Multiple sequence alignment - TraesCS3A01G527900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G527900 chr3A 100.000 4525 0 0 3855 8379 742324558 742320034 0.000000e+00 8357
1 TraesCS3A01G527900 chr3A 100.000 3526 0 0 1 3526 742328412 742324887 0.000000e+00 6512
2 TraesCS3A01G527900 chr3A 87.572 2245 217 32 6144 8354 742239370 742237154 0.000000e+00 2543
3 TraesCS3A01G527900 chr3A 83.233 1831 223 40 818 2590 742229214 742227410 0.000000e+00 1604
4 TraesCS3A01G527900 chr3A 83.557 1563 219 27 1038 2582 742243503 742241961 0.000000e+00 1428
5 TraesCS3A01G527900 chr3A 88.865 934 81 12 7189 8100 742212469 742211537 0.000000e+00 1127
6 TraesCS3A01G527900 chr3A 87.858 873 79 13 6330 7191 742224073 742223217 0.000000e+00 1000
7 TraesCS3A01G527900 chr3A 81.287 1010 155 21 5119 6096 742240568 742239561 0.000000e+00 787
8 TraesCS3A01G527900 chr3A 80.416 914 154 17 5131 6028 742226956 742226052 0.000000e+00 673
9 TraesCS3A01G527900 chr3A 78.155 412 74 14 2597 3002 742241894 742241493 1.810000e-61 248
10 TraesCS3A01G527900 chr3B 90.125 2552 149 46 818 3339 819285456 819282978 0.000000e+00 3221
11 TraesCS3A01G527900 chr3B 85.066 3281 356 67 5167 8354 819366201 819362962 0.000000e+00 3221
12 TraesCS3A01G527900 chr3B 85.246 2840 315 50 5181 7966 819505493 819502704 0.000000e+00 2828
13 TraesCS3A01G527900 chr3B 88.359 1950 202 14 283 2218 819369350 819367412 0.000000e+00 2320
14 TraesCS3A01G527900 chr3B 87.174 2035 196 25 6359 8353 819280650 819278641 0.000000e+00 2252
15 TraesCS3A01G527900 chr3B 89.390 1574 141 16 6252 7806 819188172 819186606 0.000000e+00 1958
16 TraesCS3A01G527900 chr3B 87.327 1736 184 23 6244 7959 819630730 819629011 0.000000e+00 1954
17 TraesCS3A01G527900 chr3B 88.808 1376 130 16 4962 6319 819282022 819280653 0.000000e+00 1666
18 TraesCS3A01G527900 chr3B 84.418 1675 230 18 922 2582 819507928 819506271 0.000000e+00 1618
19 TraesCS3A01G527900 chr3B 85.185 1566 213 13 954 2513 819635277 819633725 0.000000e+00 1589
20 TraesCS3A01G527900 chr3B 80.178 1912 299 55 1205 3086 819192543 819190682 0.000000e+00 1358
21 TraesCS3A01G527900 chr3B 91.260 881 67 4 6589 7464 818334104 818334979 0.000000e+00 1192
22 TraesCS3A01G527900 chr3B 81.095 804 133 14 5356 6147 819189061 819188265 7.140000e-175 625
23 TraesCS3A01G527900 chr3B 94.495 327 14 3 4445 4769 819282480 819282156 1.260000e-137 501
24 TraesCS3A01G527900 chr3B 86.415 265 27 3 4091 4346 819282886 819282622 1.780000e-71 281
25 TraesCS3A01G527900 chr3B 89.177 231 18 1 1 224 819369582 819369352 1.780000e-71 281
26 TraesCS3A01G527900 chr3B 92.949 156 10 1 4785 4939 819282170 819282015 8.460000e-55 226
27 TraesCS3A01G527900 chr3D 90.419 2004 162 16 6268 8248 608925581 608923585 0.000000e+00 2610
28 TraesCS3A01G527900 chr3D 85.158 1745 204 23 873 2590 608932155 608930439 0.000000e+00 1736
29 TraesCS3A01G527900 chr3D 95.161 1054 38 4 1 1043 608933482 608932431 0.000000e+00 1652
30 TraesCS3A01G527900 chr3D 93.058 1066 48 6 1 1043 608972015 608970953 0.000000e+00 1535
31 TraesCS3A01G527900 chr3D 90.329 486 41 5 1056 1539 608968726 608968245 4.270000e-177 632
32 TraesCS3A01G527900 chr6B 80.088 909 168 12 6715 7616 73442206 73441304 0.000000e+00 664
33 TraesCS3A01G527900 chr5A 83.264 239 31 5 3113 3342 19548889 19549127 2.370000e-50 211
34 TraesCS3A01G527900 chr4D 82.412 199 23 4 3138 3326 506217938 506217742 6.730000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G527900 chr3A 742320034 742328412 8378 True 7434.500000 8357 100.000000 1 8379 2 chr3A.!!$R4 8378
1 TraesCS3A01G527900 chr3A 742237154 742243503 6349 True 1251.500000 2543 82.642750 1038 8354 4 chr3A.!!$R3 7316
2 TraesCS3A01G527900 chr3A 742211537 742212469 932 True 1127.000000 1127 88.865000 7189 8100 1 chr3A.!!$R1 911
3 TraesCS3A01G527900 chr3A 742223217 742229214 5997 True 1092.333333 1604 83.835667 818 7191 3 chr3A.!!$R2 6373
4 TraesCS3A01G527900 chr3B 819502704 819507928 5224 True 2223.000000 2828 84.832000 922 7966 2 chr3B.!!$R4 7044
5 TraesCS3A01G527900 chr3B 819362962 819369582 6620 True 1940.666667 3221 87.534000 1 8354 3 chr3B.!!$R3 8353
6 TraesCS3A01G527900 chr3B 819629011 819635277 6266 True 1771.500000 1954 86.256000 954 7959 2 chr3B.!!$R5 7005
7 TraesCS3A01G527900 chr3B 819278641 819285456 6815 True 1357.833333 3221 89.994333 818 8353 6 chr3B.!!$R2 7535
8 TraesCS3A01G527900 chr3B 819186606 819192543 5937 True 1313.666667 1958 83.554333 1205 7806 3 chr3B.!!$R1 6601
9 TraesCS3A01G527900 chr3B 818334104 818334979 875 False 1192.000000 1192 91.260000 6589 7464 1 chr3B.!!$F1 875
10 TraesCS3A01G527900 chr3D 608923585 608925581 1996 True 2610.000000 2610 90.419000 6268 8248 1 chr3D.!!$R1 1980
11 TraesCS3A01G527900 chr3D 608930439 608933482 3043 True 1694.000000 1736 90.159500 1 2590 2 chr3D.!!$R2 2589
12 TraesCS3A01G527900 chr3D 608968245 608972015 3770 True 1083.500000 1535 91.693500 1 1539 2 chr3D.!!$R3 1538
13 TraesCS3A01G527900 chr6B 73441304 73442206 902 True 664.000000 664 80.088000 6715 7616 1 chr6B.!!$R1 901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 1027 0.107508 CCATCACCGCAACTCATCCT 60.108 55.0 0.00 0.0 0.00 3.24 F
1120 3873 0.329596 AGATGCCCTTGGTTCTCACC 59.670 55.0 0.00 0.0 44.56 4.02 F
1349 4116 0.530431 CGGCGATGATGATGTCACCA 60.530 55.0 0.00 0.0 40.28 4.17 F
3166 7468 0.035176 CGTTTACGGGAAGTTGGGGA 59.965 55.0 0.00 0.0 35.37 4.81 F
3190 7493 0.037447 GAAGGCCTCCAACAGCTCTT 59.963 55.0 5.23 0.0 0.00 2.85 F
3482 7812 0.177141 TACATGAGGCCACCGCTTAC 59.823 55.0 5.01 0.0 34.44 2.34 F
4901 9357 0.107116 TGTGTTAAACCACCACGGCT 60.107 50.0 0.00 0.0 39.03 5.52 F
5445 11206 0.036294 GACCCCAGCCACTCAACTAC 60.036 60.0 0.00 0.0 0.00 2.73 F
5831 11601 0.470833 GGAGATAGCAGGGCAGGAGA 60.471 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 4942 0.664761 CCTTGGTAGCCATCATTGCG 59.335 55.000 0.00 0.0 31.53 4.85 R
2196 4975 2.224113 CCATACCTTTGCATCCATTGGC 60.224 50.000 0.00 0.0 0.00 4.52 R
3345 7659 0.036952 TAGTTGTCAGCAGCAGCCTC 60.037 55.000 0.00 0.0 43.56 4.70 R
4151 8481 0.107831 GGGCCCGCATATTAGTGACA 59.892 55.000 5.69 0.0 0.00 3.58 R
4430 8847 0.109153 TCAGTGATGCTGTTGCCTGT 59.891 50.000 0.00 0.0 45.23 4.00 R
5346 11076 0.899720 GACGTGGATGGGGTACTCAA 59.100 55.000 0.00 0.0 0.00 3.02 R
6210 14251 0.193574 AACAGAAGGAGGAGGGTGGA 59.806 55.000 0.00 0.0 0.00 4.02 R
6686 14817 1.800586 TGTCTCAACATCTGCGCTTTC 59.199 47.619 9.73 0.0 0.00 2.62 R
7493 15631 2.245159 TGCGGATCTAGAATTGCTGG 57.755 50.000 12.73 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 156 5.246203 CGGGAGGGATATATTGAGAAAGACA 59.754 44.000 0.00 0.00 0.00 3.41
167 175 5.081032 AGACACTAGCTCTAGGTGAGTTTT 58.919 41.667 13.40 0.00 44.41 2.43
175 183 2.158827 TCTAGGTGAGTTTTGCTGTGCA 60.159 45.455 0.00 0.00 36.47 4.57
244 252 3.117813 ACCACACCCAGCTTTTACAACTA 60.118 43.478 0.00 0.00 0.00 2.24
475 483 0.608308 GGTTGGAGGTGCCCTTACAC 60.608 60.000 0.00 0.00 39.94 2.90
535 544 0.457851 GTGACTGGAGAGCGCATACT 59.542 55.000 11.47 5.73 0.00 2.12
602 611 3.270812 AGTAACCCTATTTCCCAACCCA 58.729 45.455 0.00 0.00 0.00 4.51
604 613 0.330267 ACCCTATTTCCCAACCCACG 59.670 55.000 0.00 0.00 0.00 4.94
679 690 2.612115 CCCAGCCTCAGGTCCCTT 60.612 66.667 0.00 0.00 0.00 3.95
792 829 1.739929 CGATGGCGCACACAACCTA 60.740 57.895 10.83 0.00 0.00 3.08
933 979 1.136110 TCATGCGTATGTGGTCGTCAT 59.864 47.619 13.39 0.00 35.73 3.06
970 1027 0.107508 CCATCACCGCAACTCATCCT 60.108 55.000 0.00 0.00 0.00 3.24
1090 3842 2.169352 AGATGGAGAGGACATTTGACCG 59.831 50.000 0.00 0.00 35.05 4.79
1120 3873 0.329596 AGATGCCCTTGGTTCTCACC 59.670 55.000 0.00 0.00 44.56 4.02
1129 3882 1.348064 TGGTTCTCACCTGTCGGAAT 58.652 50.000 0.00 0.00 44.61 3.01
1134 3888 3.226346 TCTCACCTGTCGGAATTTACG 57.774 47.619 0.00 0.00 0.00 3.18
1135 3889 2.559668 TCTCACCTGTCGGAATTTACGT 59.440 45.455 0.12 0.00 0.00 3.57
1142 3896 5.759763 ACCTGTCGGAATTTACGTTTTTACT 59.240 36.000 0.00 0.00 0.00 2.24
1143 3897 6.075280 CCTGTCGGAATTTACGTTTTTACTG 58.925 40.000 0.00 0.00 0.00 2.74
1298 4065 1.135831 TCAATGGCGCACATAACAACG 60.136 47.619 10.83 0.00 39.40 4.10
1307 4074 3.006940 GCACATAACAACGATCTTGGGA 58.993 45.455 0.00 0.00 0.00 4.37
1349 4116 0.530431 CGGCGATGATGATGTCACCA 60.530 55.000 0.00 0.00 40.28 4.17
1428 4195 2.749044 CCTGCGGCAACATGAGCT 60.749 61.111 3.44 0.00 0.00 4.09
1505 4272 1.582968 CTGCAACCGCTCAAGCAAT 59.417 52.632 2.50 0.00 42.21 3.56
1789 4560 2.359214 GTGATAGACTCTCCGATGTGCA 59.641 50.000 0.00 0.00 0.00 4.57
1870 4641 3.129502 CGACCCTGCGGACGTAGA 61.130 66.667 11.34 0.00 41.59 2.59
2163 4942 6.391537 GGTAAGAGAGGCTACATATGCTTAC 58.608 44.000 1.58 9.30 37.05 2.34
2233 5020 9.840427 CAAAGGTATGGTCTTTGTTAATAGTTG 57.160 33.333 8.02 0.00 43.42 3.16
2285 5073 5.582689 AACTTTGGAGGTTTCTCTTTGTG 57.417 39.130 0.00 0.00 39.86 3.33
2353 5163 6.010219 AGTGCAATGAACAGTACCCTAAAAT 58.990 36.000 0.00 0.00 0.00 1.82
2548 5479 9.171877 GATGAACAAGAAAGAACAGATCCTATT 57.828 33.333 0.00 0.00 0.00 1.73
2653 5688 8.635765 TTAGAGAACAAATGCAGGACTAAAAT 57.364 30.769 0.00 0.00 0.00 1.82
2700 5739 5.235401 ACACAAAACAAACAAAAGGTCACAC 59.765 36.000 0.00 0.00 0.00 3.82
2767 5953 6.496338 AGGCGGACTTAAACAAGAAAATAG 57.504 37.500 0.00 0.00 0.00 1.73
2808 5995 5.710613 TTTTTCACTCCAATTTCGCAAAC 57.289 34.783 0.00 0.00 0.00 2.93
2809 5996 2.679355 TCACTCCAATTTCGCAAACG 57.321 45.000 0.00 0.00 42.01 3.60
2874 6068 4.829492 AGACTTCCCTCCAAAACATCAAAG 59.171 41.667 0.00 0.00 0.00 2.77
2988 6643 4.460948 AAGCCAAACCAATTGAGCATAG 57.539 40.909 7.12 0.00 41.85 2.23
3014 7308 2.505628 TTGCAGCAAATCAGCGAAAA 57.494 40.000 4.99 0.00 40.15 2.29
3015 7309 2.728690 TGCAGCAAATCAGCGAAAAT 57.271 40.000 0.00 0.00 40.15 1.82
3016 7310 2.598589 TGCAGCAAATCAGCGAAAATC 58.401 42.857 0.00 0.00 40.15 2.17
3021 7315 5.333568 GCAGCAAATCAGCGAAAATCTTTTT 60.334 36.000 0.00 0.00 40.15 1.94
3114 7416 5.345741 ACGAATTTTGCATCATAACAGCAAC 59.654 36.000 0.00 0.00 46.69 4.17
3116 7418 6.237384 CGAATTTTGCATCATAACAGCAACTC 60.237 38.462 0.00 0.00 46.69 3.01
3117 7419 4.439305 TTTGCATCATAACAGCAACTCC 57.561 40.909 0.00 0.00 46.69 3.85
3118 7420 3.070476 TGCATCATAACAGCAACTCCA 57.930 42.857 0.00 0.00 34.97 3.86
3119 7421 3.419943 TGCATCATAACAGCAACTCCAA 58.580 40.909 0.00 0.00 34.97 3.53
3120 7422 3.191162 TGCATCATAACAGCAACTCCAAC 59.809 43.478 0.00 0.00 34.97 3.77
3121 7423 3.191162 GCATCATAACAGCAACTCCAACA 59.809 43.478 0.00 0.00 0.00 3.33
3123 7425 2.813754 TCATAACAGCAACTCCAACAGC 59.186 45.455 0.00 0.00 0.00 4.40
3124 7426 2.638480 TAACAGCAACTCCAACAGCT 57.362 45.000 0.00 0.00 37.95 4.24
3125 7427 1.312815 AACAGCAACTCCAACAGCTC 58.687 50.000 0.00 0.00 34.61 4.09
3126 7428 0.536006 ACAGCAACTCCAACAGCTCC 60.536 55.000 0.00 0.00 34.61 4.70
3127 7429 0.250640 CAGCAACTCCAACAGCTCCT 60.251 55.000 0.00 0.00 34.61 3.69
3128 7430 1.002430 CAGCAACTCCAACAGCTCCTA 59.998 52.381 0.00 0.00 34.61 2.94
3129 7431 1.912043 AGCAACTCCAACAGCTCCTAT 59.088 47.619 0.00 0.00 30.05 2.57
3130 7432 3.107601 AGCAACTCCAACAGCTCCTATA 58.892 45.455 0.00 0.00 30.05 1.31
3131 7433 3.713764 AGCAACTCCAACAGCTCCTATAT 59.286 43.478 0.00 0.00 30.05 0.86
3132 7434 4.061596 GCAACTCCAACAGCTCCTATATC 58.938 47.826 0.00 0.00 0.00 1.63
3133 7435 4.202305 GCAACTCCAACAGCTCCTATATCT 60.202 45.833 0.00 0.00 0.00 1.98
3134 7436 5.537188 CAACTCCAACAGCTCCTATATCTC 58.463 45.833 0.00 0.00 0.00 2.75
3135 7437 4.809193 ACTCCAACAGCTCCTATATCTCA 58.191 43.478 0.00 0.00 0.00 3.27
3166 7468 0.035176 CGTTTACGGGAAGTTGGGGA 59.965 55.000 0.00 0.00 35.37 4.81
3171 7474 1.699730 ACGGGAAGTTGGGGAAAAAG 58.300 50.000 0.00 0.00 0.00 2.27
3177 7480 1.717032 AGTTGGGGAAAAAGAAGGCC 58.283 50.000 0.00 0.00 0.00 5.19
3189 7492 0.839853 AGAAGGCCTCCAACAGCTCT 60.840 55.000 5.23 0.00 0.00 4.09
3190 7493 0.037447 GAAGGCCTCCAACAGCTCTT 59.963 55.000 5.23 0.00 0.00 2.85
3191 7494 1.279271 GAAGGCCTCCAACAGCTCTTA 59.721 52.381 5.23 0.00 0.00 2.10
3192 7495 1.362224 AGGCCTCCAACAGCTCTTAA 58.638 50.000 0.00 0.00 0.00 1.85
3193 7496 1.280421 AGGCCTCCAACAGCTCTTAAG 59.720 52.381 0.00 0.00 0.00 1.85
3221 7535 1.838077 CGGATCCCCTAGAAACACCTT 59.162 52.381 6.06 0.00 0.00 3.50
3222 7536 3.036091 CGGATCCCCTAGAAACACCTTA 58.964 50.000 6.06 0.00 0.00 2.69
3225 7539 4.658901 GGATCCCCTAGAAACACCTTATCA 59.341 45.833 0.00 0.00 0.00 2.15
3234 7548 6.139679 AGAAACACCTTATCAATCCTCCAA 57.860 37.500 0.00 0.00 0.00 3.53
3241 7555 6.884295 CACCTTATCAATCCTCCAAGTTTACA 59.116 38.462 0.00 0.00 0.00 2.41
3281 7595 6.154363 CCATATAATTTTGGCGGGTGGATAAT 59.846 38.462 0.00 0.00 0.00 1.28
3291 7605 1.947456 GGGTGGATAATCGCCTGAAAC 59.053 52.381 0.00 0.00 37.46 2.78
3296 7610 3.938963 TGGATAATCGCCTGAAACTTCAC 59.061 43.478 0.00 0.00 32.90 3.18
3300 7614 0.944311 TCGCCTGAAACTTCACGAGC 60.944 55.000 0.00 0.00 32.89 5.03
3308 7622 1.222115 AACTTCACGAGCAGAACGCC 61.222 55.000 0.00 0.00 44.04 5.68
3345 7659 4.368808 CCGAAACGCCGTGCACTG 62.369 66.667 16.19 9.93 0.00 3.66
3346 7660 3.334751 CGAAACGCCGTGCACTGA 61.335 61.111 16.19 0.00 0.00 3.41
3354 7668 3.420606 CGTGCACTGAGGCTGCTG 61.421 66.667 16.19 0.00 35.53 4.41
3355 7669 3.735029 GTGCACTGAGGCTGCTGC 61.735 66.667 10.32 7.10 35.53 5.25
3356 7670 3.949980 TGCACTGAGGCTGCTGCT 61.950 61.111 15.64 1.41 39.59 4.24
3357 7671 3.432588 GCACTGAGGCTGCTGCTG 61.433 66.667 15.64 6.48 39.59 4.41
3359 7673 2.033755 CACTGAGGCTGCTGCTGAC 61.034 63.158 15.64 7.58 39.59 3.51
3360 7674 2.346365 CTGAGGCTGCTGCTGACA 59.654 61.111 15.05 11.46 39.59 3.58
3361 7675 1.302271 CTGAGGCTGCTGCTGACAA 60.302 57.895 15.05 1.61 39.59 3.18
3419 7749 3.434319 CCGCCACTGCCACATGTC 61.434 66.667 0.00 0.00 0.00 3.06
3420 7750 3.792047 CGCCACTGCCACATGTCG 61.792 66.667 0.00 0.00 0.00 4.35
3421 7751 2.669569 GCCACTGCCACATGTCGT 60.670 61.111 0.00 0.00 0.00 4.34
3422 7752 2.680913 GCCACTGCCACATGTCGTC 61.681 63.158 0.00 0.00 0.00 4.20
3423 7753 2.382746 CCACTGCCACATGTCGTCG 61.383 63.158 0.00 0.00 0.00 5.12
3424 7754 2.738521 ACTGCCACATGTCGTCGC 60.739 61.111 0.00 0.00 31.45 5.19
3425 7755 3.490759 CTGCCACATGTCGTCGCC 61.491 66.667 0.00 0.00 29.33 5.54
3429 7759 3.842126 CACATGTCGTCGCCGCTG 61.842 66.667 0.00 0.00 0.00 5.18
3464 7794 3.445687 ACGCCGCCGTCATGACTA 61.446 61.111 22.95 0.00 46.39 2.59
3465 7795 2.954868 CGCCGCCGTCATGACTAC 60.955 66.667 22.95 13.58 0.00 2.73
3466 7796 2.183300 GCCGCCGTCATGACTACA 59.817 61.111 22.95 0.00 0.00 2.74
3467 7797 1.227263 GCCGCCGTCATGACTACAT 60.227 57.895 22.95 0.00 37.19 2.29
3477 7807 0.465705 ATGACTACATGAGGCCACCG 59.534 55.000 5.01 0.00 35.21 4.94
3478 7808 1.521681 GACTACATGAGGCCACCGC 60.522 63.158 5.01 0.00 0.00 5.68
3479 7809 1.961180 GACTACATGAGGCCACCGCT 61.961 60.000 5.01 0.00 34.44 5.52
3480 7810 1.221840 CTACATGAGGCCACCGCTT 59.778 57.895 5.01 0.00 34.44 4.68
3481 7811 0.464036 CTACATGAGGCCACCGCTTA 59.536 55.000 5.01 0.00 34.44 3.09
3482 7812 0.177141 TACATGAGGCCACCGCTTAC 59.823 55.000 5.01 0.00 34.44 2.34
3483 7813 1.221840 CATGAGGCCACCGCTTACT 59.778 57.895 5.01 0.00 34.44 2.24
3484 7814 0.811616 CATGAGGCCACCGCTTACTC 60.812 60.000 5.01 0.00 34.44 2.59
3485 7815 1.972660 ATGAGGCCACCGCTTACTCC 61.973 60.000 5.01 0.00 34.44 3.85
3486 7816 3.718210 GAGGCCACCGCTTACTCCG 62.718 68.421 5.01 0.00 34.44 4.63
3488 7818 4.452733 GCCACCGCTTACTCCGCT 62.453 66.667 0.00 0.00 0.00 5.52
3489 7819 2.202756 CCACCGCTTACTCCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
3490 7820 2.711922 CCACCGCTTACTCCGCTCT 61.712 63.158 0.00 0.00 0.00 4.09
3491 7821 1.517257 CACCGCTTACTCCGCTCTG 60.517 63.158 0.00 0.00 0.00 3.35
3492 7822 1.977544 ACCGCTTACTCCGCTCTGT 60.978 57.895 0.00 0.00 0.00 3.41
3493 7823 1.517257 CCGCTTACTCCGCTCTGTG 60.517 63.158 0.00 0.00 0.00 3.66
3494 7824 1.517257 CGCTTACTCCGCTCTGTGG 60.517 63.158 0.00 0.00 33.99 4.17
3495 7825 1.811679 GCTTACTCCGCTCTGTGGC 60.812 63.158 0.00 0.00 32.51 5.01
3496 7826 1.153549 CTTACTCCGCTCTGTGGCC 60.154 63.158 0.00 0.00 32.51 5.36
3497 7827 1.888436 CTTACTCCGCTCTGTGGCCA 61.888 60.000 0.00 0.00 32.51 5.36
3498 7828 2.167398 TTACTCCGCTCTGTGGCCAC 62.167 60.000 29.67 29.67 32.51 5.01
3499 7829 4.767255 CTCCGCTCTGTGGCCACC 62.767 72.222 32.62 16.24 32.51 4.61
3524 7854 2.279252 ACTGCCACACGTCGTCAC 60.279 61.111 0.00 0.00 0.00 3.67
3525 7855 3.036084 CTGCCACACGTCGTCACC 61.036 66.667 0.00 0.00 0.00 4.02
3873 8203 3.958860 GCCACCACCTCTGCCACT 61.959 66.667 0.00 0.00 0.00 4.00
3874 8204 2.348998 CCACCACCTCTGCCACTC 59.651 66.667 0.00 0.00 0.00 3.51
3875 8205 2.219875 CCACCACCTCTGCCACTCT 61.220 63.158 0.00 0.00 0.00 3.24
3876 8206 1.004080 CACCACCTCTGCCACTCTG 60.004 63.158 0.00 0.00 0.00 3.35
3877 8207 2.046507 CCACCTCTGCCACTCTGC 60.047 66.667 0.00 0.00 0.00 4.26
3878 8208 2.046507 CACCTCTGCCACTCTGCC 60.047 66.667 0.00 0.00 0.00 4.85
3879 8209 3.699894 ACCTCTGCCACTCTGCCG 61.700 66.667 0.00 0.00 0.00 5.69
3898 8228 4.584518 CACCTGCCACCACTGCCA 62.585 66.667 0.00 0.00 0.00 4.92
3899 8229 4.586235 ACCTGCCACCACTGCCAC 62.586 66.667 0.00 0.00 0.00 5.01
3900 8230 4.584518 CCTGCCACCACTGCCACA 62.585 66.667 0.00 0.00 0.00 4.17
3901 8231 3.289834 CTGCCACCACTGCCACAC 61.290 66.667 0.00 0.00 0.00 3.82
3904 8234 2.972505 CCACCACTGCCACACGTC 60.973 66.667 0.00 0.00 0.00 4.34
3905 8235 3.337889 CACCACTGCCACACGTCG 61.338 66.667 0.00 0.00 0.00 5.12
3960 8290 4.702081 GCTGCCGTCGACGACTGT 62.702 66.667 37.65 0.00 43.02 3.55
3961 8291 2.801162 CTGCCGTCGACGACTGTG 60.801 66.667 37.65 21.69 43.02 3.66
3962 8292 4.994201 TGCCGTCGACGACTGTGC 62.994 66.667 37.65 29.67 43.02 4.57
3964 8294 4.379143 CCGTCGACGACTGTGCGA 62.379 66.667 37.65 0.00 43.02 5.10
3965 8295 2.865603 CGTCGACGACTGTGCGAG 60.866 66.667 33.35 4.53 43.02 5.03
3966 8296 2.502080 GTCGACGACTGTGCGAGG 60.502 66.667 20.52 0.00 34.41 4.63
3967 8297 4.400109 TCGACGACTGTGCGAGGC 62.400 66.667 0.00 0.00 34.83 4.70
3969 8299 4.357947 GACGACTGTGCGAGGCCA 62.358 66.667 5.01 0.00 34.83 5.36
3970 8300 4.664677 ACGACTGTGCGAGGCCAC 62.665 66.667 5.01 0.00 36.28 5.01
3996 8326 3.449227 CCGCTCTGCCGACACCTA 61.449 66.667 0.00 0.00 0.00 3.08
3997 8327 2.202623 CGCTCTGCCGACACCTAC 60.203 66.667 0.00 0.00 0.00 3.18
3998 8328 2.184579 GCTCTGCCGACACCTACC 59.815 66.667 0.00 0.00 0.00 3.18
3999 8329 2.490217 CTCTGCCGACACCTACCG 59.510 66.667 0.00 0.00 0.00 4.02
4000 8330 3.701604 CTCTGCCGACACCTACCGC 62.702 68.421 0.00 0.00 0.00 5.68
4001 8331 3.760035 CTGCCGACACCTACCGCT 61.760 66.667 0.00 0.00 0.00 5.52
4002 8332 3.989698 CTGCCGACACCTACCGCTG 62.990 68.421 0.00 0.00 0.00 5.18
4004 8334 3.760035 CCGACACCTACCGCTGCT 61.760 66.667 0.00 0.00 0.00 4.24
4005 8335 2.507102 CGACACCTACCGCTGCTG 60.507 66.667 0.00 0.00 0.00 4.41
4006 8336 2.815647 GACACCTACCGCTGCTGC 60.816 66.667 5.34 5.34 0.00 5.25
4007 8337 4.394712 ACACCTACCGCTGCTGCC 62.395 66.667 10.24 0.00 35.36 4.85
4050 8380 3.672447 TGCCGCCGTCAACGACTA 61.672 61.111 3.71 0.00 43.02 2.59
4051 8381 3.177249 GCCGCCGTCAACGACTAC 61.177 66.667 3.71 0.00 43.02 2.73
4052 8382 2.872925 CCGCCGTCAACGACTACG 60.873 66.667 3.71 2.66 43.02 3.51
4053 8383 3.530104 CGCCGTCAACGACTACGC 61.530 66.667 3.71 0.00 43.96 4.42
4054 8384 3.530104 GCCGTCAACGACTACGCG 61.530 66.667 3.53 3.53 43.96 6.01
4055 8385 2.174107 CCGTCAACGACTACGCGA 59.826 61.111 15.93 0.00 43.96 5.87
4056 8386 1.862147 CCGTCAACGACTACGCGAG 60.862 63.158 15.93 8.73 43.96 5.03
4057 8387 1.862147 CGTCAACGACTACGCGAGG 60.862 63.158 15.93 7.40 43.96 4.63
4058 8388 2.150837 GTCAACGACTACGCGAGGC 61.151 63.158 15.93 7.30 43.96 4.70
4059 8389 2.879462 CAACGACTACGCGAGGCC 60.879 66.667 15.93 0.00 43.96 5.19
4060 8390 3.367743 AACGACTACGCGAGGCCA 61.368 61.111 15.93 0.00 43.96 5.36
4061 8391 3.621892 AACGACTACGCGAGGCCAC 62.622 63.158 15.93 0.00 43.96 5.01
4062 8392 4.849329 CGACTACGCGAGGCCACC 62.849 72.222 15.93 0.00 0.00 4.61
4063 8393 4.849329 GACTACGCGAGGCCACCG 62.849 72.222 15.93 9.65 0.00 4.94
4065 8395 4.849329 CTACGCGAGGCCACCGTC 62.849 72.222 15.93 9.42 36.51 4.79
4151 8481 2.033755 CACTCGTCGTCCCGTCTCT 61.034 63.158 0.00 0.00 0.00 3.10
4160 8490 1.743958 CGTCCCGTCTCTGTCACTAAT 59.256 52.381 0.00 0.00 0.00 1.73
4175 8505 1.065418 ACTAATATGCGGGCCCTATGC 60.065 52.381 22.43 17.17 40.16 3.14
4187 8517 3.023832 GGCCCTATGCTTTTTGCTAGAA 58.976 45.455 0.00 0.00 43.37 2.10
4189 8519 4.100035 GGCCCTATGCTTTTTGCTAGAATT 59.900 41.667 0.00 0.00 43.37 2.17
4254 8584 5.823570 TGTTTACGGGAACTGAGAAAAATGA 59.176 36.000 5.05 0.00 38.67 2.57
4258 8588 5.805728 ACGGGAACTGAGAAAAATGACTAT 58.194 37.500 0.00 0.00 38.67 2.12
4259 8589 5.875359 ACGGGAACTGAGAAAAATGACTATC 59.125 40.000 0.00 0.00 38.67 2.08
4260 8590 5.294552 CGGGAACTGAGAAAAATGACTATCC 59.705 44.000 0.00 0.00 36.31 2.59
4261 8591 5.294552 GGGAACTGAGAAAAATGACTATCCG 59.705 44.000 0.00 0.00 0.00 4.18
4262 8592 6.106673 GGAACTGAGAAAAATGACTATCCGA 58.893 40.000 0.00 0.00 0.00 4.55
4264 8594 7.119262 GGAACTGAGAAAAATGACTATCCGAAA 59.881 37.037 0.00 0.00 0.00 3.46
4268 8598 8.391075 TGAGAAAAATGACTATCCGAAAACTT 57.609 30.769 0.00 0.00 0.00 2.66
4271 8601 6.510879 AAAATGACTATCCGAAAACTTCCC 57.489 37.500 0.00 0.00 0.00 3.97
4272 8602 4.837093 ATGACTATCCGAAAACTTCCCA 57.163 40.909 0.00 0.00 0.00 4.37
4273 8603 4.837093 TGACTATCCGAAAACTTCCCAT 57.163 40.909 0.00 0.00 0.00 4.00
4276 8615 6.713276 TGACTATCCGAAAACTTCCCATAAA 58.287 36.000 0.00 0.00 0.00 1.40
4284 8623 8.301002 TCCGAAAACTTCCCATAAATTTTACTG 58.699 33.333 0.00 0.00 0.00 2.74
4291 8630 9.100197 ACTTCCCATAAATTTTACTGGATGTTT 57.900 29.630 13.03 0.00 0.00 2.83
4314 8653 0.402121 AGGGGAACTCTTGGAACTGC 59.598 55.000 0.00 0.00 0.00 4.40
4378 8792 8.575649 AAATATAAGAAATGAACTTCACCCGT 57.424 30.769 0.00 0.00 0.00 5.28
4385 8802 1.487142 TGAACTTCACCCGTTCTCCAA 59.513 47.619 0.00 0.00 40.95 3.53
4386 8803 2.105821 TGAACTTCACCCGTTCTCCAAT 59.894 45.455 0.00 0.00 40.95 3.16
4389 8806 3.671716 ACTTCACCCGTTCTCCAATAAC 58.328 45.455 0.00 0.00 0.00 1.89
4402 8819 1.750778 CCAATAACGCTCCATTTGGCT 59.249 47.619 0.00 0.00 31.29 4.75
4403 8820 2.948979 CCAATAACGCTCCATTTGGCTA 59.051 45.455 0.00 0.00 31.29 3.93
4404 8821 3.003689 CCAATAACGCTCCATTTGGCTAG 59.996 47.826 0.00 0.00 31.29 3.42
4407 8824 2.311124 ACGCTCCATTTGGCTAGTAC 57.689 50.000 0.00 0.00 34.44 2.73
4408 8825 1.134491 ACGCTCCATTTGGCTAGTACC 60.134 52.381 0.00 0.00 34.44 3.34
4409 8826 1.134521 CGCTCCATTTGGCTAGTACCA 60.135 52.381 0.00 0.00 38.16 3.25
4421 8838 7.589958 TTGGCTAGTACCAAAAATGAAAGAA 57.410 32.000 0.00 0.00 46.65 2.52
4422 8839 7.589958 TGGCTAGTACCAAAAATGAAAGAAA 57.410 32.000 0.00 0.00 36.55 2.52
4423 8840 8.012957 TGGCTAGTACCAAAAATGAAAGAAAA 57.987 30.769 0.00 0.00 36.55 2.29
4424 8841 8.646900 TGGCTAGTACCAAAAATGAAAGAAAAT 58.353 29.630 0.00 0.00 36.55 1.82
4432 8849 9.454859 ACCAAAAATGAAAGAAAATAAACCACA 57.545 25.926 0.00 0.00 0.00 4.17
4433 8850 9.934190 CCAAAAATGAAAGAAAATAAACCACAG 57.066 29.630 0.00 0.00 0.00 3.66
4434 8851 9.934190 CAAAAATGAAAGAAAATAAACCACAGG 57.066 29.630 0.00 0.00 0.00 4.00
4435 8852 7.728847 AAATGAAAGAAAATAAACCACAGGC 57.271 32.000 0.00 0.00 0.00 4.85
4443 8897 1.993956 TAAACCACAGGCAACAGCAT 58.006 45.000 0.00 0.00 41.41 3.79
4486 8940 3.154710 TCTACCACTCTGGCCATATACG 58.845 50.000 5.51 0.00 42.67 3.06
4615 9071 5.070847 ACAAAAACAGGGAGCAAAATCTCAT 59.929 36.000 0.00 0.00 34.84 2.90
4636 9092 1.346722 ACACCCAAACGACCTAGGAAG 59.653 52.381 17.98 11.23 0.00 3.46
4653 9109 3.117512 AGGAAGAAAACACACATGAGGGT 60.118 43.478 0.00 0.00 0.00 4.34
4661 9117 3.248024 ACACACATGAGGGTAGGAAAGA 58.752 45.455 0.00 0.00 0.00 2.52
4689 9145 5.612351 AGGAAGAAACTTTCCAGTGTCTAC 58.388 41.667 7.46 0.00 45.78 2.59
4714 9170 4.476862 GGAAATTCCTTCTTTCGCTGTTC 58.523 43.478 4.46 0.00 34.19 3.18
4719 9175 1.002900 CCTTCTTTCGCTGTTCGCAAA 60.003 47.619 0.00 0.00 39.08 3.68
4721 9177 0.586319 TCTTTCGCTGTTCGCAAAGG 59.414 50.000 0.00 0.00 39.08 3.11
4722 9178 0.998727 CTTTCGCTGTTCGCAAAGGC 60.999 55.000 0.00 0.00 39.08 4.35
4723 9179 1.719725 TTTCGCTGTTCGCAAAGGCA 61.720 50.000 0.00 0.00 41.24 4.75
4724 9180 1.719725 TTCGCTGTTCGCAAAGGCAA 61.720 50.000 0.00 0.00 41.24 4.52
4742 9198 1.815003 CAAATCGCTTGGCTTCTTCCT 59.185 47.619 0.00 0.00 0.00 3.36
4748 9204 1.747924 GCTTGGCTTCTTCCTTGATCC 59.252 52.381 0.00 0.00 0.00 3.36
4767 9223 3.184628 TCCTGTCCTCAAACATCTGGAT 58.815 45.455 0.00 0.00 0.00 3.41
4768 9224 3.588842 TCCTGTCCTCAAACATCTGGATT 59.411 43.478 0.00 0.00 0.00 3.01
4769 9225 3.944015 CCTGTCCTCAAACATCTGGATTC 59.056 47.826 0.00 0.00 0.00 2.52
4770 9226 4.566278 CCTGTCCTCAAACATCTGGATTCA 60.566 45.833 0.00 0.00 0.00 2.57
4771 9227 4.984295 TGTCCTCAAACATCTGGATTCAA 58.016 39.130 0.00 0.00 0.00 2.69
4772 9228 5.005740 TGTCCTCAAACATCTGGATTCAAG 58.994 41.667 0.00 0.00 0.00 3.02
4773 9229 5.006386 GTCCTCAAACATCTGGATTCAAGT 58.994 41.667 0.00 0.00 0.00 3.16
4774 9230 5.123027 GTCCTCAAACATCTGGATTCAAGTC 59.877 44.000 0.00 0.00 0.00 3.01
4775 9231 5.013495 TCCTCAAACATCTGGATTCAAGTCT 59.987 40.000 0.00 0.00 0.00 3.24
4776 9232 5.123502 CCTCAAACATCTGGATTCAAGTCTG 59.876 44.000 0.00 0.00 0.00 3.51
4777 9233 5.868454 TCAAACATCTGGATTCAAGTCTGA 58.132 37.500 1.90 0.00 0.00 3.27
4778 9234 6.298361 TCAAACATCTGGATTCAAGTCTGAA 58.702 36.000 1.90 0.00 45.53 3.02
4779 9235 6.429078 TCAAACATCTGGATTCAAGTCTGAAG 59.571 38.462 0.00 0.00 44.68 3.02
4780 9236 4.841422 ACATCTGGATTCAAGTCTGAAGG 58.159 43.478 0.00 0.00 44.68 3.46
4781 9237 4.288105 ACATCTGGATTCAAGTCTGAAGGT 59.712 41.667 0.00 0.00 44.68 3.50
4782 9238 4.982241 TCTGGATTCAAGTCTGAAGGTT 57.018 40.909 0.00 0.00 44.68 3.50
4783 9239 5.310409 TCTGGATTCAAGTCTGAAGGTTT 57.690 39.130 0.00 0.00 44.68 3.27
4784 9240 5.694995 TCTGGATTCAAGTCTGAAGGTTTT 58.305 37.500 0.00 0.00 44.68 2.43
4785 9241 5.765182 TCTGGATTCAAGTCTGAAGGTTTTC 59.235 40.000 0.00 0.00 44.68 2.29
4786 9242 5.445069 TGGATTCAAGTCTGAAGGTTTTCA 58.555 37.500 0.00 0.00 44.68 2.69
4787 9243 5.890985 TGGATTCAAGTCTGAAGGTTTTCAA 59.109 36.000 0.00 0.00 44.68 2.69
4788 9244 6.379703 TGGATTCAAGTCTGAAGGTTTTCAAA 59.620 34.615 0.00 0.00 44.68 2.69
4789 9245 6.920210 GGATTCAAGTCTGAAGGTTTTCAAAG 59.080 38.462 0.00 0.00 44.68 2.77
4790 9246 7.201821 GGATTCAAGTCTGAAGGTTTTCAAAGA 60.202 37.037 0.00 0.00 44.68 2.52
4791 9247 6.436843 TCAAGTCTGAAGGTTTTCAAAGAC 57.563 37.500 0.00 0.00 42.48 3.01
4792 9248 6.180472 TCAAGTCTGAAGGTTTTCAAAGACT 58.820 36.000 6.44 6.44 44.34 3.24
4793 9249 6.094048 TCAAGTCTGAAGGTTTTCAAAGACTG 59.906 38.462 10.85 7.35 42.94 3.51
4794 9250 4.884164 AGTCTGAAGGTTTTCAAAGACTGG 59.116 41.667 9.84 0.00 42.53 4.00
4795 9251 3.632145 TCTGAAGGTTTTCAAAGACTGGC 59.368 43.478 0.00 0.00 42.48 4.85
4813 9269 2.158325 TGGCTTGTTCCTTTCCTTCCAT 60.158 45.455 0.00 0.00 0.00 3.41
4820 9276 4.469945 TGTTCCTTTCCTTCCATATCGACT 59.530 41.667 0.00 0.00 0.00 4.18
4826 9282 3.409570 TCCTTCCATATCGACTAGACGG 58.590 50.000 14.39 0.00 0.00 4.79
4859 9315 4.923264 AGCGAATTAAACGACTTCTTCC 57.077 40.909 9.09 0.00 0.00 3.46
4888 9344 5.067273 CCCTACAACCTTTCACATGTGTTA 58.933 41.667 24.63 11.95 0.00 2.41
4901 9357 0.107116 TGTGTTAAACCACCACGGCT 60.107 50.000 0.00 0.00 39.03 5.52
4906 9362 1.697082 TAAACCACCACGGCTCCACA 61.697 55.000 0.00 0.00 39.03 4.17
4932 9388 8.996651 ACCTGAAACTATTATTAGGAATTGGG 57.003 34.615 0.00 0.00 0.00 4.12
4933 9389 8.787818 ACCTGAAACTATTATTAGGAATTGGGA 58.212 33.333 0.00 0.00 0.00 4.37
4934 9390 9.813826 CCTGAAACTATTATTAGGAATTGGGAT 57.186 33.333 0.00 0.00 0.00 3.85
4938 9394 9.755122 AAACTATTATTAGGAATTGGGATAGCC 57.245 33.333 0.00 0.00 0.00 3.93
4939 9395 8.701643 ACTATTATTAGGAATTGGGATAGCCT 57.298 34.615 0.00 0.00 0.00 4.58
4940 9396 8.773216 ACTATTATTAGGAATTGGGATAGCCTC 58.227 37.037 0.00 0.00 0.00 4.70
4941 9397 7.837359 ATTATTAGGAATTGGGATAGCCTCT 57.163 36.000 0.00 0.00 0.00 3.69
4942 9398 7.648177 TTATTAGGAATTGGGATAGCCTCTT 57.352 36.000 0.00 0.00 0.00 2.85
4943 9399 5.568620 TTAGGAATTGGGATAGCCTCTTC 57.431 43.478 0.00 0.00 0.00 2.87
4944 9400 3.397527 AGGAATTGGGATAGCCTCTTCA 58.602 45.455 0.00 0.00 0.00 3.02
4945 9401 3.788142 AGGAATTGGGATAGCCTCTTCAA 59.212 43.478 0.00 0.00 0.00 2.69
4946 9402 4.140536 GGAATTGGGATAGCCTCTTCAAG 58.859 47.826 0.00 0.00 0.00 3.02
4957 9413 3.425162 CCTCTTCAAGGTTTGCCTAGT 57.575 47.619 0.00 0.00 46.33 2.57
4958 9414 3.756117 CCTCTTCAAGGTTTGCCTAGTT 58.244 45.455 0.00 0.00 46.33 2.24
4959 9415 3.753797 CCTCTTCAAGGTTTGCCTAGTTC 59.246 47.826 0.00 0.00 46.33 3.01
4960 9416 4.389374 CTCTTCAAGGTTTGCCTAGTTCA 58.611 43.478 0.00 0.00 46.33 3.18
5003 9461 6.000840 TGTTAATTACAGCACTCCATGAACA 58.999 36.000 0.00 0.00 31.68 3.18
5022 9480 3.087031 ACAAGTGATTGGCATTCTCCTG 58.913 45.455 10.41 9.05 0.00 3.86
5023 9481 3.087031 CAAGTGATTGGCATTCTCCTGT 58.913 45.455 10.41 0.00 0.00 4.00
5029 9487 0.890542 TGGCATTCTCCTGTGTGTGC 60.891 55.000 0.00 0.00 0.00 4.57
5052 9510 1.840635 ACAGAAGCTATCCCCAGTTCC 59.159 52.381 0.00 0.00 0.00 3.62
5153 9635 1.206849 GAGGAAGAAGAGTCAGCCCAG 59.793 57.143 0.00 0.00 0.00 4.45
5165 10891 2.689983 GTCAGCCCAGACCCATTTTATG 59.310 50.000 0.00 0.00 32.36 1.90
5302 11032 2.584391 GCCAGGGTTCGACCTCACT 61.584 63.158 0.00 0.00 39.34 3.41
5311 11041 2.913777 TCGACCTCACTTGTGATACG 57.086 50.000 3.79 9.96 0.00 3.06
5346 11076 0.626916 AAGCTACTCCTCGTCCTCCT 59.373 55.000 0.00 0.00 0.00 3.69
5412 11173 1.984570 TGCGCCTCAGCTCCTACTT 60.985 57.895 4.18 0.00 38.13 2.24
5435 11196 0.963962 CATGCATATTGACCCCAGCC 59.036 55.000 0.00 0.00 0.00 4.85
5445 11206 0.036294 GACCCCAGCCACTCAACTAC 60.036 60.000 0.00 0.00 0.00 2.73
5450 11211 3.244770 CCCCAGCCACTCAACTACTTTTA 60.245 47.826 0.00 0.00 0.00 1.52
5456 11217 6.363357 CAGCCACTCAACTACTTTTATTTTGC 59.637 38.462 0.00 0.00 0.00 3.68
5511 11278 0.798776 GGCAACGAGTTCATCCTGTG 59.201 55.000 0.00 0.00 0.00 3.66
5707 11477 1.722011 ACGACATTCCCACATCGTTC 58.278 50.000 0.00 0.00 44.98 3.95
5711 11481 3.666902 CGACATTCCCACATCGTTCAAAC 60.667 47.826 0.00 0.00 0.00 2.93
5714 11484 5.067273 ACATTCCCACATCGTTCAAACTTA 58.933 37.500 0.00 0.00 0.00 2.24
5717 11487 5.682943 TCCCACATCGTTCAAACTTAAAG 57.317 39.130 0.00 0.00 0.00 1.85
5831 11601 0.470833 GGAGATAGCAGGGCAGGAGA 60.471 60.000 0.00 0.00 0.00 3.71
5884 11654 0.615331 TTCTGCAGTGGGAGGTCATC 59.385 55.000 14.67 0.00 32.55 2.92
5885 11655 1.153489 CTGCAGTGGGAGGTCATCG 60.153 63.158 5.25 0.00 0.00 3.84
5905 11675 2.280186 GGCTTACCCCGATCAGCG 60.280 66.667 0.00 0.00 40.47 5.18
5941 11711 2.060980 AGGCTGTCCATCGGAGGTC 61.061 63.158 0.00 0.00 29.39 3.85
5944 11714 3.758088 CTGTCCATCGGAGGTCGCG 62.758 68.421 0.00 0.00 39.05 5.87
5945 11715 4.570663 GTCCATCGGAGGTCGCGG 62.571 72.222 6.13 0.00 39.05 6.46
5988 11758 1.468520 CAACGATTGCAAACGAGGGAT 59.531 47.619 31.96 9.54 0.00 3.85
6073 13571 3.885297 CCGATGGATGCAAAGGTTAGAAT 59.115 43.478 0.00 0.00 0.00 2.40
6125 14145 9.601971 TGTGTTTACGCTATTAATTTTCTTGTC 57.398 29.630 0.00 0.00 0.00 3.18
6133 14153 8.336080 CGCTATTAATTTTCTTGTCCCTCTAAC 58.664 37.037 0.00 0.00 0.00 2.34
6204 14245 2.855180 CAACGCTGCAACTTTATGAGG 58.145 47.619 0.00 0.00 0.00 3.86
6205 14246 2.472695 ACGCTGCAACTTTATGAGGA 57.527 45.000 0.00 0.00 0.00 3.71
6206 14247 2.991250 ACGCTGCAACTTTATGAGGAT 58.009 42.857 0.00 0.00 0.00 3.24
6207 14248 2.939103 ACGCTGCAACTTTATGAGGATC 59.061 45.455 0.00 0.00 0.00 3.36
6208 14249 2.289002 CGCTGCAACTTTATGAGGATCC 59.711 50.000 2.48 2.48 0.00 3.36
6209 14250 2.620585 GCTGCAACTTTATGAGGATCCC 59.379 50.000 8.55 0.11 0.00 3.85
6210 14251 3.686691 GCTGCAACTTTATGAGGATCCCT 60.687 47.826 8.55 0.00 36.03 4.20
6218 14259 4.304432 GAGGATCCCTCCACCCTC 57.696 66.667 8.55 0.00 44.36 4.30
6219 14260 1.460497 GAGGATCCCTCCACCCTCC 60.460 68.421 8.55 0.00 44.36 4.30
6250 14313 8.352201 TCTGTTTAATTTCACATCAAGACAAGG 58.648 33.333 0.00 0.00 0.00 3.61
6286 14349 6.861055 ACTTGGTATTTGTTTCAAGCAATACG 59.139 34.615 0.00 0.00 39.92 3.06
6300 14379 5.924475 AGCAATACGTATTGGCATTCTAC 57.076 39.130 36.61 22.92 42.46 2.59
6312 14396 9.130312 GTATTGGCATTCTACTTACTAATCGAG 57.870 37.037 0.00 0.00 0.00 4.04
6386 14487 9.566432 AGAAGAGAACTTGATGTATGTTTCTTT 57.434 29.630 0.00 0.00 36.39 2.52
6403 14504 6.208599 TGTTTCTTTGTCCAACTTGAACTCTT 59.791 34.615 0.00 0.00 0.00 2.85
6481 14601 9.237846 GTAATATGAACTAATGAAGCCAAAAGC 57.762 33.333 0.00 0.00 44.25 3.51
6482 14602 4.519540 TGAACTAATGAAGCCAAAAGCC 57.480 40.909 0.00 0.00 45.47 4.35
6488 14608 4.790765 AATGAAGCCAAAAGCCTACTTC 57.209 40.909 0.00 0.00 45.47 3.01
6540 14662 5.579718 TGAGTAAATCTAGAGCAAGCGTAC 58.420 41.667 0.00 0.00 0.00 3.67
6545 14667 7.863375 AGTAAATCTAGAGCAAGCGTACAATAG 59.137 37.037 0.00 0.00 0.00 1.73
6564 14690 5.843673 ATAGTATGCTCCCATGATAGACG 57.156 43.478 0.00 0.00 32.85 4.18
6578 14704 8.883731 CCCATGATAGACGAAATGAATAATACC 58.116 37.037 0.00 0.00 0.00 2.73
6579 14707 8.595533 CCATGATAGACGAAATGAATAATACCG 58.404 37.037 0.00 0.00 0.00 4.02
6664 14795 3.726557 TGTTCTTGCTGGATCCTTCAT 57.273 42.857 14.23 0.00 0.00 2.57
6665 14796 4.038271 TGTTCTTGCTGGATCCTTCATT 57.962 40.909 14.23 0.00 0.00 2.57
6686 14817 9.571810 TTCATTCATAAGAAATTCAAACATCGG 57.428 29.630 0.00 0.00 37.29 4.18
6989 15120 7.500992 TCCTATCACAGATCAACCATAGAAAC 58.499 38.462 0.00 0.00 0.00 2.78
7186 15320 4.012374 CAACAGCTTCAGTACCCATCATT 58.988 43.478 0.00 0.00 0.00 2.57
7493 15631 4.389687 CCTTATTCACACAAGGCAATTTGC 59.610 41.667 13.04 13.04 44.08 3.68
7549 15687 1.135575 GGCAGCGAAATGGAAGAAGTG 60.136 52.381 0.00 0.00 0.00 3.16
7607 15745 0.744874 GGATCGTCCGTCCATGAAGA 59.255 55.000 0.00 0.00 35.76 2.87
7659 15797 2.042762 CAGGGGACATGAGGGGGA 59.957 66.667 0.00 0.00 0.00 4.81
7773 15911 4.607239 TCAAGGTATCCTCGGTAGTTCTT 58.393 43.478 0.00 0.00 30.89 2.52
7782 15920 3.447944 CCTCGGTAGTTCTTCTTAAGCCT 59.552 47.826 0.00 0.00 0.00 4.58
7830 15970 5.233083 ACATCACAGTTTGGAGATTCTCA 57.767 39.130 15.36 0.00 31.08 3.27
7971 16152 4.868171 TGTAATCGTGTGCTTAGCTAAAGG 59.132 41.667 7.74 0.00 35.58 3.11
7983 16165 8.178313 GTGCTTAGCTAAAGGAAAGAATGTAAG 58.822 37.037 7.74 0.00 37.28 2.34
7987 16169 6.418946 AGCTAAAGGAAAGAATGTAAGGAGG 58.581 40.000 0.00 0.00 0.00 4.30
7993 16175 2.969628 AGAATGTAAGGAGGTCGCTG 57.030 50.000 0.00 0.00 0.00 5.18
8003 16185 0.454600 GAGGTCGCTGTGTTCCGATA 59.545 55.000 0.00 0.00 35.76 2.92
8033 16215 8.194769 TCTTCTTTATTTGTGTTTTCCCTTGAC 58.805 33.333 0.00 0.00 0.00 3.18
8038 16220 4.513406 TTGTGTTTTCCCTTGACCTACT 57.487 40.909 0.00 0.00 0.00 2.57
8094 16285 8.592105 AATCAAACACCACAAATTTGTCTATG 57.408 30.769 20.85 19.15 39.91 2.23
8109 16300 3.559655 TGTCTATGCAAGTGTGTGTGTTC 59.440 43.478 0.00 0.00 0.00 3.18
8131 16322 8.160765 TGTTCCTTCAGACTCCAAAATGTTATA 58.839 33.333 0.00 0.00 0.00 0.98
8161 16352 1.427368 AGCAGGACCAACACCCATTAA 59.573 47.619 0.00 0.00 0.00 1.40
8294 16492 5.804639 TGCTTAGATGGTTAGCAGAGAAAA 58.195 37.500 0.00 0.00 39.79 2.29
8354 16552 9.357652 CATAAGGGTTTGATATGTTTTCAGTTG 57.642 33.333 0.00 0.00 0.00 3.16
8355 16553 7.595819 AAGGGTTTGATATGTTTTCAGTTGA 57.404 32.000 0.00 0.00 0.00 3.18
8356 16554 7.595819 AGGGTTTGATATGTTTTCAGTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
8357 16555 8.017418 AGGGTTTGATATGTTTTCAGTTGAAA 57.983 30.769 3.28 3.28 41.77 2.69
8358 16556 8.650490 AGGGTTTGATATGTTTTCAGTTGAAAT 58.350 29.630 8.02 0.00 42.83 2.17
8359 16557 9.271828 GGGTTTGATATGTTTTCAGTTGAAATT 57.728 29.630 8.02 0.76 42.83 1.82
8363 16561 9.474920 TTGATATGTTTTCAGTTGAAATTGTCC 57.525 29.630 8.02 0.00 42.83 4.02
8364 16562 7.807433 TGATATGTTTTCAGTTGAAATTGTCCG 59.193 33.333 8.02 0.00 42.83 4.79
8365 16563 4.109050 TGTTTTCAGTTGAAATTGTCCGC 58.891 39.130 8.02 0.00 42.83 5.54
8366 16564 4.109050 GTTTTCAGTTGAAATTGTCCGCA 58.891 39.130 8.02 0.00 42.83 5.69
8367 16565 3.347958 TTCAGTTGAAATTGTCCGCAC 57.652 42.857 0.00 0.00 0.00 5.34
8368 16566 1.262950 TCAGTTGAAATTGTCCGCACG 59.737 47.619 0.00 0.00 0.00 5.34
8369 16567 0.040425 AGTTGAAATTGTCCGCACGC 60.040 50.000 0.00 0.00 0.00 5.34
8370 16568 1.001745 GTTGAAATTGTCCGCACGCC 61.002 55.000 0.00 0.00 0.00 5.68
8371 16569 1.448119 TTGAAATTGTCCGCACGCCA 61.448 50.000 0.00 0.00 0.00 5.69
8372 16570 1.442017 GAAATTGTCCGCACGCCAC 60.442 57.895 0.00 0.00 0.00 5.01
8373 16571 2.123988 GAAATTGTCCGCACGCCACA 62.124 55.000 0.00 0.00 0.00 4.17
8374 16572 1.729470 AAATTGTCCGCACGCCACAA 61.729 50.000 7.85 7.85 34.61 3.33
8375 16573 2.128853 AATTGTCCGCACGCCACAAG 62.129 55.000 10.33 0.00 33.64 3.16
8377 16575 4.980805 GTCCGCACGCCACAAGGA 62.981 66.667 0.00 0.00 36.89 3.36
8378 16576 4.015406 TCCGCACGCCACAAGGAT 62.015 61.111 0.00 0.00 36.89 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 175 1.379710 ACAACCCTGTTGCACAGCA 60.380 52.632 6.86 0.00 44.63 4.41
175 183 0.763223 AGGACTCCGACAACCCTGTT 60.763 55.000 0.00 0.00 35.30 3.16
219 227 2.691011 TGTAAAAGCTGGGTGTGGTTTC 59.309 45.455 0.00 0.00 34.59 2.78
244 252 2.287788 CGTGCTTGAATTCTGGCAAACT 60.288 45.455 21.02 0.00 36.43 2.66
475 483 4.920640 AGAGTCTAATCATGGTACGTGG 57.079 45.455 0.00 0.00 0.00 4.94
513 521 0.035317 ATGCGCTCTCCAGTCACAAA 59.965 50.000 9.73 0.00 0.00 2.83
602 611 1.928706 GAGAGAGAGGAGCAACGCGT 61.929 60.000 5.58 5.58 0.00 6.01
604 613 1.140804 GGAGAGAGAGGAGCAACGC 59.859 63.158 0.00 0.00 0.00 4.84
792 829 4.245660 CCCGTGCATGTATTCTATCGAAT 58.754 43.478 4.96 0.00 42.34 3.34
943 992 2.583593 GCGGTGATGGTCGAGAGC 60.584 66.667 0.00 0.00 0.00 4.09
970 1027 0.537653 TGGAGTGTGAAACGTGACCA 59.462 50.000 0.00 0.00 42.39 4.02
1120 3873 5.562623 GCAGTAAAAACGTAAATTCCGACAG 59.437 40.000 4.67 0.00 0.00 3.51
1298 4065 1.839994 TCCATCACCACTCCCAAGATC 59.160 52.381 0.00 0.00 0.00 2.75
1338 4105 1.632409 AGCAAGGAGTGGTGACATCAT 59.368 47.619 0.00 0.00 46.14 2.45
1428 4195 2.979120 GCCAAACGGGTACGGCAA 60.979 61.111 1.72 0.00 46.48 4.52
1616 4387 1.238439 CGAGTGTGCCTTCACCATTT 58.762 50.000 0.00 0.00 42.46 2.32
1789 4560 1.347707 TGCCTTCTTCGAGTGTGGATT 59.652 47.619 1.63 0.00 0.00 3.01
2163 4942 0.664761 CCTTGGTAGCCATCATTGCG 59.335 55.000 0.00 0.00 31.53 4.85
2196 4975 2.224113 CCATACCTTTGCATCCATTGGC 60.224 50.000 0.00 0.00 0.00 4.52
2232 5019 4.214119 CGTCTCAAATCAGGAAAAGAAGCA 59.786 41.667 0.00 0.00 0.00 3.91
2233 5020 4.452455 TCGTCTCAAATCAGGAAAAGAAGC 59.548 41.667 0.00 0.00 0.00 3.86
2285 5073 4.662145 GAACCAACACATGCTAGCATTAC 58.338 43.478 27.59 7.55 33.90 1.89
2353 5163 3.990959 TGGTACAATCACCATAGCACA 57.009 42.857 0.00 0.00 43.76 4.57
2407 5220 2.372074 GGGTCGCCATGGGTTCCTA 61.372 63.158 15.13 0.00 0.00 2.94
2440 5253 2.478539 GGGACGAAATTGATGAAGCAGC 60.479 50.000 0.00 0.00 0.00 5.25
2614 5649 5.907207 TGTTCTCTAAGATGATGGCACTAC 58.093 41.667 0.00 0.00 0.00 2.73
2700 5739 9.719279 CTAAGTAAATCCGTAAAGTCTCACTAG 57.281 37.037 0.00 0.00 0.00 2.57
2788 5974 3.181495 ACGTTTGCGAAATTGGAGTGAAA 60.181 39.130 0.00 0.00 42.00 2.69
2808 5995 8.506140 ACAAAATGATGTTTTTCATGAGTACG 57.494 30.769 0.00 0.00 36.48 3.67
2835 6022 7.557724 AGGGAAGTCTAAACTAATAGTTCTGC 58.442 38.462 6.09 0.00 37.47 4.26
2874 6068 2.760374 CCTTAGATGCGAATCTCCACC 58.240 52.381 9.87 0.00 32.36 4.61
2988 6643 2.670509 GCTGATTTGCTGCAAAGGTCTC 60.671 50.000 28.86 21.92 40.75 3.36
3015 7309 9.442047 TTTGGCAAAAGTTTTATCTGAAAAAGA 57.558 25.926 10.83 0.00 39.94 2.52
3114 7416 5.999205 ATGAGATATAGGAGCTGTTGGAG 57.001 43.478 0.00 0.00 0.00 3.86
3116 7418 8.908786 TTTTTATGAGATATAGGAGCTGTTGG 57.091 34.615 0.00 0.00 0.00 3.77
3153 7455 1.989706 TCTTTTTCCCCAACTTCCCG 58.010 50.000 0.00 0.00 0.00 5.14
3166 7468 1.688735 GCTGTTGGAGGCCTTCTTTTT 59.311 47.619 13.68 0.00 0.00 1.94
3171 7474 0.037447 AAGAGCTGTTGGAGGCCTTC 59.963 55.000 6.77 4.87 0.00 3.46
3197 7500 1.835531 TGTTTCTAGGGGATCCGTTCC 59.164 52.381 5.45 0.98 44.62 3.62
3198 7501 2.419713 GGTGTTTCTAGGGGATCCGTTC 60.420 54.545 5.45 0.00 38.33 3.95
3199 7502 1.558294 GGTGTTTCTAGGGGATCCGTT 59.442 52.381 5.45 0.00 38.33 4.44
3200 7503 1.201424 GGTGTTTCTAGGGGATCCGT 58.799 55.000 5.45 0.00 38.33 4.69
3209 7523 6.889198 TGGAGGATTGATAAGGTGTTTCTAG 58.111 40.000 0.00 0.00 0.00 2.43
3221 7535 6.884472 TCCTGTAAACTTGGAGGATTGATA 57.116 37.500 0.00 0.00 29.25 2.15
3222 7536 5.779241 TCCTGTAAACTTGGAGGATTGAT 57.221 39.130 0.00 0.00 29.25 2.57
3225 7539 5.843019 TCTTCCTGTAAACTTGGAGGATT 57.157 39.130 0.00 0.00 34.53 3.01
3234 7548 3.956744 GAAGGCCATCTTCCTGTAAACT 58.043 45.455 5.01 0.00 44.60 2.66
3256 7570 3.226777 TCCACCCGCCAAAATTATATGG 58.773 45.455 1.46 1.46 39.80 2.74
3258 7572 6.094881 CGATTATCCACCCGCCAAAATTATAT 59.905 38.462 0.00 0.00 0.00 0.86
3281 7595 0.944311 GCTCGTGAAGTTTCAGGCGA 60.944 55.000 9.13 8.09 41.46 5.54
3285 7599 2.097202 CGTTCTGCTCGTGAAGTTTCAG 60.097 50.000 0.00 0.00 37.98 3.02
3291 7605 2.720758 CGGCGTTCTGCTCGTGAAG 61.721 63.158 0.00 0.00 45.43 3.02
3331 7645 2.972505 CCTCAGTGCACGGCGTTT 60.973 61.111 11.19 0.00 0.00 3.60
3339 7653 3.949980 AGCAGCAGCCTCAGTGCA 61.950 61.111 6.37 0.00 43.82 4.57
3340 7654 3.432588 CAGCAGCAGCCTCAGTGC 61.433 66.667 0.00 0.00 43.56 4.40
3341 7655 2.033755 GTCAGCAGCAGCCTCAGTG 61.034 63.158 0.00 0.00 43.56 3.66
3342 7656 2.048419 TTGTCAGCAGCAGCCTCAGT 62.048 55.000 0.00 0.00 43.56 3.41
3344 7658 1.598962 GTTGTCAGCAGCAGCCTCA 60.599 57.895 0.00 0.00 43.56 3.86
3345 7659 0.036952 TAGTTGTCAGCAGCAGCCTC 60.037 55.000 0.00 0.00 43.56 4.70
3346 7660 0.321122 GTAGTTGTCAGCAGCAGCCT 60.321 55.000 0.00 0.00 43.56 4.58
3350 7664 0.387565 TCACGTAGTTGTCAGCAGCA 59.612 50.000 0.00 0.00 41.61 4.41
3351 7665 1.063806 CTCACGTAGTTGTCAGCAGC 58.936 55.000 0.00 0.00 41.61 5.25
3352 7666 1.702886 CCTCACGTAGTTGTCAGCAG 58.297 55.000 0.00 0.00 41.61 4.24
3354 7668 1.014564 GGCCTCACGTAGTTGTCAGC 61.015 60.000 0.00 0.00 41.61 4.26
3355 7669 0.317160 TGGCCTCACGTAGTTGTCAG 59.683 55.000 3.32 0.00 41.61 3.51
3356 7670 0.032952 GTGGCCTCACGTAGTTGTCA 59.967 55.000 3.32 0.00 41.61 3.58
3357 7671 0.669625 GGTGGCCTCACGTAGTTGTC 60.670 60.000 3.32 0.00 41.61 3.18
3359 7673 1.736645 CGGTGGCCTCACGTAGTTG 60.737 63.158 3.32 0.00 41.61 3.16
3360 7674 2.654877 CGGTGGCCTCACGTAGTT 59.345 61.111 3.32 0.00 41.61 2.24
3402 7732 3.434319 GACATGTGGCAGTGGCGG 61.434 66.667 12.58 4.20 42.47 6.13
3403 7733 3.792047 CGACATGTGGCAGTGGCG 61.792 66.667 12.84 12.84 40.86 5.69
3404 7734 2.669569 ACGACATGTGGCAGTGGC 60.670 61.111 10.30 10.30 40.13 5.01
3405 7735 2.382746 CGACGACATGTGGCAGTGG 61.383 63.158 1.15 0.00 0.00 4.00
3406 7736 3.159070 CGACGACATGTGGCAGTG 58.841 61.111 1.15 0.00 0.00 3.66
3446 7776 3.693382 TAGTCATGACGGCGGCGTG 62.693 63.158 42.25 28.56 36.20 5.34
3447 7777 3.445687 TAGTCATGACGGCGGCGT 61.446 61.111 38.13 38.13 36.20 5.68
3448 7778 2.954020 ATGTAGTCATGACGGCGGCG 62.954 60.000 31.06 31.06 36.20 6.46
3449 7779 1.227263 ATGTAGTCATGACGGCGGC 60.227 57.895 19.85 9.67 36.20 6.53
3458 7788 0.465705 CGGTGGCCTCATGTAGTCAT 59.534 55.000 3.32 0.00 34.21 3.06
3459 7789 1.897423 CGGTGGCCTCATGTAGTCA 59.103 57.895 3.32 0.00 0.00 3.41
3460 7790 1.521681 GCGGTGGCCTCATGTAGTC 60.522 63.158 3.32 0.00 0.00 2.59
3461 7791 1.553690 AAGCGGTGGCCTCATGTAGT 61.554 55.000 3.32 0.00 41.24 2.73
3462 7792 0.464036 TAAGCGGTGGCCTCATGTAG 59.536 55.000 3.32 0.00 41.24 2.74
3463 7793 0.177141 GTAAGCGGTGGCCTCATGTA 59.823 55.000 3.32 0.00 41.24 2.29
3464 7794 1.078426 GTAAGCGGTGGCCTCATGT 60.078 57.895 3.32 0.00 41.24 3.21
3465 7795 0.811616 GAGTAAGCGGTGGCCTCATG 60.812 60.000 3.32 0.00 41.24 3.07
3466 7796 1.522569 GAGTAAGCGGTGGCCTCAT 59.477 57.895 3.32 0.00 41.24 2.90
3467 7797 2.656069 GGAGTAAGCGGTGGCCTCA 61.656 63.158 3.32 0.00 41.24 3.86
3468 7798 2.187163 GGAGTAAGCGGTGGCCTC 59.813 66.667 3.32 0.00 41.24 4.70
3469 7799 3.771160 CGGAGTAAGCGGTGGCCT 61.771 66.667 3.32 0.00 41.24 5.19
3471 7801 4.452733 AGCGGAGTAAGCGGTGGC 62.453 66.667 0.00 0.00 40.04 5.01
3472 7802 2.202756 GAGCGGAGTAAGCGGTGG 60.203 66.667 0.00 0.00 40.04 4.61
3473 7803 1.517257 CAGAGCGGAGTAAGCGGTG 60.517 63.158 0.00 0.00 40.04 4.94
3474 7804 1.977544 ACAGAGCGGAGTAAGCGGT 60.978 57.895 0.00 0.00 40.04 5.68
3475 7805 1.517257 CACAGAGCGGAGTAAGCGG 60.517 63.158 0.00 0.00 40.04 5.52
3476 7806 1.517257 CCACAGAGCGGAGTAAGCG 60.517 63.158 0.00 0.00 40.04 4.68
3477 7807 1.811679 GCCACAGAGCGGAGTAAGC 60.812 63.158 0.00 0.00 0.00 3.09
3478 7808 1.153549 GGCCACAGAGCGGAGTAAG 60.154 63.158 0.00 0.00 0.00 2.34
3479 7809 1.911269 TGGCCACAGAGCGGAGTAA 60.911 57.895 0.00 0.00 0.00 2.24
3480 7810 2.283604 TGGCCACAGAGCGGAGTA 60.284 61.111 0.00 0.00 0.00 2.59
3481 7811 4.008933 GTGGCCACAGAGCGGAGT 62.009 66.667 31.23 0.00 0.00 3.85
3482 7812 4.767255 GGTGGCCACAGAGCGGAG 62.767 72.222 35.78 0.00 0.00 4.63
3856 8186 3.909086 GAGTGGCAGAGGTGGTGGC 62.909 68.421 0.00 0.00 40.81 5.01
3857 8187 2.219875 AGAGTGGCAGAGGTGGTGG 61.220 63.158 0.00 0.00 0.00 4.61
3858 8188 1.004080 CAGAGTGGCAGAGGTGGTG 60.004 63.158 0.00 0.00 0.00 4.17
3859 8189 2.888447 GCAGAGTGGCAGAGGTGGT 61.888 63.158 0.00 0.00 0.00 4.16
3860 8190 2.046507 GCAGAGTGGCAGAGGTGG 60.047 66.667 0.00 0.00 0.00 4.61
3861 8191 2.046507 GGCAGAGTGGCAGAGGTG 60.047 66.667 0.00 0.00 43.14 4.00
3862 8192 3.699894 CGGCAGAGTGGCAGAGGT 61.700 66.667 1.12 0.00 43.94 3.85
3887 8217 2.972505 GACGTGTGGCAGTGGTGG 60.973 66.667 0.00 0.00 0.00 4.61
3888 8218 3.337889 CGACGTGTGGCAGTGGTG 61.338 66.667 0.00 0.00 0.00 4.17
3889 8219 3.785189 GACGACGTGTGGCAGTGGT 62.785 63.158 4.58 0.00 32.13 4.16
3890 8220 3.036084 GACGACGTGTGGCAGTGG 61.036 66.667 4.58 0.00 0.00 4.00
3891 8221 3.394874 CGACGACGTGTGGCAGTG 61.395 66.667 4.58 0.00 34.56 3.66
3947 8277 4.379143 TCGCACAGTCGTCGACGG 62.379 66.667 35.05 22.53 37.67 4.79
3948 8278 2.865603 CTCGCACAGTCGTCGACG 60.866 66.667 31.30 31.30 37.67 5.12
3949 8279 2.502080 CCTCGCACAGTCGTCGAC 60.502 66.667 17.70 17.70 0.00 4.20
3950 8280 4.400109 GCCTCGCACAGTCGTCGA 62.400 66.667 0.00 0.00 0.00 4.20
3952 8282 4.357947 TGGCCTCGCACAGTCGTC 62.358 66.667 3.32 0.00 0.00 4.20
3953 8283 4.664677 GTGGCCTCGCACAGTCGT 62.665 66.667 3.32 0.00 0.00 4.34
3979 8309 3.449227 TAGGTGTCGGCAGAGCGG 61.449 66.667 0.00 0.00 0.00 5.52
3980 8310 2.202623 GTAGGTGTCGGCAGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
3981 8311 2.184579 GGTAGGTGTCGGCAGAGC 59.815 66.667 0.00 0.00 0.00 4.09
3982 8312 2.490217 CGGTAGGTGTCGGCAGAG 59.510 66.667 0.00 0.00 0.00 3.35
3983 8313 3.755628 GCGGTAGGTGTCGGCAGA 61.756 66.667 0.00 0.00 0.00 4.26
3984 8314 3.760035 AGCGGTAGGTGTCGGCAG 61.760 66.667 0.00 0.00 34.40 4.85
3985 8315 4.063967 CAGCGGTAGGTGTCGGCA 62.064 66.667 0.00 0.00 40.71 5.69
3987 8317 3.760035 AGCAGCGGTAGGTGTCGG 61.760 66.667 0.00 0.00 46.77 4.79
3988 8318 2.507102 CAGCAGCGGTAGGTGTCG 60.507 66.667 7.70 0.00 46.77 4.35
3989 8319 2.815647 GCAGCAGCGGTAGGTGTC 60.816 66.667 14.43 6.55 46.77 3.67
3990 8320 4.394712 GGCAGCAGCGGTAGGTGT 62.395 66.667 14.43 0.00 46.77 4.16
4037 8367 3.530104 CGCGTAGTCGTTGACGGC 61.530 66.667 0.00 0.00 45.56 5.68
4038 8368 1.862147 CTCGCGTAGTCGTTGACGG 60.862 63.158 5.77 0.00 39.46 4.79
4039 8369 1.862147 CCTCGCGTAGTCGTTGACG 60.862 63.158 5.77 0.00 41.97 4.35
4040 8370 2.150837 GCCTCGCGTAGTCGTTGAC 61.151 63.158 5.77 0.00 39.49 3.18
4041 8371 2.177531 GCCTCGCGTAGTCGTTGA 59.822 61.111 5.77 0.00 39.49 3.18
4042 8372 2.879462 GGCCTCGCGTAGTCGTTG 60.879 66.667 5.77 0.00 39.49 4.10
4043 8373 3.367743 TGGCCTCGCGTAGTCGTT 61.368 61.111 5.77 0.00 39.49 3.85
4044 8374 4.112341 GTGGCCTCGCGTAGTCGT 62.112 66.667 5.77 0.00 39.49 4.34
4045 8375 4.849329 GGTGGCCTCGCGTAGTCG 62.849 72.222 5.77 0.00 40.37 4.18
4046 8376 4.849329 CGGTGGCCTCGCGTAGTC 62.849 72.222 5.77 0.00 0.00 2.59
4048 8378 4.849329 GACGGTGGCCTCGCGTAG 62.849 72.222 17.38 1.91 0.00 3.51
4141 8471 4.793353 GCATATTAGTGACAGAGACGGGAC 60.793 50.000 0.00 0.00 0.00 4.46
4151 8481 0.107831 GGGCCCGCATATTAGTGACA 59.892 55.000 5.69 0.00 0.00 3.58
4160 8490 0.184933 AAAAGCATAGGGCCCGCATA 59.815 50.000 18.44 3.36 46.50 3.14
4214 8544 6.294508 CCCGTAAACATCATCCCATAAAATCC 60.295 42.308 0.00 0.00 0.00 3.01
4222 8552 2.574369 AGTTCCCGTAAACATCATCCCA 59.426 45.455 0.74 0.00 0.00 4.37
4254 8584 8.589701 AAATTTATGGGAAGTTTTCGGATAGT 57.410 30.769 0.00 0.00 0.00 2.12
4258 8588 8.301002 CAGTAAAATTTATGGGAAGTTTTCGGA 58.699 33.333 0.00 0.00 30.54 4.55
4259 8589 7.544217 CCAGTAAAATTTATGGGAAGTTTTCGG 59.456 37.037 8.47 0.00 30.54 4.30
4260 8590 8.301002 TCCAGTAAAATTTATGGGAAGTTTTCG 58.699 33.333 13.95 0.00 33.45 3.46
4262 8592 9.942850 CATCCAGTAAAATTTATGGGAAGTTTT 57.057 29.630 13.95 0.00 33.45 2.43
4264 8594 8.664669 ACATCCAGTAAAATTTATGGGAAGTT 57.335 30.769 13.95 0.00 33.45 2.66
4291 8630 4.725490 CAGTTCCAAGAGTTCCCCTAAAA 58.275 43.478 0.00 0.00 0.00 1.52
4310 8649 7.661536 TGATCCTAATTGTACTTAGAGCAGT 57.338 36.000 3.97 0.00 31.58 4.40
4352 8691 9.020731 ACGGGTGAAGTTCATTTCTTATATTTT 57.979 29.630 9.18 0.00 0.00 1.82
4354 8693 8.575649 AACGGGTGAAGTTCATTTCTTATATT 57.424 30.769 9.18 0.00 0.00 1.28
4355 8694 8.209917 GAACGGGTGAAGTTCATTTCTTATAT 57.790 34.615 9.18 0.00 45.21 0.86
4356 8695 7.605410 GAACGGGTGAAGTTCATTTCTTATA 57.395 36.000 9.18 0.00 45.21 0.98
4378 8792 3.694072 CCAAATGGAGCGTTATTGGAGAA 59.306 43.478 0.00 0.00 42.46 2.87
4385 8802 3.560636 ACTAGCCAAATGGAGCGTTAT 57.439 42.857 2.98 0.00 37.39 1.89
4386 8803 3.431207 GGTACTAGCCAAATGGAGCGTTA 60.431 47.826 2.98 0.00 37.39 3.18
4389 8806 1.134521 TGGTACTAGCCAAATGGAGCG 60.135 52.381 2.98 0.00 35.25 5.03
4407 8824 9.934190 CTGTGGTTTATTTTCTTTCATTTTTGG 57.066 29.630 0.00 0.00 0.00 3.28
4408 8825 9.934190 CCTGTGGTTTATTTTCTTTCATTTTTG 57.066 29.630 0.00 0.00 0.00 2.44
4409 8826 8.620416 GCCTGTGGTTTATTTTCTTTCATTTTT 58.380 29.630 0.00 0.00 0.00 1.94
4410 8827 7.772757 TGCCTGTGGTTTATTTTCTTTCATTTT 59.227 29.630 0.00 0.00 0.00 1.82
4411 8828 7.278875 TGCCTGTGGTTTATTTTCTTTCATTT 58.721 30.769 0.00 0.00 0.00 2.32
4412 8829 6.825610 TGCCTGTGGTTTATTTTCTTTCATT 58.174 32.000 0.00 0.00 0.00 2.57
4413 8830 6.418057 TGCCTGTGGTTTATTTTCTTTCAT 57.582 33.333 0.00 0.00 0.00 2.57
4414 8831 5.860941 TGCCTGTGGTTTATTTTCTTTCA 57.139 34.783 0.00 0.00 0.00 2.69
4415 8832 6.045955 TGTTGCCTGTGGTTTATTTTCTTTC 58.954 36.000 0.00 0.00 0.00 2.62
4416 8833 5.983540 TGTTGCCTGTGGTTTATTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
4417 8834 5.600696 CTGTTGCCTGTGGTTTATTTTCTT 58.399 37.500 0.00 0.00 0.00 2.52
4418 8835 4.501400 GCTGTTGCCTGTGGTTTATTTTCT 60.501 41.667 0.00 0.00 0.00 2.52
4419 8836 3.740832 GCTGTTGCCTGTGGTTTATTTTC 59.259 43.478 0.00 0.00 0.00 2.29
4420 8837 3.133721 TGCTGTTGCCTGTGGTTTATTTT 59.866 39.130 0.00 0.00 38.71 1.82
4421 8838 2.697751 TGCTGTTGCCTGTGGTTTATTT 59.302 40.909 0.00 0.00 38.71 1.40
4422 8839 2.315176 TGCTGTTGCCTGTGGTTTATT 58.685 42.857 0.00 0.00 38.71 1.40
4423 8840 1.993956 TGCTGTTGCCTGTGGTTTAT 58.006 45.000 0.00 0.00 38.71 1.40
4424 8841 1.885887 GATGCTGTTGCCTGTGGTTTA 59.114 47.619 0.00 0.00 38.71 2.01
4425 8842 0.675633 GATGCTGTTGCCTGTGGTTT 59.324 50.000 0.00 0.00 38.71 3.27
4426 8843 0.467844 TGATGCTGTTGCCTGTGGTT 60.468 50.000 0.00 0.00 38.71 3.67
4427 8844 1.151221 TGATGCTGTTGCCTGTGGT 59.849 52.632 0.00 0.00 38.71 4.16
4428 8845 0.892358 AGTGATGCTGTTGCCTGTGG 60.892 55.000 0.00 0.00 38.71 4.17
4429 8846 0.240145 CAGTGATGCTGTTGCCTGTG 59.760 55.000 0.00 0.00 40.27 3.66
4430 8847 0.109153 TCAGTGATGCTGTTGCCTGT 59.891 50.000 0.00 0.00 45.23 4.00
4431 8848 1.460504 ATCAGTGATGCTGTTGCCTG 58.539 50.000 4.39 0.00 45.23 4.85
4432 8849 2.636830 GTATCAGTGATGCTGTTGCCT 58.363 47.619 16.15 0.00 45.23 4.75
4433 8850 1.328680 CGTATCAGTGATGCTGTTGCC 59.671 52.381 16.15 0.00 45.23 4.52
4434 8851 2.270923 TCGTATCAGTGATGCTGTTGC 58.729 47.619 16.15 0.00 45.23 4.17
4435 8852 3.774066 TCTCGTATCAGTGATGCTGTTG 58.226 45.455 16.15 1.95 45.23 3.33
4443 8897 5.825151 AGATCTCATGTTCTCGTATCAGTGA 59.175 40.000 0.00 0.00 0.00 3.41
4615 9071 2.307496 TCCTAGGTCGTTTGGGTGTA 57.693 50.000 9.08 0.00 0.00 2.90
4636 9092 4.015872 TCCTACCCTCATGTGTGTTTTC 57.984 45.455 0.00 0.00 0.00 2.29
4653 9109 6.170846 AGTTTCTTCCTCGTTTCTTTCCTA 57.829 37.500 0.00 0.00 0.00 2.94
4661 9117 4.335594 CACTGGAAAGTTTCTTCCTCGTTT 59.664 41.667 15.05 0.00 44.57 3.60
4689 9145 1.132453 GCGAAAGAAGGAATTTCCCCG 59.868 52.381 11.92 7.48 37.19 5.73
4721 9177 1.622232 GAAGAAGCCAAGCGATTTGC 58.378 50.000 0.49 0.49 46.98 3.68
4722 9178 1.815003 AGGAAGAAGCCAAGCGATTTG 59.185 47.619 0.00 0.00 36.50 2.32
4723 9179 2.206576 AGGAAGAAGCCAAGCGATTT 57.793 45.000 0.00 0.00 0.00 2.17
4724 9180 1.815003 CAAGGAAGAAGCCAAGCGATT 59.185 47.619 0.00 0.00 0.00 3.34
4742 9198 4.566278 CCAGATGTTTGAGGACAGGATCAA 60.566 45.833 0.00 0.00 33.73 2.57
4748 9204 4.582869 TGAATCCAGATGTTTGAGGACAG 58.417 43.478 0.00 0.00 32.04 3.51
4767 9223 6.659242 AGTCTTTGAAAACCTTCAGACTTGAA 59.341 34.615 4.71 0.00 41.10 2.69
4768 9224 6.094048 CAGTCTTTGAAAACCTTCAGACTTGA 59.906 38.462 6.91 0.00 41.10 3.02
4769 9225 6.261118 CAGTCTTTGAAAACCTTCAGACTTG 58.739 40.000 6.91 2.26 41.10 3.16
4770 9226 5.358160 CCAGTCTTTGAAAACCTTCAGACTT 59.642 40.000 6.91 0.00 41.10 3.01
4771 9227 4.884164 CCAGTCTTTGAAAACCTTCAGACT 59.116 41.667 4.71 4.71 43.02 3.24
4772 9228 4.498177 GCCAGTCTTTGAAAACCTTCAGAC 60.498 45.833 0.00 0.00 42.48 3.51
4773 9229 3.632145 GCCAGTCTTTGAAAACCTTCAGA 59.368 43.478 0.00 0.00 42.48 3.27
4774 9230 3.633986 AGCCAGTCTTTGAAAACCTTCAG 59.366 43.478 0.00 0.00 42.48 3.02
4775 9231 3.631250 AGCCAGTCTTTGAAAACCTTCA 58.369 40.909 0.00 0.00 39.87 3.02
4776 9232 4.142160 ACAAGCCAGTCTTTGAAAACCTTC 60.142 41.667 0.00 0.00 31.27 3.46
4777 9233 3.769300 ACAAGCCAGTCTTTGAAAACCTT 59.231 39.130 0.00 0.00 31.27 3.50
4778 9234 3.365472 ACAAGCCAGTCTTTGAAAACCT 58.635 40.909 0.00 0.00 31.27 3.50
4779 9235 3.801114 ACAAGCCAGTCTTTGAAAACC 57.199 42.857 0.00 0.00 31.27 3.27
4780 9236 4.112634 GGAACAAGCCAGTCTTTGAAAAC 58.887 43.478 0.00 0.00 31.27 2.43
4781 9237 4.023291 AGGAACAAGCCAGTCTTTGAAAA 58.977 39.130 0.00 0.00 31.27 2.29
4782 9238 3.631250 AGGAACAAGCCAGTCTTTGAAA 58.369 40.909 0.00 0.00 31.27 2.69
4783 9239 3.297134 AGGAACAAGCCAGTCTTTGAA 57.703 42.857 0.00 0.00 31.27 2.69
4784 9240 3.297134 AAGGAACAAGCCAGTCTTTGA 57.703 42.857 0.00 0.00 31.27 2.69
4785 9241 3.243535 GGAAAGGAACAAGCCAGTCTTTG 60.244 47.826 0.00 0.00 31.27 2.77
4786 9242 2.959030 GGAAAGGAACAAGCCAGTCTTT 59.041 45.455 0.00 0.00 31.27 2.52
4787 9243 2.175715 AGGAAAGGAACAAGCCAGTCTT 59.824 45.455 0.00 0.00 34.78 3.01
4788 9244 1.777272 AGGAAAGGAACAAGCCAGTCT 59.223 47.619 0.00 0.00 0.00 3.24
4789 9245 2.278332 AGGAAAGGAACAAGCCAGTC 57.722 50.000 0.00 0.00 0.00 3.51
4790 9246 2.587522 GAAGGAAAGGAACAAGCCAGT 58.412 47.619 0.00 0.00 0.00 4.00
4791 9247 1.889170 GGAAGGAAAGGAACAAGCCAG 59.111 52.381 0.00 0.00 0.00 4.85
4792 9248 1.216678 TGGAAGGAAAGGAACAAGCCA 59.783 47.619 0.00 0.00 0.00 4.75
4793 9249 1.995376 TGGAAGGAAAGGAACAAGCC 58.005 50.000 0.00 0.00 0.00 4.35
4794 9250 4.035675 CGATATGGAAGGAAAGGAACAAGC 59.964 45.833 0.00 0.00 0.00 4.01
4795 9251 5.294552 GTCGATATGGAAGGAAAGGAACAAG 59.705 44.000 0.00 0.00 0.00 3.16
4813 9269 5.706833 TGTAATATTGGCCGTCTAGTCGATA 59.293 40.000 11.05 1.52 0.00 2.92
4820 9276 3.068448 TCGCTTGTAATATTGGCCGTCTA 59.932 43.478 0.00 0.00 0.00 2.59
4826 9282 6.908284 TCGTTTAATTCGCTTGTAATATTGGC 59.092 34.615 0.00 0.00 0.00 4.52
4859 9315 4.211920 TGTGAAAGGTTGTAGGGGAAAAG 58.788 43.478 0.00 0.00 0.00 2.27
4888 9344 2.203294 GTGGAGCCGTGGTGGTTT 60.203 61.111 0.00 0.00 41.21 3.27
4901 9357 8.153221 TCCTAATAATAGTTTCAGGTTGTGGA 57.847 34.615 0.00 0.00 0.00 4.02
4906 9362 9.421399 CCCAATTCCTAATAATAGTTTCAGGTT 57.579 33.333 0.00 0.00 0.00 3.50
4946 9402 3.206964 GCTATCCTGAACTAGGCAAACC 58.793 50.000 0.00 0.00 46.87 3.27
4947 9403 3.206964 GGCTATCCTGAACTAGGCAAAC 58.793 50.000 0.00 0.00 46.87 2.93
4948 9404 2.172717 GGGCTATCCTGAACTAGGCAAA 59.827 50.000 0.00 0.00 46.87 3.68
4949 9405 1.768870 GGGCTATCCTGAACTAGGCAA 59.231 52.381 0.00 0.00 46.87 4.52
4950 9406 1.062121 AGGGCTATCCTGAACTAGGCA 60.062 52.381 0.00 0.00 46.07 4.75
4951 9407 1.723288 AGGGCTATCCTGAACTAGGC 58.277 55.000 0.00 0.00 46.07 3.93
4971 9427 7.498900 TGGAGTGCTGTAATTAACATAATCTGG 59.501 37.037 0.00 0.00 37.50 3.86
5003 9461 3.087031 CACAGGAGAATGCCAATCACTT 58.913 45.455 0.00 0.00 0.00 3.16
5022 9480 2.743636 TAGCTTCTGTAGGCACACAC 57.256 50.000 0.00 0.00 0.00 3.82
5023 9481 2.168521 GGATAGCTTCTGTAGGCACACA 59.831 50.000 0.00 0.00 0.00 3.72
5029 9487 2.683768 ACTGGGGATAGCTTCTGTAGG 58.316 52.381 0.00 0.00 0.00 3.18
5052 9510 2.424601 CCTTGCTCATTGTACATGTGGG 59.575 50.000 9.11 0.00 0.00 4.61
5153 9635 8.702163 CCATTTACTTCAACATAAAATGGGTC 57.298 34.615 14.48 0.00 46.67 4.46
5165 10891 7.218204 GCAACGTCATTATCCATTTACTTCAAC 59.782 37.037 0.00 0.00 0.00 3.18
5302 11032 1.670674 GGTCGTTGGCTCGTATCACAA 60.671 52.381 3.16 0.00 0.00 3.33
5311 11041 1.576421 CTTTGCTGGTCGTTGGCTC 59.424 57.895 0.00 0.00 0.00 4.70
5346 11076 0.899720 GACGTGGATGGGGTACTCAA 59.100 55.000 0.00 0.00 0.00 3.02
5405 11166 6.233434 GGTCAATATGCATGATGAAGTAGGA 58.767 40.000 10.16 0.00 0.00 2.94
5412 11173 3.758425 CTGGGGTCAATATGCATGATGA 58.242 45.455 10.16 10.69 0.00 2.92
5435 11196 5.912396 TGCGCAAAATAAAAGTAGTTGAGTG 59.088 36.000 8.16 0.00 0.00 3.51
5445 11206 5.444481 CCCGAGAAATTGCGCAAAATAAAAG 60.444 40.000 28.81 15.16 0.00 2.27
5450 11211 1.404047 CCCCGAGAAATTGCGCAAAAT 60.404 47.619 28.81 18.80 0.00 1.82
5456 11217 3.089784 CGTCCCCGAGAAATTGCG 58.910 61.111 0.00 0.00 35.63 4.85
5511 11278 2.677875 CCTGAAGGTTGCAGCCCC 60.678 66.667 16.95 9.24 32.06 5.80
5707 11477 6.412072 CGTTCTTGTTGAGCTCTTTAAGTTTG 59.588 38.462 16.19 6.69 0.00 2.93
5711 11481 5.907197 TCGTTCTTGTTGAGCTCTTTAAG 57.093 39.130 16.19 15.02 0.00 1.85
5714 11484 4.212214 GTCATCGTTCTTGTTGAGCTCTTT 59.788 41.667 16.19 0.00 0.00 2.52
5717 11487 2.413453 GGTCATCGTTCTTGTTGAGCTC 59.587 50.000 6.82 6.82 34.71 4.09
5831 11601 2.758423 GCACCTTGGGTATTTCGGATTT 59.242 45.455 0.00 0.00 32.11 2.17
5905 11675 1.386533 CTGGATGCACCTTCATGTCC 58.613 55.000 0.00 0.00 39.86 4.02
5970 11740 1.338674 TGATCCCTCGTTTGCAATCGT 60.339 47.619 24.68 9.27 0.00 3.73
5972 11742 2.611292 CTCTGATCCCTCGTTTGCAATC 59.389 50.000 0.00 0.00 0.00 2.67
6125 14145 6.828785 AGGCAAAAACTACATATGTTAGAGGG 59.171 38.462 14.77 0.58 0.00 4.30
6133 14153 4.949856 ACCTGGAGGCAAAAACTACATATG 59.050 41.667 0.00 0.00 39.32 1.78
6164 14205 2.106511 TGCTCACCTATTGATAAGGGCC 59.893 50.000 0.00 0.00 38.54 5.80
6174 14215 2.471255 GCAGCGTTGCTCACCTATT 58.529 52.632 17.71 0.00 46.95 1.73
6202 14243 1.949449 AGGAGGGTGGAGGGATCCT 60.949 63.158 12.58 0.00 35.53 3.24
6203 14244 1.460497 GAGGAGGGTGGAGGGATCC 60.460 68.421 1.92 1.92 0.00 3.36
6204 14245 1.460497 GGAGGAGGGTGGAGGGATC 60.460 68.421 0.00 0.00 0.00 3.36
6205 14246 1.541168 AAGGAGGAGGGTGGAGGGAT 61.541 60.000 0.00 0.00 0.00 3.85
6206 14247 2.182858 GAAGGAGGAGGGTGGAGGGA 62.183 65.000 0.00 0.00 0.00 4.20
6207 14248 1.690985 GAAGGAGGAGGGTGGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
6208 14249 0.980231 CAGAAGGAGGAGGGTGGAGG 60.980 65.000 0.00 0.00 0.00 4.30
6209 14250 0.252467 ACAGAAGGAGGAGGGTGGAG 60.252 60.000 0.00 0.00 0.00 3.86
6210 14251 0.193574 AACAGAAGGAGGAGGGTGGA 59.806 55.000 0.00 0.00 0.00 4.02
6211 14252 1.068121 AAACAGAAGGAGGAGGGTGG 58.932 55.000 0.00 0.00 0.00 4.61
6212 14253 4.576330 ATTAAACAGAAGGAGGAGGGTG 57.424 45.455 0.00 0.00 0.00 4.61
6213 14254 5.074515 TGAAATTAAACAGAAGGAGGAGGGT 59.925 40.000 0.00 0.00 0.00 4.34
6214 14255 5.416013 GTGAAATTAAACAGAAGGAGGAGGG 59.584 44.000 0.00 0.00 0.00 4.30
6215 14256 6.003950 TGTGAAATTAAACAGAAGGAGGAGG 58.996 40.000 0.00 0.00 0.00 4.30
6216 14257 7.391554 TGATGTGAAATTAAACAGAAGGAGGAG 59.608 37.037 0.38 0.00 0.00 3.69
6217 14258 7.230747 TGATGTGAAATTAAACAGAAGGAGGA 58.769 34.615 0.38 0.00 0.00 3.71
6218 14259 7.452880 TGATGTGAAATTAAACAGAAGGAGG 57.547 36.000 0.38 0.00 0.00 4.30
6219 14260 8.786898 TCTTGATGTGAAATTAAACAGAAGGAG 58.213 33.333 11.35 0.00 0.00 3.69
6286 14349 9.130312 CTCGATTAGTAAGTAGAATGCCAATAC 57.870 37.037 0.00 0.00 0.00 1.89
6320 14404 7.530426 AGCAAGAATTTTTATGTGGAGAAGT 57.470 32.000 0.00 0.00 0.00 3.01
6326 14410 8.816640 AGTAACAAGCAAGAATTTTTATGTGG 57.183 30.769 0.00 0.00 0.00 4.17
6328 14412 8.349983 ACGAGTAACAAGCAAGAATTTTTATGT 58.650 29.630 0.00 0.00 0.00 2.29
6332 14416 9.744468 AATTACGAGTAACAAGCAAGAATTTTT 57.256 25.926 0.00 0.00 0.00 1.94
6338 14422 8.821147 TTCTTAATTACGAGTAACAAGCAAGA 57.179 30.769 11.38 7.69 0.00 3.02
6386 14487 8.740123 TTAAATGTAAGAGTTCAAGTTGGACA 57.260 30.769 16.71 4.21 0.00 4.02
6418 14520 6.071616 TGGTTTCAAATAGTTCAAGGGCATAC 60.072 38.462 0.00 0.00 0.00 2.39
6422 14524 4.864704 TGGTTTCAAATAGTTCAAGGGC 57.135 40.909 0.00 0.00 0.00 5.19
6423 14525 8.675705 AAAATTGGTTTCAAATAGTTCAAGGG 57.324 30.769 0.00 0.00 36.36 3.95
6481 14601 6.867662 ATCAACAAAGTTCACTGAAGTAGG 57.132 37.500 0.00 0.00 0.00 3.18
6482 14602 9.046296 AGTAATCAACAAAGTTCACTGAAGTAG 57.954 33.333 0.00 0.00 0.00 2.57
6488 14608 6.662616 CAGGAGTAATCAACAAAGTTCACTG 58.337 40.000 0.00 0.00 0.00 3.66
6524 14646 5.776173 ACTATTGTACGCTTGCTCTAGAT 57.224 39.130 0.00 0.00 0.00 1.98
6540 14662 6.038985 CGTCTATCATGGGAGCATACTATTG 58.961 44.000 0.00 0.00 0.00 1.90
6545 14667 4.521130 TTCGTCTATCATGGGAGCATAC 57.479 45.455 0.00 0.00 0.00 2.39
6550 14675 8.783833 ATTATTCATTTCGTCTATCATGGGAG 57.216 34.615 0.00 0.00 0.00 4.30
6578 14704 8.961294 GGTATATACCTACAAAGATGTACACG 57.039 38.462 22.56 0.00 43.10 4.49
6664 14795 9.624697 CTTTCCGATGTTTGAATTTCTTATGAA 57.375 29.630 0.00 0.00 0.00 2.57
6665 14796 7.754924 GCTTTCCGATGTTTGAATTTCTTATGA 59.245 33.333 0.00 0.00 0.00 2.15
6686 14817 1.800586 TGTCTCAACATCTGCGCTTTC 59.199 47.619 9.73 0.00 0.00 2.62
6790 14921 2.535331 CCTTCTCAAGCTCGTCTAAGC 58.465 52.381 0.00 0.00 42.82 3.09
6884 15015 2.602257 TGGCTACAACATGGAGATCG 57.398 50.000 0.00 0.00 26.39 3.69
6989 15120 5.623673 GCAACAACCATAGAGTTTTACAACG 59.376 40.000 0.00 0.00 38.03 4.10
7493 15631 2.245159 TGCGGATCTAGAATTGCTGG 57.755 50.000 12.73 0.00 0.00 4.85
7607 15745 4.319177 CCTTCGAGTTTGATCTCCACTTT 58.681 43.478 0.00 0.00 0.00 2.66
7659 15797 8.906867 CAGTCCATGGACAATTTCTTACATTAT 58.093 33.333 39.38 15.63 46.76 1.28
7782 15920 2.786777 ACAAATGCACTGATGAGCTCA 58.213 42.857 20.79 20.79 0.00 4.26
7800 15938 7.397892 TCTCCAAACTGTGATGTTTAAAACA 57.602 32.000 0.00 0.00 46.94 2.83
7830 15970 4.020039 TGCAGAAGGGAAATGAATGCAAAT 60.020 37.500 0.00 0.00 39.08 2.32
7971 16152 3.619038 CAGCGACCTCCTTACATTCTTTC 59.381 47.826 0.00 0.00 0.00 2.62
7983 16165 2.227089 ATCGGAACACAGCGACCTCC 62.227 60.000 0.00 0.00 0.00 4.30
7987 16169 2.493713 ATCTATCGGAACACAGCGAC 57.506 50.000 0.00 0.00 0.00 5.19
7993 16175 9.922305 CAAATAAAGAAGAATCTATCGGAACAC 57.078 33.333 0.00 0.00 33.77 3.32
8003 16185 9.147732 AGGGAAAACACAAATAAAGAAGAATCT 57.852 29.630 0.00 0.00 37.57 2.40
8033 16215 8.763984 TTTAGATAACTCCAGGTTAGAGTAGG 57.236 38.462 0.00 0.00 43.77 3.18
8038 16220 7.676893 TGACCTTTTAGATAACTCCAGGTTAGA 59.323 37.037 0.00 0.00 42.74 2.10
8094 16285 1.742831 TGAAGGAACACACACACTTGC 59.257 47.619 0.00 0.00 0.00 4.01
8109 16300 8.043710 AGTCTATAACATTTTGGAGTCTGAAGG 58.956 37.037 0.00 0.00 0.00 3.46
8290 16488 4.237724 GGTTGCTTAAGGTCAGCATTTTC 58.762 43.478 4.29 0.00 46.62 2.29
8294 16492 2.584835 TGGTTGCTTAAGGTCAGCAT 57.415 45.000 4.29 0.00 46.62 3.79
8354 16552 1.442017 GTGGCGTGCGGACAATTTC 60.442 57.895 8.11 0.00 33.40 2.17
8355 16553 1.729470 TTGTGGCGTGCGGACAATTT 61.729 50.000 8.11 0.00 33.40 1.82
8356 16554 2.128853 CTTGTGGCGTGCGGACAATT 62.129 55.000 8.11 0.00 33.40 2.32
8357 16555 2.593148 TTGTGGCGTGCGGACAAT 60.593 55.556 8.11 0.00 33.40 2.71
8358 16556 3.276091 CTTGTGGCGTGCGGACAA 61.276 61.111 8.11 7.55 33.40 3.18
8360 16558 4.980805 TCCTTGTGGCGTGCGGAC 62.981 66.667 0.00 0.00 0.00 4.79
8361 16559 4.015406 ATCCTTGTGGCGTGCGGA 62.015 61.111 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.