Multiple sequence alignment - TraesCS3A01G528800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G528800 chr3A 100.000 7080 0 0 1 7080 742618089 742611010 0.000000e+00 13075.0
1 TraesCS3A01G528800 chr3A 91.373 1704 130 13 3176 4869 742768934 742767238 0.000000e+00 2316.0
2 TraesCS3A01G528800 chr3A 85.789 1337 105 35 3187 4460 359081695 359080381 0.000000e+00 1338.0
3 TraesCS3A01G528800 chr3A 82.444 1293 142 54 5186 6445 742766850 742765610 0.000000e+00 1051.0
4 TraesCS3A01G528800 chr3A 99.042 522 5 0 6527 7048 17405376 17404855 0.000000e+00 937.0
5 TraesCS3A01G528800 chr3A 99.042 522 5 0 6527 7048 737479808 737480329 0.000000e+00 937.0
6 TraesCS3A01G528800 chr3A 88.975 517 43 9 5867 6373 359077814 359077302 1.680000e-175 627.0
7 TraesCS3A01G528800 chr3A 86.051 552 54 14 4643 5179 359079621 359079078 7.970000e-159 571.0
8 TraesCS3A01G528800 chr3A 89.406 387 25 9 5218 5604 359079008 359078638 2.310000e-129 473.0
9 TraesCS3A01G528800 chr3A 92.830 265 14 1 4925 5184 742767152 742766888 5.180000e-101 379.0
10 TraesCS3A01G528800 chr3A 86.824 296 23 6 911 1196 742770264 742769975 4.120000e-82 316.0
11 TraesCS3A01G528800 chr3A 95.946 74 3 0 1108 1181 359082386 359082313 3.470000e-23 121.0
12 TraesCS3A01G528800 chr3A 90.000 70 7 0 6376 6445 359077175 359077106 2.720000e-14 91.6
13 TraesCS3A01G528800 chr3D 94.513 4939 187 31 1656 6526 609171093 609166171 0.000000e+00 7542.0
14 TraesCS3A01G528800 chr3D 90.708 1313 95 14 3185 4484 609215929 609214631 0.000000e+00 1724.0
15 TraesCS3A01G528800 chr3D 85.148 1488 127 36 3187 4617 274338070 274339520 0.000000e+00 1437.0
16 TraesCS3A01G528800 chr3D 85.783 1245 71 32 397 1608 609172268 609171097 0.000000e+00 1221.0
17 TraesCS3A01G528800 chr3D 83.675 1317 113 50 5186 6445 609213652 609212381 0.000000e+00 1147.0
18 TraesCS3A01G528800 chr3D 87.627 687 60 11 4517 5184 609214369 609213689 0.000000e+00 774.0
19 TraesCS3A01G528800 chr3D 86.305 701 71 15 5755 6445 274341745 274342430 0.000000e+00 739.0
20 TraesCS3A01G528800 chr3D 85.584 548 58 8 4643 5176 274340090 274340630 8.020000e-154 555.0
21 TraesCS3A01G528800 chr3D 86.434 516 53 10 4683 5183 609555797 609556310 3.730000e-152 549.0
22 TraesCS3A01G528800 chr3D 88.564 411 28 9 5216 5626 274340703 274341094 1.380000e-131 481.0
23 TraesCS3A01G528800 chr3D 85.843 445 44 12 5188 5626 609556350 609556781 8.370000e-124 455.0
24 TraesCS3A01G528800 chr3D 94.783 115 6 0 1108 1222 609217089 609216975 5.640000e-41 180.0
25 TraesCS3A01G528800 chr3D 84.066 182 12 7 931 1102 609217302 609217128 7.350000e-35 159.0
26 TraesCS3A01G528800 chr3B 91.413 2271 121 28 4229 6445 819898592 819896342 0.000000e+00 3046.0
27 TraesCS3A01G528800 chr3B 89.779 1761 139 21 3446 5182 819932803 819931060 0.000000e+00 2217.0
28 TraesCS3A01G528800 chr3B 94.172 1287 49 6 2977 4245 819899885 819898607 0.000000e+00 1938.0
29 TraesCS3A01G528800 chr3B 84.232 1503 118 49 3187 4617 359227615 359226160 0.000000e+00 1352.0
30 TraesCS3A01G528800 chr3B 85.658 1262 120 41 1701 2948 819901092 819899878 0.000000e+00 1271.0
31 TraesCS3A01G528800 chr3B 83.865 1159 145 20 1644 2771 380090446 380089299 0.000000e+00 1066.0
32 TraesCS3A01G528800 chr3B 87.813 878 49 23 775 1599 819901985 819901113 0.000000e+00 976.0
33 TraesCS3A01G528800 chr3B 82.030 1202 113 38 5188 6307 819931019 819929839 0.000000e+00 928.0
34 TraesCS3A01G528800 chr3B 86.083 697 66 18 5755 6445 359223738 359223067 0.000000e+00 721.0
35 TraesCS3A01G528800 chr3B 86.157 549 53 11 4643 5176 359225590 359225050 7.970000e-159 571.0
36 TraesCS3A01G528800 chr3B 88.889 387 27 8 5216 5602 359224977 359224607 5.000000e-126 462.0
37 TraesCS3A01G528800 chr3B 90.845 284 22 3 3170 3451 819933111 819932830 1.860000e-100 377.0
38 TraesCS3A01G528800 chr3B 79.634 383 39 11 338 711 819902358 819902006 9.180000e-59 239.0
39 TraesCS3A01G528800 chr3B 90.141 142 12 2 1108 1247 819934268 819934127 4.360000e-42 183.0
40 TraesCS3A01G528800 chr3B 88.889 108 5 2 1108 1215 359228449 359228349 7.460000e-25 126.0
41 TraesCS3A01G528800 chr7D 84.481 1147 135 27 1654 2775 454843527 454842399 0.000000e+00 1092.0
42 TraesCS3A01G528800 chr7D 83.786 1178 136 33 1628 2771 556474753 556473597 0.000000e+00 1066.0
43 TraesCS3A01G528800 chr7D 97.368 38 1 0 297 334 333732980 333733017 1.650000e-06 65.8
44 TraesCS3A01G528800 chr5D 83.689 1171 163 17 1623 2778 336411599 336410442 0.000000e+00 1079.0
45 TraesCS3A01G528800 chr5D 92.308 65 5 0 1105 1169 346876508 346876572 7.560000e-15 93.5
46 TraesCS3A01G528800 chr6B 83.901 1174 142 35 1635 2772 609644860 609646022 0.000000e+00 1077.0
47 TraesCS3A01G528800 chr6B 98.654 520 7 0 6529 7048 199747730 199748249 0.000000e+00 922.0
48 TraesCS3A01G528800 chr2D 83.009 1130 155 24 1656 2757 38254907 38256027 0.000000e+00 989.0
49 TraesCS3A01G528800 chr2D 83.117 1078 146 24 1713 2775 607719897 607720953 0.000000e+00 950.0
50 TraesCS3A01G528800 chr2D 97.436 39 1 0 296 334 30739322 30739284 4.580000e-07 67.6
51 TraesCS3A01G528800 chr2A 83.594 1085 137 28 1712 2771 51386072 51385004 0.000000e+00 979.0
52 TraesCS3A01G528800 chr2A 82.353 1173 148 34 1646 2778 524501714 524502867 0.000000e+00 965.0
53 TraesCS3A01G528800 chr2A 80.818 1173 147 38 1628 2763 661405030 661403899 0.000000e+00 848.0
54 TraesCS3A01G528800 chr7A 81.949 1180 165 31 1622 2771 438992240 438991079 0.000000e+00 955.0
55 TraesCS3A01G528800 chr7A 95.000 40 1 1 296 334 39795645 39795606 2.130000e-05 62.1
56 TraesCS3A01G528800 chr5B 99.042 522 5 0 6527 7048 508061186 508060665 0.000000e+00 937.0
57 TraesCS3A01G528800 chr5B 81.447 1175 170 27 1629 2771 523189217 523190375 0.000000e+00 918.0
58 TraesCS3A01G528800 chr5B 93.548 62 4 0 1108 1169 404145206 404145145 7.560000e-15 93.5
59 TraesCS3A01G528800 chr7B 98.851 522 6 0 6527 7048 468247126 468247647 0.000000e+00 931.0
60 TraesCS3A01G528800 chr7B 98.286 525 9 0 6524 7048 60246125 60246649 0.000000e+00 920.0
61 TraesCS3A01G528800 chr7B 85.771 253 32 4 83 334 704821088 704821337 1.510000e-66 265.0
62 TraesCS3A01G528800 chr7B 83.858 254 36 3 83 334 704890062 704890312 3.300000e-58 237.0
63 TraesCS3A01G528800 chr2B 98.851 522 6 0 6527 7048 791018975 791018454 0.000000e+00 931.0
64 TraesCS3A01G528800 chr2B 93.023 43 3 0 295 337 799541974 799541932 5.930000e-06 63.9
65 TraesCS3A01G528800 chr1A 98.662 523 7 0 6526 7048 564677719 564677197 0.000000e+00 928.0
66 TraesCS3A01G528800 chr5A 98.470 523 8 0 6526 7048 634050011 634049489 0.000000e+00 922.0
67 TraesCS3A01G528800 chr5A 93.548 62 4 0 1108 1169 444851328 444851267 7.560000e-15 93.5
68 TraesCS3A01G528800 chr5A 97.436 39 1 0 296 334 404475311 404475349 4.580000e-07 67.6
69 TraesCS3A01G528800 chr5A 97.297 37 1 0 296 332 509746874 509746838 5.930000e-06 63.9
70 TraesCS3A01G528800 chr6D 84.069 929 103 28 1879 2778 322847737 322848649 0.000000e+00 854.0
71 TraesCS3A01G528800 chr6D 80.547 622 94 20 1645 2252 84299986 84300594 3.010000e-123 453.0
72 TraesCS3A01G528800 chr6D 79.650 629 83 25 1644 2240 9819261 9819876 1.840000e-110 411.0
73 TraesCS3A01G528800 chr6A 80.154 519 74 18 1656 2153 287629157 287629667 1.880000e-95 361.0
74 TraesCS3A01G528800 chr6A 100.000 31 0 0 304 334 177377761 177377791 2.760000e-04 58.4
75 TraesCS3A01G528800 chr4D 90.741 54 3 2 283 334 43382252 43382305 3.540000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G528800 chr3A 742611010 742618089 7079 True 13075.000000 13075 100.000000 1 7080 1 chr3A.!!$R2 7079
1 TraesCS3A01G528800 chr3A 742765610 742770264 4654 True 1015.500000 2316 88.367750 911 6445 4 chr3A.!!$R4 5534
2 TraesCS3A01G528800 chr3A 17404855 17405376 521 True 937.000000 937 99.042000 6527 7048 1 chr3A.!!$R1 521
3 TraesCS3A01G528800 chr3A 737479808 737480329 521 False 937.000000 937 99.042000 6527 7048 1 chr3A.!!$F1 521
4 TraesCS3A01G528800 chr3A 359077106 359082386 5280 True 536.933333 1338 89.361167 1108 6445 6 chr3A.!!$R3 5337
5 TraesCS3A01G528800 chr3D 609166171 609172268 6097 True 4381.500000 7542 90.148000 397 6526 2 chr3D.!!$R1 6129
6 TraesCS3A01G528800 chr3D 274338070 274342430 4360 False 803.000000 1437 86.400250 3187 6445 4 chr3D.!!$F1 3258
7 TraesCS3A01G528800 chr3D 609212381 609217302 4921 True 796.800000 1724 88.171800 931 6445 5 chr3D.!!$R2 5514
8 TraesCS3A01G528800 chr3D 609555797 609556781 984 False 502.000000 549 86.138500 4683 5626 2 chr3D.!!$F2 943
9 TraesCS3A01G528800 chr3B 819896342 819902358 6016 True 1494.000000 3046 87.738000 338 6445 5 chr3B.!!$R3 6107
10 TraesCS3A01G528800 chr3B 380089299 380090446 1147 True 1066.000000 1066 83.865000 1644 2771 1 chr3B.!!$R1 1127
11 TraesCS3A01G528800 chr3B 819929839 819934268 4429 True 926.250000 2217 88.198750 1108 6307 4 chr3B.!!$R4 5199
12 TraesCS3A01G528800 chr3B 359223067 359228449 5382 True 646.400000 1352 86.850000 1108 6445 5 chr3B.!!$R2 5337
13 TraesCS3A01G528800 chr7D 454842399 454843527 1128 True 1092.000000 1092 84.481000 1654 2775 1 chr7D.!!$R1 1121
14 TraesCS3A01G528800 chr7D 556473597 556474753 1156 True 1066.000000 1066 83.786000 1628 2771 1 chr7D.!!$R2 1143
15 TraesCS3A01G528800 chr5D 336410442 336411599 1157 True 1079.000000 1079 83.689000 1623 2778 1 chr5D.!!$R1 1155
16 TraesCS3A01G528800 chr6B 609644860 609646022 1162 False 1077.000000 1077 83.901000 1635 2772 1 chr6B.!!$F2 1137
17 TraesCS3A01G528800 chr6B 199747730 199748249 519 False 922.000000 922 98.654000 6529 7048 1 chr6B.!!$F1 519
18 TraesCS3A01G528800 chr2D 38254907 38256027 1120 False 989.000000 989 83.009000 1656 2757 1 chr2D.!!$F1 1101
19 TraesCS3A01G528800 chr2D 607719897 607720953 1056 False 950.000000 950 83.117000 1713 2775 1 chr2D.!!$F2 1062
20 TraesCS3A01G528800 chr2A 51385004 51386072 1068 True 979.000000 979 83.594000 1712 2771 1 chr2A.!!$R1 1059
21 TraesCS3A01G528800 chr2A 524501714 524502867 1153 False 965.000000 965 82.353000 1646 2778 1 chr2A.!!$F1 1132
22 TraesCS3A01G528800 chr2A 661403899 661405030 1131 True 848.000000 848 80.818000 1628 2763 1 chr2A.!!$R2 1135
23 TraesCS3A01G528800 chr7A 438991079 438992240 1161 True 955.000000 955 81.949000 1622 2771 1 chr7A.!!$R2 1149
24 TraesCS3A01G528800 chr5B 508060665 508061186 521 True 937.000000 937 99.042000 6527 7048 1 chr5B.!!$R2 521
25 TraesCS3A01G528800 chr5B 523189217 523190375 1158 False 918.000000 918 81.447000 1629 2771 1 chr5B.!!$F1 1142
26 TraesCS3A01G528800 chr7B 468247126 468247647 521 False 931.000000 931 98.851000 6527 7048 1 chr7B.!!$F2 521
27 TraesCS3A01G528800 chr7B 60246125 60246649 524 False 920.000000 920 98.286000 6524 7048 1 chr7B.!!$F1 524
28 TraesCS3A01G528800 chr2B 791018454 791018975 521 True 931.000000 931 98.851000 6527 7048 1 chr2B.!!$R1 521
29 TraesCS3A01G528800 chr1A 564677197 564677719 522 True 928.000000 928 98.662000 6526 7048 1 chr1A.!!$R1 522
30 TraesCS3A01G528800 chr5A 634049489 634050011 522 True 922.000000 922 98.470000 6526 7048 1 chr5A.!!$R3 522
31 TraesCS3A01G528800 chr6D 322847737 322848649 912 False 854.000000 854 84.069000 1879 2778 1 chr6D.!!$F3 899
32 TraesCS3A01G528800 chr6D 84299986 84300594 608 False 453.000000 453 80.547000 1645 2252 1 chr6D.!!$F2 607
33 TraesCS3A01G528800 chr6D 9819261 9819876 615 False 411.000000 411 79.650000 1644 2240 1 chr6D.!!$F1 596
34 TraesCS3A01G528800 chr6A 287629157 287629667 510 False 361.000000 361 80.154000 1656 2153 1 chr6A.!!$F2 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.108898 TTGCATAAATGTGTGGCGCC 60.109 50.000 22.73 22.73 0.00 6.53 F
999 1029 0.041090 ACCCCAACCACCATTCATCC 59.959 55.000 0.00 0.00 0.00 3.51 F
1271 1402 0.108138 CCTGGGAAAGTAGTGGCTCG 60.108 60.000 0.00 0.00 0.00 5.03 F
2641 3007 0.732571 GCGGATTGATTCCTTCGCAA 59.267 50.000 0.00 0.00 42.99 4.85 F
3264 4555 3.230134 GGATATTTGCCATGCCTACCAA 58.770 45.455 0.00 0.00 0.00 3.67 F
3419 4710 4.202461 GGTCCCTAAGGTAATCATGCATGA 60.202 45.833 30.47 30.47 41.70 3.07 F
4182 5563 2.091555 TGGAACCTACAAAAGCCTGGTT 60.092 45.455 0.00 0.00 42.85 3.67 F
4921 7223 3.815809 CAGTTCCTTCCCAACAACACTA 58.184 45.455 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1794 0.243636 CCCGGATTCTTTTGCACCAC 59.756 55.000 0.73 0.00 0.00 4.16 R
2803 3173 1.603739 GACTTGGGCACACCTTCCC 60.604 63.158 0.00 0.00 42.93 3.97 R
3131 3812 3.394313 ACGAACACGGAACACTTTTTC 57.606 42.857 0.00 0.00 0.00 2.29 R
4090 5471 1.280457 GGATAGGTAGGCATCCCTGG 58.720 60.000 0.00 0.00 42.90 4.45 R
4182 5563 1.659022 TAACCAAAGGACGATGGGGA 58.341 50.000 0.00 0.00 41.17 4.81 R
4921 7223 5.774690 TCTTGACCTGCTCAACCATTAATTT 59.225 36.000 0.00 0.00 33.65 1.82 R
5883 9089 0.693049 ACGCACCTGAAGAAAGGGAT 59.307 50.000 0.00 0.00 42.11 3.85 R
6432 9793 1.227002 GTCTACGTAGCTGCAGGGC 60.227 63.158 18.00 2.13 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.333528 GCTAAGAATACATCATGGAAAACCA 57.666 36.000 0.00 0.00 0.00 3.67
25 26 7.196331 GCTAAGAATACATCATGGAAAACCAC 58.804 38.462 0.00 0.00 0.00 4.16
26 27 7.067494 GCTAAGAATACATCATGGAAAACCACT 59.933 37.037 0.00 0.00 0.00 4.00
27 28 7.781324 AAGAATACATCATGGAAAACCACTT 57.219 32.000 0.00 0.00 0.00 3.16
28 29 7.781324 AGAATACATCATGGAAAACCACTTT 57.219 32.000 0.00 0.00 0.00 2.66
29 30 8.877864 AGAATACATCATGGAAAACCACTTTA 57.122 30.769 0.00 0.00 0.00 1.85
30 31 8.960591 AGAATACATCATGGAAAACCACTTTAG 58.039 33.333 0.00 0.00 0.00 1.85
31 32 5.982890 ACATCATGGAAAACCACTTTAGG 57.017 39.130 0.00 0.00 0.00 2.69
32 33 5.393866 ACATCATGGAAAACCACTTTAGGT 58.606 37.500 0.00 0.00 45.91 3.08
33 34 5.476945 ACATCATGGAAAACCACTTTAGGTC 59.523 40.000 0.00 0.00 42.25 3.85
34 35 4.403734 TCATGGAAAACCACTTTAGGTCC 58.596 43.478 0.00 0.00 42.25 4.46
35 36 3.955524 TGGAAAACCACTTTAGGTCCA 57.044 42.857 0.00 0.00 42.25 4.02
36 37 3.558033 TGGAAAACCACTTTAGGTCCAC 58.442 45.455 0.00 0.00 42.25 4.02
37 38 3.203487 TGGAAAACCACTTTAGGTCCACT 59.797 43.478 0.00 0.00 42.25 4.00
38 39 3.819337 GGAAAACCACTTTAGGTCCACTC 59.181 47.826 0.00 0.00 42.25 3.51
39 40 4.457466 GAAAACCACTTTAGGTCCACTCA 58.543 43.478 0.00 0.00 42.25 3.41
40 41 3.487120 AACCACTTTAGGTCCACTCAC 57.513 47.619 0.00 0.00 42.25 3.51
41 42 1.697982 ACCACTTTAGGTCCACTCACC 59.302 52.381 0.00 0.00 37.28 4.02
43 44 2.372172 CCACTTTAGGTCCACTCACCTT 59.628 50.000 0.00 0.00 45.24 3.50
44 45 3.403038 CACTTTAGGTCCACTCACCTTG 58.597 50.000 0.00 0.00 45.24 3.61
45 46 2.372172 ACTTTAGGTCCACTCACCTTGG 59.628 50.000 0.00 0.00 45.24 3.61
46 47 1.358152 TTAGGTCCACTCACCTTGGG 58.642 55.000 0.00 0.00 45.24 4.12
47 48 0.490017 TAGGTCCACTCACCTTGGGA 59.510 55.000 0.00 0.00 45.24 4.37
48 49 1.128188 AGGTCCACTCACCTTGGGAC 61.128 60.000 0.00 0.00 45.24 4.46
49 50 3.810931 AGGTCCACTCACCTTGGGACA 62.811 57.143 11.35 0.00 45.24 4.02
50 51 5.885147 TAGGTCCACTCACCTTGGGACAA 62.885 52.174 11.35 0.00 45.24 3.18
65 66 5.581126 TGGGACAAAATCATTGATACTGC 57.419 39.130 0.00 0.00 31.92 4.40
66 67 4.096231 TGGGACAAAATCATTGATACTGCG 59.904 41.667 0.00 0.00 31.92 5.18
67 68 4.096382 GGGACAAAATCATTGATACTGCGT 59.904 41.667 0.00 0.00 0.00 5.24
68 69 5.030295 GGACAAAATCATTGATACTGCGTG 58.970 41.667 0.00 0.00 0.00 5.34
69 70 4.985413 ACAAAATCATTGATACTGCGTGG 58.015 39.130 0.00 0.00 0.00 4.94
70 71 4.458989 ACAAAATCATTGATACTGCGTGGT 59.541 37.500 0.00 0.00 0.00 4.16
71 72 5.048083 ACAAAATCATTGATACTGCGTGGTT 60.048 36.000 0.00 0.00 0.00 3.67
72 73 5.643379 AAATCATTGATACTGCGTGGTTT 57.357 34.783 0.00 0.00 0.00 3.27
73 74 5.643379 AATCATTGATACTGCGTGGTTTT 57.357 34.783 0.00 0.00 0.00 2.43
74 75 4.418013 TCATTGATACTGCGTGGTTTTG 57.582 40.909 0.00 0.00 0.00 2.44
75 76 3.818210 TCATTGATACTGCGTGGTTTTGT 59.182 39.130 0.00 0.00 0.00 2.83
76 77 3.617540 TTGATACTGCGTGGTTTTGTG 57.382 42.857 0.00 0.00 0.00 3.33
77 78 1.876799 TGATACTGCGTGGTTTTGTGG 59.123 47.619 0.00 0.00 0.00 4.17
78 79 2.147958 GATACTGCGTGGTTTTGTGGA 58.852 47.619 0.00 0.00 0.00 4.02
79 80 2.264005 TACTGCGTGGTTTTGTGGAT 57.736 45.000 0.00 0.00 0.00 3.41
80 81 1.398692 ACTGCGTGGTTTTGTGGATT 58.601 45.000 0.00 0.00 0.00 3.01
81 82 1.754226 ACTGCGTGGTTTTGTGGATTT 59.246 42.857 0.00 0.00 0.00 2.17
82 83 2.167487 ACTGCGTGGTTTTGTGGATTTT 59.833 40.909 0.00 0.00 0.00 1.82
83 84 2.794350 CTGCGTGGTTTTGTGGATTTTC 59.206 45.455 0.00 0.00 0.00 2.29
84 85 2.428890 TGCGTGGTTTTGTGGATTTTCT 59.571 40.909 0.00 0.00 0.00 2.52
85 86 3.632604 TGCGTGGTTTTGTGGATTTTCTA 59.367 39.130 0.00 0.00 0.00 2.10
86 87 3.978855 GCGTGGTTTTGTGGATTTTCTAC 59.021 43.478 0.00 0.00 0.00 2.59
87 88 4.261447 GCGTGGTTTTGTGGATTTTCTACT 60.261 41.667 0.00 0.00 0.00 2.57
88 89 5.449304 CGTGGTTTTGTGGATTTTCTACTC 58.551 41.667 0.00 0.00 0.00 2.59
89 90 5.008217 CGTGGTTTTGTGGATTTTCTACTCA 59.992 40.000 0.00 0.00 0.00 3.41
90 91 6.459024 CGTGGTTTTGTGGATTTTCTACTCAA 60.459 38.462 0.00 0.00 0.00 3.02
91 92 6.918022 GTGGTTTTGTGGATTTTCTACTCAAG 59.082 38.462 0.00 0.00 0.00 3.02
92 93 6.831353 TGGTTTTGTGGATTTTCTACTCAAGA 59.169 34.615 0.00 0.00 0.00 3.02
93 94 7.139392 GGTTTTGTGGATTTTCTACTCAAGAC 58.861 38.462 0.00 0.00 32.51 3.01
94 95 7.201785 GGTTTTGTGGATTTTCTACTCAAGACA 60.202 37.037 0.00 0.00 32.51 3.41
95 96 7.496529 TTTGTGGATTTTCTACTCAAGACAG 57.503 36.000 0.00 0.00 32.51 3.51
96 97 5.551233 TGTGGATTTTCTACTCAAGACAGG 58.449 41.667 0.00 0.00 32.51 4.00
97 98 5.071788 TGTGGATTTTCTACTCAAGACAGGT 59.928 40.000 0.00 0.00 32.51 4.00
98 99 6.269077 TGTGGATTTTCTACTCAAGACAGGTA 59.731 38.462 0.00 0.00 32.51 3.08
99 100 7.159372 GTGGATTTTCTACTCAAGACAGGTAA 58.841 38.462 0.00 0.00 32.51 2.85
100 101 7.117956 GTGGATTTTCTACTCAAGACAGGTAAC 59.882 40.741 0.00 0.00 32.51 2.50
125 126 8.957466 ACTAGAAGTATTTTTAAAGACATGGCC 58.043 33.333 0.00 0.00 32.79 5.36
126 127 7.775053 AGAAGTATTTTTAAAGACATGGCCA 57.225 32.000 8.56 8.56 32.79 5.36
127 128 8.189119 AGAAGTATTTTTAAAGACATGGCCAA 57.811 30.769 10.96 0.00 32.79 4.52
128 129 8.815912 AGAAGTATTTTTAAAGACATGGCCAAT 58.184 29.630 10.96 0.00 32.79 3.16
129 130 9.435688 GAAGTATTTTTAAAGACATGGCCAATT 57.564 29.630 10.96 0.00 32.79 2.32
130 131 9.435688 AAGTATTTTTAAAGACATGGCCAATTC 57.564 29.630 10.96 9.49 32.79 2.17
131 132 8.592809 AGTATTTTTAAAGACATGGCCAATTCA 58.407 29.630 10.96 0.00 32.79 2.57
132 133 9.213799 GTATTTTTAAAGACATGGCCAATTCAA 57.786 29.630 10.96 0.00 30.84 2.69
133 134 8.866970 ATTTTTAAAGACATGGCCAATTCAAT 57.133 26.923 10.96 4.71 0.00 2.57
134 135 8.688747 TTTTTAAAGACATGGCCAATTCAATT 57.311 26.923 10.96 10.82 0.00 2.32
135 136 8.688747 TTTTAAAGACATGGCCAATTCAATTT 57.311 26.923 10.96 9.26 0.00 1.82
136 137 8.688747 TTTAAAGACATGGCCAATTCAATTTT 57.311 26.923 10.96 8.49 0.00 1.82
137 138 8.688747 TTAAAGACATGGCCAATTCAATTTTT 57.311 26.923 10.96 8.15 0.00 1.94
138 139 6.806388 AAGACATGGCCAATTCAATTTTTC 57.194 33.333 10.96 0.00 0.00 2.29
139 140 5.867330 AGACATGGCCAATTCAATTTTTCA 58.133 33.333 10.96 0.00 0.00 2.69
140 141 5.702209 AGACATGGCCAATTCAATTTTTCAC 59.298 36.000 10.96 0.00 0.00 3.18
141 142 5.374921 ACATGGCCAATTCAATTTTTCACA 58.625 33.333 10.96 0.00 0.00 3.58
142 143 5.239087 ACATGGCCAATTCAATTTTTCACAC 59.761 36.000 10.96 0.00 0.00 3.82
143 144 5.033589 TGGCCAATTCAATTTTTCACACT 57.966 34.783 0.61 0.00 0.00 3.55
144 145 6.166984 TGGCCAATTCAATTTTTCACACTA 57.833 33.333 0.61 0.00 0.00 2.74
145 146 6.767456 TGGCCAATTCAATTTTTCACACTAT 58.233 32.000 0.61 0.00 0.00 2.12
146 147 7.222872 TGGCCAATTCAATTTTTCACACTATT 58.777 30.769 0.61 0.00 0.00 1.73
147 148 7.718753 TGGCCAATTCAATTTTTCACACTATTT 59.281 29.630 0.61 0.00 0.00 1.40
148 149 8.567104 GGCCAATTCAATTTTTCACACTATTTT 58.433 29.630 0.00 0.00 0.00 1.82
149 150 9.597999 GCCAATTCAATTTTTCACACTATTTTC 57.402 29.630 0.00 0.00 0.00 2.29
177 178 7.547227 ACTTTAAAATGCTTATAAGGTGCTGG 58.453 34.615 14.28 0.00 0.00 4.85
178 179 7.396055 ACTTTAAAATGCTTATAAGGTGCTGGA 59.604 33.333 14.28 0.00 0.00 3.86
179 180 7.710676 TTAAAATGCTTATAAGGTGCTGGAA 57.289 32.000 14.28 0.00 0.00 3.53
180 181 5.582689 AAATGCTTATAAGGTGCTGGAAC 57.417 39.130 14.28 0.00 0.00 3.62
181 182 3.712016 TGCTTATAAGGTGCTGGAACA 57.288 42.857 14.28 0.00 0.00 3.18
182 183 4.027674 TGCTTATAAGGTGCTGGAACAA 57.972 40.909 14.28 0.00 38.70 2.83
183 184 4.402829 TGCTTATAAGGTGCTGGAACAAA 58.597 39.130 14.28 0.00 38.70 2.83
184 185 4.217550 TGCTTATAAGGTGCTGGAACAAAC 59.782 41.667 14.28 0.00 38.70 2.93
185 186 4.217550 GCTTATAAGGTGCTGGAACAAACA 59.782 41.667 14.28 0.00 38.70 2.83
186 187 5.278758 GCTTATAAGGTGCTGGAACAAACAA 60.279 40.000 14.28 0.00 38.70 2.83
187 188 2.959507 AAGGTGCTGGAACAAACAAC 57.040 45.000 0.00 0.00 38.70 3.32
188 189 1.111277 AGGTGCTGGAACAAACAACC 58.889 50.000 0.00 0.00 38.70 3.77
189 190 0.820871 GGTGCTGGAACAAACAACCA 59.179 50.000 0.00 0.00 38.70 3.67
190 191 1.470805 GGTGCTGGAACAAACAACCAC 60.471 52.381 0.00 0.00 38.70 4.16
191 192 1.203523 GTGCTGGAACAAACAACCACA 59.796 47.619 0.00 0.00 38.70 4.17
192 193 1.203523 TGCTGGAACAAACAACCACAC 59.796 47.619 0.00 0.00 38.70 3.82
193 194 1.203523 GCTGGAACAAACAACCACACA 59.796 47.619 0.00 0.00 38.70 3.72
194 195 2.353208 GCTGGAACAAACAACCACACAA 60.353 45.455 0.00 0.00 38.70 3.33
195 196 3.678529 GCTGGAACAAACAACCACACAAT 60.679 43.478 0.00 0.00 38.70 2.71
196 197 4.111916 CTGGAACAAACAACCACACAATC 58.888 43.478 0.00 0.00 38.70 2.67
197 198 3.511540 TGGAACAAACAACCACACAATCA 59.488 39.130 0.00 0.00 31.92 2.57
198 199 4.161189 TGGAACAAACAACCACACAATCAT 59.839 37.500 0.00 0.00 31.92 2.45
199 200 4.507388 GGAACAAACAACCACACAATCATG 59.493 41.667 0.00 0.00 0.00 3.07
200 201 4.734398 ACAAACAACCACACAATCATGT 57.266 36.364 0.00 0.00 41.61 3.21
201 202 5.843673 ACAAACAACCACACAATCATGTA 57.156 34.783 0.00 0.00 37.82 2.29
202 203 6.214191 ACAAACAACCACACAATCATGTAA 57.786 33.333 0.00 0.00 37.82 2.41
203 204 6.039616 ACAAACAACCACACAATCATGTAAC 58.960 36.000 0.00 0.00 37.82 2.50
204 205 5.843673 AACAACCACACAATCATGTAACA 57.156 34.783 0.00 0.00 37.82 2.41
205 206 6.403866 AACAACCACACAATCATGTAACAT 57.596 33.333 0.00 0.00 37.82 2.71
206 207 7.517614 AACAACCACACAATCATGTAACATA 57.482 32.000 0.00 0.00 37.82 2.29
207 208 7.701539 ACAACCACACAATCATGTAACATAT 57.298 32.000 0.00 0.00 37.82 1.78
208 209 8.121305 ACAACCACACAATCATGTAACATATT 57.879 30.769 0.00 0.00 37.82 1.28
209 210 8.028354 ACAACCACACAATCATGTAACATATTG 58.972 33.333 0.00 0.00 37.82 1.90
210 211 6.563422 ACCACACAATCATGTAACATATTGC 58.437 36.000 0.00 0.00 37.82 3.56
211 212 6.152492 ACCACACAATCATGTAACATATTGCA 59.848 34.615 0.00 0.00 37.82 4.08
212 213 7.147863 ACCACACAATCATGTAACATATTGCAT 60.148 33.333 0.00 0.00 41.32 3.96
213 214 8.351461 CCACACAATCATGTAACATATTGCATA 58.649 33.333 0.00 0.00 38.91 3.14
214 215 9.733219 CACACAATCATGTAACATATTGCATAA 57.267 29.630 0.00 0.00 38.91 1.90
221 222 9.733219 TCATGTAACATATTGCATAAATGTGTG 57.267 29.630 9.15 7.19 46.43 3.82
222 223 8.970293 CATGTAACATATTGCATAAATGTGTGG 58.030 33.333 9.15 0.00 46.43 4.17
223 224 6.977502 TGTAACATATTGCATAAATGTGTGGC 59.022 34.615 9.15 3.21 46.43 5.01
224 225 4.609947 ACATATTGCATAAATGTGTGGCG 58.390 39.130 7.94 0.00 45.68 5.69
225 226 1.925229 ATTGCATAAATGTGTGGCGC 58.075 45.000 0.00 0.00 0.00 6.53
226 227 0.108898 TTGCATAAATGTGTGGCGCC 60.109 50.000 22.73 22.73 0.00 6.53
227 228 1.586042 GCATAAATGTGTGGCGCCG 60.586 57.895 23.90 3.85 0.00 6.46
228 229 1.800032 CATAAATGTGTGGCGCCGT 59.200 52.632 23.90 1.68 0.00 5.68
229 230 0.523125 CATAAATGTGTGGCGCCGTG 60.523 55.000 23.90 5.17 0.00 4.94
230 231 0.958382 ATAAATGTGTGGCGCCGTGT 60.958 50.000 23.90 2.51 0.00 4.49
231 232 1.570347 TAAATGTGTGGCGCCGTGTC 61.570 55.000 23.90 12.62 0.00 3.67
232 233 4.617520 ATGTGTGGCGCCGTGTCA 62.618 61.111 23.90 17.96 0.00 3.58
233 234 4.840005 TGTGTGGCGCCGTGTCAA 62.840 61.111 23.90 0.00 31.00 3.18
234 235 3.578272 GTGTGGCGCCGTGTCAAA 61.578 61.111 23.90 0.00 31.00 2.69
235 236 2.824489 TGTGGCGCCGTGTCAAAA 60.824 55.556 23.90 0.00 31.00 2.44
236 237 2.190170 TGTGGCGCCGTGTCAAAAT 61.190 52.632 23.90 0.00 31.00 1.82
237 238 0.885150 TGTGGCGCCGTGTCAAAATA 60.885 50.000 23.90 0.00 31.00 1.40
238 239 0.179200 GTGGCGCCGTGTCAAAATAG 60.179 55.000 23.90 0.00 31.00 1.73
239 240 0.320858 TGGCGCCGTGTCAAAATAGA 60.321 50.000 23.90 0.00 0.00 1.98
240 241 0.800012 GGCGCCGTGTCAAAATAGAA 59.200 50.000 12.58 0.00 0.00 2.10
241 242 1.202031 GGCGCCGTGTCAAAATAGAAG 60.202 52.381 12.58 0.00 0.00 2.85
242 243 1.730064 GCGCCGTGTCAAAATAGAAGA 59.270 47.619 0.00 0.00 0.00 2.87
243 244 2.474032 GCGCCGTGTCAAAATAGAAGAC 60.474 50.000 0.00 0.00 0.00 3.01
244 245 2.734606 CGCCGTGTCAAAATAGAAGACA 59.265 45.455 0.00 0.00 39.74 3.41
250 251 4.312443 TGTCAAAATAGAAGACACGGACC 58.688 43.478 0.00 0.00 37.36 4.46
251 252 4.039973 TGTCAAAATAGAAGACACGGACCT 59.960 41.667 0.00 0.00 37.36 3.85
252 253 5.244402 TGTCAAAATAGAAGACACGGACCTA 59.756 40.000 0.00 0.00 37.36 3.08
253 254 6.070995 TGTCAAAATAGAAGACACGGACCTAT 60.071 38.462 0.00 0.00 37.36 2.57
254 255 6.255887 GTCAAAATAGAAGACACGGACCTATG 59.744 42.308 0.00 0.00 32.68 2.23
255 256 6.153851 TCAAAATAGAAGACACGGACCTATGA 59.846 38.462 0.00 0.00 0.00 2.15
256 257 6.540438 AAATAGAAGACACGGACCTATGAA 57.460 37.500 0.00 0.00 0.00 2.57
257 258 6.540438 AATAGAAGACACGGACCTATGAAA 57.460 37.500 0.00 0.00 0.00 2.69
258 259 4.457834 AGAAGACACGGACCTATGAAAG 57.542 45.455 0.00 0.00 0.00 2.62
259 260 3.833070 AGAAGACACGGACCTATGAAAGT 59.167 43.478 0.00 0.00 0.00 2.66
260 261 3.870633 AGACACGGACCTATGAAAGTC 57.129 47.619 0.00 0.00 0.00 3.01
261 262 3.432378 AGACACGGACCTATGAAAGTCT 58.568 45.455 0.00 0.00 33.39 3.24
262 263 3.833070 AGACACGGACCTATGAAAGTCTT 59.167 43.478 0.00 0.00 31.61 3.01
263 264 3.926616 ACACGGACCTATGAAAGTCTTG 58.073 45.455 0.00 0.00 33.39 3.02
264 265 3.576982 ACACGGACCTATGAAAGTCTTGA 59.423 43.478 0.00 0.00 33.39 3.02
265 266 4.039973 ACACGGACCTATGAAAGTCTTGAA 59.960 41.667 0.00 0.00 33.39 2.69
266 267 4.389077 CACGGACCTATGAAAGTCTTGAAC 59.611 45.833 0.00 0.00 33.39 3.18
267 268 3.933332 CGGACCTATGAAAGTCTTGAACC 59.067 47.826 0.00 0.00 33.39 3.62
268 269 4.562757 CGGACCTATGAAAGTCTTGAACCA 60.563 45.833 0.00 0.00 33.39 3.67
269 270 5.501156 GGACCTATGAAAGTCTTGAACCAT 58.499 41.667 0.00 0.00 33.39 3.55
270 271 5.355350 GGACCTATGAAAGTCTTGAACCATG 59.645 44.000 0.00 0.00 33.39 3.66
271 272 4.702131 ACCTATGAAAGTCTTGAACCATGC 59.298 41.667 0.00 0.00 0.00 4.06
272 273 4.946157 CCTATGAAAGTCTTGAACCATGCT 59.054 41.667 0.00 0.00 0.00 3.79
273 274 5.416952 CCTATGAAAGTCTTGAACCATGCTT 59.583 40.000 0.00 0.00 0.00 3.91
274 275 6.599244 CCTATGAAAGTCTTGAACCATGCTTA 59.401 38.462 0.00 0.00 0.00 3.09
275 276 7.284034 CCTATGAAAGTCTTGAACCATGCTTAT 59.716 37.037 0.00 0.00 0.00 1.73
276 277 6.899393 TGAAAGTCTTGAACCATGCTTATT 57.101 33.333 0.00 0.00 0.00 1.40
277 278 6.680810 TGAAAGTCTTGAACCATGCTTATTG 58.319 36.000 0.00 0.00 0.00 1.90
278 279 5.649782 AAGTCTTGAACCATGCTTATTGG 57.350 39.130 0.00 0.00 40.26 3.16
279 280 3.445096 AGTCTTGAACCATGCTTATTGGC 59.555 43.478 0.00 0.00 37.81 4.52
280 281 3.445096 GTCTTGAACCATGCTTATTGGCT 59.555 43.478 0.00 0.00 37.81 4.75
281 282 3.696051 TCTTGAACCATGCTTATTGGCTC 59.304 43.478 0.00 0.00 37.81 4.70
282 283 3.084536 TGAACCATGCTTATTGGCTCA 57.915 42.857 0.00 0.00 37.09 4.26
283 284 3.018856 TGAACCATGCTTATTGGCTCAG 58.981 45.455 0.00 0.00 35.08 3.35
284 285 2.062971 ACCATGCTTATTGGCTCAGG 57.937 50.000 0.00 0.00 37.81 3.86
285 286 1.565759 ACCATGCTTATTGGCTCAGGA 59.434 47.619 0.00 0.00 37.81 3.86
286 287 2.228059 CCATGCTTATTGGCTCAGGAG 58.772 52.381 0.00 0.00 0.00 3.69
315 316 2.147436 TTTTTCTCCCGTTGCAATGC 57.853 45.000 13.42 0.00 0.00 3.56
316 317 1.035923 TTTTCTCCCGTTGCAATGCA 58.964 45.000 13.42 2.72 36.47 3.96
317 318 0.313672 TTTCTCCCGTTGCAATGCAC 59.686 50.000 7.72 2.39 38.71 4.57
318 319 0.821301 TTCTCCCGTTGCAATGCACA 60.821 50.000 7.72 0.00 38.71 4.57
319 320 1.210931 CTCCCGTTGCAATGCACAG 59.789 57.895 7.72 4.64 38.71 3.66
320 321 2.203972 CTCCCGTTGCAATGCACAGG 62.204 60.000 7.72 14.17 38.71 4.00
321 322 2.431260 CCGTTGCAATGCACAGGC 60.431 61.111 7.72 0.00 38.71 4.85
370 371 4.098654 ACGAGCATTAGCATCAAGTCTAGT 59.901 41.667 0.00 0.00 45.49 2.57
372 373 6.015856 ACGAGCATTAGCATCAAGTCTAGTAT 60.016 38.462 0.00 0.00 45.49 2.12
385 386 7.331026 TCAAGTCTAGTATTTGAACCCTGATG 58.669 38.462 0.00 0.00 31.48 3.07
386 387 6.240549 AGTCTAGTATTTGAACCCTGATGG 57.759 41.667 0.00 0.00 41.37 3.51
404 405 1.258445 GGGCCGATCGAGGATACCAT 61.258 60.000 18.66 0.00 37.17 3.55
442 445 8.621286 CCATCTAACAATAGGTTATTGGTTCAC 58.379 37.037 12.07 0.00 43.19 3.18
453 456 1.338890 TTGGTTCACGTCCTCACCCA 61.339 55.000 0.00 0.00 0.00 4.51
467 470 5.068067 GTCCTCACCCAAATCTAGTCTAGTC 59.932 48.000 6.77 0.00 0.00 2.59
468 471 5.044030 TCCTCACCCAAATCTAGTCTAGTCT 60.044 44.000 6.77 0.00 0.00 3.24
469 472 6.159928 TCCTCACCCAAATCTAGTCTAGTCTA 59.840 42.308 6.77 0.00 0.00 2.59
470 473 6.488683 CCTCACCCAAATCTAGTCTAGTCTAG 59.511 46.154 15.49 15.49 38.83 2.43
471 474 6.971340 TCACCCAAATCTAGTCTAGTCTAGT 58.029 40.000 19.35 8.06 38.66 2.57
487 490 6.270156 AGTCTAGTTCTTTAAAGGAGTCCG 57.730 41.667 15.13 5.05 0.00 4.79
503 506 4.078363 AGTCCGAAAATAATGTGCAACG 57.922 40.909 0.00 0.00 42.39 4.10
508 511 5.813157 TCCGAAAATAATGTGCAACGATCTA 59.187 36.000 0.00 0.00 42.39 1.98
513 516 2.941453 ATGTGCAACGATCTAGACGT 57.059 45.000 12.60 12.60 45.89 4.34
519 522 2.667448 GCAACGATCTAGACGTGACACA 60.667 50.000 17.17 0.00 43.16 3.72
529 538 1.792949 GACGTGACACAACTTAGCAGG 59.207 52.381 6.37 0.00 0.00 4.85
562 571 3.815401 CGATCTGGCCCCAGTTAAATTAG 59.185 47.826 13.66 0.00 43.96 1.73
563 572 3.662759 TCTGGCCCCAGTTAAATTAGG 57.337 47.619 13.66 0.00 43.96 2.69
570 579 5.104402 GGCCCCAGTTAAATTAGGTAGTACA 60.104 44.000 2.06 0.00 0.00 2.90
576 585 7.383300 CCAGTTAAATTAGGTAGTACATACGCC 59.617 40.741 2.06 0.00 34.99 5.68
609 618 1.395608 GTGAACGGACGAGAGAGAGAG 59.604 57.143 0.00 0.00 0.00 3.20
610 619 1.275573 TGAACGGACGAGAGAGAGAGA 59.724 52.381 0.00 0.00 0.00 3.10
611 620 1.931172 GAACGGACGAGAGAGAGAGAG 59.069 57.143 0.00 0.00 0.00 3.20
612 621 1.187974 ACGGACGAGAGAGAGAGAGA 58.812 55.000 0.00 0.00 0.00 3.10
613 622 1.136305 ACGGACGAGAGAGAGAGAGAG 59.864 57.143 0.00 0.00 0.00 3.20
614 623 1.407618 CGGACGAGAGAGAGAGAGAGA 59.592 57.143 0.00 0.00 0.00 3.10
615 624 2.543861 CGGACGAGAGAGAGAGAGAGAG 60.544 59.091 0.00 0.00 0.00 3.20
616 625 2.693591 GGACGAGAGAGAGAGAGAGAGA 59.306 54.545 0.00 0.00 0.00 3.10
617 626 3.243569 GGACGAGAGAGAGAGAGAGAGAG 60.244 56.522 0.00 0.00 0.00 3.20
618 627 3.632333 ACGAGAGAGAGAGAGAGAGAGA 58.368 50.000 0.00 0.00 0.00 3.10
619 628 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
620 629 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
621 630 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
622 631 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
623 632 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
624 633 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
625 634 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
626 635 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
640 649 1.062581 AGAGAGATTCCTAGCCAGCCA 60.063 52.381 0.00 0.00 0.00 4.75
713 722 1.214373 CGCGCAACAAACCAAATGCT 61.214 50.000 8.75 0.00 36.67 3.79
714 723 0.232816 GCGCAACAAACCAAATGCTG 59.767 50.000 0.30 0.00 36.67 4.41
715 724 0.232816 CGCAACAAACCAAATGCTGC 59.767 50.000 0.00 0.00 36.72 5.25
755 764 3.627395 TCCAAGTGACGGCTGATATTT 57.373 42.857 0.00 0.00 0.00 1.40
756 765 3.270027 TCCAAGTGACGGCTGATATTTG 58.730 45.455 0.00 0.91 0.00 2.32
757 766 3.009723 CCAAGTGACGGCTGATATTTGT 58.990 45.455 0.00 0.00 0.00 2.83
758 767 3.063997 CCAAGTGACGGCTGATATTTGTC 59.936 47.826 0.00 0.00 0.00 3.18
759 768 2.906354 AGTGACGGCTGATATTTGTCC 58.094 47.619 0.00 0.00 0.00 4.02
762 771 2.128035 GACGGCTGATATTTGTCCGAG 58.872 52.381 0.00 0.00 42.43 4.63
763 772 1.202533 ACGGCTGATATTTGTCCGAGG 60.203 52.381 0.00 0.00 42.43 4.63
764 773 1.068588 CGGCTGATATTTGTCCGAGGA 59.931 52.381 0.00 0.00 42.43 3.71
766 775 2.139118 GCTGATATTTGTCCGAGGAGC 58.861 52.381 0.00 0.00 0.00 4.70
768 777 3.388308 CTGATATTTGTCCGAGGAGCAG 58.612 50.000 0.00 0.00 0.00 4.24
769 778 3.031013 TGATATTTGTCCGAGGAGCAGA 58.969 45.455 0.00 0.00 0.00 4.26
770 779 3.450817 TGATATTTGTCCGAGGAGCAGAA 59.549 43.478 0.00 0.00 0.00 3.02
771 780 2.393271 ATTTGTCCGAGGAGCAGAAG 57.607 50.000 0.00 0.00 0.00 2.85
772 781 1.338107 TTTGTCCGAGGAGCAGAAGA 58.662 50.000 0.00 0.00 0.00 2.87
773 782 0.603569 TTGTCCGAGGAGCAGAAGAC 59.396 55.000 0.00 0.00 0.00 3.01
774 783 0.539669 TGTCCGAGGAGCAGAAGACA 60.540 55.000 0.00 0.00 32.15 3.41
775 784 0.109039 GTCCGAGGAGCAGAAGACAC 60.109 60.000 0.00 0.00 0.00 3.67
776 785 0.539669 TCCGAGGAGCAGAAGACACA 60.540 55.000 0.00 0.00 0.00 3.72
777 786 0.389166 CCGAGGAGCAGAAGACACAC 60.389 60.000 0.00 0.00 0.00 3.82
778 787 0.730834 CGAGGAGCAGAAGACACACG 60.731 60.000 0.00 0.00 0.00 4.49
779 788 0.315568 GAGGAGCAGAAGACACACGT 59.684 55.000 0.00 0.00 0.00 4.49
780 789 1.540267 GAGGAGCAGAAGACACACGTA 59.460 52.381 0.00 0.00 0.00 3.57
875 896 0.968901 TCAGTAGTGGGTGGTAGGCG 60.969 60.000 0.00 0.00 0.00 5.52
892 913 1.616872 GCGTTCGCTTTGCCCAAATG 61.617 55.000 9.99 0.00 0.00 2.32
994 1024 1.228737 CCGAACCCCAACCACCATT 60.229 57.895 0.00 0.00 0.00 3.16
999 1029 0.041090 ACCCCAACCACCATTCATCC 59.959 55.000 0.00 0.00 0.00 3.51
1009 1039 1.900245 CCATTCATCCATGGCGATGA 58.100 50.000 10.66 9.55 45.39 2.92
1010 1040 1.538512 CCATTCATCCATGGCGATGAC 59.461 52.381 14.17 0.00 46.41 3.06
1164 1236 1.411612 GGCTACTACAACTACCGCCAT 59.588 52.381 0.00 0.00 36.16 4.40
1247 1330 2.963101 TCCAGTTTTCTCTTCCTGTCGA 59.037 45.455 0.00 0.00 0.00 4.20
1271 1402 0.108138 CCTGGGAAAGTAGTGGCTCG 60.108 60.000 0.00 0.00 0.00 5.03
1373 1534 1.065551 GCACCAAGTTGTCACTGAACC 59.934 52.381 1.45 0.00 31.60 3.62
1400 1612 2.902705 TAATACGGCTGGTGGTGATC 57.097 50.000 0.00 0.00 0.00 2.92
1460 1685 2.194597 GTGGCACCCTGTTGACCA 59.805 61.111 6.29 0.00 0.00 4.02
1504 1729 1.123077 AGTGTTGTCCTGTCAGCTGA 58.877 50.000 13.74 13.74 0.00 4.26
1520 1754 1.266718 GCTGACAGCTCTCTCTATCCG 59.733 57.143 20.41 0.00 38.45 4.18
1540 1774 2.358737 CGGGGCCTGTCTGTCAAC 60.359 66.667 3.48 0.00 0.00 3.18
1559 1794 9.239002 CTGTCAACGGTAGAAGAAATAGATAAG 57.761 37.037 0.00 0.00 0.00 1.73
1621 1856 3.984838 GCAATGGCCAAGTGTTTCA 57.015 47.368 10.96 0.00 0.00 2.69
1622 1857 2.237393 GCAATGGCCAAGTGTTTCAA 57.763 45.000 10.96 0.00 0.00 2.69
1623 1858 2.769893 GCAATGGCCAAGTGTTTCAAT 58.230 42.857 10.96 0.00 0.00 2.57
1624 1859 3.924144 GCAATGGCCAAGTGTTTCAATA 58.076 40.909 10.96 0.00 0.00 1.90
1625 1860 3.928375 GCAATGGCCAAGTGTTTCAATAG 59.072 43.478 10.96 0.00 0.00 1.73
1626 1861 3.874392 ATGGCCAAGTGTTTCAATAGC 57.126 42.857 10.96 0.00 0.00 2.97
1630 1865 5.750524 TGGCCAAGTGTTTCAATAGCTATA 58.249 37.500 0.61 0.00 0.00 1.31
1777 2017 5.340667 GCGTTTGTCTGCTAGAAAAAGAATG 59.659 40.000 0.00 0.00 32.44 2.67
1797 2038 4.155733 CGTATGTGGGCAGCGGGA 62.156 66.667 0.00 0.00 0.00 5.14
1856 2099 5.603170 CCATGCAACTGGGAAAATTCTAT 57.397 39.130 0.00 0.00 32.28 1.98
1870 2113 7.867445 GAAAATTCTATTTTTCCGCACAAGA 57.133 32.000 0.00 0.00 38.89 3.02
1912 2156 6.492836 TTCGCACAGAACAACCAATAATGGA 61.493 40.000 3.12 0.00 40.70 3.41
2408 2763 7.797121 AGATGTCCCCTTTCATATTTTGTTT 57.203 32.000 0.00 0.00 0.00 2.83
2409 2764 7.614494 AGATGTCCCCTTTCATATTTTGTTTG 58.386 34.615 0.00 0.00 0.00 2.93
2410 2765 6.985653 TGTCCCCTTTCATATTTTGTTTGA 57.014 33.333 0.00 0.00 0.00 2.69
2616 2981 4.063998 TGTCCTCGATCAATGAATGGAG 57.936 45.455 0.00 0.00 32.90 3.86
2641 3007 0.732571 GCGGATTGATTCCTTCGCAA 59.267 50.000 0.00 0.00 42.99 4.85
2885 3259 3.721625 TCGGAGAGAATTCGCACAG 57.278 52.632 11.94 6.22 0.00 3.66
3084 3765 5.222048 TGCACCTAGGTTTAGAAAATCCACT 60.222 40.000 13.15 0.00 0.00 4.00
3088 3769 6.500751 ACCTAGGTTTAGAAAATCCACTCTCA 59.499 38.462 9.21 0.00 0.00 3.27
3120 3801 6.674694 ATTCTTTTGTCTGCATAGCTGTAG 57.325 37.500 0.00 0.00 36.52 2.74
3131 3812 4.281941 TGCATAGCTGTAGGAATAGGTCAG 59.718 45.833 0.00 0.00 0.00 3.51
3222 4513 9.535878 GAATAGTTTGTTTTAATTTGTGGACCA 57.464 29.630 0.00 0.00 0.00 4.02
3264 4555 3.230134 GGATATTTGCCATGCCTACCAA 58.770 45.455 0.00 0.00 0.00 3.67
3419 4710 4.202461 GGTCCCTAAGGTAATCATGCATGA 60.202 45.833 30.47 30.47 41.70 3.07
3502 4832 7.759607 AGCTTACCTTATGGGATGATACAAAT 58.240 34.615 0.00 0.00 38.76 2.32
3507 4837 8.010733 ACCTTATGGGATGATACAAATTGTTG 57.989 34.615 3.17 0.00 38.46 3.33
3628 4958 6.017934 GCCTAAATTGCGATCAGTCTTTATGA 60.018 38.462 0.00 0.00 0.00 2.15
3629 4959 7.467267 GCCTAAATTGCGATCAGTCTTTATGAA 60.467 37.037 0.00 0.00 0.00 2.57
3634 4964 8.847444 ATTGCGATCAGTCTTTATGAAATTTC 57.153 30.769 11.41 11.41 0.00 2.17
3699 5038 6.862469 ACATCTTGATGGAATGAACCAATT 57.138 33.333 14.18 0.00 43.47 2.32
3719 5058 7.147620 ACCAATTTATTCCAATGATCATGCACT 60.148 33.333 9.46 0.00 0.00 4.40
4003 5368 8.598041 AGTATCTAAAACCAGTCAGAACAGATT 58.402 33.333 0.00 0.00 0.00 2.40
4090 5471 7.317390 TGGTTTTTCTGTTCTGGTAAAACTTC 58.683 34.615 0.00 0.00 38.25 3.01
4182 5563 2.091555 TGGAACCTACAAAAGCCTGGTT 60.092 45.455 0.00 0.00 42.85 3.67
4870 7139 8.730680 CAGTATGACTTGGTAAGTGCTTAAATT 58.269 33.333 0.00 0.00 43.03 1.82
4921 7223 3.815809 CAGTTCCTTCCCAACAACACTA 58.184 45.455 0.00 0.00 0.00 2.74
5707 8324 9.406113 GTACTGGAATAACGGGATATATACTCT 57.594 37.037 0.00 0.00 0.00 3.24
5713 8330 7.883391 ATAACGGGATATATACTCTGGACTG 57.117 40.000 0.00 0.00 0.00 3.51
5883 9089 9.045223 GTTGTGCATATGACTAATCTTATGTCA 57.955 33.333 6.97 0.00 41.66 3.58
5905 9111 1.165907 CCTTTCTTCAGGTGCGTGCA 61.166 55.000 0.00 0.00 0.00 4.57
6108 9314 3.375299 GGTCAAGCAACTTGGCTACTATG 59.625 47.826 11.34 0.00 44.44 2.23
6187 9420 7.011482 GTGCTTGAACGAACCTTAGATGAATAT 59.989 37.037 0.00 0.00 0.00 1.28
6231 9464 3.603965 TTCCCACCACACCAAATTACT 57.396 42.857 0.00 0.00 0.00 2.24
6254 9487 0.391597 CCGTGTGCCCCGACTTATAT 59.608 55.000 0.00 0.00 0.00 0.86
6266 9499 6.517864 GCCCCGACTTATATTGTACATACACT 60.518 42.308 0.00 0.00 35.64 3.55
6432 9793 6.224665 TGCTATTTTCCCATCCATTTGAAG 57.775 37.500 0.00 0.00 0.00 3.02
6455 9816 0.171231 TGCAGCTACGTAGACAGCAG 59.829 55.000 26.53 11.26 40.46 4.24
6476 9839 8.773645 CAGCAGGACATTAAATGAAACGATATA 58.226 33.333 0.00 0.00 0.00 0.86
6477 9840 8.774586 AGCAGGACATTAAATGAAACGATATAC 58.225 33.333 0.00 0.00 0.00 1.47
6515 9878 4.333926 GTGATTATGTGCTGAAGGAGGTTC 59.666 45.833 0.00 0.00 35.48 3.62
7066 10429 6.763355 ACATATATATGTAGCATAGCCCTGC 58.237 40.000 23.90 0.00 44.54 4.85
7067 10430 4.696479 ATATATGTAGCATAGCCCTGCC 57.304 45.455 4.58 0.00 43.33 4.85
7068 10431 1.728323 TATGTAGCATAGCCCTGCCA 58.272 50.000 4.58 0.00 43.33 4.92
7069 10432 0.109342 ATGTAGCATAGCCCTGCCAC 59.891 55.000 4.58 2.52 43.33 5.01
7070 10433 1.595382 GTAGCATAGCCCTGCCACG 60.595 63.158 4.58 0.00 43.33 4.94
7071 10434 2.063979 TAGCATAGCCCTGCCACGT 61.064 57.895 4.58 0.00 43.33 4.49
7072 10435 2.310327 TAGCATAGCCCTGCCACGTG 62.310 60.000 9.08 9.08 43.33 4.49
7073 10436 2.514592 CATAGCCCTGCCACGTGG 60.515 66.667 30.66 30.66 38.53 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.333528 TGGTTTTCCATGATGTATTCTTAGC 57.666 36.000 0.00 0.00 46.22 3.09
16 17 3.819337 GAGTGGACCTAAAGTGGTTTTCC 59.181 47.826 0.00 0.00 41.00 3.13
17 18 4.275196 GTGAGTGGACCTAAAGTGGTTTTC 59.725 45.833 0.00 0.00 41.00 2.29
18 19 4.204799 GTGAGTGGACCTAAAGTGGTTTT 58.795 43.478 0.00 0.00 41.00 2.43
19 20 3.434596 GGTGAGTGGACCTAAAGTGGTTT 60.435 47.826 0.00 0.00 41.00 3.27
20 21 2.105993 GGTGAGTGGACCTAAAGTGGTT 59.894 50.000 0.00 0.00 41.00 3.67
21 22 1.697982 GGTGAGTGGACCTAAAGTGGT 59.302 52.381 0.00 0.00 44.10 4.16
22 23 1.978580 AGGTGAGTGGACCTAAAGTGG 59.021 52.381 0.00 0.00 45.09 4.00
23 24 3.403038 CAAGGTGAGTGGACCTAAAGTG 58.597 50.000 0.00 0.00 46.29 3.16
24 25 2.372172 CCAAGGTGAGTGGACCTAAAGT 59.628 50.000 0.00 0.00 46.29 2.66
25 26 2.290323 CCCAAGGTGAGTGGACCTAAAG 60.290 54.545 0.00 0.00 46.29 1.85
26 27 1.702957 CCCAAGGTGAGTGGACCTAAA 59.297 52.381 0.00 0.00 46.29 1.85
27 28 1.132657 TCCCAAGGTGAGTGGACCTAA 60.133 52.381 0.00 0.00 46.29 2.69
28 29 0.490017 TCCCAAGGTGAGTGGACCTA 59.510 55.000 0.00 0.00 46.29 3.08
30 31 1.375326 GTCCCAAGGTGAGTGGACC 59.625 63.158 0.00 0.00 41.14 4.46
31 32 0.472471 TTGTCCCAAGGTGAGTGGAC 59.528 55.000 0.00 0.00 45.99 4.02
32 33 1.217916 TTTGTCCCAAGGTGAGTGGA 58.782 50.000 0.00 0.00 38.54 4.02
33 34 2.065899 TTTTGTCCCAAGGTGAGTGG 57.934 50.000 0.00 0.00 35.77 4.00
34 35 3.221771 TGATTTTGTCCCAAGGTGAGTG 58.778 45.455 0.00 0.00 0.00 3.51
35 36 3.593442 TGATTTTGTCCCAAGGTGAGT 57.407 42.857 0.00 0.00 0.00 3.41
36 37 4.523943 TCAATGATTTTGTCCCAAGGTGAG 59.476 41.667 0.00 0.00 0.00 3.51
37 38 4.478203 TCAATGATTTTGTCCCAAGGTGA 58.522 39.130 0.00 0.00 0.00 4.02
38 39 4.870123 TCAATGATTTTGTCCCAAGGTG 57.130 40.909 0.00 0.00 0.00 4.00
39 40 6.153340 CAGTATCAATGATTTTGTCCCAAGGT 59.847 38.462 0.00 0.00 0.00 3.50
40 41 6.567050 CAGTATCAATGATTTTGTCCCAAGG 58.433 40.000 0.00 0.00 0.00 3.61
41 42 6.038356 GCAGTATCAATGATTTTGTCCCAAG 58.962 40.000 0.00 0.00 0.00 3.61
42 43 5.392919 CGCAGTATCAATGATTTTGTCCCAA 60.393 40.000 0.00 0.00 0.00 4.12
43 44 4.096231 CGCAGTATCAATGATTTTGTCCCA 59.904 41.667 0.00 0.00 0.00 4.37
44 45 4.096382 ACGCAGTATCAATGATTTTGTCCC 59.904 41.667 0.00 0.00 41.94 4.46
45 46 5.030295 CACGCAGTATCAATGATTTTGTCC 58.970 41.667 0.00 0.00 41.61 4.02
46 47 5.030295 CCACGCAGTATCAATGATTTTGTC 58.970 41.667 0.00 0.00 41.61 3.18
47 48 4.458989 ACCACGCAGTATCAATGATTTTGT 59.541 37.500 0.00 0.00 41.61 2.83
48 49 4.985413 ACCACGCAGTATCAATGATTTTG 58.015 39.130 0.00 1.83 41.61 2.44
49 50 5.643379 AACCACGCAGTATCAATGATTTT 57.357 34.783 0.00 0.00 41.61 1.82
50 51 5.643379 AAACCACGCAGTATCAATGATTT 57.357 34.783 0.00 0.00 41.61 2.17
51 52 5.048083 ACAAAACCACGCAGTATCAATGATT 60.048 36.000 0.00 0.00 41.61 2.57
52 53 4.458989 ACAAAACCACGCAGTATCAATGAT 59.541 37.500 0.00 0.00 41.61 2.45
53 54 3.818210 ACAAAACCACGCAGTATCAATGA 59.182 39.130 0.00 0.00 41.61 2.57
54 55 3.913763 CACAAAACCACGCAGTATCAATG 59.086 43.478 0.00 0.00 41.61 2.82
55 56 3.057596 CCACAAAACCACGCAGTATCAAT 60.058 43.478 0.00 0.00 41.61 2.57
56 57 2.292016 CCACAAAACCACGCAGTATCAA 59.708 45.455 0.00 0.00 41.61 2.57
57 58 1.876799 CCACAAAACCACGCAGTATCA 59.123 47.619 0.00 0.00 41.61 2.15
58 59 2.147958 TCCACAAAACCACGCAGTATC 58.852 47.619 0.00 0.00 41.61 2.24
59 60 2.264005 TCCACAAAACCACGCAGTAT 57.736 45.000 0.00 0.00 41.61 2.12
60 61 2.264005 ATCCACAAAACCACGCAGTA 57.736 45.000 0.00 0.00 41.61 2.74
62 63 2.507339 AAATCCACAAAACCACGCAG 57.493 45.000 0.00 0.00 0.00 5.18
63 64 2.428890 AGAAAATCCACAAAACCACGCA 59.571 40.909 0.00 0.00 0.00 5.24
64 65 3.092334 AGAAAATCCACAAAACCACGC 57.908 42.857 0.00 0.00 0.00 5.34
65 66 5.008217 TGAGTAGAAAATCCACAAAACCACG 59.992 40.000 0.00 0.00 0.00 4.94
66 67 6.385649 TGAGTAGAAAATCCACAAAACCAC 57.614 37.500 0.00 0.00 0.00 4.16
67 68 6.831353 TCTTGAGTAGAAAATCCACAAAACCA 59.169 34.615 0.00 0.00 0.00 3.67
68 69 7.139392 GTCTTGAGTAGAAAATCCACAAAACC 58.861 38.462 0.00 0.00 33.81 3.27
69 70 7.703328 TGTCTTGAGTAGAAAATCCACAAAAC 58.297 34.615 0.00 0.00 33.81 2.43
70 71 7.013274 CCTGTCTTGAGTAGAAAATCCACAAAA 59.987 37.037 0.00 0.00 33.81 2.44
71 72 6.486657 CCTGTCTTGAGTAGAAAATCCACAAA 59.513 38.462 0.00 0.00 33.81 2.83
72 73 5.997746 CCTGTCTTGAGTAGAAAATCCACAA 59.002 40.000 0.00 0.00 33.81 3.33
73 74 5.071788 ACCTGTCTTGAGTAGAAAATCCACA 59.928 40.000 0.00 0.00 33.81 4.17
74 75 5.552178 ACCTGTCTTGAGTAGAAAATCCAC 58.448 41.667 0.00 0.00 33.81 4.02
75 76 5.825593 ACCTGTCTTGAGTAGAAAATCCA 57.174 39.130 0.00 0.00 33.81 3.41
76 77 7.387643 AGTTACCTGTCTTGAGTAGAAAATCC 58.612 38.462 0.00 0.00 33.81 3.01
77 78 9.575783 CTAGTTACCTGTCTTGAGTAGAAAATC 57.424 37.037 0.00 0.00 33.81 2.17
78 79 9.310449 TCTAGTTACCTGTCTTGAGTAGAAAAT 57.690 33.333 0.00 0.00 33.81 1.82
79 80 8.701908 TCTAGTTACCTGTCTTGAGTAGAAAA 57.298 34.615 0.00 0.00 33.81 2.29
80 81 8.701908 TTCTAGTTACCTGTCTTGAGTAGAAA 57.298 34.615 0.00 0.00 33.81 2.52
81 82 7.943447 ACTTCTAGTTACCTGTCTTGAGTAGAA 59.057 37.037 0.00 0.00 33.81 2.10
82 83 7.460071 ACTTCTAGTTACCTGTCTTGAGTAGA 58.540 38.462 0.00 0.00 0.00 2.59
83 84 7.690952 ACTTCTAGTTACCTGTCTTGAGTAG 57.309 40.000 0.00 0.00 0.00 2.57
84 85 9.750783 AATACTTCTAGTTACCTGTCTTGAGTA 57.249 33.333 0.00 0.00 0.00 2.59
85 86 8.653036 AATACTTCTAGTTACCTGTCTTGAGT 57.347 34.615 0.00 0.00 0.00 3.41
86 87 9.930693 AAAATACTTCTAGTTACCTGTCTTGAG 57.069 33.333 0.00 0.00 0.00 3.02
99 100 8.957466 GGCCATGTCTTTAAAAATACTTCTAGT 58.043 33.333 0.00 0.00 0.00 2.57
100 101 8.956426 TGGCCATGTCTTTAAAAATACTTCTAG 58.044 33.333 0.00 0.00 0.00 2.43
101 102 8.871629 TGGCCATGTCTTTAAAAATACTTCTA 57.128 30.769 0.00 0.00 0.00 2.10
102 103 7.775053 TGGCCATGTCTTTAAAAATACTTCT 57.225 32.000 0.00 0.00 0.00 2.85
103 104 9.435688 AATTGGCCATGTCTTTAAAAATACTTC 57.564 29.630 6.09 0.00 0.00 3.01
104 105 9.435688 GAATTGGCCATGTCTTTAAAAATACTT 57.564 29.630 6.09 0.00 0.00 2.24
105 106 8.592809 TGAATTGGCCATGTCTTTAAAAATACT 58.407 29.630 6.09 0.00 0.00 2.12
106 107 8.770438 TGAATTGGCCATGTCTTTAAAAATAC 57.230 30.769 6.09 0.00 0.00 1.89
107 108 9.956640 ATTGAATTGGCCATGTCTTTAAAAATA 57.043 25.926 6.09 0.00 0.00 1.40
108 109 8.866970 ATTGAATTGGCCATGTCTTTAAAAAT 57.133 26.923 6.09 0.00 0.00 1.82
109 110 8.688747 AATTGAATTGGCCATGTCTTTAAAAA 57.311 26.923 6.09 0.00 0.00 1.94
110 111 8.688747 AAATTGAATTGGCCATGTCTTTAAAA 57.311 26.923 6.09 0.00 0.00 1.52
111 112 8.688747 AAAATTGAATTGGCCATGTCTTTAAA 57.311 26.923 6.09 0.00 0.00 1.52
112 113 8.688747 AAAAATTGAATTGGCCATGTCTTTAA 57.311 26.923 6.09 1.93 0.00 1.52
113 114 7.935755 TGAAAAATTGAATTGGCCATGTCTTTA 59.064 29.630 6.09 0.00 0.00 1.85
114 115 6.771749 TGAAAAATTGAATTGGCCATGTCTTT 59.228 30.769 6.09 3.67 0.00 2.52
115 116 6.205270 GTGAAAAATTGAATTGGCCATGTCTT 59.795 34.615 6.09 0.00 0.00 3.01
116 117 5.702209 GTGAAAAATTGAATTGGCCATGTCT 59.298 36.000 6.09 0.00 0.00 3.41
117 118 5.469421 TGTGAAAAATTGAATTGGCCATGTC 59.531 36.000 6.09 7.87 0.00 3.06
118 119 5.239087 GTGTGAAAAATTGAATTGGCCATGT 59.761 36.000 6.09 0.00 0.00 3.21
119 120 5.470777 AGTGTGAAAAATTGAATTGGCCATG 59.529 36.000 6.09 0.00 0.00 3.66
120 121 5.623169 AGTGTGAAAAATTGAATTGGCCAT 58.377 33.333 6.09 0.00 0.00 4.40
121 122 5.033589 AGTGTGAAAAATTGAATTGGCCA 57.966 34.783 0.00 0.00 0.00 5.36
122 123 7.671495 AATAGTGTGAAAAATTGAATTGGCC 57.329 32.000 0.00 0.00 0.00 5.36
123 124 9.597999 GAAAATAGTGTGAAAAATTGAATTGGC 57.402 29.630 0.00 0.00 0.00 4.52
151 152 8.682710 CCAGCACCTTATAAGCATTTTAAAGTA 58.317 33.333 6.99 0.00 0.00 2.24
152 153 7.396055 TCCAGCACCTTATAAGCATTTTAAAGT 59.604 33.333 6.99 0.00 0.00 2.66
153 154 7.771183 TCCAGCACCTTATAAGCATTTTAAAG 58.229 34.615 6.99 0.00 0.00 1.85
154 155 7.710676 TCCAGCACCTTATAAGCATTTTAAA 57.289 32.000 6.99 0.00 0.00 1.52
155 156 7.177568 TGTTCCAGCACCTTATAAGCATTTTAA 59.822 33.333 6.99 0.00 0.00 1.52
156 157 6.661377 TGTTCCAGCACCTTATAAGCATTTTA 59.339 34.615 6.99 0.00 0.00 1.52
157 158 5.480073 TGTTCCAGCACCTTATAAGCATTTT 59.520 36.000 6.99 0.00 0.00 1.82
158 159 5.016173 TGTTCCAGCACCTTATAAGCATTT 58.984 37.500 6.99 0.00 0.00 2.32
159 160 4.599041 TGTTCCAGCACCTTATAAGCATT 58.401 39.130 6.99 0.00 0.00 3.56
160 161 4.235079 TGTTCCAGCACCTTATAAGCAT 57.765 40.909 6.99 0.00 0.00 3.79
161 162 3.712016 TGTTCCAGCACCTTATAAGCA 57.288 42.857 6.99 0.00 0.00 3.91
162 163 4.217550 TGTTTGTTCCAGCACCTTATAAGC 59.782 41.667 6.99 0.00 0.00 3.09
163 164 5.957842 TGTTTGTTCCAGCACCTTATAAG 57.042 39.130 5.43 5.43 0.00 1.73
164 165 5.010213 GGTTGTTTGTTCCAGCACCTTATAA 59.990 40.000 0.00 0.00 0.00 0.98
165 166 4.521256 GGTTGTTTGTTCCAGCACCTTATA 59.479 41.667 0.00 0.00 0.00 0.98
166 167 3.320826 GGTTGTTTGTTCCAGCACCTTAT 59.679 43.478 0.00 0.00 0.00 1.73
167 168 2.691011 GGTTGTTTGTTCCAGCACCTTA 59.309 45.455 0.00 0.00 0.00 2.69
168 169 1.480545 GGTTGTTTGTTCCAGCACCTT 59.519 47.619 0.00 0.00 0.00 3.50
169 170 1.111277 GGTTGTTTGTTCCAGCACCT 58.889 50.000 0.00 0.00 0.00 4.00
170 171 0.820871 TGGTTGTTTGTTCCAGCACC 59.179 50.000 0.00 0.00 0.00 5.01
171 172 1.203523 TGTGGTTGTTTGTTCCAGCAC 59.796 47.619 0.00 0.00 37.99 4.40
172 173 1.203523 GTGTGGTTGTTTGTTCCAGCA 59.796 47.619 0.00 0.00 31.54 4.41
173 174 1.203523 TGTGTGGTTGTTTGTTCCAGC 59.796 47.619 0.00 0.00 31.54 4.85
174 175 3.584406 TTGTGTGGTTGTTTGTTCCAG 57.416 42.857 0.00 0.00 31.54 3.86
175 176 3.511540 TGATTGTGTGGTTGTTTGTTCCA 59.488 39.130 0.00 0.00 0.00 3.53
176 177 4.116747 TGATTGTGTGGTTGTTTGTTCC 57.883 40.909 0.00 0.00 0.00 3.62
177 178 5.108517 ACATGATTGTGTGGTTGTTTGTTC 58.891 37.500 0.00 0.00 33.85 3.18
178 179 5.083533 ACATGATTGTGTGGTTGTTTGTT 57.916 34.783 0.00 0.00 33.85 2.83
179 180 4.734398 ACATGATTGTGTGGTTGTTTGT 57.266 36.364 0.00 0.00 33.85 2.83
180 181 6.038985 TGTTACATGATTGTGTGGTTGTTTG 58.961 36.000 0.00 0.00 36.53 2.93
181 182 6.214191 TGTTACATGATTGTGTGGTTGTTT 57.786 33.333 0.00 0.00 36.53 2.83
182 183 5.843673 TGTTACATGATTGTGTGGTTGTT 57.156 34.783 0.00 0.00 36.53 2.83
183 184 7.701539 ATATGTTACATGATTGTGTGGTTGT 57.298 32.000 8.26 0.00 36.53 3.32
184 185 7.009448 GCAATATGTTACATGATTGTGTGGTTG 59.991 37.037 8.26 0.00 36.53 3.77
185 186 7.035004 GCAATATGTTACATGATTGTGTGGTT 58.965 34.615 8.26 0.00 36.53 3.67
186 187 6.152492 TGCAATATGTTACATGATTGTGTGGT 59.848 34.615 8.26 0.00 36.53 4.16
187 188 6.562518 TGCAATATGTTACATGATTGTGTGG 58.437 36.000 8.26 0.00 36.53 4.17
188 189 9.733219 TTATGCAATATGTTACATGATTGTGTG 57.267 29.630 8.26 0.00 36.53 3.82
195 196 9.733219 CACACATTTATGCAATATGTTACATGA 57.267 29.630 8.26 0.00 30.45 3.07
196 197 8.970293 CCACACATTTATGCAATATGTTACATG 58.030 33.333 8.26 0.00 30.45 3.21
197 198 7.652909 GCCACACATTTATGCAATATGTTACAT 59.347 33.333 2.58 2.58 30.45 2.29
198 199 6.977502 GCCACACATTTATGCAATATGTTACA 59.022 34.615 8.47 0.00 30.45 2.41
199 200 6.142161 CGCCACACATTTATGCAATATGTTAC 59.858 38.462 8.47 0.82 30.45 2.50
200 201 6.205071 CGCCACACATTTATGCAATATGTTA 58.795 36.000 8.47 0.00 30.45 2.41
201 202 5.042593 CGCCACACATTTATGCAATATGTT 58.957 37.500 8.47 0.89 30.45 2.71
202 203 4.609947 CGCCACACATTTATGCAATATGT 58.390 39.130 0.00 0.00 32.98 2.29
203 204 3.426191 GCGCCACACATTTATGCAATATG 59.574 43.478 0.00 0.00 0.00 1.78
204 205 3.552684 GGCGCCACACATTTATGCAATAT 60.553 43.478 24.80 0.00 0.00 1.28
205 206 2.223688 GGCGCCACACATTTATGCAATA 60.224 45.455 24.80 0.00 0.00 1.90
206 207 1.471327 GGCGCCACACATTTATGCAAT 60.471 47.619 24.80 0.00 0.00 3.56
207 208 0.108898 GGCGCCACACATTTATGCAA 60.109 50.000 24.80 0.00 0.00 4.08
208 209 1.510383 GGCGCCACACATTTATGCA 59.490 52.632 24.80 0.00 0.00 3.96
209 210 1.586042 CGGCGCCACACATTTATGC 60.586 57.895 28.98 0.00 0.00 3.14
210 211 0.523125 CACGGCGCCACACATTTATG 60.523 55.000 28.98 8.28 0.00 1.90
211 212 0.958382 ACACGGCGCCACACATTTAT 60.958 50.000 28.98 0.00 0.00 1.40
212 213 1.570347 GACACGGCGCCACACATTTA 61.570 55.000 28.98 0.00 0.00 1.40
213 214 2.903547 GACACGGCGCCACACATTT 61.904 57.895 28.98 1.83 0.00 2.32
214 215 3.353836 GACACGGCGCCACACATT 61.354 61.111 28.98 3.09 0.00 2.71
215 216 4.617520 TGACACGGCGCCACACAT 62.618 61.111 28.98 6.28 0.00 3.21
216 217 4.840005 TTGACACGGCGCCACACA 62.840 61.111 28.98 17.21 0.00 3.72
217 218 2.400896 ATTTTGACACGGCGCCACAC 62.401 55.000 28.98 14.69 0.00 3.82
218 219 0.885150 TATTTTGACACGGCGCCACA 60.885 50.000 28.98 17.22 0.00 4.17
219 220 0.179200 CTATTTTGACACGGCGCCAC 60.179 55.000 28.98 14.70 0.00 5.01
220 221 0.320858 TCTATTTTGACACGGCGCCA 60.321 50.000 28.98 2.40 0.00 5.69
221 222 0.800012 TTCTATTTTGACACGGCGCC 59.200 50.000 19.07 19.07 0.00 6.53
222 223 1.730064 TCTTCTATTTTGACACGGCGC 59.270 47.619 6.90 0.00 0.00 6.53
223 224 2.734606 TGTCTTCTATTTTGACACGGCG 59.265 45.455 4.80 4.80 36.03 6.46
224 225 4.066710 GTGTCTTCTATTTTGACACGGC 57.933 45.455 9.24 0.00 46.82 5.68
228 229 4.039973 AGGTCCGTGTCTTCTATTTTGACA 59.960 41.667 0.00 0.00 38.24 3.58
229 230 4.566987 AGGTCCGTGTCTTCTATTTTGAC 58.433 43.478 0.00 0.00 0.00 3.18
230 231 4.884668 AGGTCCGTGTCTTCTATTTTGA 57.115 40.909 0.00 0.00 0.00 2.69
231 232 6.338146 TCATAGGTCCGTGTCTTCTATTTTG 58.662 40.000 0.00 0.00 0.00 2.44
232 233 6.540438 TCATAGGTCCGTGTCTTCTATTTT 57.460 37.500 0.00 0.00 0.00 1.82
233 234 6.540438 TTCATAGGTCCGTGTCTTCTATTT 57.460 37.500 0.00 0.00 0.00 1.40
234 235 6.154706 ACTTTCATAGGTCCGTGTCTTCTATT 59.845 38.462 0.00 0.00 0.00 1.73
235 236 5.657302 ACTTTCATAGGTCCGTGTCTTCTAT 59.343 40.000 0.00 0.00 0.00 1.98
236 237 5.014858 ACTTTCATAGGTCCGTGTCTTCTA 58.985 41.667 0.00 0.00 0.00 2.10
237 238 3.833070 ACTTTCATAGGTCCGTGTCTTCT 59.167 43.478 0.00 0.00 0.00 2.85
238 239 4.082136 AGACTTTCATAGGTCCGTGTCTTC 60.082 45.833 0.00 0.00 33.39 2.87
239 240 3.833070 AGACTTTCATAGGTCCGTGTCTT 59.167 43.478 0.00 0.00 33.39 3.01
240 241 3.432378 AGACTTTCATAGGTCCGTGTCT 58.568 45.455 0.00 0.00 33.39 3.41
241 242 3.870633 AGACTTTCATAGGTCCGTGTC 57.129 47.619 0.00 0.00 33.39 3.67
242 243 3.576982 TCAAGACTTTCATAGGTCCGTGT 59.423 43.478 0.00 0.00 33.39 4.49
243 244 4.188247 TCAAGACTTTCATAGGTCCGTG 57.812 45.455 0.00 0.00 33.39 4.94
244 245 4.562963 GGTTCAAGACTTTCATAGGTCCGT 60.563 45.833 0.00 0.00 33.39 4.69
245 246 3.933332 GGTTCAAGACTTTCATAGGTCCG 59.067 47.826 0.00 0.00 33.39 4.79
246 247 4.906618 TGGTTCAAGACTTTCATAGGTCC 58.093 43.478 0.00 0.00 33.39 4.46
247 248 5.163713 GCATGGTTCAAGACTTTCATAGGTC 60.164 44.000 0.00 0.00 0.00 3.85
248 249 4.702131 GCATGGTTCAAGACTTTCATAGGT 59.298 41.667 0.00 0.00 0.00 3.08
249 250 4.946157 AGCATGGTTCAAGACTTTCATAGG 59.054 41.667 0.00 0.00 0.00 2.57
250 251 6.506500 AAGCATGGTTCAAGACTTTCATAG 57.493 37.500 3.82 0.00 0.00 2.23
251 252 8.461222 CAATAAGCATGGTTCAAGACTTTCATA 58.539 33.333 14.50 0.00 0.00 2.15
252 253 7.318141 CAATAAGCATGGTTCAAGACTTTCAT 58.682 34.615 14.50 0.00 0.00 2.57
253 254 6.294675 CCAATAAGCATGGTTCAAGACTTTCA 60.295 38.462 14.50 0.00 33.08 2.69
254 255 6.095377 CCAATAAGCATGGTTCAAGACTTTC 58.905 40.000 14.50 0.00 33.08 2.62
255 256 5.567423 GCCAATAAGCATGGTTCAAGACTTT 60.567 40.000 14.50 0.00 40.23 2.66
256 257 4.082026 GCCAATAAGCATGGTTCAAGACTT 60.082 41.667 14.50 0.00 40.23 3.01
257 258 3.445096 GCCAATAAGCATGGTTCAAGACT 59.555 43.478 14.50 0.00 40.23 3.24
258 259 3.445096 AGCCAATAAGCATGGTTCAAGAC 59.555 43.478 14.50 2.75 40.23 3.01
259 260 3.696051 GAGCCAATAAGCATGGTTCAAGA 59.304 43.478 14.50 0.00 44.75 3.02
260 261 4.037858 GAGCCAATAAGCATGGTTCAAG 57.962 45.455 14.50 4.89 44.75 3.02
263 264 2.360165 CCTGAGCCAATAAGCATGGTTC 59.640 50.000 14.50 0.00 45.37 3.62
264 265 2.025037 TCCTGAGCCAATAAGCATGGTT 60.025 45.455 15.47 15.47 40.23 3.67
265 266 1.565759 TCCTGAGCCAATAAGCATGGT 59.434 47.619 0.00 0.00 40.23 3.55
266 267 2.228059 CTCCTGAGCCAATAAGCATGG 58.772 52.381 0.00 0.00 41.08 3.66
296 297 1.410517 TGCATTGCAACGGGAGAAAAA 59.589 42.857 9.33 0.00 34.76 1.94
297 298 1.035923 TGCATTGCAACGGGAGAAAA 58.964 45.000 9.33 0.00 34.76 2.29
298 299 0.313672 GTGCATTGCAACGGGAGAAA 59.686 50.000 13.94 0.00 41.47 2.52
299 300 0.821301 TGTGCATTGCAACGGGAGAA 60.821 50.000 13.94 0.00 41.47 2.87
300 301 1.228094 TGTGCATTGCAACGGGAGA 60.228 52.632 13.94 0.00 41.47 3.71
301 302 1.210931 CTGTGCATTGCAACGGGAG 59.789 57.895 13.94 1.09 41.47 4.30
302 303 2.267351 CCTGTGCATTGCAACGGGA 61.267 57.895 23.63 0.00 41.47 5.14
303 304 2.259204 CCTGTGCATTGCAACGGG 59.741 61.111 13.94 16.81 41.47 5.28
304 305 2.431260 GCCTGTGCATTGCAACGG 60.431 61.111 13.94 16.68 41.47 4.44
305 306 2.335729 TGCCTGTGCATTGCAACG 59.664 55.556 13.94 7.16 44.23 4.10
314 315 0.883833 ACTAGCAAACATGCCTGTGC 59.116 50.000 0.00 0.00 35.22 4.57
315 316 2.153645 TGACTAGCAAACATGCCTGTG 58.846 47.619 0.00 0.00 35.22 3.66
316 317 2.224621 ACTGACTAGCAAACATGCCTGT 60.225 45.455 0.00 0.00 37.12 4.00
317 318 2.430465 ACTGACTAGCAAACATGCCTG 58.570 47.619 0.00 0.00 34.90 4.85
318 319 2.867109 ACTGACTAGCAAACATGCCT 57.133 45.000 0.00 0.00 34.90 4.75
319 320 5.371115 TTTAACTGACTAGCAAACATGCC 57.629 39.130 0.00 0.00 34.90 4.40
341 342 7.066284 AGACTTGATGCTAATGCTCGTATTTTT 59.934 33.333 0.00 0.00 40.48 1.94
355 356 7.125811 AGGGTTCAAATACTAGACTTGATGCTA 59.874 37.037 0.00 0.00 0.00 3.49
359 360 7.496346 TCAGGGTTCAAATACTAGACTTGAT 57.504 36.000 0.00 0.00 0.00 2.57
385 386 1.258445 ATGGTATCCTCGATCGGCCC 61.258 60.000 16.41 6.94 0.00 5.80
386 387 0.608640 AATGGTATCCTCGATCGGCC 59.391 55.000 16.41 8.71 0.00 6.13
387 388 3.802948 ATAATGGTATCCTCGATCGGC 57.197 47.619 16.41 0.00 0.00 5.54
388 389 5.584253 AGAATAATGGTATCCTCGATCGG 57.416 43.478 16.41 5.93 0.00 4.18
389 390 6.857956 AGAAGAATAATGGTATCCTCGATCG 58.142 40.000 9.36 9.36 0.00 3.69
395 396 9.398921 AGATGGTTAGAAGAATAATGGTATCCT 57.601 33.333 0.00 0.00 0.00 3.24
435 438 1.338890 TTGGGTGAGGACGTGAACCA 61.339 55.000 0.00 0.00 34.18 3.67
442 445 2.761208 AGACTAGATTTGGGTGAGGACG 59.239 50.000 0.00 0.00 0.00 4.79
467 470 7.958053 TTTTCGGACTCCTTTAAAGAACTAG 57.042 36.000 16.98 10.21 0.00 2.57
469 472 8.913487 TTATTTTCGGACTCCTTTAAAGAACT 57.087 30.769 16.98 0.00 0.00 3.01
470 473 9.556030 CATTATTTTCGGACTCCTTTAAAGAAC 57.444 33.333 16.98 4.88 0.00 3.01
471 474 9.292195 ACATTATTTTCGGACTCCTTTAAAGAA 57.708 29.630 16.98 0.00 0.00 2.52
487 490 6.841286 CGTCTAGATCGTTGCACATTATTTTC 59.159 38.462 0.00 0.00 0.00 2.29
503 506 4.794246 GCTAAGTTGTGTCACGTCTAGATC 59.206 45.833 0.00 0.00 0.00 2.75
508 511 2.545952 CCTGCTAAGTTGTGTCACGTCT 60.546 50.000 0.00 0.00 0.00 4.18
513 516 3.040147 GCTACCTGCTAAGTTGTGTCA 57.960 47.619 0.00 0.00 38.95 3.58
529 538 0.319125 GCCAGATCGCCTACAGCTAC 60.319 60.000 0.00 0.00 40.39 3.58
562 571 1.024271 TCACCGGCGTATGTACTACC 58.976 55.000 6.01 0.00 0.00 3.18
563 572 1.268743 GGTCACCGGCGTATGTACTAC 60.269 57.143 6.01 0.00 0.00 2.73
609 618 5.559148 AGGAATCTCTCTCTCTCTCTCTC 57.441 47.826 0.00 0.00 0.00 3.20
610 619 5.012561 GCTAGGAATCTCTCTCTCTCTCTCT 59.987 48.000 0.00 0.00 0.00 3.10
611 620 5.241662 GCTAGGAATCTCTCTCTCTCTCTC 58.758 50.000 0.00 0.00 0.00 3.20
612 621 4.042187 GGCTAGGAATCTCTCTCTCTCTCT 59.958 50.000 0.00 0.00 0.00 3.10
613 622 4.202461 TGGCTAGGAATCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
614 623 3.721575 TGGCTAGGAATCTCTCTCTCTCT 59.278 47.826 0.00 0.00 0.00 3.10
615 624 4.074970 CTGGCTAGGAATCTCTCTCTCTC 58.925 52.174 0.00 0.00 0.00 3.20
616 625 3.751893 GCTGGCTAGGAATCTCTCTCTCT 60.752 52.174 0.00 0.00 0.00 3.10
617 626 2.558359 GCTGGCTAGGAATCTCTCTCTC 59.442 54.545 0.00 0.00 0.00 3.20
618 627 2.597455 GCTGGCTAGGAATCTCTCTCT 58.403 52.381 0.00 0.00 0.00 3.10
619 628 1.618343 GGCTGGCTAGGAATCTCTCTC 59.382 57.143 0.00 0.00 0.00 3.20
620 629 1.062581 TGGCTGGCTAGGAATCTCTCT 60.063 52.381 0.00 0.00 0.00 3.10
621 630 1.418334 TGGCTGGCTAGGAATCTCTC 58.582 55.000 0.00 0.00 0.00 3.20
622 631 2.115337 ATGGCTGGCTAGGAATCTCT 57.885 50.000 0.00 0.00 0.00 3.10
623 632 2.235898 CCTATGGCTGGCTAGGAATCTC 59.764 54.545 16.41 0.00 37.31 2.75
624 633 2.264455 CCTATGGCTGGCTAGGAATCT 58.736 52.381 16.41 0.00 37.31 2.40
625 634 1.280421 CCCTATGGCTGGCTAGGAATC 59.720 57.143 20.49 0.00 37.31 2.52
626 635 1.366319 CCCTATGGCTGGCTAGGAAT 58.634 55.000 20.49 3.11 37.31 3.01
672 681 2.347731 GTGTTAGCAGCCTAGACCAAC 58.652 52.381 0.00 0.00 0.00 3.77
740 749 1.593006 CGGACAAATATCAGCCGTCAC 59.407 52.381 0.00 0.00 37.35 3.67
755 764 0.539669 TGTCTTCTGCTCCTCGGACA 60.540 55.000 0.00 0.00 0.00 4.02
756 765 0.109039 GTGTCTTCTGCTCCTCGGAC 60.109 60.000 0.00 0.00 0.00 4.79
757 766 0.539669 TGTGTCTTCTGCTCCTCGGA 60.540 55.000 0.00 0.00 0.00 4.55
758 767 0.389166 GTGTGTCTTCTGCTCCTCGG 60.389 60.000 0.00 0.00 0.00 4.63
759 768 0.730834 CGTGTGTCTTCTGCTCCTCG 60.731 60.000 0.00 0.00 0.00 4.63
762 771 1.983972 CTACGTGTGTCTTCTGCTCC 58.016 55.000 0.00 0.00 0.00 4.70
763 772 1.335964 TGCTACGTGTGTCTTCTGCTC 60.336 52.381 0.00 0.00 0.00 4.26
764 773 0.673985 TGCTACGTGTGTCTTCTGCT 59.326 50.000 0.00 0.00 0.00 4.24
766 775 1.000163 ACCTGCTACGTGTGTCTTCTG 60.000 52.381 0.00 0.00 0.00 3.02
768 777 1.699343 GACCTGCTACGTGTGTCTTC 58.301 55.000 0.00 0.00 0.00 2.87
769 778 0.039437 CGACCTGCTACGTGTGTCTT 60.039 55.000 0.00 0.00 0.00 3.01
770 779 1.579932 CGACCTGCTACGTGTGTCT 59.420 57.895 0.00 0.00 0.00 3.41
771 780 1.443872 CCGACCTGCTACGTGTGTC 60.444 63.158 0.00 0.00 0.00 3.67
772 781 2.649034 CCGACCTGCTACGTGTGT 59.351 61.111 0.00 0.00 0.00 3.72
773 782 2.809601 GCCGACCTGCTACGTGTG 60.810 66.667 0.00 0.00 0.00 3.82
774 783 2.765250 CTTGCCGACCTGCTACGTGT 62.765 60.000 0.00 0.00 0.00 4.49
775 784 2.048597 TTGCCGACCTGCTACGTG 60.049 61.111 0.00 0.00 0.00 4.49
776 785 1.812686 TTCTTGCCGACCTGCTACGT 61.813 55.000 0.00 0.00 0.00 3.57
777 786 0.460284 ATTCTTGCCGACCTGCTACG 60.460 55.000 0.00 0.00 0.00 3.51
778 787 1.291132 GATTCTTGCCGACCTGCTAC 58.709 55.000 0.00 0.00 0.00 3.58
779 788 0.179111 CGATTCTTGCCGACCTGCTA 60.179 55.000 0.00 0.00 0.00 3.49
780 789 1.448540 CGATTCTTGCCGACCTGCT 60.449 57.895 0.00 0.00 0.00 4.24
853 866 1.762957 CCTACCACCCACTACTGATGG 59.237 57.143 0.00 0.00 36.94 3.51
875 896 0.599728 TGCATTTGGGCAAAGCGAAC 60.600 50.000 0.00 0.00 41.65 3.95
892 913 9.692325 AGGGGATATATCTTTTCTTATTGATGC 57.308 33.333 12.42 0.00 0.00 3.91
1164 1236 2.613739 GATAGAGCGTGCGCACCTGA 62.614 60.000 33.23 19.83 44.88 3.86
1247 1330 3.591977 AGCCACTACTTTCCCAGGTTAAT 59.408 43.478 0.00 0.00 0.00 1.40
1271 1402 3.794028 CGTAGCTCTTGAACAGCATAGAC 59.206 47.826 0.00 0.00 39.56 2.59
1373 1534 4.202223 ACCACCAGCCGTATTATAGTTCAG 60.202 45.833 0.00 0.00 0.00 3.02
1400 1612 1.620323 TGATGAGCCGGTGATCCTATG 59.380 52.381 1.90 0.00 0.00 2.23
1414 1626 5.159925 CAACATACGGAGCTCTATGATGAG 58.840 45.833 22.98 12.27 37.16 2.90
1460 1685 3.066291 TGCTATGTGGACCGTTTGATT 57.934 42.857 0.00 0.00 0.00 2.57
1486 1711 1.221414 GTCAGCTGACAGGACAACAC 58.779 55.000 36.23 10.32 44.18 3.32
1504 1729 1.028905 GCACGGATAGAGAGAGCTGT 58.971 55.000 0.00 0.00 0.00 4.40
1540 1774 6.421202 GCACCACTTATCTATTTCTTCTACCG 59.579 42.308 0.00 0.00 0.00 4.02
1559 1794 0.243636 CCCGGATTCTTTTGCACCAC 59.756 55.000 0.73 0.00 0.00 4.16
1694 1932 5.697178 TCTTTTCGACATTGAACAACGGATA 59.303 36.000 0.00 0.00 0.00 2.59
1777 2017 2.461110 CCGCTGCCCACATACGAAC 61.461 63.158 0.00 0.00 0.00 3.95
1856 2099 4.377839 TTTGTCATCTTGTGCGGAAAAA 57.622 36.364 0.00 0.00 0.00 1.94
1870 2113 3.617263 GCGAAACTCCGACTATTTGTCAT 59.383 43.478 0.00 0.00 45.60 3.06
1912 2156 6.777580 ACAGAAACATAGAAAAATGGGTCAGT 59.222 34.615 0.00 0.00 0.00 3.41
2314 2651 9.584839 GAAAACATGAACATTACTTGAATTTGC 57.415 29.630 0.00 0.00 0.00 3.68
2343 2691 7.286775 ACATTTTCCTAGAACACCAGCTTTTTA 59.713 33.333 0.00 0.00 0.00 1.52
2350 2703 6.039270 TCACAAACATTTTCCTAGAACACCAG 59.961 38.462 0.00 0.00 0.00 4.00
2641 3007 2.806608 TAGCTTCTCGGTTTCGTTGT 57.193 45.000 0.00 0.00 37.69 3.32
2745 3115 3.572539 ATATGCCCGTGCGTTGCG 61.573 61.111 0.00 0.00 41.78 4.85
2783 3153 4.717778 TCCCTCCATTCAATCGTTAACCTA 59.282 41.667 0.00 0.00 0.00 3.08
2792 3162 3.019564 CACACCTTCCCTCCATTCAATC 58.980 50.000 0.00 0.00 0.00 2.67
2803 3173 1.603739 GACTTGGGCACACCTTCCC 60.604 63.158 0.00 0.00 42.93 3.97
2879 3253 3.505293 TCTCCAGAGATATGATCTGTGCG 59.495 47.826 7.85 3.09 46.15 5.34
2885 3259 6.101332 GCTGATTGTCTCCAGAGATATGATC 58.899 44.000 0.00 0.70 39.97 2.92
2926 3300 5.118990 CCACAGTAATGATGTCGGAGAAAT 58.881 41.667 0.00 0.00 37.04 2.17
3084 3765 9.683069 GCAGACAAAAGAATTAGAATTTTGAGA 57.317 29.630 14.52 0.00 43.37 3.27
3107 3788 4.281941 TGACCTATTCCTACAGCTATGCAG 59.718 45.833 0.00 0.00 0.00 4.41
3120 3801 5.106673 CGGAACACTTTTTCTGACCTATTCC 60.107 44.000 0.00 0.00 34.23 3.01
3131 3812 3.394313 ACGAACACGGAACACTTTTTC 57.606 42.857 0.00 0.00 0.00 2.29
3255 4546 5.200483 CCCTTCTTCAATATTTGGTAGGCA 58.800 41.667 0.00 0.00 0.00 4.75
3264 4555 5.779241 TGAGACCACCCTTCTTCAATATT 57.221 39.130 0.00 0.00 0.00 1.28
3470 4800 6.212791 TCATCCCATAAGGTAAGCTATACCAC 59.787 42.308 20.32 2.10 39.99 4.16
3479 4809 9.354673 ACAATTTGTATCATCCCATAAGGTAAG 57.645 33.333 0.00 0.00 36.75 2.34
3502 4832 4.478206 TTTTTCTGCAACCATCCAACAA 57.522 36.364 0.00 0.00 0.00 2.83
3507 4837 4.255833 TCACATTTTTCTGCAACCATCC 57.744 40.909 0.00 0.00 0.00 3.51
3628 4958 5.366477 ACATCAAAGACCAACTGGGAAATTT 59.634 36.000 0.00 0.00 41.15 1.82
3629 4959 4.901250 ACATCAAAGACCAACTGGGAAATT 59.099 37.500 0.00 0.00 41.15 1.82
3634 4964 2.862541 TGACATCAAAGACCAACTGGG 58.137 47.619 0.00 0.00 44.81 4.45
3657 4996 9.926751 CAAGATGTTGACATTATCACATAGAAC 57.073 33.333 0.00 0.00 36.92 3.01
3699 5038 5.698104 AGGAGTGCATGATCATTGGAATAA 58.302 37.500 5.16 0.00 0.00 1.40
3719 5058 7.092444 ACAGAAAATTGTGGATACTGGATAGGA 60.092 37.037 0.00 0.00 37.61 2.94
4059 5439 4.709397 ACCAGAACAGAAAAACCATGACAA 59.291 37.500 0.00 0.00 0.00 3.18
4090 5471 1.280457 GGATAGGTAGGCATCCCTGG 58.720 60.000 0.00 0.00 42.90 4.45
4182 5563 1.659022 TAACCAAAGGACGATGGGGA 58.341 50.000 0.00 0.00 41.17 4.81
4921 7223 5.774690 TCTTGACCTGCTCAACCATTAATTT 59.225 36.000 0.00 0.00 33.65 1.82
5257 7612 6.963796 ACTACATGCAGAACAAAAGAAAGAG 58.036 36.000 0.00 0.00 0.00 2.85
5707 8324 7.724490 ATCGATCCTGAATAATATCAGTCCA 57.276 36.000 0.00 0.00 44.32 4.02
5883 9089 0.693049 ACGCACCTGAAGAAAGGGAT 59.307 50.000 0.00 0.00 42.11 3.85
5905 9111 3.507233 ACGAGCCACATTGTGATTCAAAT 59.493 39.130 18.33 1.90 39.62 2.32
6187 9420 8.696043 AATAGCTGAAGTAATGGCATAATTCA 57.304 30.769 16.36 16.36 37.49 2.57
6231 9464 3.998672 GTCGGGGCACACGGAAGA 61.999 66.667 0.00 0.00 0.00 2.87
6254 9487 9.128404 CACCTTCCTACTATAGTGTATGTACAA 57.872 37.037 15.90 0.00 38.04 2.41
6432 9793 1.227002 GTCTACGTAGCTGCAGGGC 60.227 63.158 18.00 2.13 0.00 5.19
6515 9878 1.654954 CCGGTAGTGGAGACTCACCG 61.655 65.000 19.95 19.95 42.67 4.94
6687 10050 2.358267 GCGTATATGTAGCTAGGCCGAT 59.642 50.000 0.00 0.00 0.00 4.18
6816 10179 3.866582 GGCCTGCGGACCTATGCT 61.867 66.667 0.00 0.00 0.00 3.79
7048 10411 2.269023 TGGCAGGGCTATGCTACATAT 58.731 47.619 13.46 0.00 45.75 1.78
7049 10412 1.728323 TGGCAGGGCTATGCTACATA 58.272 50.000 13.46 0.00 45.75 2.29
7050 10413 2.543569 TGGCAGGGCTATGCTACAT 58.456 52.632 13.46 0.00 45.75 2.29
7051 10414 4.064973 TGGCAGGGCTATGCTACA 57.935 55.556 13.46 3.45 45.75 2.74
7053 10416 2.063979 ACGTGGCAGGGCTATGCTA 61.064 57.895 12.33 6.25 45.75 3.49
7054 10417 3.402681 ACGTGGCAGGGCTATGCT 61.403 61.111 12.33 0.00 45.75 3.79
7055 10418 3.204827 CACGTGGCAGGGCTATGC 61.205 66.667 7.95 6.68 45.74 3.14
7056 10419 2.514592 CCACGTGGCAGGGCTATG 60.515 66.667 24.02 0.45 32.30 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.