Multiple sequence alignment - TraesCS3A01G529200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G529200 chr3A 100.000 3726 0 0 1 3726 742873958 742870233 0.000000e+00 6881
1 TraesCS3A01G529200 chr3A 83.438 960 148 8 1767 2719 742313762 742314717 0.000000e+00 881
2 TraesCS3A01G529200 chr3A 85.236 508 62 9 988 1495 742332247 742332741 9.230000e-141 510
3 TraesCS3A01G529200 chr3A 84.569 499 62 6 1000 1498 742355430 742355913 7.240000e-132 481
4 TraesCS3A01G529200 chr3D 92.840 2109 137 9 602 2705 609287646 609285547 0.000000e+00 3046
5 TraesCS3A01G529200 chr3D 87.317 1159 127 9 1557 2710 609005508 609006651 0.000000e+00 1308
6 TraesCS3A01G529200 chr3D 86.626 1144 148 2 1572 2710 608952004 608953147 0.000000e+00 1260
7 TraesCS3A01G529200 chr3D 92.947 397 24 3 2547 2942 609279586 609279193 3.230000e-160 575
8 TraesCS3A01G529200 chr3D 85.714 511 60 9 985 1495 608950880 608951377 9.170000e-146 527
9 TraesCS3A01G529200 chr3D 85.200 500 63 7 1000 1498 609004616 609005105 1.540000e-138 503
10 TraesCS3A01G529200 chr3D 80.630 413 61 13 102 502 609288213 609287808 6.050000e-78 302
11 TraesCS3A01G529200 chr3D 92.208 77 6 0 1 77 609288283 609288207 3.930000e-20 110
12 TraesCS3A01G529200 chr2D 87.312 1726 184 22 980 2698 623438017 623439714 0.000000e+00 1941
13 TraesCS3A01G529200 chr2B 85.288 1339 141 20 980 2311 765454627 765455916 0.000000e+00 1330
14 TraesCS3A01G529200 chr3B 87.002 1154 139 10 1572 2719 819651191 819652339 0.000000e+00 1290
15 TraesCS3A01G529200 chr3B 85.813 1156 149 10 1572 2719 819382290 819383438 0.000000e+00 1212
16 TraesCS3A01G529200 chr3B 85.542 1162 147 17 1572 2719 819523093 819524247 0.000000e+00 1195
17 TraesCS3A01G529200 chr3B 85.320 1158 154 14 1572 2719 819300060 819301211 0.000000e+00 1182
18 TraesCS3A01G529200 chr3B 85.714 511 57 9 985 1495 819522383 819522877 3.300000e-145 525
19 TraesCS3A01G529200 chr3B 85.519 511 61 9 985 1495 819650032 819650529 4.260000e-144 521
20 TraesCS3A01G529200 chr3B 84.570 512 65 10 985 1495 819298141 819298639 2.580000e-136 496
21 TraesCS3A01G529200 chr7A 92.848 783 49 5 2943 3722 38977681 38976903 0.000000e+00 1129
22 TraesCS3A01G529200 chr7A 92.522 789 48 6 2943 3724 38983161 38982377 0.000000e+00 1120
23 TraesCS3A01G529200 chr7A 92.484 785 52 4 2943 3724 38972193 38971413 0.000000e+00 1116
24 TraesCS3A01G529200 chr7A 84.615 338 37 11 3394 3723 40733966 40733636 4.640000e-84 322
25 TraesCS3A01G529200 chr5B 91.858 786 46 8 2943 3724 278026568 278025797 0.000000e+00 1081
26 TraesCS3A01G529200 chr5B 91.614 787 48 8 2942 3724 272441292 272442064 0.000000e+00 1072
27 TraesCS3A01G529200 chr5B 90.064 785 42 9 2945 3724 549556882 549557635 0.000000e+00 985
28 TraesCS3A01G529200 chr7B 91.730 786 47 8 2943 3724 706675857 706676628 0.000000e+00 1075
29 TraesCS3A01G529200 chr7B 89.400 500 35 8 2934 3429 706681512 706681997 6.840000e-172 614
30 TraesCS3A01G529200 chr4B 91.624 788 48 8 2941 3724 654028959 654029732 0.000000e+00 1074
31 TraesCS3A01G529200 chr5A 91.614 787 48 8 2942 3724 534561715 534562487 0.000000e+00 1072


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G529200 chr3A 742870233 742873958 3725 True 6881.000000 6881 100.000000 1 3726 1 chr3A.!!$R1 3725
1 TraesCS3A01G529200 chr3A 742313762 742314717 955 False 881.000000 881 83.438000 1767 2719 1 chr3A.!!$F1 952
2 TraesCS3A01G529200 chr3D 609285547 609288283 2736 True 1152.666667 3046 88.559333 1 2705 3 chr3D.!!$R2 2704
3 TraesCS3A01G529200 chr3D 609004616 609006651 2035 False 905.500000 1308 86.258500 1000 2710 2 chr3D.!!$F2 1710
4 TraesCS3A01G529200 chr3D 608950880 608953147 2267 False 893.500000 1260 86.170000 985 2710 2 chr3D.!!$F1 1725
5 TraesCS3A01G529200 chr2D 623438017 623439714 1697 False 1941.000000 1941 87.312000 980 2698 1 chr2D.!!$F1 1718
6 TraesCS3A01G529200 chr2B 765454627 765455916 1289 False 1330.000000 1330 85.288000 980 2311 1 chr2B.!!$F1 1331
7 TraesCS3A01G529200 chr3B 819382290 819383438 1148 False 1212.000000 1212 85.813000 1572 2719 1 chr3B.!!$F1 1147
8 TraesCS3A01G529200 chr3B 819650032 819652339 2307 False 905.500000 1290 86.260500 985 2719 2 chr3B.!!$F4 1734
9 TraesCS3A01G529200 chr3B 819522383 819524247 1864 False 860.000000 1195 85.628000 985 2719 2 chr3B.!!$F3 1734
10 TraesCS3A01G529200 chr3B 819298141 819301211 3070 False 839.000000 1182 84.945000 985 2719 2 chr3B.!!$F2 1734
11 TraesCS3A01G529200 chr7A 38976903 38977681 778 True 1129.000000 1129 92.848000 2943 3722 1 chr7A.!!$R2 779
12 TraesCS3A01G529200 chr7A 38982377 38983161 784 True 1120.000000 1120 92.522000 2943 3724 1 chr7A.!!$R3 781
13 TraesCS3A01G529200 chr7A 38971413 38972193 780 True 1116.000000 1116 92.484000 2943 3724 1 chr7A.!!$R1 781
14 TraesCS3A01G529200 chr5B 278025797 278026568 771 True 1081.000000 1081 91.858000 2943 3724 1 chr5B.!!$R1 781
15 TraesCS3A01G529200 chr5B 272441292 272442064 772 False 1072.000000 1072 91.614000 2942 3724 1 chr5B.!!$F1 782
16 TraesCS3A01G529200 chr5B 549556882 549557635 753 False 985.000000 985 90.064000 2945 3724 1 chr5B.!!$F2 779
17 TraesCS3A01G529200 chr7B 706675857 706676628 771 False 1075.000000 1075 91.730000 2943 3724 1 chr7B.!!$F1 781
18 TraesCS3A01G529200 chr4B 654028959 654029732 773 False 1074.000000 1074 91.624000 2941 3724 1 chr4B.!!$F1 783
19 TraesCS3A01G529200 chr5A 534561715 534562487 772 False 1072.000000 1072 91.614000 2942 3724 1 chr5A.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 360 0.032615 TTGGGGTGCCAAAGTCTTGT 60.033 50.0 0.00 0.00 0.00 3.16 F
522 563 0.037326 GATGACTGTGGCCTCGTTGA 60.037 55.0 3.32 0.00 0.00 3.18 F
530 571 0.107643 TGGCCTCGTTGACATTGTCA 59.892 50.0 15.41 15.41 41.09 3.58 F
1314 1392 0.179000 GGGAGGTGATGAAGACGCAT 59.821 55.0 0.00 0.00 0.00 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 4044 0.321653 GCGGTGGTTTCCAGATCAGT 60.322 55.000 0.00 0.0 32.34 3.41 R
2385 4262 0.459899 AGCGTTCACATAGATCCGCA 59.540 50.000 10.53 0.0 44.57 5.69 R
2581 4458 2.104281 GTGGTATAGTAGGTTGGCCAGG 59.896 54.545 5.11 0.0 37.19 4.45 R
2736 4613 0.032515 TAGGAAGCCTCCATCGGACA 60.033 55.000 3.68 0.0 45.24 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.540101 GTGCCTTAAATCTCGATCGGTG 59.460 50.000 16.41 8.93 0.00 4.94
57 58 4.201657 TCTCGATCGGTGTACTTAATGGA 58.798 43.478 16.41 0.00 0.00 3.41
61 62 4.439700 CGATCGGTGTACTTAATGGACACT 60.440 45.833 7.38 2.22 42.50 3.55
66 67 4.083484 GGTGTACTTAATGGACACTTGCAC 60.083 45.833 15.56 0.00 42.50 4.57
67 68 4.755123 GTGTACTTAATGGACACTTGCACT 59.245 41.667 11.14 0.00 40.26 4.40
88 89 6.859112 ACTAACAGTGATATCTGAACTGGT 57.141 37.500 20.04 17.44 44.49 4.00
89 90 7.956328 ACTAACAGTGATATCTGAACTGGTA 57.044 36.000 20.04 17.58 44.49 3.25
90 91 8.540507 ACTAACAGTGATATCTGAACTGGTAT 57.459 34.615 20.04 11.56 41.84 2.73
91 92 8.417106 ACTAACAGTGATATCTGAACTGGTATG 58.583 37.037 20.04 14.95 41.84 2.39
92 93 7.423844 AACAGTGATATCTGAACTGGTATGA 57.576 36.000 20.04 0.00 44.49 2.15
93 94 7.609097 ACAGTGATATCTGAACTGGTATGAT 57.391 36.000 20.04 2.14 44.49 2.45
94 95 8.712228 ACAGTGATATCTGAACTGGTATGATA 57.288 34.615 20.04 0.00 44.49 2.15
95 96 9.319060 ACAGTGATATCTGAACTGGTATGATAT 57.681 33.333 20.04 0.00 44.49 1.63
102 103 7.669089 TCTGAACTGGTATGATATAACACCA 57.331 36.000 0.00 0.00 38.72 4.17
119 120 4.985538 ACACCAGTGATGTATTGGTTTCT 58.014 39.130 4.48 0.00 46.23 2.52
142 143 9.901172 TTCTACTAATGGAAATTAGGGAGAAAC 57.099 33.333 15.53 0.00 37.32 2.78
206 213 6.266558 ACCTGAACAAATACTTACCAATTGCA 59.733 34.615 0.00 0.00 0.00 4.08
210 217 7.436673 TGAACAAATACTTACCAATTGCAACAC 59.563 33.333 0.00 0.00 0.00 3.32
213 220 6.892658 AATACTTACCAATTGCAACACTGA 57.107 33.333 0.00 0.00 0.00 3.41
215 222 3.003275 ACTTACCAATTGCAACACTGACG 59.997 43.478 0.00 0.00 0.00 4.35
233 240 2.997986 GACGTGTGTACCTACCAATTGG 59.002 50.000 23.31 23.31 42.17 3.16
234 241 2.633967 ACGTGTGTACCTACCAATTGGA 59.366 45.455 31.22 13.31 38.94 3.53
249 256 9.757227 CTACCAATTGGAGTATAGAAGAAAGAG 57.243 37.037 31.22 0.00 38.94 2.85
251 258 8.261522 ACCAATTGGAGTATAGAAGAAAGAGAC 58.738 37.037 31.22 0.00 38.94 3.36
252 259 7.436673 CCAATTGGAGTATAGAAGAAAGAGACG 59.563 40.741 20.50 0.00 37.39 4.18
262 269 3.152261 AGAAAGAGACGTTATCTGCGG 57.848 47.619 5.14 0.00 38.00 5.69
263 270 1.588861 GAAAGAGACGTTATCTGCGGC 59.411 52.381 5.14 0.00 38.00 6.53
267 274 0.530744 AGACGTTATCTGCGGCAGAA 59.469 50.000 33.72 20.59 44.04 3.02
268 275 1.067142 AGACGTTATCTGCGGCAGAAA 60.067 47.619 33.72 24.38 44.04 2.52
274 281 1.609208 ATCTGCGGCAGAAACAAACT 58.391 45.000 33.72 14.89 44.04 2.66
281 288 4.202060 TGCGGCAGAAACAAACTTTTATCA 60.202 37.500 0.00 0.00 0.00 2.15
285 292 6.152379 GGCAGAAACAAACTTTTATCAGAGG 58.848 40.000 0.00 0.00 0.00 3.69
308 315 6.260050 AGGTTCTTACAAACACACACATACAG 59.740 38.462 0.00 0.00 0.00 2.74
312 319 8.270080 TCTTACAAACACACACATACAGAAAA 57.730 30.769 0.00 0.00 0.00 2.29
338 346 6.796785 AAAATTACATTCAGATCCTTGGGG 57.203 37.500 0.00 0.00 0.00 4.96
341 349 1.341383 ACATTCAGATCCTTGGGGTGC 60.341 52.381 0.00 0.00 0.00 5.01
343 351 1.139498 TTCAGATCCTTGGGGTGCCA 61.139 55.000 0.00 0.00 0.00 4.92
351 359 0.675633 CTTGGGGTGCCAAAGTCTTG 59.324 55.000 0.00 0.00 0.00 3.02
352 360 0.032615 TTGGGGTGCCAAAGTCTTGT 60.033 50.000 0.00 0.00 0.00 3.16
354 362 0.673985 GGGGTGCCAAAGTCTTGTTC 59.326 55.000 0.00 0.00 0.00 3.18
356 364 1.692411 GGTGCCAAAGTCTTGTTCCT 58.308 50.000 0.00 0.00 0.00 3.36
357 365 1.338020 GGTGCCAAAGTCTTGTTCCTG 59.662 52.381 0.00 0.00 0.00 3.86
359 367 1.064017 TGCCAAAGTCTTGTTCCTGGT 60.064 47.619 0.00 0.00 0.00 4.00
360 368 1.338020 GCCAAAGTCTTGTTCCTGGTG 59.662 52.381 0.00 0.00 0.00 4.17
361 369 1.338020 CCAAAGTCTTGTTCCTGGTGC 59.662 52.381 0.00 0.00 0.00 5.01
362 370 2.023673 CAAAGTCTTGTTCCTGGTGCA 58.976 47.619 0.00 0.00 0.00 4.57
363 371 1.972872 AAGTCTTGTTCCTGGTGCAG 58.027 50.000 0.00 0.00 0.00 4.41
364 372 0.536006 AGTCTTGTTCCTGGTGCAGC 60.536 55.000 9.47 9.47 0.00 5.25
365 373 1.228245 TCTTGTTCCTGGTGCAGCC 60.228 57.895 14.36 5.89 37.90 4.85
390 398 2.112815 GGCACACCGGGAGCATAAC 61.113 63.158 6.32 0.00 0.00 1.89
396 404 0.104304 ACCGGGAGCATAACACGATC 59.896 55.000 6.32 0.00 36.15 3.69
405 413 1.611977 CATAACACGATCCCGCCTCTA 59.388 52.381 0.00 0.00 39.95 2.43
407 415 1.392710 AACACGATCCCGCCTCTAGG 61.393 60.000 0.00 0.00 39.95 3.02
456 464 1.889545 AGAAGCAGTGGTTGAGAAGC 58.110 50.000 13.24 0.00 0.00 3.86
469 477 1.400846 TGAGAAGCCGTCGATGTAGAC 59.599 52.381 3.52 0.00 37.76 2.59
471 479 0.454600 GAAGCCGTCGATGTAGACCA 59.545 55.000 3.52 0.00 37.85 4.02
474 482 1.381928 GCCGTCGATGTAGACCAGGA 61.382 60.000 3.52 0.00 37.85 3.86
477 485 2.222886 CGTCGATGTAGACCAGGAGAT 58.777 52.381 0.00 0.00 37.85 2.75
480 488 1.683385 CGATGTAGACCAGGAGATGCA 59.317 52.381 0.00 0.00 0.00 3.96
482 490 3.661944 GATGTAGACCAGGAGATGCATG 58.338 50.000 2.46 0.00 0.00 4.06
484 492 3.642141 TGTAGACCAGGAGATGCATGTA 58.358 45.455 2.46 0.00 0.00 2.29
495 536 7.157347 CAGGAGATGCATGTATTATGTACTGT 58.843 38.462 2.46 0.00 0.00 3.55
502 543 8.642908 TGCATGTATTATGTACTGTACTTGTC 57.357 34.615 17.98 5.77 0.00 3.18
510 551 5.043189 TGTACTGTACTTGTCGATGACTG 57.957 43.478 17.98 0.00 33.15 3.51
522 563 0.037326 GATGACTGTGGCCTCGTTGA 60.037 55.000 3.32 0.00 0.00 3.18
524 565 1.069090 GACTGTGGCCTCGTTGACA 59.931 57.895 3.32 0.00 0.00 3.58
526 567 0.108585 ACTGTGGCCTCGTTGACATT 59.891 50.000 3.32 0.00 0.00 2.71
527 568 0.518636 CTGTGGCCTCGTTGACATTG 59.481 55.000 3.32 0.00 0.00 2.82
528 569 0.179032 TGTGGCCTCGTTGACATTGT 60.179 50.000 3.32 0.00 0.00 2.71
529 570 0.517316 GTGGCCTCGTTGACATTGTC 59.483 55.000 9.93 9.93 0.00 3.18
530 571 0.107643 TGGCCTCGTTGACATTGTCA 59.892 50.000 15.41 15.41 41.09 3.58
566 607 8.387190 AGATGGTTGTGTGTATCATATTGATG 57.613 34.615 0.30 0.00 37.70 3.07
567 608 6.375945 TGGTTGTGTGTATCATATTGATGC 57.624 37.500 0.30 0.00 37.70 3.91
577 652 4.890158 TCATATTGATGCATAGACCCGT 57.110 40.909 0.00 0.00 32.62 5.28
579 654 6.544928 TCATATTGATGCATAGACCCGTAT 57.455 37.500 0.00 0.00 32.62 3.06
592 667 3.197116 AGACCCGTATTACAACCTCCTTG 59.803 47.826 0.00 0.00 35.77 3.61
593 668 3.175594 ACCCGTATTACAACCTCCTTGA 58.824 45.455 0.00 0.00 33.59 3.02
594 669 3.197116 ACCCGTATTACAACCTCCTTGAG 59.803 47.826 0.00 0.00 33.59 3.02
595 670 3.449737 CCCGTATTACAACCTCCTTGAGA 59.550 47.826 0.00 0.00 33.59 3.27
596 671 4.081309 CCCGTATTACAACCTCCTTGAGAA 60.081 45.833 0.00 0.00 33.59 2.87
597 672 4.868734 CCGTATTACAACCTCCTTGAGAAC 59.131 45.833 0.00 0.00 33.59 3.01
598 673 4.868734 CGTATTACAACCTCCTTGAGAACC 59.131 45.833 0.00 0.00 33.59 3.62
599 674 4.993705 ATTACAACCTCCTTGAGAACCA 57.006 40.909 0.00 0.00 33.59 3.67
600 675 4.781775 TTACAACCTCCTTGAGAACCAA 57.218 40.909 0.00 0.00 33.59 3.67
620 695 7.503521 ACCAACAACAACAAAAAGAAAACAT 57.496 28.000 0.00 0.00 0.00 2.71
692 767 3.755628 CTGCATGCACAGGGTGGC 61.756 66.667 18.46 0.00 33.64 5.01
722 797 4.360964 TGTTGCAAGCATGGCGCC 62.361 61.111 22.73 22.73 38.51 6.53
737 812 1.601430 GGCGCCAAATGAGAGATTCTC 59.399 52.381 24.80 5.49 43.65 2.87
742 817 5.065218 GCGCCAAATGAGAGATTCTCTTTTA 59.935 40.000 17.11 7.92 44.15 1.52
766 841 3.987220 ACTTTGTGCATAAAACAATCGCC 59.013 39.130 10.01 0.00 37.38 5.54
767 842 3.650070 TTGTGCATAAAACAATCGCCA 57.350 38.095 0.00 0.00 32.71 5.69
768 843 3.650070 TGTGCATAAAACAATCGCCAA 57.350 38.095 0.00 0.00 0.00 4.52
769 844 3.982475 TGTGCATAAAACAATCGCCAAA 58.018 36.364 0.00 0.00 0.00 3.28
771 846 4.388165 TGTGCATAAAACAATCGCCAAATG 59.612 37.500 0.00 0.00 0.00 2.32
772 847 4.624882 GTGCATAAAACAATCGCCAAATGA 59.375 37.500 0.00 0.00 0.00 2.57
773 848 4.863689 TGCATAAAACAATCGCCAAATGAG 59.136 37.500 0.00 0.00 0.00 2.90
774 849 5.101628 GCATAAAACAATCGCCAAATGAGA 58.898 37.500 0.00 0.00 0.00 3.27
821 896 1.061570 GGCAGCTCAATCGCTTTCG 59.938 57.895 0.00 0.00 38.41 3.46
822 897 1.582168 GCAGCTCAATCGCTTTCGC 60.582 57.895 0.00 0.00 38.41 4.70
841 918 3.187432 TCGCGTGATTAAACTGATGCAAA 59.813 39.130 5.77 0.00 0.00 3.68
842 919 4.097714 CGCGTGATTAAACTGATGCAAAT 58.902 39.130 0.00 0.00 0.00 2.32
978 1056 1.605753 AAAAGGAAACTCTGCGTCCC 58.394 50.000 0.00 0.00 42.68 4.46
1014 1092 4.574674 AACTCAAATGGCCATCTCACTA 57.425 40.909 21.08 0.84 0.00 2.74
1059 1137 2.731572 CAACAATGGCAGATCCTCCTT 58.268 47.619 0.00 0.00 35.26 3.36
1069 1147 0.266152 GATCCTCCTTCTCCCCCTCA 59.734 60.000 0.00 0.00 0.00 3.86
1075 1153 1.118356 CCTTCTCCCCCTCATCCTCG 61.118 65.000 0.00 0.00 0.00 4.63
1078 1156 1.231641 CTCCCCCTCATCCTCGTCT 59.768 63.158 0.00 0.00 0.00 4.18
1083 1161 1.133450 CCCCTCATCCTCGTCTTCCTA 60.133 57.143 0.00 0.00 0.00 2.94
1112 1190 1.474879 CTTCTTGACGAGGAGGAGACC 59.525 57.143 0.00 0.00 0.00 3.85
1113 1191 0.404426 TCTTGACGAGGAGGAGACCA 59.596 55.000 0.00 0.00 0.00 4.02
1314 1392 0.179000 GGGAGGTGATGAAGACGCAT 59.821 55.000 0.00 0.00 0.00 4.73
1515 1594 8.567948 CAGGTATGGCCACTACTATTTAATTTG 58.432 37.037 8.16 0.00 40.61 2.32
1559 3404 5.779922 TCGAGGAACACCATATAGTTATGC 58.220 41.667 0.00 0.00 34.94 3.14
1712 3569 1.238439 CAACAGCGACAAGTTCCCAT 58.762 50.000 0.00 0.00 0.00 4.00
1759 3616 2.669569 GAGGCCACACACGTGCAT 60.670 61.111 17.22 0.00 42.17 3.96
1809 3668 1.331756 CAACATCATTGGACGCCTAGC 59.668 52.381 0.00 0.00 0.00 3.42
1938 3797 1.374947 ACAATGGTGACCTCGTGGG 59.625 57.895 8.63 2.00 41.89 4.61
1987 3846 0.250901 GTGGCACCCTCAACATCACT 60.251 55.000 6.29 0.00 0.00 3.41
2089 3958 7.180322 AGATCAACTAACTGACATCACTCAT 57.820 36.000 0.00 0.00 0.00 2.90
2091 3960 5.402398 TCAACTAACTGACATCACTCATCG 58.598 41.667 0.00 0.00 0.00 3.84
2100 3973 1.804748 CATCACTCATCGCCATGGATG 59.195 52.381 18.40 11.70 44.10 3.51
2167 4044 1.053835 TCCTATGGGCGATGGCAGAA 61.054 55.000 1.01 0.00 42.47 3.02
2185 4062 2.076863 GAACTGATCTGGAAACCACCG 58.923 52.381 4.49 0.00 0.00 4.94
2385 4262 1.966901 TATGACGTGCCGGCCAAGAT 61.967 55.000 26.77 11.95 31.60 2.40
2404 4281 3.274393 GCGGATCTATGTGAACGCT 57.726 52.632 0.00 0.00 45.29 5.07
2581 4458 2.668550 GCCACCGTGGAGTTCACC 60.669 66.667 22.37 0.00 40.96 4.02
2593 4470 0.770557 AGTTCACCCTGGCCAACCTA 60.771 55.000 7.01 0.00 36.63 3.08
2601 4478 2.404559 CCTGGCCAACCTACTATACCA 58.595 52.381 7.01 0.00 36.63 3.25
2698 4575 2.743718 CTCGTTCTGGTGCCCACT 59.256 61.111 0.00 0.00 0.00 4.00
2699 4576 1.972198 CTCGTTCTGGTGCCCACTA 59.028 57.895 0.00 0.00 0.00 2.74
2710 4587 0.988063 TGCCCACTACATACCAGCAA 59.012 50.000 0.00 0.00 0.00 3.91
2711 4588 1.065491 TGCCCACTACATACCAGCAAG 60.065 52.381 0.00 0.00 0.00 4.01
2712 4589 1.668419 CCCACTACATACCAGCAAGC 58.332 55.000 0.00 0.00 0.00 4.01
2713 4590 1.065491 CCCACTACATACCAGCAAGCA 60.065 52.381 0.00 0.00 0.00 3.91
2714 4591 2.617788 CCCACTACATACCAGCAAGCAA 60.618 50.000 0.00 0.00 0.00 3.91
2716 4593 3.127548 CCACTACATACCAGCAAGCAAAG 59.872 47.826 0.00 0.00 0.00 2.77
2717 4594 2.749621 ACTACATACCAGCAAGCAAAGC 59.250 45.455 0.00 0.00 0.00 3.51
2718 4595 1.619654 ACATACCAGCAAGCAAAGCA 58.380 45.000 0.00 0.00 0.00 3.91
2720 4597 2.029649 ACATACCAGCAAGCAAAGCAAG 60.030 45.455 0.00 0.00 0.00 4.01
2721 4598 1.691196 TACCAGCAAGCAAAGCAAGT 58.309 45.000 0.00 0.00 0.00 3.16
2722 4599 0.386838 ACCAGCAAGCAAAGCAAGTC 59.613 50.000 0.00 0.00 0.00 3.01
2723 4600 0.672342 CCAGCAAGCAAAGCAAGTCT 59.328 50.000 0.00 0.00 0.00 3.24
2724 4601 1.602165 CCAGCAAGCAAAGCAAGTCTG 60.602 52.381 0.00 0.00 0.00 3.51
2725 4602 1.335810 CAGCAAGCAAAGCAAGTCTGA 59.664 47.619 0.00 0.00 0.00 3.27
2726 4603 2.030185 CAGCAAGCAAAGCAAGTCTGAT 60.030 45.455 0.00 0.00 0.00 2.90
2727 4604 2.626743 AGCAAGCAAAGCAAGTCTGATT 59.373 40.909 0.00 0.00 30.74 2.57
2728 4605 2.985139 GCAAGCAAAGCAAGTCTGATTC 59.015 45.455 0.00 0.00 28.79 2.52
2729 4606 3.551454 GCAAGCAAAGCAAGTCTGATTCA 60.551 43.478 0.00 0.00 28.79 2.57
2730 4607 4.227538 CAAGCAAAGCAAGTCTGATTCAG 58.772 43.478 7.38 7.38 28.79 3.02
2731 4608 3.484407 AGCAAAGCAAGTCTGATTCAGT 58.516 40.909 13.23 0.00 28.79 3.41
2732 4609 4.645535 AGCAAAGCAAGTCTGATTCAGTA 58.354 39.130 13.23 0.00 28.79 2.74
2733 4610 5.065914 AGCAAAGCAAGTCTGATTCAGTAA 58.934 37.500 13.23 0.00 28.79 2.24
2734 4611 5.709164 AGCAAAGCAAGTCTGATTCAGTAAT 59.291 36.000 13.23 0.00 28.79 1.89
2735 4612 5.798934 GCAAAGCAAGTCTGATTCAGTAATG 59.201 40.000 13.23 10.99 28.79 1.90
2736 4613 6.569226 GCAAAGCAAGTCTGATTCAGTAATGT 60.569 38.462 13.23 1.06 28.79 2.71
2737 4614 6.492007 AAGCAAGTCTGATTCAGTAATGTG 57.508 37.500 13.23 7.22 32.61 3.21
2738 4615 5.555017 AGCAAGTCTGATTCAGTAATGTGT 58.445 37.500 13.23 1.68 32.61 3.72
2739 4616 5.641209 AGCAAGTCTGATTCAGTAATGTGTC 59.359 40.000 13.23 3.91 32.61 3.67
2740 4617 5.163814 GCAAGTCTGATTCAGTAATGTGTCC 60.164 44.000 13.23 0.00 32.61 4.02
2741 4618 4.748892 AGTCTGATTCAGTAATGTGTCCG 58.251 43.478 13.23 0.00 32.61 4.79
2742 4619 4.462834 AGTCTGATTCAGTAATGTGTCCGA 59.537 41.667 13.23 0.00 32.61 4.55
2743 4620 5.127845 AGTCTGATTCAGTAATGTGTCCGAT 59.872 40.000 13.23 0.00 32.61 4.18
2744 4621 5.233050 GTCTGATTCAGTAATGTGTCCGATG 59.767 44.000 13.23 0.00 32.61 3.84
2745 4622 4.441792 TGATTCAGTAATGTGTCCGATGG 58.558 43.478 0.00 0.00 0.00 3.51
2746 4623 4.161377 TGATTCAGTAATGTGTCCGATGGA 59.839 41.667 0.00 0.00 0.00 3.41
2747 4624 3.801114 TCAGTAATGTGTCCGATGGAG 57.199 47.619 0.00 0.00 29.39 3.86
2748 4625 2.430694 TCAGTAATGTGTCCGATGGAGG 59.569 50.000 0.00 0.00 29.39 4.30
2749 4626 1.139058 AGTAATGTGTCCGATGGAGGC 59.861 52.381 0.00 0.00 29.39 4.70
2750 4627 1.139058 GTAATGTGTCCGATGGAGGCT 59.861 52.381 0.00 0.00 29.39 4.58
2751 4628 0.620556 AATGTGTCCGATGGAGGCTT 59.379 50.000 0.00 0.00 29.39 4.35
2752 4629 0.179000 ATGTGTCCGATGGAGGCTTC 59.821 55.000 0.00 0.00 29.39 3.86
2753 4630 1.153349 GTGTCCGATGGAGGCTTCC 60.153 63.158 8.18 8.18 44.31 3.46
2754 4631 1.306141 TGTCCGATGGAGGCTTCCT 60.306 57.895 16.82 1.28 44.36 3.36
2755 4632 0.032515 TGTCCGATGGAGGCTTCCTA 60.033 55.000 16.82 2.93 44.36 2.94
2756 4633 1.120530 GTCCGATGGAGGCTTCCTAA 58.879 55.000 16.82 0.00 44.36 2.69
2757 4634 1.485066 GTCCGATGGAGGCTTCCTAAA 59.515 52.381 16.82 0.00 44.36 1.85
2758 4635 2.104963 GTCCGATGGAGGCTTCCTAAAT 59.895 50.000 16.82 0.69 44.36 1.40
2759 4636 3.323979 GTCCGATGGAGGCTTCCTAAATA 59.676 47.826 16.82 0.00 44.36 1.40
2760 4637 4.020128 GTCCGATGGAGGCTTCCTAAATAT 60.020 45.833 16.82 0.00 44.36 1.28
2761 4638 5.187186 GTCCGATGGAGGCTTCCTAAATATA 59.813 44.000 16.82 0.00 44.36 0.86
2762 4639 5.187186 TCCGATGGAGGCTTCCTAAATATAC 59.813 44.000 16.82 0.00 44.36 1.47
2763 4640 5.187967 CCGATGGAGGCTTCCTAAATATACT 59.812 44.000 16.82 0.00 44.36 2.12
2764 4641 6.295916 CCGATGGAGGCTTCCTAAATATACTT 60.296 42.308 16.82 0.00 44.36 2.24
2765 4642 7.162082 CGATGGAGGCTTCCTAAATATACTTT 58.838 38.462 16.82 0.00 44.36 2.66
2766 4643 7.661847 CGATGGAGGCTTCCTAAATATACTTTT 59.338 37.037 16.82 0.00 44.36 2.27
2767 4644 9.355916 GATGGAGGCTTCCTAAATATACTTTTT 57.644 33.333 16.82 0.00 44.36 1.94
2768 4645 8.519799 TGGAGGCTTCCTAAATATACTTTTTG 57.480 34.615 16.82 0.00 44.36 2.44
2769 4646 8.333235 TGGAGGCTTCCTAAATATACTTTTTGA 58.667 33.333 16.82 0.00 44.36 2.69
2770 4647 9.355916 GGAGGCTTCCTAAATATACTTTTTGAT 57.644 33.333 7.80 0.00 40.58 2.57
2773 4650 9.750125 GGCTTCCTAAATATACTTTTTGATTGG 57.250 33.333 0.00 0.00 0.00 3.16
2778 4655 9.736023 CCTAAATATACTTTTTGATTGGTCAGC 57.264 33.333 0.00 0.00 35.39 4.26
2781 4658 7.944729 ATATACTTTTTGATTGGTCAGCAGT 57.055 32.000 0.00 0.00 35.39 4.40
2782 4659 9.461312 AATATACTTTTTGATTGGTCAGCAGTA 57.539 29.630 0.00 0.00 35.39 2.74
2783 4660 5.695851 ACTTTTTGATTGGTCAGCAGTAG 57.304 39.130 0.00 0.00 35.39 2.57
2784 4661 5.376625 ACTTTTTGATTGGTCAGCAGTAGA 58.623 37.500 0.00 0.00 35.39 2.59
2785 4662 6.006449 ACTTTTTGATTGGTCAGCAGTAGAT 58.994 36.000 0.00 0.00 35.39 1.98
2786 4663 7.168219 ACTTTTTGATTGGTCAGCAGTAGATA 58.832 34.615 0.00 0.00 35.39 1.98
2787 4664 7.831193 ACTTTTTGATTGGTCAGCAGTAGATAT 59.169 33.333 0.00 0.00 35.39 1.63
2788 4665 8.579850 TTTTTGATTGGTCAGCAGTAGATATT 57.420 30.769 0.00 0.00 35.39 1.28
2789 4666 7.558161 TTTGATTGGTCAGCAGTAGATATTG 57.442 36.000 0.00 0.00 35.39 1.90
2790 4667 6.239217 TGATTGGTCAGCAGTAGATATTGT 57.761 37.500 0.00 0.00 0.00 2.71
2791 4668 6.283694 TGATTGGTCAGCAGTAGATATTGTC 58.716 40.000 0.00 0.00 0.00 3.18
2792 4669 5.939764 TTGGTCAGCAGTAGATATTGTCT 57.060 39.130 0.00 0.00 41.11 3.41
2793 4670 7.287696 TGATTGGTCAGCAGTAGATATTGTCTA 59.712 37.037 0.00 0.00 38.42 2.59
2794 4671 6.641169 TGGTCAGCAGTAGATATTGTCTAG 57.359 41.667 0.00 0.00 40.05 2.43
2795 4672 5.010112 TGGTCAGCAGTAGATATTGTCTAGC 59.990 44.000 0.00 0.00 40.05 3.42
2796 4673 5.465935 GTCAGCAGTAGATATTGTCTAGCC 58.534 45.833 0.00 0.00 40.05 3.93
2797 4674 5.010112 GTCAGCAGTAGATATTGTCTAGCCA 59.990 44.000 0.00 0.00 40.05 4.75
2798 4675 5.777223 TCAGCAGTAGATATTGTCTAGCCAT 59.223 40.000 0.00 0.00 40.05 4.40
2799 4676 6.268617 TCAGCAGTAGATATTGTCTAGCCATT 59.731 38.462 0.00 0.00 40.05 3.16
2800 4677 6.368243 CAGCAGTAGATATTGTCTAGCCATTG 59.632 42.308 0.00 0.00 40.05 2.82
2801 4678 6.268617 AGCAGTAGATATTGTCTAGCCATTGA 59.731 38.462 0.00 0.00 40.05 2.57
2802 4679 7.038445 AGCAGTAGATATTGTCTAGCCATTGAT 60.038 37.037 0.00 0.00 40.05 2.57
2803 4680 8.253810 GCAGTAGATATTGTCTAGCCATTGATA 58.746 37.037 0.00 0.00 40.05 2.15
2812 4689 8.985315 TTGTCTAGCCATTGATATTGAATTCT 57.015 30.769 7.05 0.00 0.00 2.40
2813 4690 8.387190 TGTCTAGCCATTGATATTGAATTCTG 57.613 34.615 7.05 0.00 0.00 3.02
2814 4691 7.994911 TGTCTAGCCATTGATATTGAATTCTGT 59.005 33.333 7.05 0.00 0.00 3.41
2815 4692 9.494271 GTCTAGCCATTGATATTGAATTCTGTA 57.506 33.333 7.05 0.15 0.00 2.74
2848 4725 8.949421 ACCTACATTAATTTCATAGGTGGATCT 58.051 33.333 13.17 0.00 43.19 2.75
2849 4726 9.799106 CCTACATTAATTTCATAGGTGGATCTT 57.201 33.333 0.00 0.00 0.00 2.40
2852 4729 9.699410 ACATTAATTTCATAGGTGGATCTTGAA 57.301 29.630 0.00 0.00 0.00 2.69
2854 4731 6.705863 AATTTCATAGGTGGATCTTGAAGC 57.294 37.500 0.00 0.00 0.00 3.86
2855 4732 4.842531 TTCATAGGTGGATCTTGAAGCA 57.157 40.909 0.00 0.00 0.00 3.91
2856 4733 5.378230 TTCATAGGTGGATCTTGAAGCAT 57.622 39.130 0.00 0.00 0.00 3.79
2857 4734 4.711399 TCATAGGTGGATCTTGAAGCATG 58.289 43.478 0.00 0.00 0.00 4.06
2858 4735 4.164796 TCATAGGTGGATCTTGAAGCATGT 59.835 41.667 0.00 0.00 0.00 3.21
2859 4736 2.719739 AGGTGGATCTTGAAGCATGTG 58.280 47.619 0.00 0.00 0.00 3.21
2860 4737 1.133790 GGTGGATCTTGAAGCATGTGC 59.866 52.381 0.00 0.00 42.49 4.57
2861 4738 1.814394 GTGGATCTTGAAGCATGTGCA 59.186 47.619 7.83 0.00 45.16 4.57
2862 4739 1.814394 TGGATCTTGAAGCATGTGCAC 59.186 47.619 10.75 10.75 45.16 4.57
2863 4740 1.133790 GGATCTTGAAGCATGTGCACC 59.866 52.381 15.69 0.00 45.16 5.01
2864 4741 1.814394 GATCTTGAAGCATGTGCACCA 59.186 47.619 15.69 2.61 45.16 4.17
2865 4742 1.913778 TCTTGAAGCATGTGCACCAT 58.086 45.000 15.69 5.14 45.16 3.55
2866 4743 1.814394 TCTTGAAGCATGTGCACCATC 59.186 47.619 15.69 5.98 45.16 3.51
2867 4744 1.542472 CTTGAAGCATGTGCACCATCA 59.458 47.619 15.69 8.56 45.16 3.07
2868 4745 1.618487 TGAAGCATGTGCACCATCAA 58.382 45.000 15.69 0.00 45.16 2.57
2869 4746 1.962100 TGAAGCATGTGCACCATCAAA 59.038 42.857 15.69 0.00 45.16 2.69
2870 4747 2.029739 TGAAGCATGTGCACCATCAAAG 60.030 45.455 15.69 0.00 45.16 2.77
2871 4748 1.913778 AGCATGTGCACCATCAAAGA 58.086 45.000 15.69 0.00 45.16 2.52
2872 4749 2.453521 AGCATGTGCACCATCAAAGAT 58.546 42.857 15.69 0.00 45.16 2.40
2873 4750 2.829720 AGCATGTGCACCATCAAAGATT 59.170 40.909 15.69 0.00 45.16 2.40
2874 4751 3.259876 AGCATGTGCACCATCAAAGATTT 59.740 39.130 15.69 0.00 45.16 2.17
2875 4752 3.998341 GCATGTGCACCATCAAAGATTTT 59.002 39.130 15.69 0.00 41.59 1.82
2876 4753 4.453136 GCATGTGCACCATCAAAGATTTTT 59.547 37.500 15.69 0.00 41.59 1.94
2877 4754 5.390145 GCATGTGCACCATCAAAGATTTTTC 60.390 40.000 15.69 0.00 41.59 2.29
2878 4755 5.273674 TGTGCACCATCAAAGATTTTTCA 57.726 34.783 15.69 0.00 0.00 2.69
2879 4756 5.668471 TGTGCACCATCAAAGATTTTTCAA 58.332 33.333 15.69 0.00 0.00 2.69
2880 4757 6.111382 TGTGCACCATCAAAGATTTTTCAAA 58.889 32.000 15.69 0.00 0.00 2.69
2881 4758 6.766944 TGTGCACCATCAAAGATTTTTCAAAT 59.233 30.769 15.69 0.00 0.00 2.32
2882 4759 7.930325 TGTGCACCATCAAAGATTTTTCAAATA 59.070 29.630 15.69 0.00 0.00 1.40
2883 4760 8.772705 GTGCACCATCAAAGATTTTTCAAATAA 58.227 29.630 5.22 0.00 0.00 1.40
2884 4761 9.504708 TGCACCATCAAAGATTTTTCAAATAAT 57.495 25.926 0.00 0.00 0.00 1.28
2905 4782 8.947055 ATAATACCTGAAAAATGAAATGTGGC 57.053 30.769 0.00 0.00 0.00 5.01
2906 4783 4.961438 ACCTGAAAAATGAAATGTGGCT 57.039 36.364 0.00 0.00 0.00 4.75
2907 4784 4.634199 ACCTGAAAAATGAAATGTGGCTG 58.366 39.130 0.00 0.00 0.00 4.85
2908 4785 4.344679 ACCTGAAAAATGAAATGTGGCTGA 59.655 37.500 0.00 0.00 0.00 4.26
2909 4786 5.163322 ACCTGAAAAATGAAATGTGGCTGAA 60.163 36.000 0.00 0.00 0.00 3.02
2910 4787 5.759273 CCTGAAAAATGAAATGTGGCTGAAA 59.241 36.000 0.00 0.00 0.00 2.69
2911 4788 6.073440 CCTGAAAAATGAAATGTGGCTGAAAG 60.073 38.462 0.00 0.00 0.00 2.62
2912 4789 5.759273 TGAAAAATGAAATGTGGCTGAAAGG 59.241 36.000 0.00 0.00 0.00 3.11
2921 4798 3.952811 GCTGAAAGGCGAGTTCGT 58.047 55.556 3.27 0.00 42.22 3.85
2922 4799 1.493311 GCTGAAAGGCGAGTTCGTG 59.507 57.895 3.27 0.00 42.22 4.35
2923 4800 1.901650 GCTGAAAGGCGAGTTCGTGG 61.902 60.000 3.27 0.00 42.22 4.94
2924 4801 0.600255 CTGAAAGGCGAGTTCGTGGT 60.600 55.000 3.27 0.00 42.22 4.16
2925 4802 0.179067 TGAAAGGCGAGTTCGTGGTT 60.179 50.000 3.27 0.00 42.22 3.67
2926 4803 1.068895 TGAAAGGCGAGTTCGTGGTTA 59.931 47.619 3.27 0.00 42.22 2.85
2927 4804 2.137523 GAAAGGCGAGTTCGTGGTTAA 58.862 47.619 3.27 0.00 42.22 2.01
2928 4805 2.467566 AAGGCGAGTTCGTGGTTAAT 57.532 45.000 3.27 0.00 42.22 1.40
2929 4806 1.722011 AGGCGAGTTCGTGGTTAATG 58.278 50.000 3.27 0.00 42.22 1.90
2930 4807 1.274167 AGGCGAGTTCGTGGTTAATGA 59.726 47.619 3.27 0.00 42.22 2.57
2931 4808 2.070783 GGCGAGTTCGTGGTTAATGAA 58.929 47.619 3.27 0.00 42.22 2.57
2932 4809 2.676342 GGCGAGTTCGTGGTTAATGAAT 59.324 45.455 3.27 0.00 42.22 2.57
2933 4810 3.866910 GGCGAGTTCGTGGTTAATGAATA 59.133 43.478 3.27 0.00 42.22 1.75
2934 4811 4.025979 GGCGAGTTCGTGGTTAATGAATAG 60.026 45.833 3.27 0.00 42.22 1.73
2935 4812 4.565564 GCGAGTTCGTGGTTAATGAATAGT 59.434 41.667 3.27 0.00 42.22 2.12
2936 4813 5.063060 GCGAGTTCGTGGTTAATGAATAGTT 59.937 40.000 3.27 0.00 42.22 2.24
2937 4814 6.254157 GCGAGTTCGTGGTTAATGAATAGTTA 59.746 38.462 3.27 0.00 42.22 2.24
2938 4815 7.607005 CGAGTTCGTGGTTAATGAATAGTTAC 58.393 38.462 0.00 0.00 36.21 2.50
2939 4816 7.253883 CGAGTTCGTGGTTAATGAATAGTTACC 60.254 40.741 0.00 0.00 36.21 2.85
2989 4866 6.985059 GCTAATCAACGTAAGGTCCTAATCTT 59.015 38.462 0.00 0.00 46.39 2.40
3050 4938 2.293677 CAGGTACTTGGCGATATCTCGT 59.706 50.000 0.34 0.00 42.18 4.18
3051 4939 2.293677 AGGTACTTGGCGATATCTCGTG 59.706 50.000 0.34 0.00 41.58 4.35
3052 4940 2.052157 GTACTTGGCGATATCTCGTGC 58.948 52.381 0.34 0.00 46.71 5.34
3053 4941 0.595053 ACTTGGCGATATCTCGTGCG 60.595 55.000 0.34 0.00 46.71 5.34
3054 4942 1.880601 CTTGGCGATATCTCGTGCGC 61.881 60.000 0.00 0.00 46.71 6.09
3057 4945 4.616592 CGATATCTCGTGCGCACT 57.383 55.556 35.27 20.86 40.07 4.40
3058 4946 2.414950 CGATATCTCGTGCGCACTC 58.585 57.895 35.27 23.88 40.07 3.51
3059 4947 1.323827 CGATATCTCGTGCGCACTCG 61.324 60.000 35.27 30.17 40.07 4.18
3073 4961 1.685765 ACTCGATGCAGCCCCTGTA 60.686 57.895 0.00 0.00 33.43 2.74
3094 4982 2.282462 CCCACGGCTGCTCCTTTT 60.282 61.111 0.00 0.00 0.00 2.27
3095 4983 1.002624 CCCACGGCTGCTCCTTTTA 60.003 57.895 0.00 0.00 0.00 1.52
3100 4988 1.359459 CGGCTGCTCCTTTTACGTCC 61.359 60.000 0.00 0.00 0.00 4.79
3109 4997 1.276989 CCTTTTACGTCCCCAGTAGCA 59.723 52.381 0.00 0.00 0.00 3.49
3113 5001 0.974010 TACGTCCCCAGTAGCAAGGG 60.974 60.000 0.00 0.00 45.04 3.95
3122 5010 1.281867 CAGTAGCAAGGGGATGTTGGA 59.718 52.381 0.00 0.00 0.00 3.53
3263 5151 4.151867 GTGGGTTTAGATCGTGTTTCTGTC 59.848 45.833 0.00 0.00 0.00 3.51
3334 5225 1.202325 GGGACCAAAACCAAACGTGTC 60.202 52.381 0.00 0.00 0.00 3.67
3351 5242 1.069358 TGTCGATGTGTGGTGTGCTTA 59.931 47.619 0.00 0.00 0.00 3.09
3359 5250 2.094258 GTGTGGTGTGCTTACGATCATG 59.906 50.000 0.00 0.00 0.00 3.07
3398 5289 1.789576 GCTCCCCCTTTTCCCTCACA 61.790 60.000 0.00 0.00 0.00 3.58
3410 5301 5.930837 TTTCCCTCACAGTTTGTTTCAAT 57.069 34.783 0.00 0.00 0.00 2.57
3449 5343 2.544844 TCTCCCCCTTGATCGTAAGT 57.455 50.000 0.00 0.00 39.48 2.24
3574 5468 8.285394 CACCATTCTATCTTGAAATGGATAACG 58.715 37.037 17.68 0.00 33.26 3.18
3651 5545 2.034066 CCAGCAACCCCATGTCGT 59.966 61.111 0.00 0.00 0.00 4.34
3691 5585 1.401905 GGTGGCAAGCCTTCGATAAAG 59.598 52.381 12.96 0.00 36.94 1.85
3710 5604 8.122952 CGATAAAGGGATCTGTAAAACATTCAC 58.877 37.037 0.00 0.00 0.00 3.18
3724 5618 6.662414 AAACATTCACATGTACTCATACGG 57.338 37.500 0.00 0.00 43.34 4.02
3725 5619 5.339008 ACATTCACATGTACTCATACGGT 57.661 39.130 0.00 0.00 42.24 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.210120 CGAGATTTAAGGCACATGCTAGAC 59.790 45.833 3.48 0.00 41.70 2.59
46 47 6.425721 TGTTAGTGCAAGTGTCCATTAAGTAC 59.574 38.462 0.00 0.00 0.00 2.73
57 58 5.871524 CAGATATCACTGTTAGTGCAAGTGT 59.128 40.000 13.67 5.85 45.54 3.55
61 62 6.591448 CAGTTCAGATATCACTGTTAGTGCAA 59.409 38.462 5.32 0.00 45.54 4.08
66 67 8.633561 TCATACCAGTTCAGATATCACTGTTAG 58.366 37.037 16.36 7.49 36.90 2.34
67 68 8.533569 TCATACCAGTTCAGATATCACTGTTA 57.466 34.615 16.36 9.86 36.90 2.41
77 78 8.262601 TGGTGTTATATCATACCAGTTCAGAT 57.737 34.615 1.63 0.00 38.23 2.90
78 79 7.669089 TGGTGTTATATCATACCAGTTCAGA 57.331 36.000 1.63 0.00 38.23 3.27
85 86 7.373617 ACATCACTGGTGTTATATCATACCA 57.626 36.000 5.51 5.51 40.67 3.25
86 87 9.944376 AATACATCACTGGTGTTATATCATACC 57.056 33.333 0.00 0.00 0.00 2.73
88 89 9.942850 CCAATACATCACTGGTGTTATATCATA 57.057 33.333 0.00 0.00 0.00 2.15
89 90 8.439971 ACCAATACATCACTGGTGTTATATCAT 58.560 33.333 0.00 0.00 41.95 2.45
90 91 7.801104 ACCAATACATCACTGGTGTTATATCA 58.199 34.615 0.00 0.00 41.95 2.15
91 92 8.677148 AACCAATACATCACTGGTGTTATATC 57.323 34.615 0.00 0.00 42.72 1.63
92 93 9.120538 GAAACCAATACATCACTGGTGTTATAT 57.879 33.333 0.00 0.00 42.72 0.86
93 94 8.325787 AGAAACCAATACATCACTGGTGTTATA 58.674 33.333 0.00 0.00 42.72 0.98
94 95 7.175104 AGAAACCAATACATCACTGGTGTTAT 58.825 34.615 0.00 0.00 42.72 1.89
95 96 6.539173 AGAAACCAATACATCACTGGTGTTA 58.461 36.000 0.00 0.00 42.72 2.41
96 97 5.385198 AGAAACCAATACATCACTGGTGTT 58.615 37.500 0.00 0.00 42.72 3.32
97 98 4.985538 AGAAACCAATACATCACTGGTGT 58.014 39.130 0.00 0.00 42.72 4.16
98 99 6.173339 AGTAGAAACCAATACATCACTGGTG 58.827 40.000 0.00 0.00 42.72 4.17
99 100 6.374417 AGTAGAAACCAATACATCACTGGT 57.626 37.500 0.00 0.00 45.50 4.00
100 101 8.830580 CATTAGTAGAAACCAATACATCACTGG 58.169 37.037 0.00 0.00 36.24 4.00
101 102 8.830580 CCATTAGTAGAAACCAATACATCACTG 58.169 37.037 0.00 0.00 0.00 3.66
102 103 8.768397 TCCATTAGTAGAAACCAATACATCACT 58.232 33.333 0.00 0.00 0.00 3.41
103 104 8.958119 TCCATTAGTAGAAACCAATACATCAC 57.042 34.615 0.00 0.00 0.00 3.06
104 105 9.967451 TTTCCATTAGTAGAAACCAATACATCA 57.033 29.630 0.00 0.00 0.00 3.07
175 182 7.913789 TGGTAAGTATTTGTTCAGGTATCACT 58.086 34.615 0.00 0.00 0.00 3.41
210 217 3.587797 ATTGGTAGGTACACACGTCAG 57.412 47.619 0.00 0.00 0.00 3.51
213 220 2.633967 TCCAATTGGTAGGTACACACGT 59.366 45.455 23.76 0.00 36.34 4.49
215 222 4.281898 ACTCCAATTGGTAGGTACACAC 57.718 45.455 23.76 0.00 36.34 3.82
219 226 8.474710 TCTTCTATACTCCAATTGGTAGGTAC 57.525 38.462 23.76 0.00 36.34 3.34
226 233 7.436673 CGTCTCTTTCTTCTATACTCCAATTGG 59.563 40.741 19.08 19.08 0.00 3.16
233 240 9.872757 CAGATAACGTCTCTTTCTTCTATACTC 57.127 37.037 0.00 0.00 34.00 2.59
234 241 8.347035 GCAGATAACGTCTCTTTCTTCTATACT 58.653 37.037 0.00 0.00 34.00 2.12
249 256 1.060698 GTTTCTGCCGCAGATAACGTC 59.939 52.381 23.48 3.93 40.39 4.34
251 258 1.075542 TGTTTCTGCCGCAGATAACG 58.924 50.000 23.48 0.00 40.39 3.18
252 259 3.058224 AGTTTGTTTCTGCCGCAGATAAC 60.058 43.478 23.48 24.83 40.39 1.89
262 269 6.739112 ACCTCTGATAAAAGTTTGTTTCTGC 58.261 36.000 0.00 0.00 0.00 4.26
263 270 8.624776 AGAACCTCTGATAAAAGTTTGTTTCTG 58.375 33.333 0.00 0.00 0.00 3.02
267 274 9.403583 TGTAAGAACCTCTGATAAAAGTTTGTT 57.596 29.630 0.00 0.00 0.00 2.83
268 275 8.974060 TGTAAGAACCTCTGATAAAAGTTTGT 57.026 30.769 0.00 0.00 0.00 2.83
274 281 8.617809 GTGTGTTTGTAAGAACCTCTGATAAAA 58.382 33.333 0.00 0.00 0.00 1.52
281 288 4.839121 TGTGTGTGTTTGTAAGAACCTCT 58.161 39.130 0.00 0.00 0.00 3.69
285 292 7.241663 TCTGTATGTGTGTGTTTGTAAGAAC 57.758 36.000 0.00 0.00 0.00 3.01
312 319 8.927411 CCCCAAGGATCTGAATGTAATTTTATT 58.073 33.333 0.00 0.00 32.39 1.40
326 333 1.383799 TTGGCACCCCAAGGATCTG 59.616 57.895 0.00 0.00 46.01 2.90
334 342 0.032615 AACAAGACTTTGGCACCCCA 60.033 50.000 0.00 0.00 38.66 4.96
338 346 1.338020 CCAGGAACAAGACTTTGGCAC 59.662 52.381 0.00 0.00 38.66 5.01
341 349 1.338020 GCACCAGGAACAAGACTTTGG 59.662 52.381 0.00 1.95 38.66 3.28
343 351 2.301346 CTGCACCAGGAACAAGACTTT 58.699 47.619 0.00 0.00 0.00 2.66
381 389 1.222115 GCGGGATCGTGTTATGCTCC 61.222 60.000 0.00 0.00 38.89 4.70
390 398 3.043419 CCTAGAGGCGGGATCGTG 58.957 66.667 0.00 0.00 38.89 4.35
432 440 4.527509 TCTCAACCACTGCTTCTAGAAG 57.472 45.455 25.42 25.42 41.24 2.85
434 442 3.306364 GCTTCTCAACCACTGCTTCTAGA 60.306 47.826 0.00 0.00 0.00 2.43
435 443 2.999355 GCTTCTCAACCACTGCTTCTAG 59.001 50.000 0.00 0.00 0.00 2.43
436 444 2.289694 GGCTTCTCAACCACTGCTTCTA 60.290 50.000 0.00 0.00 0.00 2.10
437 445 1.544314 GGCTTCTCAACCACTGCTTCT 60.544 52.381 0.00 0.00 0.00 2.85
438 446 0.877743 GGCTTCTCAACCACTGCTTC 59.122 55.000 0.00 0.00 0.00 3.86
439 447 0.886490 CGGCTTCTCAACCACTGCTT 60.886 55.000 0.00 0.00 0.00 3.91
446 454 0.389948 ACATCGACGGCTTCTCAACC 60.390 55.000 0.00 0.00 0.00 3.77
448 456 2.089201 TCTACATCGACGGCTTCTCAA 58.911 47.619 0.00 0.00 0.00 3.02
456 464 0.663688 CTCCTGGTCTACATCGACGG 59.336 60.000 0.00 0.00 34.75 4.79
469 477 6.592994 CAGTACATAATACATGCATCTCCTGG 59.407 42.308 0.00 0.00 0.00 4.45
471 479 7.308450 ACAGTACATAATACATGCATCTCCT 57.692 36.000 0.00 0.00 0.00 3.69
474 482 9.481340 CAAGTACAGTACATAATACATGCATCT 57.519 33.333 13.37 0.00 0.00 2.90
477 485 7.434013 CGACAAGTACAGTACATAATACATGCA 59.566 37.037 13.37 0.00 0.00 3.96
480 488 9.678941 CATCGACAAGTACAGTACATAATACAT 57.321 33.333 13.37 0.00 0.00 2.29
482 490 9.167239 GTCATCGACAAGTACAGTACATAATAC 57.833 37.037 13.37 0.00 32.09 1.89
484 492 7.915923 CAGTCATCGACAAGTACAGTACATAAT 59.084 37.037 13.37 0.00 34.60 1.28
495 536 1.067142 GGCCACAGTCATCGACAAGTA 60.067 52.381 0.00 0.00 34.60 2.24
502 543 1.079819 AACGAGGCCACAGTCATCG 60.080 57.895 5.01 6.07 39.22 3.84
510 551 0.517316 GACAATGTCAACGAGGCCAC 59.483 55.000 8.74 0.00 32.09 5.01
558 599 7.847096 TGTAATACGGGTCTATGCATCAATAT 58.153 34.615 0.19 0.00 0.00 1.28
566 607 4.304939 GAGGTTGTAATACGGGTCTATGC 58.695 47.826 0.00 0.00 0.00 3.14
567 608 4.587684 AGGAGGTTGTAATACGGGTCTATG 59.412 45.833 0.00 0.00 0.00 2.23
575 650 4.868734 GGTTCTCAAGGAGGTTGTAATACG 59.131 45.833 0.00 0.00 37.43 3.06
577 652 6.183361 TGTTGGTTCTCAAGGAGGTTGTAATA 60.183 38.462 0.00 0.00 37.43 0.98
579 654 4.080243 TGTTGGTTCTCAAGGAGGTTGTAA 60.080 41.667 0.00 0.00 37.43 2.41
592 667 7.414814 TTTCTTTTTGTTGTTGTTGGTTCTC 57.585 32.000 0.00 0.00 0.00 2.87
593 668 7.281100 TGTTTTCTTTTTGTTGTTGTTGGTTCT 59.719 29.630 0.00 0.00 0.00 3.01
594 669 7.410485 TGTTTTCTTTTTGTTGTTGTTGGTTC 58.590 30.769 0.00 0.00 0.00 3.62
595 670 7.321745 TGTTTTCTTTTTGTTGTTGTTGGTT 57.678 28.000 0.00 0.00 0.00 3.67
596 671 6.927294 TGTTTTCTTTTTGTTGTTGTTGGT 57.073 29.167 0.00 0.00 0.00 3.67
597 672 9.323963 GTTATGTTTTCTTTTTGTTGTTGTTGG 57.676 29.630 0.00 0.00 0.00 3.77
692 767 2.308347 TGCAACACGTTATGCTTTCG 57.692 45.000 19.64 0.00 42.97 3.46
737 812 9.848172 GATTGTTTTATGCACAAAGTGTAAAAG 57.152 29.630 0.00 0.00 37.67 2.27
742 817 4.444056 GCGATTGTTTTATGCACAAAGTGT 59.556 37.500 0.00 0.00 37.67 3.55
758 833 4.334759 CAGAATCTCTCATTTGGCGATTGT 59.665 41.667 0.00 0.00 0.00 2.71
766 841 5.159209 GGCAAACACAGAATCTCTCATTTG 58.841 41.667 0.00 0.00 0.00 2.32
767 842 4.219288 GGGCAAACACAGAATCTCTCATTT 59.781 41.667 0.00 0.00 0.00 2.32
768 843 3.760684 GGGCAAACACAGAATCTCTCATT 59.239 43.478 0.00 0.00 0.00 2.57
769 844 3.245016 TGGGCAAACACAGAATCTCTCAT 60.245 43.478 0.00 0.00 0.00 2.90
771 846 2.485814 GTGGGCAAACACAGAATCTCTC 59.514 50.000 1.18 0.00 40.99 3.20
772 847 2.508526 GTGGGCAAACACAGAATCTCT 58.491 47.619 1.18 0.00 40.99 3.10
773 848 1.197721 CGTGGGCAAACACAGAATCTC 59.802 52.381 6.30 0.00 41.38 2.75
774 849 1.238439 CGTGGGCAAACACAGAATCT 58.762 50.000 6.30 0.00 41.38 2.40
821 896 6.258160 ACTATTTGCATCAGTTTAATCACGC 58.742 36.000 0.00 0.00 0.00 5.34
822 897 6.907212 GGACTATTTGCATCAGTTTAATCACG 59.093 38.462 0.00 0.00 0.00 4.35
823 898 7.698130 GTGGACTATTTGCATCAGTTTAATCAC 59.302 37.037 0.00 0.00 0.00 3.06
825 900 7.761409 TGTGGACTATTTGCATCAGTTTAATC 58.239 34.615 0.00 0.00 0.00 1.75
921 999 1.271871 TGCCAAGTTTGATCCGTGGAT 60.272 47.619 0.00 0.00 37.59 3.41
978 1056 4.543590 TTGAGTTTCTTAGCTGGAGGAG 57.456 45.455 0.00 0.00 0.00 3.69
1014 1092 4.347865 GAGAGGAGCTCCGAGGTT 57.652 61.111 26.95 9.36 42.08 3.50
1051 1129 0.955752 ATGAGGGGGAGAAGGAGGAT 59.044 55.000 0.00 0.00 0.00 3.24
1059 1137 1.230497 GACGAGGATGAGGGGGAGA 59.770 63.158 0.00 0.00 0.00 3.71
1069 1147 2.303175 GAGTGCTAGGAAGACGAGGAT 58.697 52.381 0.00 0.00 0.00 3.24
1075 1153 2.750712 AGAAGACGAGTGCTAGGAAGAC 59.249 50.000 0.00 0.00 0.00 3.01
1078 1156 3.057456 GTCAAGAAGACGAGTGCTAGGAA 60.057 47.826 0.00 0.00 37.53 3.36
1101 1179 0.033011 TGTAGCCTGGTCTCCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
1102 1180 0.413832 TTGTAGCCTGGTCTCCTCCT 59.586 55.000 0.00 0.00 0.00 3.69
1103 1181 1.208293 CTTTGTAGCCTGGTCTCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
1112 1190 0.393537 CCTGAGCCCTTTGTAGCCTG 60.394 60.000 0.00 0.00 0.00 4.85
1113 1191 1.994463 CCTGAGCCCTTTGTAGCCT 59.006 57.895 0.00 0.00 0.00 4.58
1314 1392 1.838112 GGGTGCAACAATCCTCATCA 58.162 50.000 3.06 0.00 39.98 3.07
1515 1594 2.546778 TCGAGCGGTTACATTCATTCC 58.453 47.619 0.00 0.00 0.00 3.01
1529 1861 1.586564 GGTGTTCCTCGATCGAGCG 60.587 63.158 34.54 27.00 40.69 5.03
1559 3404 4.948847 TCCACCTGATCACGAATAGAATG 58.051 43.478 0.00 0.00 0.00 2.67
1593 3450 2.032528 CCAAGCCGCTCAAGGTGA 59.967 61.111 0.00 0.00 0.00 4.02
1712 3569 2.805295 CGTGCTCCAAGTTCTTGTGGTA 60.805 50.000 10.93 1.68 36.23 3.25
1866 3725 5.163478 TGCTCAATGATGATCTCGAAGAAGA 60.163 40.000 0.00 0.00 34.37 2.87
1967 3826 1.302431 TGATGTTGAGGGTGCCACG 60.302 57.895 0.00 0.00 0.00 4.94
1987 3846 0.541063 TGCCCTTGACGTGGTCTCTA 60.541 55.000 0.00 0.00 33.15 2.43
2100 3973 2.677524 TGAAGGTGCCCTGCATGC 60.678 61.111 11.82 11.82 41.91 4.06
2113 3990 2.009774 GTGTCCGATCCACCAATGAAG 58.990 52.381 0.00 0.00 0.00 3.02
2139 4016 1.744320 CGCCCATAGGATCGTCACCA 61.744 60.000 0.00 0.00 33.47 4.17
2167 4044 0.321653 GCGGTGGTTTCCAGATCAGT 60.322 55.000 0.00 0.00 32.34 3.41
2179 4056 1.141053 ACTTTCTTCAGAAGCGGTGGT 59.859 47.619 5.15 0.00 35.21 4.16
2185 4062 3.605692 CGTCTTGCACTTTCTTCAGAAGC 60.606 47.826 5.15 0.00 35.21 3.86
2341 4218 1.072173 CCAATCTGGATGTCCCGCATA 59.928 52.381 0.00 0.00 40.96 3.14
2385 4262 0.459899 AGCGTTCACATAGATCCGCA 59.540 50.000 10.53 0.00 44.57 5.69
2581 4458 2.104281 GTGGTATAGTAGGTTGGCCAGG 59.896 54.545 5.11 0.00 37.19 4.45
2629 4506 0.617413 CCTCCTCCATGCTCACTGTT 59.383 55.000 0.00 0.00 0.00 3.16
2698 4575 2.789213 TGCTTTGCTTGCTGGTATGTA 58.211 42.857 0.00 0.00 0.00 2.29
2699 4576 1.619654 TGCTTTGCTTGCTGGTATGT 58.380 45.000 0.00 0.00 0.00 2.29
2710 4587 3.484407 ACTGAATCAGACTTGCTTTGCT 58.516 40.909 18.20 0.00 35.18 3.91
2711 4588 3.911661 ACTGAATCAGACTTGCTTTGC 57.088 42.857 18.20 0.00 35.18 3.68
2712 4589 6.800408 CACATTACTGAATCAGACTTGCTTTG 59.200 38.462 18.20 5.45 35.18 2.77
2713 4590 6.488006 ACACATTACTGAATCAGACTTGCTTT 59.512 34.615 18.20 0.00 35.18 3.51
2714 4591 6.000219 ACACATTACTGAATCAGACTTGCTT 59.000 36.000 18.20 0.00 35.18 3.91
2716 4593 5.163814 GGACACATTACTGAATCAGACTTGC 60.164 44.000 18.20 3.58 35.18 4.01
2717 4594 5.062683 CGGACACATTACTGAATCAGACTTG 59.937 44.000 18.20 12.33 35.18 3.16
2718 4595 5.047306 TCGGACACATTACTGAATCAGACTT 60.047 40.000 18.20 0.00 35.18 3.01
2720 4597 4.744570 TCGGACACATTACTGAATCAGAC 58.255 43.478 18.20 0.00 35.18 3.51
2721 4598 5.351458 CATCGGACACATTACTGAATCAGA 58.649 41.667 18.20 0.00 35.18 3.27
2722 4599 4.509230 CCATCGGACACATTACTGAATCAG 59.491 45.833 8.98 8.98 37.52 2.90
2723 4600 4.161377 TCCATCGGACACATTACTGAATCA 59.839 41.667 0.00 0.00 0.00 2.57
2724 4601 4.693283 TCCATCGGACACATTACTGAATC 58.307 43.478 0.00 0.00 0.00 2.52
2725 4602 4.443457 CCTCCATCGGACACATTACTGAAT 60.443 45.833 0.00 0.00 0.00 2.57
2726 4603 3.118775 CCTCCATCGGACACATTACTGAA 60.119 47.826 0.00 0.00 0.00 3.02
2727 4604 2.430694 CCTCCATCGGACACATTACTGA 59.569 50.000 0.00 0.00 0.00 3.41
2728 4605 2.826428 CCTCCATCGGACACATTACTG 58.174 52.381 0.00 0.00 0.00 2.74
2729 4606 1.139058 GCCTCCATCGGACACATTACT 59.861 52.381 0.00 0.00 0.00 2.24
2730 4607 1.139058 AGCCTCCATCGGACACATTAC 59.861 52.381 0.00 0.00 0.00 1.89
2731 4608 1.496060 AGCCTCCATCGGACACATTA 58.504 50.000 0.00 0.00 0.00 1.90
2732 4609 0.620556 AAGCCTCCATCGGACACATT 59.379 50.000 0.00 0.00 0.00 2.71
2733 4610 0.179000 GAAGCCTCCATCGGACACAT 59.821 55.000 0.00 0.00 0.00 3.21
2734 4611 1.596934 GAAGCCTCCATCGGACACA 59.403 57.895 0.00 0.00 0.00 3.72
2735 4612 1.153349 GGAAGCCTCCATCGGACAC 60.153 63.158 0.00 0.00 41.96 3.67
2736 4613 0.032515 TAGGAAGCCTCCATCGGACA 60.033 55.000 3.68 0.00 45.24 4.02
2737 4614 1.120530 TTAGGAAGCCTCCATCGGAC 58.879 55.000 3.68 0.00 45.24 4.79
2738 4615 1.874129 TTTAGGAAGCCTCCATCGGA 58.126 50.000 3.68 0.00 45.24 4.55
2739 4616 2.938956 ATTTAGGAAGCCTCCATCGG 57.061 50.000 3.68 0.00 45.24 4.18
2740 4617 6.287589 AGTATATTTAGGAAGCCTCCATCG 57.712 41.667 3.68 0.00 45.24 3.84
2741 4618 8.926092 AAAAGTATATTTAGGAAGCCTCCATC 57.074 34.615 3.68 0.00 45.24 3.51
2742 4619 9.136323 CAAAAAGTATATTTAGGAAGCCTCCAT 57.864 33.333 3.68 0.00 45.24 3.41
2743 4620 8.333235 TCAAAAAGTATATTTAGGAAGCCTCCA 58.667 33.333 3.68 0.00 45.24 3.86
2744 4621 8.747538 TCAAAAAGTATATTTAGGAAGCCTCC 57.252 34.615 0.00 0.00 42.81 4.30
2747 4624 9.750125 CCAATCAAAAAGTATATTTAGGAAGCC 57.250 33.333 0.00 0.00 0.00 4.35
2752 4629 9.736023 GCTGACCAATCAAAAAGTATATTTAGG 57.264 33.333 0.00 0.00 33.30 2.69
2755 4632 8.806146 ACTGCTGACCAATCAAAAAGTATATTT 58.194 29.630 0.00 0.00 33.30 1.40
2756 4633 8.353423 ACTGCTGACCAATCAAAAAGTATATT 57.647 30.769 0.00 0.00 33.30 1.28
2757 4634 7.944729 ACTGCTGACCAATCAAAAAGTATAT 57.055 32.000 0.00 0.00 33.30 0.86
2758 4635 8.318412 TCTACTGCTGACCAATCAAAAAGTATA 58.682 33.333 0.00 0.00 33.30 1.47
2759 4636 7.168219 TCTACTGCTGACCAATCAAAAAGTAT 58.832 34.615 0.00 0.00 33.30 2.12
2760 4637 6.530120 TCTACTGCTGACCAATCAAAAAGTA 58.470 36.000 0.00 0.00 33.30 2.24
2761 4638 5.376625 TCTACTGCTGACCAATCAAAAAGT 58.623 37.500 0.00 0.00 33.30 2.66
2762 4639 5.947228 TCTACTGCTGACCAATCAAAAAG 57.053 39.130 0.00 0.00 33.30 2.27
2763 4640 8.461222 CAATATCTACTGCTGACCAATCAAAAA 58.539 33.333 0.00 0.00 33.30 1.94
2764 4641 7.611467 ACAATATCTACTGCTGACCAATCAAAA 59.389 33.333 0.00 0.00 33.30 2.44
2765 4642 7.112122 ACAATATCTACTGCTGACCAATCAAA 58.888 34.615 0.00 0.00 33.30 2.69
2766 4643 6.653020 ACAATATCTACTGCTGACCAATCAA 58.347 36.000 0.00 0.00 33.30 2.57
2767 4644 6.098838 AGACAATATCTACTGCTGACCAATCA 59.901 38.462 0.00 0.00 35.15 2.57
2768 4645 6.520272 AGACAATATCTACTGCTGACCAATC 58.480 40.000 0.00 0.00 35.15 2.67
2769 4646 6.491714 AGACAATATCTACTGCTGACCAAT 57.508 37.500 0.00 0.00 35.15 3.16
2770 4647 5.939764 AGACAATATCTACTGCTGACCAA 57.060 39.130 0.00 0.00 35.15 3.67
2771 4648 5.010112 GCTAGACAATATCTACTGCTGACCA 59.990 44.000 0.00 0.00 39.04 4.02
2772 4649 5.465935 GCTAGACAATATCTACTGCTGACC 58.534 45.833 0.00 0.00 39.04 4.02
2773 4650 5.010112 TGGCTAGACAATATCTACTGCTGAC 59.990 44.000 0.00 0.00 39.04 3.51
2774 4651 5.140454 TGGCTAGACAATATCTACTGCTGA 58.860 41.667 0.00 0.00 39.04 4.26
2775 4652 5.459536 TGGCTAGACAATATCTACTGCTG 57.540 43.478 0.00 0.00 39.04 4.41
2776 4653 6.268617 TCAATGGCTAGACAATATCTACTGCT 59.731 38.462 0.13 0.00 39.04 4.24
2777 4654 6.459066 TCAATGGCTAGACAATATCTACTGC 58.541 40.000 0.13 0.00 39.04 4.40
2786 4663 9.584008 AGAATTCAATATCAATGGCTAGACAAT 57.416 29.630 0.13 0.00 0.00 2.71
2787 4664 8.843262 CAGAATTCAATATCAATGGCTAGACAA 58.157 33.333 0.13 0.00 0.00 3.18
2788 4665 7.994911 ACAGAATTCAATATCAATGGCTAGACA 59.005 33.333 0.00 0.00 0.00 3.41
2789 4666 8.388484 ACAGAATTCAATATCAATGGCTAGAC 57.612 34.615 8.44 0.00 0.00 2.59
2822 4699 8.949421 AGATCCACCTATGAAATTAATGTAGGT 58.051 33.333 12.69 12.69 44.40 3.08
2823 4700 9.799106 AAGATCCACCTATGAAATTAATGTAGG 57.201 33.333 11.81 11.81 38.28 3.18
2826 4703 9.699410 TTCAAGATCCACCTATGAAATTAATGT 57.301 29.630 0.00 0.00 0.00 2.71
2828 4705 8.854117 GCTTCAAGATCCACCTATGAAATTAAT 58.146 33.333 0.00 0.00 30.37 1.40
2829 4706 7.833682 TGCTTCAAGATCCACCTATGAAATTAA 59.166 33.333 0.00 0.00 30.37 1.40
2830 4707 7.345691 TGCTTCAAGATCCACCTATGAAATTA 58.654 34.615 0.00 0.00 30.37 1.40
2831 4708 6.189859 TGCTTCAAGATCCACCTATGAAATT 58.810 36.000 0.00 0.00 30.37 1.82
2832 4709 5.759059 TGCTTCAAGATCCACCTATGAAAT 58.241 37.500 0.00 0.00 30.37 2.17
2833 4710 5.178096 TGCTTCAAGATCCACCTATGAAA 57.822 39.130 0.00 0.00 30.37 2.69
2834 4711 4.842531 TGCTTCAAGATCCACCTATGAA 57.157 40.909 0.00 0.00 0.00 2.57
2835 4712 4.164796 ACATGCTTCAAGATCCACCTATGA 59.835 41.667 0.00 0.00 0.00 2.15
2836 4713 4.275196 CACATGCTTCAAGATCCACCTATG 59.725 45.833 0.00 0.00 0.00 2.23
2837 4714 4.458397 CACATGCTTCAAGATCCACCTAT 58.542 43.478 0.00 0.00 0.00 2.57
2838 4715 3.877559 CACATGCTTCAAGATCCACCTA 58.122 45.455 0.00 0.00 0.00 3.08
2839 4716 2.719739 CACATGCTTCAAGATCCACCT 58.280 47.619 0.00 0.00 0.00 4.00
2840 4717 1.133790 GCACATGCTTCAAGATCCACC 59.866 52.381 0.00 0.00 38.21 4.61
2841 4718 1.814394 TGCACATGCTTCAAGATCCAC 59.186 47.619 5.31 0.00 42.66 4.02
2842 4719 1.814394 GTGCACATGCTTCAAGATCCA 59.186 47.619 13.17 0.00 42.66 3.41
2843 4720 1.133790 GGTGCACATGCTTCAAGATCC 59.866 52.381 20.43 0.00 42.66 3.36
2844 4721 1.814394 TGGTGCACATGCTTCAAGATC 59.186 47.619 20.43 0.00 42.66 2.75
2845 4722 1.913778 TGGTGCACATGCTTCAAGAT 58.086 45.000 20.43 0.00 42.66 2.40
2846 4723 1.814394 GATGGTGCACATGCTTCAAGA 59.186 47.619 20.43 0.00 40.72 3.02
2847 4724 1.542472 TGATGGTGCACATGCTTCAAG 59.458 47.619 20.43 0.00 40.72 3.02
2848 4725 1.618487 TGATGGTGCACATGCTTCAA 58.382 45.000 20.43 0.00 40.72 2.69
2849 4726 1.618487 TTGATGGTGCACATGCTTCA 58.382 45.000 20.43 11.98 40.72 3.02
2850 4727 2.229543 TCTTTGATGGTGCACATGCTTC 59.770 45.455 20.43 9.53 40.72 3.86
2851 4728 2.241160 TCTTTGATGGTGCACATGCTT 58.759 42.857 20.43 0.00 40.72 3.91
2852 4729 1.913778 TCTTTGATGGTGCACATGCT 58.086 45.000 20.43 0.00 40.72 3.79
2853 4730 2.953466 ATCTTTGATGGTGCACATGC 57.047 45.000 20.43 7.15 40.72 4.06
2854 4731 5.697178 TGAAAAATCTTTGATGGTGCACATG 59.303 36.000 20.43 0.00 40.72 3.21
2855 4732 5.856156 TGAAAAATCTTTGATGGTGCACAT 58.144 33.333 20.43 10.28 44.18 3.21
2856 4733 5.273674 TGAAAAATCTTTGATGGTGCACA 57.726 34.783 20.43 5.24 0.00 4.57
2857 4734 6.601741 TTTGAAAAATCTTTGATGGTGCAC 57.398 33.333 8.80 8.80 0.00 4.57
2858 4735 8.899427 TTATTTGAAAAATCTTTGATGGTGCA 57.101 26.923 0.00 0.00 0.00 4.57
2879 4756 9.382275 GCCACATTTCATTTTTCAGGTATTATT 57.618 29.630 0.00 0.00 0.00 1.40
2880 4757 8.761689 AGCCACATTTCATTTTTCAGGTATTAT 58.238 29.630 0.00 0.00 0.00 1.28
2881 4758 8.034215 CAGCCACATTTCATTTTTCAGGTATTA 58.966 33.333 0.00 0.00 0.00 0.98
2882 4759 6.875195 CAGCCACATTTCATTTTTCAGGTATT 59.125 34.615 0.00 0.00 0.00 1.89
2883 4760 6.211184 TCAGCCACATTTCATTTTTCAGGTAT 59.789 34.615 0.00 0.00 0.00 2.73
2884 4761 5.538053 TCAGCCACATTTCATTTTTCAGGTA 59.462 36.000 0.00 0.00 0.00 3.08
2885 4762 4.344679 TCAGCCACATTTCATTTTTCAGGT 59.655 37.500 0.00 0.00 0.00 4.00
2886 4763 4.885413 TCAGCCACATTTCATTTTTCAGG 58.115 39.130 0.00 0.00 0.00 3.86
2887 4764 6.073440 CCTTTCAGCCACATTTCATTTTTCAG 60.073 38.462 0.00 0.00 0.00 3.02
2888 4765 5.759273 CCTTTCAGCCACATTTCATTTTTCA 59.241 36.000 0.00 0.00 0.00 2.69
2889 4766 5.334337 GCCTTTCAGCCACATTTCATTTTTC 60.334 40.000 0.00 0.00 0.00 2.29
2890 4767 4.516321 GCCTTTCAGCCACATTTCATTTTT 59.484 37.500 0.00 0.00 0.00 1.94
2891 4768 4.067192 GCCTTTCAGCCACATTTCATTTT 58.933 39.130 0.00 0.00 0.00 1.82
2892 4769 3.667360 GCCTTTCAGCCACATTTCATTT 58.333 40.909 0.00 0.00 0.00 2.32
2893 4770 2.353011 CGCCTTTCAGCCACATTTCATT 60.353 45.455 0.00 0.00 0.00 2.57
2894 4771 1.203052 CGCCTTTCAGCCACATTTCAT 59.797 47.619 0.00 0.00 0.00 2.57
2895 4772 0.597568 CGCCTTTCAGCCACATTTCA 59.402 50.000 0.00 0.00 0.00 2.69
2896 4773 0.881118 TCGCCTTTCAGCCACATTTC 59.119 50.000 0.00 0.00 0.00 2.17
2897 4774 0.883833 CTCGCCTTTCAGCCACATTT 59.116 50.000 0.00 0.00 0.00 2.32
2898 4775 0.250901 ACTCGCCTTTCAGCCACATT 60.251 50.000 0.00 0.00 0.00 2.71
2899 4776 0.250901 AACTCGCCTTTCAGCCACAT 60.251 50.000 0.00 0.00 0.00 3.21
2900 4777 0.884704 GAACTCGCCTTTCAGCCACA 60.885 55.000 0.00 0.00 0.00 4.17
2901 4778 1.869690 GAACTCGCCTTTCAGCCAC 59.130 57.895 0.00 0.00 0.00 5.01
2902 4779 1.667830 CGAACTCGCCTTTCAGCCA 60.668 57.895 0.00 0.00 0.00 4.75
2903 4780 1.668151 ACGAACTCGCCTTTCAGCC 60.668 57.895 0.00 0.00 44.43 4.85
2904 4781 1.493311 CACGAACTCGCCTTTCAGC 59.507 57.895 0.00 0.00 44.43 4.26
2905 4782 0.600255 ACCACGAACTCGCCTTTCAG 60.600 55.000 0.00 0.00 44.43 3.02
2906 4783 0.179067 AACCACGAACTCGCCTTTCA 60.179 50.000 0.00 0.00 44.43 2.69
2907 4784 1.787012 TAACCACGAACTCGCCTTTC 58.213 50.000 0.00 0.00 44.43 2.62
2908 4785 2.243602 TTAACCACGAACTCGCCTTT 57.756 45.000 0.00 0.00 44.43 3.11
2909 4786 2.073816 CATTAACCACGAACTCGCCTT 58.926 47.619 0.00 0.00 44.43 4.35
2910 4787 1.274167 TCATTAACCACGAACTCGCCT 59.726 47.619 0.00 0.00 44.43 5.52
2911 4788 1.717194 TCATTAACCACGAACTCGCC 58.283 50.000 0.00 0.00 44.43 5.54
2912 4789 4.565564 ACTATTCATTAACCACGAACTCGC 59.434 41.667 0.00 0.00 44.43 5.03
2913 4790 6.642683 AACTATTCATTAACCACGAACTCG 57.357 37.500 0.00 0.00 46.33 4.18
2914 4791 7.253883 CGGTAACTATTCATTAACCACGAACTC 60.254 40.741 0.00 0.00 0.00 3.01
2915 4792 6.532657 CGGTAACTATTCATTAACCACGAACT 59.467 38.462 0.00 0.00 0.00 3.01
2916 4793 6.311200 ACGGTAACTATTCATTAACCACGAAC 59.689 38.462 0.00 0.00 0.00 3.95
2917 4794 6.397272 ACGGTAACTATTCATTAACCACGAA 58.603 36.000 0.00 0.00 0.00 3.85
2918 4795 5.964758 ACGGTAACTATTCATTAACCACGA 58.035 37.500 0.00 0.00 0.00 4.35
2919 4796 6.091169 ACAACGGTAACTATTCATTAACCACG 59.909 38.462 0.00 0.00 0.00 4.94
2920 4797 7.368480 ACAACGGTAACTATTCATTAACCAC 57.632 36.000 0.00 0.00 0.00 4.16
2921 4798 7.982761 AACAACGGTAACTATTCATTAACCA 57.017 32.000 0.00 0.00 0.00 3.67
2922 4799 9.369904 TCTAACAACGGTAACTATTCATTAACC 57.630 33.333 0.00 0.00 0.00 2.85
2924 4801 9.926158 TGTCTAACAACGGTAACTATTCATTAA 57.074 29.630 0.00 0.00 0.00 1.40
2925 4802 9.926158 TTGTCTAACAACGGTAACTATTCATTA 57.074 29.630 0.00 0.00 32.34 1.90
2926 4803 8.836268 TTGTCTAACAACGGTAACTATTCATT 57.164 30.769 0.00 0.00 32.34 2.57
2927 4804 8.836268 TTTGTCTAACAACGGTAACTATTCAT 57.164 30.769 0.00 0.00 37.90 2.57
2928 4805 8.836268 ATTTGTCTAACAACGGTAACTATTCA 57.164 30.769 0.00 0.00 37.90 2.57
2931 4808 8.876790 GCTAATTTGTCTAACAACGGTAACTAT 58.123 33.333 0.00 0.00 37.90 2.12
2932 4809 7.331687 GGCTAATTTGTCTAACAACGGTAACTA 59.668 37.037 0.00 0.00 37.90 2.24
2933 4810 6.148315 GGCTAATTTGTCTAACAACGGTAACT 59.852 38.462 0.00 0.00 37.90 2.24
2934 4811 6.148315 AGGCTAATTTGTCTAACAACGGTAAC 59.852 38.462 0.00 0.00 37.90 2.50
2935 4812 6.232692 AGGCTAATTTGTCTAACAACGGTAA 58.767 36.000 0.00 0.00 37.90 2.85
2936 4813 5.797051 AGGCTAATTTGTCTAACAACGGTA 58.203 37.500 0.00 0.00 37.90 4.02
2937 4814 4.648651 AGGCTAATTTGTCTAACAACGGT 58.351 39.130 0.00 0.00 37.90 4.83
2938 4815 5.622770 AAGGCTAATTTGTCTAACAACGG 57.377 39.130 0.00 0.00 37.90 4.44
2939 4816 7.241376 CCTAAAGGCTAATTTGTCTAACAACG 58.759 38.462 0.00 0.00 37.90 4.10
2989 4866 6.214615 TCCCATAAAGTTGTTGATCTAGTCCA 59.785 38.462 0.00 0.00 0.00 4.02
3054 4942 1.960040 TACAGGGGCTGCATCGAGTG 61.960 60.000 0.50 0.00 34.37 3.51
3055 4943 1.050988 ATACAGGGGCTGCATCGAGT 61.051 55.000 0.50 0.61 34.37 4.18
3056 4944 0.969149 TATACAGGGGCTGCATCGAG 59.031 55.000 0.50 0.00 34.37 4.04
3057 4945 0.969149 CTATACAGGGGCTGCATCGA 59.031 55.000 0.50 0.00 34.37 3.59
3058 4946 0.671781 GCTATACAGGGGCTGCATCG 60.672 60.000 0.50 0.00 34.37 3.84
3059 4947 0.322008 GGCTATACAGGGGCTGCATC 60.322 60.000 0.50 0.00 34.37 3.91
3088 4976 1.551883 GCTACTGGGGACGTAAAAGGA 59.448 52.381 0.00 0.00 0.00 3.36
3094 4982 0.974010 CCCTTGCTACTGGGGACGTA 60.974 60.000 0.00 0.00 42.58 3.57
3095 4983 2.291043 CCCTTGCTACTGGGGACGT 61.291 63.158 0.00 0.00 42.58 4.34
3100 4988 0.625849 AACATCCCCTTGCTACTGGG 59.374 55.000 0.00 0.00 42.98 4.45
3109 4997 2.291217 GCTTCTTCTCCAACATCCCCTT 60.291 50.000 0.00 0.00 0.00 3.95
3113 5001 1.742268 GCTGCTTCTTCTCCAACATCC 59.258 52.381 0.00 0.00 0.00 3.51
3122 5010 0.601311 GTCACCGTGCTGCTTCTTCT 60.601 55.000 0.00 0.00 0.00 2.85
3263 5151 5.955961 AAAGGGGGTTTTCATTATGGATG 57.044 39.130 0.00 0.00 37.08 3.51
3334 5225 0.438445 CGTAAGCACACCACACATCG 59.562 55.000 0.00 0.00 0.00 3.84
3351 5242 1.078214 CCAGGTGTGCCATGATCGT 60.078 57.895 0.00 0.00 37.19 3.73
3359 5250 1.456705 TTTTGACCCCAGGTGTGCC 60.457 57.895 0.00 0.00 35.25 5.01
3392 5283 4.552166 ACGATTGAAACAAACTGTGAGG 57.448 40.909 0.00 0.00 0.00 3.86
3398 5289 8.237267 GGAATTGATCTACGATTGAAACAAACT 58.763 33.333 0.00 0.00 33.21 2.66
3410 5301 6.049149 GGAGAATGTTGGAATTGATCTACGA 58.951 40.000 0.00 0.00 0.00 3.43
3449 5343 8.133024 AGAATGGGCTTATGATGTTTGTTAAA 57.867 30.769 0.00 0.00 0.00 1.52
3651 5545 6.714810 GCCACCCATACTTATGATTATGTTGA 59.285 38.462 0.00 0.00 35.75 3.18
3691 5585 6.515272 ACATGTGAATGTTTTACAGATCCC 57.485 37.500 0.00 0.00 0.00 3.85
3697 5591 8.652463 CGTATGAGTACATGTGAATGTTTTACA 58.348 33.333 9.11 0.00 37.87 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.