 159 8.969267 CATCGTTTCTACTACCTGTATTGATTC 58.031 37.037 0.00 0.00 0.00 2.52
159 160 8.475639 ACATCGTTTCTACTACCTGTATTGATT 58.524 33.333 0.00 0.00 0.00 2.57
160 161 7.921214 CACATCGTTTCTACTACCTGTATTGAT 59.079 37.037 0.00 0.00 0.00 2.57
161 162 7.121611 TCACATCGTTTCTACTACCTGTATTGA 59.878 37.037 0.00 0.00 0.00 2.57
162 163 7.220300 GTCACATCGTTTCTACTACCTGTATTG 59.780 40.741 0.00 0.00 0.00 1.90
180 181 1.864565 TGTTCACACTGGTCACATCG 58.135 50.000 0.00 0.00 0.00 3.84
199 200 2.148916 TTGACTCGTTTCGCACAGAT 57.851 45.000 0.00 0.00 0.00 2.90
207 208 2.096218 GCTCCACACATTGACTCGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
220 221 3.510360 TCCTACTAGTCTTTGCTCCACAC 59.490 47.826 0.00 0.00 0.00 3.82
231 232 4.810345 CCCAGATTTCCTCCTACTAGTCT 58.190 47.826 0.00 0.00 0.00 3.24
266 267 5.238214 GGATTATCATCTTGTTGTGAGGCTC 59.762 44.000 7.79 7.79 0.00 4.70
299 300 8.129496 AGAGGGTTTCTTTGTTGTTTTAAAGA 57.871 30.769 0.00 0.00 40.17 2.52
300 301 8.032451 TGAGAGGGTTTCTTTGTTGTTTTAAAG 58.968 33.333 0.00 0.00 35.87 1.85
304 305 5.714806 TCTGAGAGGGTTTCTTTGTTGTTTT 59.285 36.000 0.00 0.00 35.87 2.43
305 306 5.261216 TCTGAGAGGGTTTCTTTGTTGTTT 58.739 37.500 0.00 0.00 35.87 2.83
306 307 4.855340 TCTGAGAGGGTTTCTTTGTTGTT 58.145 39.130 0.00 0.00 35.87 2.83
308 309 4.708177 TCTCTGAGAGGGTTTCTTTGTTG 58.292 43.478 9.97 0.00 35.87 3.33
311 312 5.220710 TCTTCTCTGAGAGGGTTTCTTTG 57.779 43.478 15.70 0.00 35.87 2.77
314 315 5.090139 TCATTCTTCTCTGAGAGGGTTTCT 58.910 41.667 15.70 0.00 39.43 2.52
315 316 5.413309 TCATTCTTCTCTGAGAGGGTTTC 57.587 43.478 15.70 0.00 0.00 2.78
316 317 5.832539 TTCATTCTTCTCTGAGAGGGTTT 57.167 39.130 15.70 0.19 0.00 3.27
318 319 5.028802 TGATTCATTCTTCTCTGAGAGGGT 58.971 41.667 15.70 3.85 0.00 4.34
319 320 5.611128 TGATTCATTCTTCTCTGAGAGGG 57.389 43.478 15.70 9.52 0.00 4.30
321 322 7.321908 TGTCTTGATTCATTCTTCTCTGAGAG 58.678 38.462 7.52 2.28 0.00 3.20
326 327 7.631933 AGGATTGTCTTGATTCATTCTTCTCT 58.368 34.615 0.00 0.00 0.00 3.10
327 328 7.862512 AGGATTGTCTTGATTCATTCTTCTC 57.137 36.000 0.00 0.00 0.00 2.87
419 420 2.743938 AGTCTACTGTCAACGCACAAG 58.256 47.619 0.00 0.00 0.00 3.16
433 434 8.968242 CAACTTTAAAAGGAATTGCAAGTCTAC 58.032 33.333 24.47 10.52 0.00 2.59
487 488 4.489771 GGTATGTGGCAGCCCGCT 62.490 66.667 9.64 0.00 42.28 5.52
589 590 9.018582 GCAAAGAAAAGATAGGAGGCATAATAT 57.981 33.333 0.00 0.00 0.00 1.28
590 591 7.448469 GGCAAAGAAAAGATAGGAGGCATAATA 59.552 37.037 0.00 0.00 0.00 0.98
591 592 6.266330 GGCAAAGAAAAGATAGGAGGCATAAT 59.734 38.462 0.00 0.00 0.00 1.28
592 593 5.594317 GGCAAAGAAAAGATAGGAGGCATAA 59.406 40.000 0.00 0.00 0.00 1.90
593 594 5.133221 GGCAAAGAAAAGATAGGAGGCATA 58.867 41.667 0.00 0.00 0.00 3.14
594 595 3.956848 GGCAAAGAAAAGATAGGAGGCAT 59.043 43.478 0.00 0.00 0.00 4.40
595 596 3.245229 TGGCAAAGAAAAGATAGGAGGCA 60.245 43.478 0.00 0.00 0.00 4.75
596 597 3.129462 GTGGCAAAGAAAAGATAGGAGGC 59.871 47.826 0.00 0.00 0.00 4.70
597 598 4.335416 TGTGGCAAAGAAAAGATAGGAGG 58.665 43.478 0.00 0.00 0.00 4.30
598 599 5.335976 GGTTGTGGCAAAGAAAAGATAGGAG 60.336 44.000 0.00 0.00 0.00 3.69
599 600 4.522789 GGTTGTGGCAAAGAAAAGATAGGA 59.477 41.667 0.00 0.00 0.00 2.94
600 601 4.615912 CGGTTGTGGCAAAGAAAAGATAGG 60.616 45.833 0.00 0.00 0.00 2.57
601 602 4.023193 ACGGTTGTGGCAAAGAAAAGATAG 60.023 41.667 0.00 0.00 0.00 2.08
602 603 3.886505 ACGGTTGTGGCAAAGAAAAGATA 59.113 39.130 0.00 0.00 0.00 1.98
603 604 2.693074 ACGGTTGTGGCAAAGAAAAGAT 59.307 40.909 0.00 0.00 0.00 2.40
604 605 2.096248 ACGGTTGTGGCAAAGAAAAGA 58.904 42.857 0.00 0.00 0.00 2.52
622 623 1.536149 GAAACGATGGAGAGACGACG 58.464 55.000 0.00 0.00 0.00 5.12
678 680 1.074566 TGTGTGTGGCCCAATATGTGA 59.925 47.619 0.00 0.00 0.00 3.58
694 696 4.368808 GATGTTGCGCGCGTGTGT 62.369 61.111 32.35 13.98 0.00 3.72
695 697 2.221704 TTAGATGTTGCGCGCGTGTG 62.222 55.000 32.35 4.87 0.00 3.82
696 698 1.561717 TTTAGATGTTGCGCGCGTGT 61.562 50.000 32.35 12.17 0.00 4.49
697 699 0.247655 ATTTAGATGTTGCGCGCGTG 60.248 50.000 32.35 16.86 0.00 5.34
698 700 1.257936 CTATTTAGATGTTGCGCGCGT 59.742 47.619 32.35 11.30 0.00 6.01
699 701 1.257936 ACTATTTAGATGTTGCGCGCG 59.742 47.619 28.44 28.44 0.00 6.86
700 702 4.647291 ATACTATTTAGATGTTGCGCGC 57.353 40.909 27.26 27.26 0.00 6.86
701 703 7.345192 AGAAAATACTATTTAGATGTTGCGCG 58.655 34.615 0.00 0.00 0.00 6.86
702 704 9.503427 AAAGAAAATACTATTTAGATGTTGCGC 57.497 29.630 0.00 0.00 0.00 6.09
916 918 8.621286 GGGTAGATGTGTAATAAGTTTGATTGG 58.379 37.037 0.00 0.00 0.00 3.16
935 937 7.949006 AGGAACTAATCTATTGTACGGGTAGAT 59.051 37.037 8.05 8.05 36.02 1.98
1024 1026 7.386848 TCCAATTACACACTACTTCAACTTAGC 59.613 37.037 0.00 0.00 0.00 3.09
1369 1377 2.416893 GCTTGAGCTAGGTTTACTGCAC 59.583 50.000 0.00 0.00 38.21 4.57
1427 1435 3.251479 TCGATGATTGTCCTCCAGTTG 57.749 47.619 0.00 0.00 0.00 3.16
1478 1486 3.636300 CTCAATGTCCCAGAAAACACCAA 59.364 43.478 0.00 0.00 0.00 3.67
1638 1646 0.039437 TCTCGTTCTCGCAGTTGACC 60.039 55.000 0.00 0.00 36.96 4.02
1803 1811 2.056815 TGCAAGTTGCTTGTGGCCA 61.057 52.632 27.17 0.00 45.31 5.36
1821 1829 5.424895 AGACTCTTCTGCTATCAAATCCAGT 59.575 40.000 0.00 0.00 0.00 4.00
1854 1862 2.297597 AGTGTACTTGGTCACAGCTCTC 59.702 50.000 0.00 0.00 37.07 3.20
1868 1876 2.609747 ACATGGGTGACTCAGTGTACT 58.390 47.619 0.00 0.00 0.00 2.73
1874 1882 2.274437 CGATGAACATGGGTGACTCAG 58.726 52.381 0.00 0.00 0.00 3.35
1910 1918 9.593134 CTAGTAGCTTTTCAGAAACATCTACAT 57.407 33.333 19.96 12.71 0.00 2.29
1923 1931 6.020971 TCATCAACGTCTAGTAGCTTTTCA 57.979 37.500 0.00 0.00 0.00 2.69
1939 1947 6.149973 TGTCCAACATCAGAAGAATCATCAAC 59.850 38.462 0.00 0.00 0.00 3.18
1943 1951 5.813383 ACTGTCCAACATCAGAAGAATCAT 58.187 37.500 0.00 0.00 35.84 2.45
1954 1962 2.351726 GGCGTTCATACTGTCCAACATC 59.648 50.000 0.00 0.00 0.00 3.06
1959 1967 2.011548 GCATGGCGTTCATACTGTCCA 61.012 52.381 0.00 0.00 34.12 4.02
1995 2003 7.089770 GGTCTCACCTTTATTTCCATTTCTC 57.910 40.000 0.00 0.00 34.73 2.87
2036 2044 6.365789 GCTGTACATACGTACTTTTGTAACCA 59.634 38.462 8.03 3.78 46.88 3.67
2156 2165 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
2157 2166 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
2158 2167 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
2159 2168 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
2161 2170 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2162 2171 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2164 2173 3.797353 TTCCCCGGCCTCTGCATC 61.797 66.667 0.00 0.00 40.13 3.91
2168 2177 4.410400 GTGGTTCCCCGGCCTCTG 62.410 72.222 0.00 0.00 0.00 3.35
2179 2188 3.916359 TTTTTGGAAAAGGGGTGGTTC 57.084 42.857 0.00 0.00 0.00 3.62
2205 2501 6.183347 CCACTTAATGACCTCTCTCCAATTT 58.817 40.000 0.00 0.00 0.00 1.82
2218 2514 6.170506 TGTCAAGGTATCACCACTTAATGAC 58.829 40.000 0.00 0.00 41.95 3.06
2362 2658 1.362768 GATCACATTGCTCGACTGCA 58.637 50.000 0.00 0.00 41.65 4.41
2412 2708 5.964477 TCCAGAATTGTTGGGTCTATACTCT 59.036 40.000 5.90 0.00 36.34 3.24
2432 2728 1.165270 GAATTCCCACGGTTGTCCAG 58.835 55.000 0.00 0.00 0.00 3.86
2443 2739 1.745115 CGAAGCCGCTGAATTCCCA 60.745 57.895 2.27 0.00 0.00 4.37
2482 2778 2.738846 CCAGTCCAAAGTCTTGTCATCG 59.261 50.000 0.00 0.00 0.00 3.84
2484 2780 2.443255 ACCCAGTCCAAAGTCTTGTCAT 59.557 45.455 0.00 0.00 0.00 3.06
2522 2875 9.515226 AAAGACTAGCTACATGGTTCAATAAAA 57.485 29.630 0.00 0.00 0.00 1.52
2543 2896 6.206829 AGGTTTTGTAGAACAGCCATAAAGAC 59.793 38.462 0.00 0.00 0.00 3.01
2557 2910 6.697641 ACTGGATTAGGAAGGTTTTGTAGA 57.302 37.500 0.00 0.00 0.00 2.59
2570 2923 9.658799 CTGTATGGTTCAATATACTGGATTAGG 57.341 37.037 0.00 0.00 32.37 2.69
2598 2951 9.358406 TCTGCAAATGAACATGAGGATTAATAT 57.642 29.630 0.00 0.00 0.00 1.28
2609 2962 4.921515 CACTTCCTTCTGCAAATGAACATG 59.078 41.667 0.00 0.00 0.00 3.21
2635 2988 4.456911 GGATCAGCTTTTGACATGAGAACA 59.543 41.667 0.00 0.00 38.99 3.18
2703 3056 7.764443 TCCTTGATTTAATACTCTCCTGTTTCG 59.236 37.037 0.00 0.00 0.00 3.46
2713 3066 8.908903 TCTCTCTGTCTCCTTGATTTAATACTC 58.091 37.037 0.00 0.00 0.00 2.59
2715 3068 8.691797 ACTCTCTCTGTCTCCTTGATTTAATAC 58.308 37.037 0.00 0.00 0.00 1.89
2721 3074 4.671831 TGACTCTCTCTGTCTCCTTGATT 58.328 43.478 0.00 0.00 35.63 2.57
2731 3084 2.894731 TGGGTCATTGACTCTCTCTGT 58.105 47.619 17.29 0.00 33.58 3.41
2749 3102 6.215121 TGATGTGTTGCTTCTGTATTTTTGG 58.785 36.000 0.00 0.00 0.00 3.28
2896 3249 5.470098 TGCTAAGGTGTCAAAGATCAAGAAC 59.530 40.000 0.00 0.00 0.00 3.01
2929 3282 5.750067 GCATATAAAGGCCACAACAAATGAG 59.250 40.000 5.01 0.00 0.00 2.90
2930 3283 5.659463 GCATATAAAGGCCACAACAAATGA 58.341 37.500 5.01 0.00 0.00 2.57
2980 3333 5.650543 ACAAAGATGAAACAGGTTGTGAAC 58.349 37.500 0.00 0.00 0.00 3.18
2994 3347 7.719633 AGGTGAGCTTTTTAGTTACAAAGATGA 59.280 33.333 0.00 0.00 32.56 2.92
3010 3363 1.708341 ATGCAAACCAGGTGAGCTTT 58.292 45.000 15.53 3.33 0.00 3.51
3079 3432 2.555123 CAACCATTGGAGACGTGGG 58.445 57.895 10.37 0.00 41.56 4.61
3091 3444 2.159198 GCAAATCAGAATCGCCAACCAT 60.159 45.455 0.00 0.00 0.00 3.55
3100 3453 3.010200 ACCAGGGAGCAAATCAGAATC 57.990 47.619 0.00 0.00 0.00 2.52
3135 3488 9.455847 GCCATTTTGCTATGAAAATAGTAAGAG 57.544 33.333 0.00 0.00 34.46 2.85
3167 3520 2.554032 CCAACCGAAAACTGAGCTTCAT 59.446 45.455 0.00 0.00 0.00 2.57
3196 3549 2.291411 ACTGAGCTTCATGGAAGGCAAT 60.291 45.455 7.97 0.00 39.76 3.56
3198 3551 0.694771 ACTGAGCTTCATGGAAGGCA 59.305 50.000 7.97 0.00 39.76 4.75
3201 3554 3.120060 CCGAAAACTGAGCTTCATGGAAG 60.120 47.826 1.67 1.67 42.03 3.46
3203 3556 2.224523 ACCGAAAACTGAGCTTCATGGA 60.225 45.455 0.00 0.00 0.00 3.41
3204 3557 2.154462 ACCGAAAACTGAGCTTCATGG 58.846 47.619 0.00 0.00 0.00 3.66
3206 3559 2.554032 CCAACCGAAAACTGAGCTTCAT 59.446 45.455 0.00 0.00 0.00 2.57
3209 3562 1.318576 CCCAACCGAAAACTGAGCTT 58.681 50.000 0.00 0.00 0.00 3.74
3211 3564 0.591659 GACCCAACCGAAAACTGAGC 59.408 55.000 0.00 0.00 0.00 4.26
3212 3565 1.961793 TGACCCAACCGAAAACTGAG 58.038 50.000 0.00 0.00 0.00 3.35
3213 3566 2.421751 TTGACCCAACCGAAAACTGA 57.578 45.000 0.00 0.00 0.00 3.41
3214 3567 2.164624 TGTTTGACCCAACCGAAAACTG 59.835 45.455 0.00 0.00 33.07 3.16
3215 3568 2.448453 TGTTTGACCCAACCGAAAACT 58.552 42.857 0.00 0.00 33.07 2.66
3216 3569 2.943449 TGTTTGACCCAACCGAAAAC 57.057 45.000 0.00 0.00 0.00 2.43
3217 3570 3.786635 CAATGTTTGACCCAACCGAAAA 58.213 40.909 0.00 0.00 0.00 2.29
3218 3571 2.482142 GCAATGTTTGACCCAACCGAAA 60.482 45.455 0.00 0.00 0.00 3.46
3219 3572 1.067821 GCAATGTTTGACCCAACCGAA 59.932 47.619 0.00 0.00 0.00 4.30
3220 3573 0.671251 GCAATGTTTGACCCAACCGA 59.329 50.000 0.00 0.00 0.00 4.69
3221 3574 0.319469 GGCAATGTTTGACCCAACCG 60.319 55.000 0.00 0.00 30.38 4.44
3222 3575 1.047801 AGGCAATGTTTGACCCAACC 58.952 50.000 0.00 0.00 40.48 3.77
3223 3576 2.547855 GGAAGGCAATGTTTGACCCAAC 60.548 50.000 0.00 0.00 40.48 3.77
3224 3577 1.691434 GGAAGGCAATGTTTGACCCAA 59.309 47.619 0.00 0.00 40.48 4.12
3225 3578 1.337118 GGAAGGCAATGTTTGACCCA 58.663 50.000 0.00 0.00 40.48 4.51
3226 3579 1.337118 TGGAAGGCAATGTTTGACCC 58.663 50.000 0.00 0.00 40.48 4.46
3227 3580 2.562298 TCATGGAAGGCAATGTTTGACC 59.438 45.455 0.00 0.00 40.48 4.02
3228 3581 3.940209 TCATGGAAGGCAATGTTTGAC 57.060 42.857 0.00 0.00 39.66 3.18
3229 3582 3.306225 GCTTCATGGAAGGCAATGTTTGA 60.306 43.478 7.97 0.00 39.76 2.69
3230 3583 2.997986 GCTTCATGGAAGGCAATGTTTG 59.002 45.455 7.97 0.00 39.76 2.93
3231 3584 2.901839 AGCTTCATGGAAGGCAATGTTT 59.098 40.909 7.97 0.00 39.76 2.83
3232 3585 2.494870 GAGCTTCATGGAAGGCAATGTT 59.505 45.455 7.97 0.00 39.76 2.71
3233 3586 2.097825 GAGCTTCATGGAAGGCAATGT 58.902 47.619 7.97 0.00 39.76 2.71
3234 3587 2.097036 TGAGCTTCATGGAAGGCAATG 58.903 47.619 7.97 0.00 39.76 2.82
3235 3588 2.291411 ACTGAGCTTCATGGAAGGCAAT 60.291 45.455 7.97 0.00 39.76 3.56
3236 3589 1.074405 ACTGAGCTTCATGGAAGGCAA 59.926 47.619 7.97 0.00 39.76 4.52
3237 3590 0.694771 ACTGAGCTTCATGGAAGGCA 59.305 50.000 7.97 0.00 39.76 4.75
3238 3591 1.831580 AACTGAGCTTCATGGAAGGC 58.168 50.000 7.97 1.28 39.76 4.35
3239 3592 3.120060 CGAAAACTGAGCTTCATGGAAGG 60.120 47.826 7.97 0.00 39.76 3.46
3240 3593 3.748048 TCGAAAACTGAGCTTCATGGAAG 59.252 43.478 1.67 1.67 42.03 3.46
3241 3594 3.738982 TCGAAAACTGAGCTTCATGGAA 58.261 40.909 0.00 0.00 0.00 3.53
3242 3595 3.401033 TCGAAAACTGAGCTTCATGGA 57.599 42.857 0.00 0.00 0.00 3.41
3243 3596 5.277683 CCATATCGAAAACTGAGCTTCATGG 60.278 44.000 0.00 0.00 0.00 3.66
3244 3597 5.745514 CCATATCGAAAACTGAGCTTCATG 58.254 41.667 0.00 0.00 0.00 3.07
3245 3598 4.274459 GCCATATCGAAAACTGAGCTTCAT 59.726 41.667 0.00 0.00 0.00 2.57
3246 3599 3.623060 GCCATATCGAAAACTGAGCTTCA 59.377 43.478 0.00 0.00 0.00 3.02
3247 3600 3.302740 CGCCATATCGAAAACTGAGCTTC 60.303 47.826 0.00 0.00 0.00 3.86
3248 3601 2.609459 CGCCATATCGAAAACTGAGCTT 59.391 45.455 0.00 0.00 0.00 3.74
3249 3602 2.205074 CGCCATATCGAAAACTGAGCT 58.795 47.619 0.00 0.00 0.00 4.09
3250 3603 1.333258 GCGCCATATCGAAAACTGAGC 60.333 52.381 0.00 0.00 0.00 4.26
3251 3604 2.205074 AGCGCCATATCGAAAACTGAG 58.795 47.619 2.29 0.00 0.00 3.35
3252 3605 2.201732 GAGCGCCATATCGAAAACTGA 58.798 47.619 2.29 0.00 0.00 3.41
3253 3606 1.933181 TGAGCGCCATATCGAAAACTG 59.067 47.619 2.29 0.00 0.00 3.16
3254 3607 2.309528 TGAGCGCCATATCGAAAACT 57.690 45.000 2.29 0.00 0.00 2.66
3255 3608 3.398954 TTTGAGCGCCATATCGAAAAC 57.601 42.857 2.29 0.00 0.00 2.43
3256 3609 4.630894 AATTTGAGCGCCATATCGAAAA 57.369 36.364 2.29 0.00 0.00 2.29
3257 3610 4.335315 AGAAATTTGAGCGCCATATCGAAA 59.665 37.500 2.29 0.00 0.00 3.46
3258 3611 3.876914 AGAAATTTGAGCGCCATATCGAA 59.123 39.130 2.29 0.91 0.00 3.71
3259 3612 3.248363 CAGAAATTTGAGCGCCATATCGA 59.752 43.478 2.29 0.00 0.00 3.59
3260 3613 3.548587 CAGAAATTTGAGCGCCATATCG 58.451 45.455 2.29 0.00 0.00 2.92
3261 3614 3.243168 TGCAGAAATTTGAGCGCCATATC 60.243 43.478 2.29 0.00 0.00 1.63
3262 3615 2.689471 TGCAGAAATTTGAGCGCCATAT 59.311 40.909 2.29 0.00 0.00 1.78
3263 3616 2.090760 TGCAGAAATTTGAGCGCCATA 58.909 42.857 2.29 0.00 0.00 2.74
3264 3617 0.889994 TGCAGAAATTTGAGCGCCAT 59.110 45.000 2.29 0.00 0.00 4.40
3265 3618 0.672889 TTGCAGAAATTTGAGCGCCA 59.327 45.000 2.29 0.00 0.00 5.69
3266 3619 1.657094 CATTGCAGAAATTTGAGCGCC 59.343 47.619 2.29 0.00 0.00 6.53
3267 3620 1.657094 CCATTGCAGAAATTTGAGCGC 59.343 47.619 0.00 0.00 0.00 5.92
3268 3621 2.950433 ACCATTGCAGAAATTTGAGCG 58.050 42.857 0.00 0.00 0.00 5.03
3308 3661 2.093447 GGAGGTTAGACCATGTCACAGG 60.093 54.545 0.00 0.00 41.95 4.00
3310 3663 2.301870 GTGGAGGTTAGACCATGTCACA 59.698 50.000 0.00 0.00 41.95 3.58
3313 3666 3.695830 TTGTGGAGGTTAGACCATGTC 57.304 47.619 0.00 0.00 41.95 3.06
3320 3673 7.893302 ACCATAAAATGAATTGTGGAGGTTAGA 59.107 33.333 9.40 0.00 42.37 2.10
3323 3676 6.933514 ACCATAAAATGAATTGTGGAGGTT 57.066 33.333 9.40 0.00 42.37 3.50
3369 3722 9.857656 ATCCAACAATGTTCATTAGATATGACT 57.142 29.630 0.00 0.00 0.00 3.41
3428 3781 9.772973 AATACAAGAGTGAACAGTACATTGTAA 57.227 29.630 0.00 0.00 36.72 2.41
3465 3818 4.039703 CGGTGATGAAAGCAATGCATTAG 58.960 43.478 12.53 7.98 28.10 1.73
3473 3826 1.159285 CTCTGCGGTGATGAAAGCAA 58.841 50.000 0.00 0.00 39.26 3.91
3506 3859 3.812156 ATTGTCATTGGATGTGGCATG 57.188 42.857 0.00 0.00 30.31 4.06
3507 3860 4.131649 CAATTGTCATTGGATGTGGCAT 57.868 40.909 0.00 0.00 36.82 4.40
3535 3888 7.072177 TCTCGTCTTTCAAATGCGAATAAAT 57.928 32.000 0.00 0.00 0.00 1.40
3540 3893 5.356882 AAATCTCGTCTTTCAAATGCGAA 57.643 34.783 0.00 0.00 0.00 4.70
3542 3895 4.091424 GGAAATCTCGTCTTTCAAATGCG 58.909 43.478 8.54 0.00 34.90 4.73
3553 3906 3.808728 TGATTCCATGGGAAATCTCGTC 58.191 45.455 20.92 4.55 45.41 4.20
3555 3908 5.581126 TTTTGATTCCATGGGAAATCTCG 57.419 39.130 20.92 0.00 45.41 4.04
3642 3998 3.888934 ACACTCAAGCGCATTGTTTTAG 58.111 40.909 11.47 7.23 40.05 1.85
3653 4009 3.132550 AGCGAGAGAGACACTCAAGCG 62.133 57.143 11.59 8.75 46.56 4.68
3680 4036 2.264480 CCTCACGAATCGCCCACA 59.736 61.111 1.15 0.00 0.00 4.17
3686 4042 1.084370 GGGAGTTGCCTCACGAATCG 61.084 60.000 0.00 0.00 39.64 3.34
3709 4065 0.102481 ACTTGCTAGGGTATGCGACG 59.898 55.000 0.00 0.00 0.00 5.12
3715 4071 1.411041 GGACGGACTTGCTAGGGTAT 58.589 55.000 0.00 0.00 0.00 2.73
3721 4077 1.335132 GGGATGGGACGGACTTGCTA 61.335 60.000 0.00 0.00 0.00 3.49
3731 4087 1.289244 ATGTGGAAGGGGGATGGGAC 61.289 60.000 0.00 0.00 0.00 4.46
3737 4093 2.308722 GGCTGATGTGGAAGGGGGA 61.309 63.158 0.00 0.00 0.00 4.81
3742 4098 1.741732 CGGAAGAGGCTGATGTGGAAG 60.742 57.143 0.00 0.00 0.00 3.46
3744 4100 0.904865 ACGGAAGAGGCTGATGTGGA 60.905 55.000 0.00 0.00 0.00 4.02
3746 4102 0.460987 GGACGGAAGAGGCTGATGTG 60.461 60.000 0.00 0.00 0.00 3.21
3747 4103 1.617947 GGGACGGAAGAGGCTGATGT 61.618 60.000 0.00 0.00 0.00 3.06
3748 4104 1.144936 GGGACGGAAGAGGCTGATG 59.855 63.158 0.00 0.00 0.00 3.07
3749 4105 1.002274 AGGGACGGAAGAGGCTGAT 59.998 57.895 0.00 0.00 0.00 2.90
3750 4106 1.682684 GAGGGACGGAAGAGGCTGA 60.683 63.158 0.00 0.00 0.00 4.26
3751 4107 2.726351 GGAGGGACGGAAGAGGCTG 61.726 68.421 0.00 0.00 0.00 4.85
3752 4108 2.364448 GGAGGGACGGAAGAGGCT 60.364 66.667 0.00 0.00 0.00 4.58
3764 4120 1.776662 TGATTCTACACCTCGGAGGG 58.223 55.000 26.94 17.80 40.58 4.30
3791 4147 1.956869 TGTCATCAGTCAGGGACCAT 58.043 50.000 0.00 0.00 32.18 3.55
3793 4149 1.673033 CGTTGTCATCAGTCAGGGACC 60.673 57.143 0.00 0.00 32.18 4.46
3801 4157 3.149981 TCTCAGAGTCGTTGTCATCAGT 58.850 45.455 0.00 0.00 0.00 3.41
3823 4179 4.742649 AGAGCTCGTCGGCCTCCA 62.743 66.667 8.37 0.00 0.00 3.86
3837 4193 2.103934 CGCGAGCTCCCTTGAGAG 59.896 66.667 8.47 0.00 41.42 3.20
3869 4225 2.055042 AGCACGGAGTAGAGCCAGG 61.055 63.158 0.00 0.00 41.61 4.45
3875 4231 1.591703 CAAGCCAGCACGGAGTAGA 59.408 57.895 0.00 0.00 41.61 2.59
3876 4232 2.103042 GCAAGCCAGCACGGAGTAG 61.103 63.158 0.00 0.00 41.61 2.57
3886 4242 1.593265 GAACCCCAATGCAAGCCAG 59.407 57.895 0.00 0.00 0.00 4.85
3894 4250 0.036164 TGTCGACTGGAACCCCAATG 59.964 55.000 17.92 0.00 42.98 2.82
3898 4254 2.047179 GCTGTCGACTGGAACCCC 60.047 66.667 21.94 2.62 0.00 4.95
3914 4270 1.016627 TTGAACATAGAGCGGCATGC 58.983 50.000 9.90 9.90 46.98 4.06
3926 4282 6.048732 ACCTTGACCTTTTGTTTTGAACAT 57.951 33.333 0.00 0.00 41.79 2.71
3941 4297 2.814336 AGCTCATTTTTCGACCTTGACC 59.186 45.455 0.00 0.00 0.00 4.02
3946 4302 3.070018 CACTGAGCTCATTTTTCGACCT 58.930 45.455 18.63 0.00 0.00 3.85
3961 4317 1.417890 ACACCTTGGGAAGACACTGAG 59.582 52.381 0.00 0.00 0.00 3.35
3965 4321 3.066760 CAGAAAACACCTTGGGAAGACAC 59.933 47.826 0.00 0.00 0.00 3.67
3972 4328 2.977772 TTTGCAGAAAACACCTTGGG 57.022 45.000 0.00 0.00 0.00 4.12
3973 4329 5.814705 TGTTAATTTGCAGAAAACACCTTGG 59.185 36.000 4.90 0.00 0.00 3.61
3976 4332 6.220726 AGTGTTAATTTGCAGAAAACACCT 57.779 33.333 23.76 14.53 46.98 4.00
3984 4340 6.405731 GCCCATCATTAGTGTTAATTTGCAGA 60.406 38.462 0.00 0.00 0.00 4.26
4000 4356 2.188829 CCATGCGACGCCCATCATT 61.189 57.895 18.69 0.00 0.00 2.57
4001 4357 2.592574 CCATGCGACGCCCATCAT 60.593 61.111 18.69 0.00 0.00 2.45
4002 4358 4.854924 CCCATGCGACGCCCATCA 62.855 66.667 18.69 0.00 0.00 3.07
4014 4372 2.203070 GTCAGCGTAGGGCCCATG 60.203 66.667 27.56 16.37 45.17 3.66
4015 4373 2.365635 AGTCAGCGTAGGGCCCAT 60.366 61.111 27.56 12.06 45.17 4.00
4017 4375 3.075005 TCAGTCAGCGTAGGGCCC 61.075 66.667 16.46 16.46 45.17 5.80
4041 4399 0.867746 CCATTATCCGTGCCGACATG 59.132 55.000 0.00 0.00 0.00 3.21
4047 4405 0.465460 TTCTGGCCATTATCCGTGCC 60.465 55.000 5.51 0.00 44.27 5.01
4049 4407 2.294233 CCATTTCTGGCCATTATCCGTG 59.706 50.000 5.51 0.00 35.23 4.94
4050 4408 2.586425 CCATTTCTGGCCATTATCCGT 58.414 47.619 5.51 0.00 35.23 4.69
4063 4421 3.703001 ACGACTCAATCCACCATTTCT 57.297 42.857 0.00 0.00 0.00 2.52
4079 4437 2.789893 GTCCATCTTATGAGCGAACGAC 59.210 50.000 0.00 0.00 0.00 4.34
4082 4440 3.179443 TGGTCCATCTTATGAGCGAAC 57.821 47.619 0.00 0.00 0.00 3.95
4094 4452 4.006319 CTCTTTGGTCTCTTTGGTCCATC 58.994 47.826 0.00 0.00 0.00 3.51
4106 4464 5.353394 TTGTACACACTTCTCTTTGGTCT 57.647 39.130 0.00 0.00 0.00 3.85
4111 4469 5.126067 AGCACATTGTACACACTTCTCTTT 58.874 37.500 0.00 0.00 0.00 2.52
4124 4496 2.671130 TGCGAGATGAGCACATTGTA 57.329 45.000 0.00 0.00 40.01 2.41
4125 4497 1.736126 CTTGCGAGATGAGCACATTGT 59.264 47.619 0.00 0.00 45.10 2.71
4141 4513 3.565902 AGCTTTGGTCAGTTAACTCTTGC 59.434 43.478 4.77 3.99 0.00 4.01
4143 4515 3.565902 GCAGCTTTGGTCAGTTAACTCTT 59.434 43.478 4.77 0.00 0.00 2.85
4150 4522 1.102978 AAACGCAGCTTTGGTCAGTT 58.897 45.000 0.00 0.00 0.00 3.16
4152 4524 2.744202 AGATAAACGCAGCTTTGGTCAG 59.256 45.455 0.00 0.00 0.00 3.51
4186 4558 9.408648 TGCGAATGGACTATCATCTATCTATTA 57.591 33.333 0.00 0.00 0.00 0.98
4190 4562 6.596309 TTGCGAATGGACTATCATCTATCT 57.404 37.500 0.00 0.00 0.00 1.98
4206 4578 3.126514 GCATATGCTAGATGCTTGCGAAT 59.873 43.478 20.64 0.00 45.14 3.34
4225 4597 1.068741 GGTCGGTCGAGATTAAGGCAT 59.931 52.381 0.00 0.00 0.00 4.40
4244 4616 1.280710 TGGCCATTAGGTACACACAGG 59.719 52.381 0.00 0.00 37.19 4.00
4294 4666 7.094162 GGTTCTGAGATCGATGGTCAAGATATA 60.094 40.741 0.54 0.00 0.00 0.86
4295 4667 6.295011 GGTTCTGAGATCGATGGTCAAGATAT 60.295 42.308 0.54 0.00 0.00 1.63
4304 4676 2.223923 GGAGTGGTTCTGAGATCGATGG 60.224 54.545 0.54 0.00 0.00 3.51
4306 4678 2.035632 GGGAGTGGTTCTGAGATCGAT 58.964 52.381 0.00 0.00 0.00 3.59
4307 4679 1.006043 AGGGAGTGGTTCTGAGATCGA 59.994 52.381 0.00 0.00 0.00 3.59
4308 4680 1.479709 AGGGAGTGGTTCTGAGATCG 58.520 55.000 0.00 0.00 0.00 3.69
4315 4688 3.009916 TCGTCTAGTTAGGGAGTGGTTCT 59.990 47.826 0.00 0.00 0.00 3.01
4321 4694 5.071519 TGCTACTATCGTCTAGTTAGGGAGT 59.928 44.000 5.90 0.00 0.00 3.85
4352 4725 5.063691 CACGTGGACGCTTTGGTATTTAATA 59.936 40.000 7.95 0.00 44.43 0.98
4357 4730 1.153353 CACGTGGACGCTTTGGTATT 58.847 50.000 7.95 0.00 44.43 1.89
4362 4735 1.010125 CAACCACGTGGACGCTTTG 60.010 57.895 40.21 27.55 44.43 2.77
4370 4743 0.601576 TGATCGGTTCAACCACGTGG 60.602 55.000 32.83 32.83 38.47 4.94
4371 4744 0.790207 CTGATCGGTTCAACCACGTG 59.210 55.000 9.08 9.08 38.47 4.49
4373 4746 0.948623 TGCTGATCGGTTCAACCACG 60.949 55.000 7.52 0.00 38.47 4.94
4417 4790 7.806409 ATTTTGATGCCTAAAGTTGCTTTTT 57.194 28.000 0.00 0.00 35.21 1.94
4418 4791 8.900983 TTATTTTGATGCCTAAAGTTGCTTTT 57.099 26.923 0.00 0.00 35.21 2.27
4419 4792 8.900983 TTTATTTTGATGCCTAAAGTTGCTTT 57.099 26.923 0.00 0.00 37.46 3.51
4420 4793 8.938906 CATTTATTTTGATGCCTAAAGTTGCTT 58.061 29.630 0.00 0.00 0.00 3.91
4421 4794 7.550196 CCATTTATTTTGATGCCTAAAGTTGCT 59.450 33.333 0.00 0.00 0.00 3.91
4422 4795 7.677041 GCCATTTATTTTGATGCCTAAAGTTGC 60.677 37.037 0.00 0.00 0.00 4.17
4423 4796 7.550196 AGCCATTTATTTTGATGCCTAAAGTTG 59.450 33.333 0.00 0.00 0.00 3.16
4432 4805 6.724694 TTGTTCAGCCATTTATTTTGATGC 57.275 33.333 0.00 0.00 0.00 3.91
4458 4831 4.210120 CGAGATTTAAGGCACATGCTAGAC 59.790 45.833 3.48 0.00 41.70 2.59
4488 4861 6.425721 TGTTAGTGCAAGTGTCCATTAAGTAC 59.574 38.462 0.00 0.00 0.00 2.73
4499 4872 5.871524 CAGATATCACTGTTAGTGCAAGTGT 59.128 40.000 13.67 5.85 45.54 3.55
4503 4876 6.591448 CAGTTCAGATATCACTGTTAGTGCAA 59.409 38.462 5.32 0.00 45.54 4.08
4508 4881 8.633561 TCATACCAGTTCAGATATCACTGTTAG 58.366 37.037 16.36 7.49 36.90 2.34
4509 4882 8.533569 TCATACCAGTTCAGATATCACTGTTA 57.466 34.615 16.36 9.86 36.90 2.41
4519 4892 8.262601 TGGTGTTATATCATACCAGTTCAGAT 57.737 34.615 1.63 0.00 38.23 2.90
4520 4893 7.669089 TGGTGTTATATCATACCAGTTCAGA 57.331 36.000 1.63 0.00 38.23 3.27
4527 4900 7.373617 ACATCACTGGTGTTATATCATACCA 57.626 36.000 5.51 5.51 40.67 3.25
4528 4901 9.944376 AATACATCACTGGTGTTATATCATACC 57.056 33.333 0.00 0.00 0.00 2.73
4530 4903 9.942850 CCAATACATCACTGGTGTTATATCATA 57.057 33.333 0.00 0.00 0.00 2.15
4531 4904 8.439971 ACCAATACATCACTGGTGTTATATCAT 58.560 33.333 0.00 0.00 41.95 2.45
4532 4905 7.801104 ACCAATACATCACTGGTGTTATATCA 58.199 34.615 0.00 0.00 41.95 2.15
4533 4906 8.677148 AACCAATACATCACTGGTGTTATATC 57.323 34.615 0.00 0.00 42.72 1.63
4534 4907 9.120538 GAAACCAATACATCACTGGTGTTATAT 57.879 33.333 0.00 0.00 42.72 0.86
4535 4908 8.325787 AGAAACCAATACATCACTGGTGTTATA 58.674 33.333 0.00 0.00 42.72 0.98
4536 4909 7.175104 AGAAACCAATACATCACTGGTGTTAT 58.825 34.615 0.00 0.00 42.72 1.89
4537 4910 6.539173 AGAAACCAATACATCACTGGTGTTA 58.461 36.000 0.00 0.00 42.72 2.41
4538 4911 5.385198 AGAAACCAATACATCACTGGTGTT 58.615 37.500 0.00 0.00 42.72 3.32
4539 4912 4.985538 AGAAACCAATACATCACTGGTGT 58.014 39.130 0.00 0.00 42.72 4.16
4540 4913 6.173339 AGTAGAAACCAATACATCACTGGTG 58.827 40.000 0.00 0.00 42.72 4.17
4541 4914 6.374417 AGTAGAAACCAATACATCACTGGT 57.626 37.500 0.00 0.00 45.50 4.00
4542 4915 8.830580 CATTAGTAGAAACCAATACATCACTGG 58.169 37.037 0.00 0.00 36.24 4.00
4543 4916 8.830580 CCATTAGTAGAAACCAATACATCACTG 58.169 37.037 0.00 0.00 0.00 3.66
4544 4917 8.768397 TCCATTAGTAGAAACCAATACATCACT 58.232 33.333 0.00 0.00 0.00 3.41
4545 4918 8.958119 TCCATTAGTAGAAACCAATACATCAC 57.042 34.615 0.00 0.00 0.00 3.06
4546 4919 9.967451 TTTCCATTAGTAGAAACCAATACATCA 57.033 29.630 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.