Multiple sequence alignment - TraesCS3A01G527400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G527400 chr3A 100.000 3200 0 0 1 3200 741846475 741843276 0.000000e+00 5910.0
1 TraesCS3A01G527400 chr3A 80.067 893 144 17 941 1817 745854281 745853407 1.620000e-177 632.0
2 TraesCS3A01G527400 chr3B 90.147 2385 115 37 627 2978 818785370 818787667 0.000000e+00 2992.0
3 TraesCS3A01G527400 chr3B 77.861 1066 167 37 781 1818 829935163 829936187 5.910000e-167 597.0
4 TraesCS3A01G527400 chr3B 78.682 971 148 32 871 1818 830320704 830321638 2.750000e-165 592.0
5 TraesCS3A01G527400 chr3B 78.609 963 149 33 871 1818 829817259 829818179 4.600000e-163 584.0
6 TraesCS3A01G527400 chr3B 87.601 371 44 2 258 627 17252989 17253358 2.280000e-116 429.0
7 TraesCS3A01G527400 chr3B 80.714 560 86 16 767 1314 829742141 829742690 1.780000e-112 416.0
8 TraesCS3A01G527400 chr3B 80.078 512 81 8 1328 1818 830611153 830611664 8.440000e-96 361.0
9 TraesCS3A01G527400 chr3B 94.146 205 11 1 2981 3185 62672440 62672643 8.620000e-81 311.0
10 TraesCS3A01G527400 chr3B 89.947 189 19 0 60 248 818785175 818785363 8.870000e-61 244.0
11 TraesCS3A01G527400 chr3B 79.325 237 40 4 1953 2183 829818140 829818373 1.190000e-34 158.0
12 TraesCS3A01G527400 chr3B 78.903 237 41 4 1953 2183 829987154 829987387 5.530000e-33 152.0
13 TraesCS3A01G527400 chr3B 78.903 237 41 4 1953 2183 830487549 830487782 5.530000e-33 152.0
14 TraesCS3A01G527400 chr3B 92.727 55 4 0 161 215 752044753 752044807 2.650000e-11 80.5
15 TraesCS3A01G527400 chr3D 94.229 901 38 11 2084 2978 608748882 608747990 0.000000e+00 1363.0
16 TraesCS3A01G527400 chr3D 91.254 949 40 15 630 1572 608749794 608748883 0.000000e+00 1253.0
17 TraesCS3A01G527400 chr3D 89.276 373 35 5 258 628 573992811 573993180 2.250000e-126 462.0
18 TraesCS3A01G527400 chr3D 88.315 368 42 1 261 628 43675060 43674694 1.050000e-119 440.0
19 TraesCS3A01G527400 chr3D 93.427 213 13 1 2981 3193 70280435 70280646 6.660000e-82 315.0
20 TraesCS3A01G527400 chr3D 94.886 176 9 0 73 248 608749981 608749806 3.140000e-70 276.0
21 TraesCS3A01G527400 chr3D 80.000 220 38 3 1953 2169 612005060 612005276 1.190000e-34 158.0
22 TraesCS3A01G527400 chrUn 77.955 1066 166 37 781 1818 184582380 184583404 1.270000e-168 603.0
23 TraesCS3A01G527400 chrUn 78.714 949 145 33 885 1818 184613754 184614660 5.950000e-162 580.0
24 TraesCS3A01G527400 chrUn 78.906 512 87 8 1328 1818 204467111 204467622 8.560000e-86 327.0
25 TraesCS3A01G527400 chrUn 78.770 504 90 14 1328 1818 202221035 202221534 3.980000e-84 322.0
26 TraesCS3A01G527400 chrUn 78.842 501 89 14 1331 1818 232414533 232414037 3.980000e-84 322.0
27 TraesCS3A01G527400 chrUn 78.782 509 87 8 1331 1818 232417005 232416497 3.980000e-84 322.0
28 TraesCS3A01G527400 chrUn 78.842 501 89 14 1331 1818 396855768 396855272 3.980000e-84 322.0
29 TraesCS3A01G527400 chrUn 79.747 237 39 4 1953 2183 184614621 184614854 2.550000e-36 163.0
30 TraesCS3A01G527400 chrUn 79.747 237 39 5 1953 2183 410134262 410134029 2.550000e-36 163.0
31 TraesCS3A01G527400 chrUn 79.325 237 40 5 1953 2183 344798067 344797834 1.190000e-34 158.0
32 TraesCS3A01G527400 chrUn 78.481 237 42 4 1953 2183 202221495 202221728 2.570000e-31 147.0
33 TraesCS3A01G527400 chr6D 88.649 370 42 0 258 627 20346134 20346503 4.870000e-123 451.0
34 TraesCS3A01G527400 chr6D 88.235 374 40 3 256 628 470898281 470898651 8.150000e-121 444.0
35 TraesCS3A01G527400 chr6D 86.979 384 46 3 256 636 319353127 319352745 2.280000e-116 429.0
36 TraesCS3A01G527400 chr2D 87.467 375 42 4 255 626 549926495 549926123 8.200000e-116 427.0
37 TraesCS3A01G527400 chr7D 87.166 374 44 3 258 628 126710091 126710463 3.820000e-114 422.0
38 TraesCS3A01G527400 chr7D 92.593 216 14 2 2980 3195 527466748 527466961 3.100000e-80 309.0
39 TraesCS3A01G527400 chr7A 87.332 371 44 3 258 626 14461080 14460711 3.820000e-114 422.0
40 TraesCS3A01G527400 chr2B 91.630 227 18 1 2969 3195 225229210 225229435 2.400000e-81 313.0
41 TraesCS3A01G527400 chr2B 92.925 212 13 2 2981 3191 27547928 27548138 1.120000e-79 307.0
42 TraesCS3A01G527400 chr5D 93.365 211 12 2 2981 3191 462033721 462033513 8.620000e-81 311.0
43 TraesCS3A01G527400 chr5A 92.488 213 16 0 2981 3193 456461593 456461805 4.010000e-79 305.0
44 TraesCS3A01G527400 chr1B 92.891 211 14 1 2981 3191 643043036 643042827 4.010000e-79 305.0
45 TraesCS3A01G527400 chr1B 91.480 223 15 4 2970 3191 338467717 338467936 1.440000e-78 303.0
46 TraesCS3A01G527400 chr4B 93.878 49 3 0 185 233 671840268 671840220 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G527400 chr3A 741843276 741846475 3199 True 5910.0 5910 100.000000 1 3200 1 chr3A.!!$R1 3199
1 TraesCS3A01G527400 chr3A 745853407 745854281 874 True 632.0 632 80.067000 941 1817 1 chr3A.!!$R2 876
2 TraesCS3A01G527400 chr3B 818785175 818787667 2492 False 1618.0 2992 90.047000 60 2978 2 chr3B.!!$F10 2918
3 TraesCS3A01G527400 chr3B 829935163 829936187 1024 False 597.0 597 77.861000 781 1818 1 chr3B.!!$F5 1037
4 TraesCS3A01G527400 chr3B 830320704 830321638 934 False 592.0 592 78.682000 871 1818 1 chr3B.!!$F7 947
5 TraesCS3A01G527400 chr3B 829742141 829742690 549 False 416.0 416 80.714000 767 1314 1 chr3B.!!$F4 547
6 TraesCS3A01G527400 chr3B 829817259 829818373 1114 False 371.0 584 78.967000 871 2183 2 chr3B.!!$F11 1312
7 TraesCS3A01G527400 chr3B 830611153 830611664 511 False 361.0 361 80.078000 1328 1818 1 chr3B.!!$F9 490
8 TraesCS3A01G527400 chr3D 608747990 608749981 1991 True 964.0 1363 93.456333 73 2978 3 chr3D.!!$R2 2905
9 TraesCS3A01G527400 chrUn 184582380 184583404 1024 False 603.0 603 77.955000 781 1818 1 chrUn.!!$F1 1037
10 TraesCS3A01G527400 chrUn 184613754 184614854 1100 False 371.5 580 79.230500 885 2183 2 chrUn.!!$F3 1298
11 TraesCS3A01G527400 chrUn 204467111 204467622 511 False 327.0 327 78.906000 1328 1818 1 chrUn.!!$F2 490
12 TraesCS3A01G527400 chrUn 232414037 232417005 2968 True 322.0 322 78.812000 1331 1818 2 chrUn.!!$R4 487
13 TraesCS3A01G527400 chrUn 202221035 202221728 693 False 234.5 322 78.625500 1328 2183 2 chrUn.!!$F4 855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 588 0.036590 TAACCACGTTTACCAGCCCC 59.963 55.0 0.00 0.0 0.00 5.80 F
1816 1932 0.103208 CCCCTCCGCGATAGATATGC 59.897 60.0 8.23 0.0 39.76 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2048 0.030195 TCTCCTGCATATCCACCCCA 60.030 55.0 0.0 0.0 0.0 4.96 R
3066 3484 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.0 0.0 0.0 0.0 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.904900 GCGGCGGGTTAGGGCTAC 62.905 72.222 9.78 0.00 0.00 3.58
29 30 4.580551 CGGCGGGTTAGGGCTACG 62.581 72.222 0.00 0.00 0.00 3.51
56 57 4.438346 GGCGACGGATATGTGCTT 57.562 55.556 0.00 0.00 0.00 3.91
57 58 2.690326 GGCGACGGATATGTGCTTT 58.310 52.632 0.00 0.00 0.00 3.51
58 59 0.304705 GGCGACGGATATGTGCTTTG 59.695 55.000 0.00 0.00 0.00 2.77
65 66 4.827692 ACGGATATGTGCTTTGTTAGTCA 58.172 39.130 0.00 0.00 0.00 3.41
71 72 3.213506 TGTGCTTTGTTAGTCATGCTGT 58.786 40.909 0.00 0.00 0.00 4.40
82 83 7.935520 TGTTAGTCATGCTGTAAAAATGAACA 58.064 30.769 0.00 0.00 32.38 3.18
125 126 5.696724 GCGAGAAGCTATATACCACACATTT 59.303 40.000 0.00 0.00 44.04 2.32
126 127 6.346919 GCGAGAAGCTATATACCACACATTTG 60.347 42.308 0.00 0.00 44.04 2.32
196 197 6.922957 TGGTTCACAAAGATAAGATGTTTTGC 59.077 34.615 0.00 0.00 34.69 3.68
197 198 6.922957 GGTTCACAAAGATAAGATGTTTTGCA 59.077 34.615 0.00 0.00 34.69 4.08
248 249 8.700051 ACTGAAATGAGTGAGTAAGCATAGTAT 58.300 33.333 0.00 0.00 0.00 2.12
249 250 8.877808 TGAAATGAGTGAGTAAGCATAGTATG 57.122 34.615 5.73 5.73 0.00 2.39
250 251 8.478066 TGAAATGAGTGAGTAAGCATAGTATGT 58.522 33.333 11.73 0.00 0.00 2.29
251 252 8.879342 AAATGAGTGAGTAAGCATAGTATGTC 57.121 34.615 11.73 4.53 0.00 3.06
252 253 7.831691 ATGAGTGAGTAAGCATAGTATGTCT 57.168 36.000 11.73 6.63 0.00 3.41
253 254 8.926092 ATGAGTGAGTAAGCATAGTATGTCTA 57.074 34.615 11.73 1.35 0.00 2.59
254 255 8.926092 TGAGTGAGTAAGCATAGTATGTCTAT 57.074 34.615 11.73 0.00 39.67 1.98
272 273 8.747538 ATGTCTATATCAAGGTTTTGGTTACC 57.252 34.615 0.00 0.00 34.97 2.85
273 274 7.691213 TGTCTATATCAAGGTTTTGGTTACCA 58.309 34.615 0.00 0.00 38.16 3.25
274 275 7.827236 TGTCTATATCAAGGTTTTGGTTACCAG 59.173 37.037 3.65 0.00 38.16 4.00
275 276 7.827729 GTCTATATCAAGGTTTTGGTTACCAGT 59.172 37.037 3.65 0.00 38.16 4.00
276 277 8.044908 TCTATATCAAGGTTTTGGTTACCAGTC 58.955 37.037 3.65 0.00 38.16 3.51
277 278 4.237976 TCAAGGTTTTGGTTACCAGTCA 57.762 40.909 3.65 0.00 38.16 3.41
278 279 4.601084 TCAAGGTTTTGGTTACCAGTCAA 58.399 39.130 3.65 0.00 38.16 3.18
279 280 5.017490 TCAAGGTTTTGGTTACCAGTCAAA 58.983 37.500 3.65 0.00 38.16 2.69
280 281 5.480772 TCAAGGTTTTGGTTACCAGTCAAAA 59.519 36.000 3.65 0.00 38.16 2.44
281 282 6.155393 TCAAGGTTTTGGTTACCAGTCAAAAT 59.845 34.615 3.65 0.00 40.80 1.82
282 283 6.553953 AGGTTTTGGTTACCAGTCAAAATT 57.446 33.333 3.65 0.00 40.80 1.82
283 284 6.953101 AGGTTTTGGTTACCAGTCAAAATTT 58.047 32.000 3.65 0.00 40.80 1.82
284 285 7.045416 AGGTTTTGGTTACCAGTCAAAATTTC 58.955 34.615 3.65 0.00 40.80 2.17
285 286 6.819146 GGTTTTGGTTACCAGTCAAAATTTCA 59.181 34.615 3.65 0.00 40.80 2.69
286 287 7.334671 GGTTTTGGTTACCAGTCAAAATTTCAA 59.665 33.333 3.65 0.00 40.80 2.69
287 288 8.387354 GTTTTGGTTACCAGTCAAAATTTCAAG 58.613 33.333 3.65 0.00 40.80 3.02
288 289 7.411486 TTGGTTACCAGTCAAAATTTCAAGA 57.589 32.000 3.65 0.00 33.81 3.02
289 290 7.595819 TGGTTACCAGTCAAAATTTCAAGAT 57.404 32.000 0.00 0.00 0.00 2.40
290 291 8.017418 TGGTTACCAGTCAAAATTTCAAGATT 57.983 30.769 0.00 0.00 0.00 2.40
291 292 8.482128 TGGTTACCAGTCAAAATTTCAAGATTT 58.518 29.630 0.00 0.00 0.00 2.17
292 293 9.325198 GGTTACCAGTCAAAATTTCAAGATTTT 57.675 29.630 0.00 0.00 39.21 1.82
294 295 9.541143 TTACCAGTCAAAATTTCAAGATTTTCC 57.459 29.630 0.00 0.00 37.17 3.13
295 296 7.563906 ACCAGTCAAAATTTCAAGATTTTCCA 58.436 30.769 0.00 0.00 37.17 3.53
296 297 8.212995 ACCAGTCAAAATTTCAAGATTTTCCAT 58.787 29.630 0.00 0.00 37.17 3.41
297 298 8.500773 CCAGTCAAAATTTCAAGATTTTCCATG 58.499 33.333 0.00 0.00 37.17 3.66
298 299 8.500773 CAGTCAAAATTTCAAGATTTTCCATGG 58.499 33.333 4.97 4.97 37.17 3.66
299 300 8.212995 AGTCAAAATTTCAAGATTTTCCATGGT 58.787 29.630 12.58 0.00 37.17 3.55
300 301 8.839343 GTCAAAATTTCAAGATTTTCCATGGTT 58.161 29.630 12.58 0.00 37.17 3.67
303 304 8.846943 AAATTTCAAGATTTTCCATGGTTACC 57.153 30.769 12.58 0.00 0.00 2.85
304 305 6.985653 TTTCAAGATTTTCCATGGTTACCA 57.014 33.333 12.58 6.53 38.19 3.25
305 306 5.975693 TCAAGATTTTCCATGGTTACCAC 57.024 39.130 12.58 0.81 35.80 4.16
306 307 4.457603 TCAAGATTTTCCATGGTTACCACG 59.542 41.667 12.58 0.00 35.80 4.94
307 308 4.028993 AGATTTTCCATGGTTACCACGT 57.971 40.909 12.58 0.00 35.80 4.49
308 309 5.168647 AGATTTTCCATGGTTACCACGTA 57.831 39.130 12.58 0.00 35.80 3.57
309 310 5.751586 AGATTTTCCATGGTTACCACGTAT 58.248 37.500 12.58 0.00 35.80 3.06
310 311 6.184789 AGATTTTCCATGGTTACCACGTATT 58.815 36.000 12.58 0.00 35.80 1.89
311 312 6.661805 AGATTTTCCATGGTTACCACGTATTT 59.338 34.615 12.58 0.00 35.80 1.40
312 313 5.883503 TTTCCATGGTTACCACGTATTTC 57.116 39.130 12.58 0.00 35.80 2.17
313 314 3.876341 TCCATGGTTACCACGTATTTCC 58.124 45.455 12.58 0.00 35.80 3.13
314 315 2.610374 CCATGGTTACCACGTATTTCCG 59.390 50.000 6.10 0.00 35.80 4.30
315 316 3.264104 CATGGTTACCACGTATTTCCGT 58.736 45.455 6.10 0.00 42.87 4.69
321 322 3.395630 ACGTATTTCCGTGCCCCT 58.604 55.556 0.00 0.00 40.08 4.79
322 323 1.219935 ACGTATTTCCGTGCCCCTC 59.780 57.895 0.00 0.00 40.08 4.30
323 324 1.881252 CGTATTTCCGTGCCCCTCG 60.881 63.158 0.00 0.00 0.00 4.63
324 325 1.518774 GTATTTCCGTGCCCCTCGA 59.481 57.895 0.00 0.00 0.00 4.04
325 326 0.106149 GTATTTCCGTGCCCCTCGAT 59.894 55.000 0.00 0.00 0.00 3.59
326 327 1.342174 GTATTTCCGTGCCCCTCGATA 59.658 52.381 0.00 0.00 0.00 2.92
327 328 0.834612 ATTTCCGTGCCCCTCGATAA 59.165 50.000 0.00 0.00 0.00 1.75
328 329 0.614294 TTTCCGTGCCCCTCGATAAA 59.386 50.000 0.00 0.00 0.00 1.40
329 330 0.834612 TTCCGTGCCCCTCGATAAAT 59.165 50.000 0.00 0.00 0.00 1.40
330 331 0.834612 TCCGTGCCCCTCGATAAATT 59.165 50.000 0.00 0.00 0.00 1.82
331 332 1.202604 TCCGTGCCCCTCGATAAATTC 60.203 52.381 0.00 0.00 0.00 2.17
332 333 1.226746 CGTGCCCCTCGATAAATTCC 58.773 55.000 0.00 0.00 0.00 3.01
333 334 1.605753 GTGCCCCTCGATAAATTCCC 58.394 55.000 0.00 0.00 0.00 3.97
334 335 1.133915 GTGCCCCTCGATAAATTCCCA 60.134 52.381 0.00 0.00 0.00 4.37
335 336 1.780309 TGCCCCTCGATAAATTCCCAT 59.220 47.619 0.00 0.00 0.00 4.00
336 337 2.983192 TGCCCCTCGATAAATTCCCATA 59.017 45.455 0.00 0.00 0.00 2.74
337 338 3.244770 TGCCCCTCGATAAATTCCCATAC 60.245 47.826 0.00 0.00 0.00 2.39
338 339 3.872630 GCCCCTCGATAAATTCCCATACC 60.873 52.174 0.00 0.00 0.00 2.73
339 340 3.596214 CCCTCGATAAATTCCCATACCG 58.404 50.000 0.00 0.00 0.00 4.02
340 341 3.259876 CCCTCGATAAATTCCCATACCGA 59.740 47.826 0.00 0.00 0.00 4.69
341 342 4.495422 CCTCGATAAATTCCCATACCGAG 58.505 47.826 0.00 0.00 41.06 4.63
342 343 3.921677 TCGATAAATTCCCATACCGAGC 58.078 45.455 0.00 0.00 0.00 5.03
343 344 3.322541 TCGATAAATTCCCATACCGAGCA 59.677 43.478 0.00 0.00 0.00 4.26
344 345 4.062293 CGATAAATTCCCATACCGAGCAA 58.938 43.478 0.00 0.00 0.00 3.91
345 346 4.513692 CGATAAATTCCCATACCGAGCAAA 59.486 41.667 0.00 0.00 0.00 3.68
346 347 5.008217 CGATAAATTCCCATACCGAGCAAAA 59.992 40.000 0.00 0.00 0.00 2.44
347 348 6.459024 CGATAAATTCCCATACCGAGCAAAAA 60.459 38.462 0.00 0.00 0.00 1.94
397 398 9.839589 AATTTAAACGCTCGATTTATAGTAACG 57.160 29.630 0.00 0.00 0.00 3.18
398 399 7.969387 TTAAACGCTCGATTTATAGTAACGT 57.031 32.000 0.00 0.00 0.00 3.99
399 400 9.497030 TTTAAACGCTCGATTTATAGTAACGTA 57.503 29.630 0.00 0.00 0.00 3.57
400 401 9.663904 TTAAACGCTCGATTTATAGTAACGTAT 57.336 29.630 0.00 0.00 0.00 3.06
401 402 7.544511 AACGCTCGATTTATAGTAACGTATG 57.455 36.000 0.00 0.00 0.00 2.39
402 403 6.662616 ACGCTCGATTTATAGTAACGTATGT 58.337 36.000 0.00 0.00 0.00 2.29
403 404 7.796838 ACGCTCGATTTATAGTAACGTATGTA 58.203 34.615 0.00 0.00 0.00 2.29
404 405 7.954248 ACGCTCGATTTATAGTAACGTATGTAG 59.046 37.037 0.00 0.00 0.00 2.74
405 406 7.424738 CGCTCGATTTATAGTAACGTATGTAGG 59.575 40.741 0.00 0.00 0.00 3.18
406 407 8.446273 GCTCGATTTATAGTAACGTATGTAGGA 58.554 37.037 0.00 0.00 0.00 2.94
418 419 9.339492 GTAACGTATGTAGGATCTAATTAGTGC 57.661 37.037 12.19 5.60 0.00 4.40
419 420 6.921914 ACGTATGTAGGATCTAATTAGTGCC 58.078 40.000 12.19 13.58 0.00 5.01
420 421 6.492429 ACGTATGTAGGATCTAATTAGTGCCA 59.508 38.462 20.64 9.37 0.00 4.92
421 422 7.178628 ACGTATGTAGGATCTAATTAGTGCCAT 59.821 37.037 20.64 13.80 0.00 4.40
422 423 8.683615 CGTATGTAGGATCTAATTAGTGCCATA 58.316 37.037 20.64 13.14 0.00 2.74
425 426 8.721133 TGTAGGATCTAATTAGTGCCATAAGA 57.279 34.615 20.64 1.37 0.00 2.10
426 427 8.807118 TGTAGGATCTAATTAGTGCCATAAGAG 58.193 37.037 20.64 0.00 0.00 2.85
427 428 7.863901 AGGATCTAATTAGTGCCATAAGAGT 57.136 36.000 20.64 3.97 0.00 3.24
428 429 8.268878 AGGATCTAATTAGTGCCATAAGAGTT 57.731 34.615 20.64 3.46 0.00 3.01
429 430 8.153550 AGGATCTAATTAGTGCCATAAGAGTTG 58.846 37.037 20.64 0.00 0.00 3.16
430 431 7.389053 GGATCTAATTAGTGCCATAAGAGTTGG 59.611 40.741 12.19 0.00 37.31 3.77
431 432 7.195374 TCTAATTAGTGCCATAAGAGTTGGT 57.805 36.000 12.19 0.00 36.57 3.67
432 433 7.630082 TCTAATTAGTGCCATAAGAGTTGGTT 58.370 34.615 12.19 0.00 36.57 3.67
433 434 6.759497 AATTAGTGCCATAAGAGTTGGTTC 57.241 37.500 0.00 0.00 36.57 3.62
434 435 5.499004 TTAGTGCCATAAGAGTTGGTTCT 57.501 39.130 0.00 0.00 36.57 3.01
435 436 3.679389 AGTGCCATAAGAGTTGGTTCTG 58.321 45.455 0.00 0.00 36.57 3.02
436 437 3.327757 AGTGCCATAAGAGTTGGTTCTGA 59.672 43.478 0.00 0.00 36.57 3.27
437 438 3.437049 GTGCCATAAGAGTTGGTTCTGAC 59.563 47.826 0.00 0.00 36.57 3.51
438 439 2.673368 GCCATAAGAGTTGGTTCTGACG 59.327 50.000 0.00 0.00 36.57 4.35
439 440 3.864921 GCCATAAGAGTTGGTTCTGACGT 60.865 47.826 0.00 0.00 36.57 4.34
440 441 3.679980 CCATAAGAGTTGGTTCTGACGTG 59.320 47.826 0.00 0.00 0.00 4.49
441 442 2.981859 AAGAGTTGGTTCTGACGTGT 57.018 45.000 0.00 0.00 0.00 4.49
442 443 2.981859 AGAGTTGGTTCTGACGTGTT 57.018 45.000 0.00 0.00 0.00 3.32
443 444 2.550978 AGAGTTGGTTCTGACGTGTTG 58.449 47.619 0.00 0.00 0.00 3.33
444 445 1.597663 GAGTTGGTTCTGACGTGTTGG 59.402 52.381 0.00 0.00 0.00 3.77
445 446 1.065709 AGTTGGTTCTGACGTGTTGGT 60.066 47.619 0.00 0.00 0.00 3.67
446 447 2.168936 AGTTGGTTCTGACGTGTTGGTA 59.831 45.455 0.00 0.00 0.00 3.25
447 448 2.519377 TGGTTCTGACGTGTTGGTAG 57.481 50.000 0.00 0.00 0.00 3.18
448 449 1.145803 GGTTCTGACGTGTTGGTAGC 58.854 55.000 0.00 0.00 0.00 3.58
449 450 1.539496 GGTTCTGACGTGTTGGTAGCA 60.539 52.381 0.00 0.00 0.00 3.49
450 451 2.206750 GTTCTGACGTGTTGGTAGCAA 58.793 47.619 2.54 2.54 0.00 3.91
451 452 1.860676 TCTGACGTGTTGGTAGCAAC 58.139 50.000 26.90 26.90 35.75 4.17
452 453 1.411246 TCTGACGTGTTGGTAGCAACT 59.589 47.619 31.38 16.61 36.15 3.16
453 454 2.159014 TCTGACGTGTTGGTAGCAACTT 60.159 45.455 31.38 19.14 36.15 2.66
454 455 3.068448 TCTGACGTGTTGGTAGCAACTTA 59.932 43.478 31.38 15.00 36.15 2.24
455 456 3.386486 TGACGTGTTGGTAGCAACTTAG 58.614 45.455 31.38 24.39 36.15 2.18
456 457 3.181473 TGACGTGTTGGTAGCAACTTAGT 60.181 43.478 31.38 26.70 36.15 2.24
457 458 3.800531 ACGTGTTGGTAGCAACTTAGTT 58.199 40.909 31.38 13.50 36.15 2.24
458 459 4.193865 ACGTGTTGGTAGCAACTTAGTTT 58.806 39.130 31.38 12.33 36.15 2.66
459 460 4.271776 ACGTGTTGGTAGCAACTTAGTTTC 59.728 41.667 31.38 15.23 36.15 2.78
460 461 4.510340 CGTGTTGGTAGCAACTTAGTTTCT 59.490 41.667 31.38 2.56 36.15 2.52
461 462 5.558273 CGTGTTGGTAGCAACTTAGTTTCTG 60.558 44.000 31.38 11.75 36.15 3.02
462 463 5.296035 GTGTTGGTAGCAACTTAGTTTCTGT 59.704 40.000 31.38 0.00 36.15 3.41
463 464 5.883673 TGTTGGTAGCAACTTAGTTTCTGTT 59.116 36.000 31.38 0.00 36.15 3.16
464 465 6.376018 TGTTGGTAGCAACTTAGTTTCTGTTT 59.624 34.615 31.38 0.00 36.15 2.83
465 466 7.094118 TGTTGGTAGCAACTTAGTTTCTGTTTT 60.094 33.333 31.38 0.00 36.15 2.43
466 467 8.400186 GTTGGTAGCAACTTAGTTTCTGTTTTA 58.600 33.333 26.48 0.00 32.67 1.52
467 468 8.508883 TGGTAGCAACTTAGTTTCTGTTTTAA 57.491 30.769 7.48 0.00 0.00 1.52
468 469 8.617809 TGGTAGCAACTTAGTTTCTGTTTTAAG 58.382 33.333 7.48 0.00 0.00 1.85
469 470 8.833493 GGTAGCAACTTAGTTTCTGTTTTAAGA 58.167 33.333 7.48 0.00 0.00 2.10
470 471 9.865484 GTAGCAACTTAGTTTCTGTTTTAAGAG 57.135 33.333 7.48 0.00 0.00 2.85
471 472 7.931275 AGCAACTTAGTTTCTGTTTTAAGAGG 58.069 34.615 0.00 0.00 0.00 3.69
472 473 7.556635 AGCAACTTAGTTTCTGTTTTAAGAGGT 59.443 33.333 0.00 0.00 0.00 3.85
473 474 7.856398 GCAACTTAGTTTCTGTTTTAAGAGGTC 59.144 37.037 0.00 0.00 0.00 3.85
474 475 9.110502 CAACTTAGTTTCTGTTTTAAGAGGTCT 57.889 33.333 0.00 0.00 0.00 3.85
475 476 8.890124 ACTTAGTTTCTGTTTTAAGAGGTCTC 57.110 34.615 0.00 0.00 0.00 3.36
476 477 8.706521 ACTTAGTTTCTGTTTTAAGAGGTCTCT 58.293 33.333 0.00 0.00 42.75 3.10
477 478 8.888579 TTAGTTTCTGTTTTAAGAGGTCTCTG 57.111 34.615 0.77 0.00 40.36 3.35
478 479 6.292150 AGTTTCTGTTTTAAGAGGTCTCTGG 58.708 40.000 0.77 0.00 40.36 3.86
479 480 5.888982 TTCTGTTTTAAGAGGTCTCTGGT 57.111 39.130 0.77 0.00 40.36 4.00
480 481 5.888982 TCTGTTTTAAGAGGTCTCTGGTT 57.111 39.130 0.77 0.00 40.36 3.67
481 482 5.855045 TCTGTTTTAAGAGGTCTCTGGTTC 58.145 41.667 0.77 0.00 40.36 3.62
482 483 4.628074 TGTTTTAAGAGGTCTCTGGTTCG 58.372 43.478 0.77 0.00 40.36 3.95
483 484 4.342951 TGTTTTAAGAGGTCTCTGGTTCGA 59.657 41.667 0.77 0.00 40.36 3.71
484 485 5.163385 TGTTTTAAGAGGTCTCTGGTTCGAA 60.163 40.000 0.77 0.00 40.36 3.71
485 486 5.740290 TTTAAGAGGTCTCTGGTTCGAAT 57.260 39.130 0.00 0.00 40.36 3.34
486 487 3.601443 AAGAGGTCTCTGGTTCGAATG 57.399 47.619 0.00 0.00 40.36 2.67
487 488 2.530701 AGAGGTCTCTGGTTCGAATGT 58.469 47.619 0.00 0.00 38.75 2.71
488 489 2.900546 AGAGGTCTCTGGTTCGAATGTT 59.099 45.455 0.00 0.00 38.75 2.71
489 490 3.056465 AGAGGTCTCTGGTTCGAATGTTC 60.056 47.826 0.00 0.00 38.75 3.18
490 491 6.399758 AGAGGTCTCTGGTTCGAATGTTCG 62.400 50.000 0.00 8.76 44.22 3.95
507 508 7.905604 AATGTTCGTTCATTCACTTATCTGA 57.094 32.000 2.99 0.00 33.43 3.27
508 509 7.905604 ATGTTCGTTCATTCACTTATCTGAA 57.094 32.000 0.00 0.00 34.65 3.02
509 510 7.905604 TGTTCGTTCATTCACTTATCTGAAT 57.094 32.000 0.00 0.00 40.81 2.57
510 511 8.996024 TGTTCGTTCATTCACTTATCTGAATA 57.004 30.769 0.00 0.00 38.57 1.75
511 512 9.599866 TGTTCGTTCATTCACTTATCTGAATAT 57.400 29.630 0.00 0.00 38.57 1.28
567 568 7.786178 TCTTGATATTTCTTCATAACCGTGG 57.214 36.000 0.00 0.00 0.00 4.94
568 569 7.335627 TCTTGATATTTCTTCATAACCGTGGT 58.664 34.615 0.00 0.00 0.00 4.16
569 570 8.479689 TCTTGATATTTCTTCATAACCGTGGTA 58.520 33.333 0.00 0.00 0.00 3.25
570 571 9.104965 CTTGATATTTCTTCATAACCGTGGTAA 57.895 33.333 0.00 0.00 0.00 2.85
571 572 8.428186 TGATATTTCTTCATAACCGTGGTAAC 57.572 34.615 0.00 0.00 0.00 2.50
572 573 7.496591 TGATATTTCTTCATAACCGTGGTAACC 59.503 37.037 0.00 0.00 0.00 2.85
573 574 4.620589 TTCTTCATAACCGTGGTAACCA 57.379 40.909 0.00 0.00 0.00 3.67
586 587 1.159285 GTAACCACGTTTACCAGCCC 58.841 55.000 0.00 0.00 0.00 5.19
587 588 0.036590 TAACCACGTTTACCAGCCCC 59.963 55.000 0.00 0.00 0.00 5.80
588 589 2.360726 CCACGTTTACCAGCCCCC 60.361 66.667 0.00 0.00 0.00 5.40
604 605 1.675552 CCCCCTCGATAAAATTGCGT 58.324 50.000 0.00 0.00 0.00 5.24
605 606 1.602377 CCCCCTCGATAAAATTGCGTC 59.398 52.381 0.00 0.00 0.00 5.19
606 607 2.285083 CCCCTCGATAAAATTGCGTCA 58.715 47.619 0.00 0.00 0.00 4.35
607 608 2.878406 CCCCTCGATAAAATTGCGTCAT 59.122 45.455 0.00 0.00 0.00 3.06
608 609 3.315191 CCCCTCGATAAAATTGCGTCATT 59.685 43.478 0.00 0.00 0.00 2.57
609 610 4.527564 CCCTCGATAAAATTGCGTCATTC 58.472 43.478 0.00 0.00 0.00 2.67
610 611 4.203828 CCTCGATAAAATTGCGTCATTCG 58.796 43.478 0.00 0.00 43.12 3.34
611 612 4.190304 TCGATAAAATTGCGTCATTCGG 57.810 40.909 0.00 0.00 40.26 4.30
612 613 3.619483 TCGATAAAATTGCGTCATTCGGT 59.381 39.130 0.00 0.00 40.26 4.69
613 614 4.093703 TCGATAAAATTGCGTCATTCGGTT 59.906 37.500 0.00 0.00 40.26 4.44
614 615 5.291371 TCGATAAAATTGCGTCATTCGGTTA 59.709 36.000 0.00 0.00 40.26 2.85
615 616 5.391433 CGATAAAATTGCGTCATTCGGTTAC 59.609 40.000 0.00 0.00 40.26 2.50
616 617 3.481112 AAATTGCGTCATTCGGTTACC 57.519 42.857 0.00 0.00 40.26 2.85
617 618 2.102070 ATTGCGTCATTCGGTTACCA 57.898 45.000 1.13 0.00 40.26 3.25
618 619 1.880271 TTGCGTCATTCGGTTACCAA 58.120 45.000 1.13 0.00 40.26 3.67
619 620 1.434555 TGCGTCATTCGGTTACCAAG 58.565 50.000 1.13 0.00 40.26 3.61
620 621 1.001068 TGCGTCATTCGGTTACCAAGA 59.999 47.619 1.13 0.00 40.26 3.02
621 622 1.392510 GCGTCATTCGGTTACCAAGAC 59.607 52.381 1.13 2.60 40.26 3.01
622 623 1.997606 CGTCATTCGGTTACCAAGACC 59.002 52.381 1.13 0.00 35.71 3.85
623 624 2.353406 CGTCATTCGGTTACCAAGACCT 60.353 50.000 1.13 0.00 34.95 3.85
624 625 3.671716 GTCATTCGGTTACCAAGACCTT 58.328 45.455 1.13 0.00 34.95 3.50
625 626 3.435671 GTCATTCGGTTACCAAGACCTTG 59.564 47.826 1.13 2.89 40.13 3.61
647 651 7.757173 CCTTGGTCTATATACATCAGATTCACG 59.243 40.741 0.00 0.00 0.00 4.35
759 764 3.634910 AGTTATCCTTTTGTTTGCGTGGT 59.365 39.130 0.00 0.00 0.00 4.16
760 765 4.822896 AGTTATCCTTTTGTTTGCGTGGTA 59.177 37.500 0.00 0.00 0.00 3.25
826 834 4.616143 GCTCAGCGAATACCGAATCAGATA 60.616 45.833 0.00 0.00 41.76 1.98
878 898 0.179127 CTCAGCTCCGCGATTCTTCA 60.179 55.000 8.23 0.00 0.00 3.02
881 901 2.174319 GCTCCGCGATTCTTCACCC 61.174 63.158 8.23 0.00 0.00 4.61
920 941 3.925090 CCCGACCCCGAGGCATAC 61.925 72.222 0.00 0.00 38.22 2.39
925 946 3.873812 CCCCGAGGCATACCCACC 61.874 72.222 0.00 0.00 36.11 4.61
927 948 4.235762 CCGAGGCATACCCACCCG 62.236 72.222 0.00 0.00 36.11 5.28
930 951 3.087906 AGGCATACCCACCCGACC 61.088 66.667 0.00 0.00 36.11 4.79
933 954 3.857038 CATACCCACCCGACCCCG 61.857 72.222 0.00 0.00 0.00 5.73
935 956 3.399911 ATACCCACCCGACCCCGAT 62.400 63.158 0.00 0.00 38.22 4.18
936 957 2.902069 ATACCCACCCGACCCCGATT 62.902 60.000 0.00 0.00 38.22 3.34
938 959 3.081409 CCACCCGACCCCGATTCT 61.081 66.667 0.00 0.00 38.22 2.40
939 960 2.666098 CCACCCGACCCCGATTCTT 61.666 63.158 0.00 0.00 38.22 2.52
940 961 1.153429 CACCCGACCCCGATTCTTC 60.153 63.158 0.00 0.00 38.22 2.87
941 962 1.611261 ACCCGACCCCGATTCTTCA 60.611 57.895 0.00 0.00 38.22 3.02
942 963 1.153429 CCCGACCCCGATTCTTCAC 60.153 63.158 0.00 0.00 38.22 3.18
1218 1244 2.361357 CACCCCTCCGTCGACTCT 60.361 66.667 14.70 0.00 0.00 3.24
1249 1275 4.995058 TCCTGGCGGGGGAAGGTT 62.995 66.667 13.58 0.00 35.33 3.50
1375 1404 2.203983 TGAAGAGGCTGGCCCAGA 60.204 61.111 16.85 0.00 36.58 3.86
1421 1450 1.000955 GACGGAGGTGAAGAAGCAGAA 59.999 52.381 0.00 0.00 0.00 3.02
1515 1550 4.221422 CGCGACATGGGGGACGAT 62.221 66.667 0.00 0.00 0.00 3.73
1524 1559 2.203209 GGGGACGATGACATGGCC 60.203 66.667 0.00 0.00 0.00 5.36
1542 1577 2.563427 GCCTTCTTTGCCACGCTC 59.437 61.111 0.00 0.00 0.00 5.03
1619 1669 0.109781 CGCAAGGTTGAAATCACCCG 60.110 55.000 0.00 0.00 33.18 5.28
1621 1674 1.616159 CAAGGTTGAAATCACCCGGT 58.384 50.000 0.00 0.00 33.18 5.28
1622 1675 1.960689 CAAGGTTGAAATCACCCGGTT 59.039 47.619 0.00 0.00 33.18 4.44
1660 1716 0.674581 CGGTGGCAGCATCTTTGAGA 60.675 55.000 17.80 0.00 0.00 3.27
1758 1814 1.675641 GGCCGGGATGGATATGCAC 60.676 63.158 2.18 0.00 42.00 4.57
1797 1913 3.787001 CCTCCGCCTCAGGGGTTC 61.787 72.222 7.07 0.00 46.19 3.62
1798 1914 3.787001 CTCCGCCTCAGGGGTTCC 61.787 72.222 7.07 0.00 46.19 3.62
1809 1925 2.841044 GGGTTCCCCTCCGCGATA 60.841 66.667 8.23 0.00 41.34 2.92
1810 1926 2.735237 GGTTCCCCTCCGCGATAG 59.265 66.667 8.23 4.27 0.00 2.08
1811 1927 1.831286 GGTTCCCCTCCGCGATAGA 60.831 63.158 8.23 0.00 39.76 1.98
1812 1928 1.186267 GGTTCCCCTCCGCGATAGAT 61.186 60.000 8.23 0.00 39.76 1.98
1813 1929 1.542492 GTTCCCCTCCGCGATAGATA 58.458 55.000 8.23 0.00 39.76 1.98
1814 1930 2.100989 GTTCCCCTCCGCGATAGATAT 58.899 52.381 8.23 0.00 39.76 1.63
1815 1931 1.763968 TCCCCTCCGCGATAGATATG 58.236 55.000 8.23 0.00 39.76 1.78
1816 1932 0.103208 CCCCTCCGCGATAGATATGC 59.897 60.000 8.23 0.00 39.76 3.14
1817 1933 0.817654 CCCTCCGCGATAGATATGCA 59.182 55.000 8.23 0.00 39.76 3.96
1818 1934 1.204704 CCCTCCGCGATAGATATGCAA 59.795 52.381 8.23 0.00 39.76 4.08
1819 1935 2.534298 CCTCCGCGATAGATATGCAAG 58.466 52.381 8.23 0.00 39.76 4.01
1820 1936 2.094494 CCTCCGCGATAGATATGCAAGT 60.094 50.000 8.23 0.00 39.76 3.16
1821 1937 2.919859 CTCCGCGATAGATATGCAAGTG 59.080 50.000 8.23 0.00 39.76 3.16
1822 1938 1.391485 CCGCGATAGATATGCAAGTGC 59.609 52.381 8.23 0.00 39.46 4.40
1833 1949 3.102515 GCAAGTGCAACAGCAGATG 57.897 52.632 0.00 0.00 41.43 2.90
1834 1950 0.388134 GCAAGTGCAACAGCAGATGG 60.388 55.000 0.00 0.00 41.43 3.51
1835 1951 0.956633 CAAGTGCAACAGCAGATGGT 59.043 50.000 0.00 0.00 41.43 3.55
1844 1960 2.932855 CAGCAGATGGTGATGGAGAT 57.067 50.000 6.15 0.00 45.66 2.75
1845 1961 2.495084 CAGCAGATGGTGATGGAGATG 58.505 52.381 6.15 0.00 45.66 2.90
1846 1962 1.202782 AGCAGATGGTGATGGAGATGC 60.203 52.381 0.00 0.00 0.00 3.91
1847 1963 1.893544 CAGATGGTGATGGAGATGCC 58.106 55.000 0.00 0.00 37.10 4.40
1848 1964 1.420514 CAGATGGTGATGGAGATGCCT 59.579 52.381 0.00 0.00 37.63 4.75
1849 1965 1.698532 AGATGGTGATGGAGATGCCTC 59.301 52.381 0.00 0.00 38.70 4.70
1863 1979 4.154347 CCTCCGGCTCAGGTGCTC 62.154 72.222 0.00 0.00 0.00 4.26
1864 1980 4.504916 CTCCGGCTCAGGTGCTCG 62.505 72.222 0.00 0.00 0.00 5.03
1882 1998 3.625897 CCGCCGGGAGCATGGATA 61.626 66.667 2.18 0.00 44.04 2.59
1883 1999 2.665000 CGCCGGGAGCATGGATAT 59.335 61.111 2.18 0.00 44.04 1.63
1884 2000 1.742880 CGCCGGGAGCATGGATATG 60.743 63.158 2.18 0.00 44.04 1.78
1897 2013 5.547181 CATGGATATGCAACAGCAGATAG 57.453 43.478 0.00 0.00 40.05 2.08
1898 2014 4.694760 TGGATATGCAACAGCAGATAGT 57.305 40.909 0.00 0.00 40.05 2.12
1899 2015 4.383173 TGGATATGCAACAGCAGATAGTG 58.617 43.478 0.00 0.00 40.05 2.74
1900 2016 4.101430 TGGATATGCAACAGCAGATAGTGA 59.899 41.667 0.00 0.00 40.05 3.41
1901 2017 5.221783 TGGATATGCAACAGCAGATAGTGAT 60.222 40.000 0.00 0.00 40.05 3.06
1909 2025 3.327626 CAGCAGATAGTGATGGAGATGC 58.672 50.000 0.00 0.00 39.03 3.91
1910 2026 2.302445 AGCAGATAGTGATGGAGATGCC 59.698 50.000 0.00 0.00 32.95 4.40
1911 2027 2.302445 GCAGATAGTGATGGAGATGCCT 59.698 50.000 0.00 0.00 37.63 4.75
1912 2028 3.617045 GCAGATAGTGATGGAGATGCCTC 60.617 52.174 0.00 0.00 38.70 4.70
1925 2041 3.474570 GCCTCCGGCTCAGGTGAT 61.475 66.667 9.30 0.00 46.69 3.06
1926 2042 2.818132 CCTCCGGCTCAGGTGATC 59.182 66.667 0.00 0.00 0.00 2.92
1927 2043 2.415010 CTCCGGCTCAGGTGATCG 59.585 66.667 0.00 0.00 0.00 3.69
1928 2044 3.781770 CTCCGGCTCAGGTGATCGC 62.782 68.421 0.00 0.00 0.00 4.58
1929 2045 4.899239 CCGGCTCAGGTGATCGCC 62.899 72.222 18.01 18.01 39.14 5.54
1932 2048 4.521062 GCTCAGGTGATCGCCGCT 62.521 66.667 19.45 0.00 0.00 5.52
1933 2049 2.584418 CTCAGGTGATCGCCGCTG 60.584 66.667 19.45 13.34 0.00 5.18
1934 2050 4.147449 TCAGGTGATCGCCGCTGG 62.147 66.667 19.45 10.70 0.00 4.85
1943 2059 3.941188 CGCCGCTGGGGTGGATAT 61.941 66.667 15.85 0.00 45.39 1.63
1944 2060 2.281761 GCCGCTGGGGTGGATATG 60.282 66.667 12.70 0.00 45.39 1.78
1945 2061 2.281761 CCGCTGGGGTGGATATGC 60.282 66.667 1.98 0.00 45.39 3.14
1946 2062 2.510411 CGCTGGGGTGGATATGCA 59.490 61.111 0.00 0.00 0.00 3.96
1947 2063 1.598962 CGCTGGGGTGGATATGCAG 60.599 63.158 0.00 0.00 0.00 4.41
1948 2064 1.228367 GCTGGGGTGGATATGCAGG 60.228 63.158 0.00 0.00 0.00 4.85
1949 2065 1.708993 GCTGGGGTGGATATGCAGGA 61.709 60.000 0.00 0.00 0.00 3.86
1950 2066 0.399454 CTGGGGTGGATATGCAGGAG 59.601 60.000 0.00 0.00 0.00 3.69
1951 2067 0.030195 TGGGGTGGATATGCAGGAGA 60.030 55.000 0.00 0.00 0.00 3.71
1952 2068 1.366319 GGGGTGGATATGCAGGAGAT 58.634 55.000 0.00 0.00 0.00 2.75
1953 2069 1.004044 GGGGTGGATATGCAGGAGATG 59.996 57.143 0.00 0.00 0.00 2.90
2028 2249 4.796495 GGGTTCGCTGCCGGGATT 62.796 66.667 2.18 0.00 34.56 3.01
2058 2282 3.958147 TGGAGCAGATGCAAATGATGATT 59.042 39.130 7.68 0.00 45.16 2.57
2109 2333 3.181451 TGGAGACAGAGTTTCAGCAATGT 60.181 43.478 0.00 0.00 35.01 2.71
2118 2342 4.081406 AGTTTCAGCAATGTCTTATGGCA 58.919 39.130 0.00 0.00 0.00 4.92
2231 2461 5.356751 TCCATCGGTTCCAGTAAAATCATTG 59.643 40.000 0.00 0.00 0.00 2.82
2265 2501 8.110860 ACGATAATTCCTCAATTTGTTTGTCT 57.889 30.769 0.00 0.00 36.65 3.41
2329 2620 8.051901 TCTTCGTCTAGTTTCATCTTATGTCA 57.948 34.615 0.00 0.00 0.00 3.58
2400 2693 2.048222 GTACTGTCGCTGGCTGCA 60.048 61.111 16.76 1.04 43.06 4.41
2546 2844 5.655090 TCTTATTCACAGACAATCGTCCCTA 59.345 40.000 0.00 0.00 43.73 3.53
2549 2849 2.894765 TCACAGACAATCGTCCCTAACA 59.105 45.455 0.00 0.00 43.73 2.41
2651 2969 8.507249 AGCACAATACAAGATAACAAGAGAAAC 58.493 33.333 0.00 0.00 0.00 2.78
2946 3364 0.834612 CCCCGCAGACAAAGGGTATA 59.165 55.000 0.00 0.00 43.58 1.47
2964 3382 8.167605 AGGGTATATATAGAAATCATCGGACG 57.832 38.462 0.00 0.00 0.00 4.79
2980 3398 4.864334 CGCTGCCCCTTGCCCTAG 62.864 72.222 0.00 0.00 40.16 3.02
2981 3399 4.512914 GCTGCCCCTTGCCCTAGG 62.513 72.222 0.06 0.06 40.16 3.02
2982 3400 2.692368 CTGCCCCTTGCCCTAGGA 60.692 66.667 11.48 0.00 40.16 2.94
2983 3401 3.015145 TGCCCCTTGCCCTAGGAC 61.015 66.667 11.48 0.00 40.16 3.85
2984 3402 4.176752 GCCCCTTGCCCTAGGACG 62.177 72.222 11.48 0.00 37.50 4.79
2985 3403 2.365105 CCCCTTGCCCTAGGACGA 60.365 66.667 11.48 0.00 37.50 4.20
2986 3404 2.435693 CCCCTTGCCCTAGGACGAG 61.436 68.421 11.48 8.03 37.50 4.18
2987 3405 1.381327 CCCTTGCCCTAGGACGAGA 60.381 63.158 13.77 0.00 37.50 4.04
2989 3407 0.684805 CCTTGCCCTAGGACGAGACT 60.685 60.000 13.77 0.00 37.50 3.24
2990 3408 1.187087 CTTGCCCTAGGACGAGACTT 58.813 55.000 11.48 0.00 0.00 3.01
2991 3409 0.895530 TTGCCCTAGGACGAGACTTG 59.104 55.000 11.48 0.00 0.00 3.16
2992 3410 1.142097 GCCCTAGGACGAGACTTGC 59.858 63.158 11.48 0.00 0.00 4.01
2993 3411 1.817209 CCCTAGGACGAGACTTGCC 59.183 63.158 11.48 0.00 0.00 4.52
2994 3412 0.684805 CCCTAGGACGAGACTTGCCT 60.685 60.000 11.48 9.72 34.56 4.75
2995 3413 0.457851 CCTAGGACGAGACTTGCCTG 59.542 60.000 1.05 6.08 32.04 4.85
2996 3414 0.179124 CTAGGACGAGACTTGCCTGC 60.179 60.000 13.19 0.00 32.04 4.85
2997 3415 0.612174 TAGGACGAGACTTGCCTGCT 60.612 55.000 13.19 0.00 32.04 4.24
2998 3416 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
2999 3417 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
3001 3419 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
3002 3420 3.672295 GAGACTTGCCTGCTCCCCG 62.672 68.421 0.00 0.00 0.00 5.73
3020 3438 3.422303 CGTGTGTGCCCATCCGTG 61.422 66.667 0.00 0.00 0.00 4.94
3021 3439 3.737172 GTGTGTGCCCATCCGTGC 61.737 66.667 0.00 0.00 0.00 5.34
3022 3440 3.952508 TGTGTGCCCATCCGTGCT 61.953 61.111 0.00 0.00 0.00 4.40
3023 3441 3.127533 GTGTGCCCATCCGTGCTC 61.128 66.667 0.00 0.00 0.00 4.26
3036 3454 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
3040 3458 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
3042 3460 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
3043 3461 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
3044 3462 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
3045 3463 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
3046 3464 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
3047 3465 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
3050 3468 6.033341 GCATACGTGGCTTGATTTGATTAAA 58.967 36.000 0.00 0.00 0.00 1.52
3051 3469 6.529829 GCATACGTGGCTTGATTTGATTAAAA 59.470 34.615 0.00 0.00 0.00 1.52
3052 3470 7.462724 GCATACGTGGCTTGATTTGATTAAAAC 60.463 37.037 0.00 0.00 0.00 2.43
3053 3471 5.837437 ACGTGGCTTGATTTGATTAAAACA 58.163 33.333 0.00 0.00 0.00 2.83
3054 3472 6.276847 ACGTGGCTTGATTTGATTAAAACAA 58.723 32.000 5.70 5.70 36.57 2.83
3055 3473 6.758886 ACGTGGCTTGATTTGATTAAAACAAA 59.241 30.769 7.01 11.59 37.87 2.83
3056 3474 7.278868 ACGTGGCTTGATTTGATTAAAACAAAA 59.721 29.630 12.70 0.00 37.87 2.44
3057 3475 8.281893 CGTGGCTTGATTTGATTAAAACAAAAT 58.718 29.630 12.70 2.78 37.87 1.82
3066 3484 8.819643 TTTGATTAAAACAAAATAAGTCCCGG 57.180 30.769 0.00 0.00 34.89 5.73
3068 3486 3.671008 AAAACAAAATAAGTCCCGGCC 57.329 42.857 0.00 0.00 0.00 6.13
3071 3489 0.323908 CAAAATAAGTCCCGGCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
3072 3490 0.323999 AAAATAAGTCCCGGCCCCAC 60.324 55.000 0.00 0.00 0.00 4.61
3073 3491 2.219449 AAATAAGTCCCGGCCCCACC 62.219 60.000 0.00 0.00 0.00 4.61
3081 3499 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
3082 3500 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
3083 3501 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
3084 3502 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
3085 3503 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
3086 3504 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
3087 3505 1.342975 CCCCACCCCCTTAAAATCAGG 60.343 57.143 0.00 0.00 0.00 3.86
3111 3529 6.176896 GGGGGAGATGATTAGATTAGAAAGC 58.823 44.000 0.00 0.00 0.00 3.51
3112 3530 6.240002 GGGGGAGATGATTAGATTAGAAAGCA 60.240 42.308 0.00 0.00 0.00 3.91
3113 3531 7.227156 GGGGAGATGATTAGATTAGAAAGCAA 58.773 38.462 0.00 0.00 0.00 3.91
3154 4315 0.401105 AGGATGAGGTGGGAGGATGG 60.401 60.000 0.00 0.00 0.00 3.51
3155 4316 0.400525 GGATGAGGTGGGAGGATGGA 60.401 60.000 0.00 0.00 0.00 3.41
3156 4317 1.739750 GATGAGGTGGGAGGATGGAT 58.260 55.000 0.00 0.00 0.00 3.41
3159 4320 1.386485 AGGTGGGAGGATGGATGGG 60.386 63.158 0.00 0.00 0.00 4.00
3160 4321 1.385915 GGTGGGAGGATGGATGGGA 60.386 63.158 0.00 0.00 0.00 4.37
3161 4322 1.422161 GGTGGGAGGATGGATGGGAG 61.422 65.000 0.00 0.00 0.00 4.30
3162 4323 1.771746 TGGGAGGATGGATGGGAGC 60.772 63.158 0.00 0.00 0.00 4.70
3163 4324 1.771746 GGGAGGATGGATGGGAGCA 60.772 63.158 0.00 0.00 0.00 4.26
3164 4325 1.138863 GGGAGGATGGATGGGAGCAT 61.139 60.000 0.00 0.00 0.00 3.79
3165 4326 0.037877 GGAGGATGGATGGGAGCATG 59.962 60.000 0.00 0.00 0.00 4.06
3167 4328 1.076192 GGATGGATGGGAGCATGGG 59.924 63.158 0.00 0.00 0.00 4.00
3168 4329 1.076192 GATGGATGGGAGCATGGGG 59.924 63.158 0.00 0.00 0.00 4.96
3170 4331 1.432852 ATGGATGGGAGCATGGGGAG 61.433 60.000 0.00 0.00 0.00 4.30
3171 4332 2.838467 GGATGGGAGCATGGGGAGG 61.838 68.421 0.00 0.00 0.00 4.30
3172 4333 2.780040 ATGGGAGCATGGGGAGGG 60.780 66.667 0.00 0.00 0.00 4.30
3173 4334 3.367604 ATGGGAGCATGGGGAGGGA 62.368 63.158 0.00 0.00 0.00 4.20
3174 4335 3.174265 GGGAGCATGGGGAGGGAG 61.174 72.222 0.00 0.00 0.00 4.30
3175 4336 2.367512 GGAGCATGGGGAGGGAGT 60.368 66.667 0.00 0.00 0.00 3.85
3176 4337 1.074471 GGAGCATGGGGAGGGAGTA 60.074 63.158 0.00 0.00 0.00 2.59
3177 4338 1.124477 GGAGCATGGGGAGGGAGTAG 61.124 65.000 0.00 0.00 0.00 2.57
3180 4341 1.384502 CATGGGGAGGGAGTAGGCA 60.385 63.158 0.00 0.00 0.00 4.75
3181 4342 0.988145 CATGGGGAGGGAGTAGGCAA 60.988 60.000 0.00 0.00 0.00 4.52
3182 4343 0.695803 ATGGGGAGGGAGTAGGCAAG 60.696 60.000 0.00 0.00 0.00 4.01
3184 4345 2.747443 GGGAGGGAGTAGGCAAGCC 61.747 68.421 2.02 2.02 0.00 4.35
3185 4346 1.995626 GGAGGGAGTAGGCAAGCCA 60.996 63.158 14.40 0.00 38.92 4.75
3187 4348 0.978146 GAGGGAGTAGGCAAGCCAGA 60.978 60.000 14.40 0.00 38.92 3.86
3188 4349 0.327000 AGGGAGTAGGCAAGCCAGAT 60.327 55.000 14.40 0.00 38.92 2.90
3189 4350 0.107643 GGGAGTAGGCAAGCCAGATC 59.892 60.000 14.40 7.31 38.92 2.75
3190 4351 0.107643 GGAGTAGGCAAGCCAGATCC 59.892 60.000 14.40 12.49 38.92 3.36
3194 4355 0.548031 TAGGCAAGCCAGATCCCTTG 59.452 55.000 14.40 11.83 40.97 3.61
3196 4357 3.930504 CAAGCCAGATCCCTTGCC 58.069 61.111 5.70 0.00 32.94 4.52
3198 4359 3.001358 AAGCCAGATCCCTTGCCCC 62.001 63.158 0.00 0.00 31.92 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.904900 GTAGCCCTAACCCGCCGC 62.905 72.222 0.00 0.00 0.00 6.53
12 13 4.580551 CGTAGCCCTAACCCGCCG 62.581 72.222 0.00 0.00 0.00 6.46
38 39 1.151777 AAAGCACATATCCGTCGCCG 61.152 55.000 0.00 0.00 0.00 6.46
39 40 0.304705 CAAAGCACATATCCGTCGCC 59.695 55.000 0.00 0.00 0.00 5.54
40 41 1.006832 ACAAAGCACATATCCGTCGC 58.993 50.000 0.00 0.00 0.00 5.19
41 42 3.863424 ACTAACAAAGCACATATCCGTCG 59.137 43.478 0.00 0.00 0.00 5.12
42 43 4.868171 TGACTAACAAAGCACATATCCGTC 59.132 41.667 0.00 0.00 0.00 4.79
43 44 4.827692 TGACTAACAAAGCACATATCCGT 58.172 39.130 0.00 0.00 0.00 4.69
44 45 5.741425 CATGACTAACAAAGCACATATCCG 58.259 41.667 0.00 0.00 0.00 4.18
45 46 5.297776 AGCATGACTAACAAAGCACATATCC 59.702 40.000 0.00 0.00 36.51 2.59
46 47 6.183360 ACAGCATGACTAACAAAGCACATATC 60.183 38.462 0.00 0.00 39.69 1.63
47 48 5.649395 ACAGCATGACTAACAAAGCACATAT 59.351 36.000 0.00 0.00 39.69 1.78
48 49 5.003160 ACAGCATGACTAACAAAGCACATA 58.997 37.500 0.00 0.00 39.69 2.29
49 50 3.822735 ACAGCATGACTAACAAAGCACAT 59.177 39.130 0.00 0.00 39.69 3.21
50 51 3.213506 ACAGCATGACTAACAAAGCACA 58.786 40.909 0.00 0.00 39.69 4.57
51 52 3.904136 ACAGCATGACTAACAAAGCAC 57.096 42.857 0.00 0.00 39.69 4.40
52 53 6.384258 TTTTACAGCATGACTAACAAAGCA 57.616 33.333 0.00 0.00 39.69 3.91
53 54 7.594758 TCATTTTTACAGCATGACTAACAAAGC 59.405 33.333 0.00 0.00 39.69 3.51
54 55 9.462174 TTCATTTTTACAGCATGACTAACAAAG 57.538 29.630 0.00 0.00 39.69 2.77
55 56 9.243637 GTTCATTTTTACAGCATGACTAACAAA 57.756 29.630 0.00 0.00 39.69 2.83
56 57 8.409371 TGTTCATTTTTACAGCATGACTAACAA 58.591 29.630 0.00 0.00 39.69 2.83
57 58 7.935520 TGTTCATTTTTACAGCATGACTAACA 58.064 30.769 0.00 0.00 39.69 2.41
58 59 8.690840 GTTGTTCATTTTTACAGCATGACTAAC 58.309 33.333 0.00 0.00 39.69 2.34
65 66 5.863397 CCATCGTTGTTCATTTTTACAGCAT 59.137 36.000 0.00 0.00 0.00 3.79
71 72 5.240623 ACAGCTCCATCGTTGTTCATTTTTA 59.759 36.000 0.00 0.00 0.00 1.52
82 83 1.079127 CCCGAACAGCTCCATCGTT 60.079 57.895 10.38 0.00 34.90 3.85
125 126 2.580322 TCTTCCCAAATGATAGCCACCA 59.420 45.455 0.00 0.00 0.00 4.17
126 127 3.297134 TCTTCCCAAATGATAGCCACC 57.703 47.619 0.00 0.00 0.00 4.61
219 220 4.040339 TGCTTACTCACTCATTTCAGTCCA 59.960 41.667 0.00 0.00 0.00 4.02
248 249 7.691213 TGGTAACCAAAACCTTGATATAGACA 58.309 34.615 0.00 0.00 37.91 3.41
249 250 7.827729 ACTGGTAACCAAAACCTTGATATAGAC 59.172 37.037 0.00 0.00 37.91 2.59
250 251 7.924541 ACTGGTAACCAAAACCTTGATATAGA 58.075 34.615 0.00 0.00 37.91 1.98
251 252 7.827236 TGACTGGTAACCAAAACCTTGATATAG 59.173 37.037 0.00 0.00 37.91 1.31
252 253 7.691213 TGACTGGTAACCAAAACCTTGATATA 58.309 34.615 0.00 0.00 37.91 0.86
253 254 6.548321 TGACTGGTAACCAAAACCTTGATAT 58.452 36.000 0.00 0.00 37.91 1.63
254 255 5.942961 TGACTGGTAACCAAAACCTTGATA 58.057 37.500 0.00 0.00 37.91 2.15
255 256 4.798882 TGACTGGTAACCAAAACCTTGAT 58.201 39.130 0.00 0.00 37.91 2.57
256 257 4.237976 TGACTGGTAACCAAAACCTTGA 57.762 40.909 0.00 0.00 37.91 3.02
257 258 4.993029 TTGACTGGTAACCAAAACCTTG 57.007 40.909 0.00 0.00 37.91 3.61
258 259 6.553953 ATTTTGACTGGTAACCAAAACCTT 57.446 33.333 0.00 0.00 40.94 3.50
259 260 6.553953 AATTTTGACTGGTAACCAAAACCT 57.446 33.333 0.00 0.00 40.94 3.50
260 261 6.819146 TGAAATTTTGACTGGTAACCAAAACC 59.181 34.615 0.00 0.00 40.94 3.27
261 262 7.835634 TGAAATTTTGACTGGTAACCAAAAC 57.164 32.000 0.00 0.00 40.94 2.43
262 263 8.314751 TCTTGAAATTTTGACTGGTAACCAAAA 58.685 29.630 0.00 0.00 41.90 2.44
263 264 7.841956 TCTTGAAATTTTGACTGGTAACCAAA 58.158 30.769 0.00 0.00 30.80 3.28
264 265 7.411486 TCTTGAAATTTTGACTGGTAACCAA 57.589 32.000 0.00 0.00 30.80 3.67
265 266 7.595819 ATCTTGAAATTTTGACTGGTAACCA 57.404 32.000 0.00 0.00 0.00 3.67
266 267 8.887036 AAATCTTGAAATTTTGACTGGTAACC 57.113 30.769 0.00 0.00 0.00 2.85
268 269 9.541143 GGAAAATCTTGAAATTTTGACTGGTAA 57.459 29.630 0.00 0.00 38.59 2.85
269 270 8.700051 TGGAAAATCTTGAAATTTTGACTGGTA 58.300 29.630 0.00 0.00 38.59 3.25
270 271 7.563906 TGGAAAATCTTGAAATTTTGACTGGT 58.436 30.769 0.00 0.00 38.59 4.00
271 272 8.500773 CATGGAAAATCTTGAAATTTTGACTGG 58.499 33.333 0.00 0.00 38.59 4.00
272 273 8.500773 CCATGGAAAATCTTGAAATTTTGACTG 58.499 33.333 5.56 0.00 38.59 3.51
273 274 8.212995 ACCATGGAAAATCTTGAAATTTTGACT 58.787 29.630 21.47 0.00 38.59 3.41
274 275 8.382030 ACCATGGAAAATCTTGAAATTTTGAC 57.618 30.769 21.47 0.00 38.59 3.18
275 276 8.977267 AACCATGGAAAATCTTGAAATTTTGA 57.023 26.923 21.47 0.00 38.59 2.69
277 278 9.283768 GGTAACCATGGAAAATCTTGAAATTTT 57.716 29.630 21.47 0.00 40.60 1.82
278 279 8.435982 TGGTAACCATGGAAAATCTTGAAATTT 58.564 29.630 21.47 0.00 0.00 1.82
279 280 7.877612 GTGGTAACCATGGAAAATCTTGAAATT 59.122 33.333 21.47 0.00 35.28 1.82
280 281 7.386059 GTGGTAACCATGGAAAATCTTGAAAT 58.614 34.615 21.47 0.00 35.28 2.17
281 282 6.515862 CGTGGTAACCATGGAAAATCTTGAAA 60.516 38.462 21.47 0.00 36.92 2.69
282 283 5.048364 CGTGGTAACCATGGAAAATCTTGAA 60.048 40.000 21.47 0.00 36.92 2.69
283 284 4.457603 CGTGGTAACCATGGAAAATCTTGA 59.542 41.667 21.47 0.00 36.92 3.02
284 285 4.217550 ACGTGGTAACCATGGAAAATCTTG 59.782 41.667 21.47 4.21 44.23 3.02
285 286 4.403734 ACGTGGTAACCATGGAAAATCTT 58.596 39.130 21.47 3.16 44.23 2.40
286 287 4.028993 ACGTGGTAACCATGGAAAATCT 57.971 40.909 21.47 0.00 44.23 2.40
287 288 6.445357 AATACGTGGTAACCATGGAAAATC 57.555 37.500 21.47 3.80 44.23 2.17
288 289 6.127563 GGAAATACGTGGTAACCATGGAAAAT 60.128 38.462 21.47 3.99 44.23 1.82
289 290 5.183522 GGAAATACGTGGTAACCATGGAAAA 59.816 40.000 21.47 0.00 44.23 2.29
290 291 4.701171 GGAAATACGTGGTAACCATGGAAA 59.299 41.667 21.47 2.15 44.23 3.13
291 292 4.263435 GGAAATACGTGGTAACCATGGAA 58.737 43.478 21.47 2.58 44.23 3.53
292 293 3.679361 CGGAAATACGTGGTAACCATGGA 60.679 47.826 21.47 0.00 44.23 3.41
293 294 2.610374 CGGAAATACGTGGTAACCATGG 59.390 50.000 11.19 11.19 44.23 3.66
294 295 3.264104 ACGGAAATACGTGGTAACCATG 58.736 45.455 0.00 0.00 46.64 3.66
295 296 3.615224 ACGGAAATACGTGGTAACCAT 57.385 42.857 0.00 0.00 46.64 3.55
305 306 1.881252 CGAGGGGCACGGAAATACG 60.881 63.158 0.00 0.00 40.31 3.06
306 307 0.106149 ATCGAGGGGCACGGAAATAC 59.894 55.000 0.00 0.00 0.00 1.89
307 308 1.707106 TATCGAGGGGCACGGAAATA 58.293 50.000 0.00 0.00 0.00 1.40
308 309 0.834612 TTATCGAGGGGCACGGAAAT 59.165 50.000 0.00 0.00 0.00 2.17
309 310 0.614294 TTTATCGAGGGGCACGGAAA 59.386 50.000 0.00 0.00 0.00 3.13
310 311 0.834612 ATTTATCGAGGGGCACGGAA 59.165 50.000 0.00 0.00 0.00 4.30
311 312 0.834612 AATTTATCGAGGGGCACGGA 59.165 50.000 0.00 0.00 0.00 4.69
312 313 1.226746 GAATTTATCGAGGGGCACGG 58.773 55.000 0.00 0.00 0.00 4.94
313 314 1.226746 GGAATTTATCGAGGGGCACG 58.773 55.000 0.00 0.00 0.00 5.34
314 315 1.133915 TGGGAATTTATCGAGGGGCAC 60.134 52.381 0.00 0.00 0.00 5.01
315 316 1.217916 TGGGAATTTATCGAGGGGCA 58.782 50.000 0.00 0.00 0.00 5.36
316 317 2.586648 ATGGGAATTTATCGAGGGGC 57.413 50.000 0.00 0.00 0.00 5.80
317 318 3.618997 CGGTATGGGAATTTATCGAGGGG 60.619 52.174 0.00 0.00 0.00 4.79
318 319 3.259876 TCGGTATGGGAATTTATCGAGGG 59.740 47.826 0.00 0.00 0.00 4.30
319 320 4.495422 CTCGGTATGGGAATTTATCGAGG 58.505 47.826 8.92 0.00 39.09 4.63
320 321 3.927142 GCTCGGTATGGGAATTTATCGAG 59.073 47.826 11.51 11.51 43.61 4.04
321 322 3.322541 TGCTCGGTATGGGAATTTATCGA 59.677 43.478 0.00 0.00 0.00 3.59
322 323 3.659786 TGCTCGGTATGGGAATTTATCG 58.340 45.455 0.00 0.00 0.00 2.92
323 324 6.385649 TTTTGCTCGGTATGGGAATTTATC 57.614 37.500 0.00 0.00 0.00 1.75
324 325 6.783708 TTTTTGCTCGGTATGGGAATTTAT 57.216 33.333 0.00 0.00 0.00 1.40
371 372 9.839589 CGTTACTATAAATCGAGCGTTTAAATT 57.160 29.630 0.00 0.00 0.00 1.82
372 373 9.023967 ACGTTACTATAAATCGAGCGTTTAAAT 57.976 29.630 0.00 0.00 0.00 1.40
373 374 8.393395 ACGTTACTATAAATCGAGCGTTTAAA 57.607 30.769 0.00 0.00 0.00 1.52
374 375 7.969387 ACGTTACTATAAATCGAGCGTTTAA 57.031 32.000 0.00 0.00 0.00 1.52
375 376 9.106286 CATACGTTACTATAAATCGAGCGTTTA 57.894 33.333 0.00 0.00 0.00 2.01
376 377 7.645340 ACATACGTTACTATAAATCGAGCGTTT 59.355 33.333 0.00 0.00 0.00 3.60
377 378 7.134815 ACATACGTTACTATAAATCGAGCGTT 58.865 34.615 0.00 0.00 0.00 4.84
378 379 6.662616 ACATACGTTACTATAAATCGAGCGT 58.337 36.000 0.00 0.00 0.00 5.07
379 380 7.424738 CCTACATACGTTACTATAAATCGAGCG 59.575 40.741 0.00 0.00 0.00 5.03
380 381 8.446273 TCCTACATACGTTACTATAAATCGAGC 58.554 37.037 0.00 0.00 0.00 5.03
392 393 9.339492 GCACTAATTAGATCCTACATACGTTAC 57.661 37.037 19.38 0.00 0.00 2.50
393 394 8.517878 GGCACTAATTAGATCCTACATACGTTA 58.482 37.037 19.38 0.00 0.00 3.18
394 395 7.014905 TGGCACTAATTAGATCCTACATACGTT 59.985 37.037 19.38 0.00 0.00 3.99
395 396 6.492429 TGGCACTAATTAGATCCTACATACGT 59.508 38.462 19.38 0.00 0.00 3.57
396 397 6.920817 TGGCACTAATTAGATCCTACATACG 58.079 40.000 19.38 0.00 0.00 3.06
399 400 9.326489 TCTTATGGCACTAATTAGATCCTACAT 57.674 33.333 19.38 14.30 0.00 2.29
400 401 8.721133 TCTTATGGCACTAATTAGATCCTACA 57.279 34.615 19.38 8.93 0.00 2.74
401 402 8.808092 ACTCTTATGGCACTAATTAGATCCTAC 58.192 37.037 19.38 3.98 0.00 3.18
402 403 8.958060 ACTCTTATGGCACTAATTAGATCCTA 57.042 34.615 19.38 9.77 0.00 2.94
403 404 7.863901 ACTCTTATGGCACTAATTAGATCCT 57.136 36.000 19.38 10.59 0.00 3.24
404 405 7.389053 CCAACTCTTATGGCACTAATTAGATCC 59.611 40.741 19.38 17.28 0.00 3.36
405 406 7.934120 ACCAACTCTTATGGCACTAATTAGATC 59.066 37.037 19.38 9.37 41.89 2.75
406 407 7.806180 ACCAACTCTTATGGCACTAATTAGAT 58.194 34.615 19.38 4.71 41.89 1.98
407 408 7.195374 ACCAACTCTTATGGCACTAATTAGA 57.805 36.000 19.38 0.00 41.89 2.10
408 409 7.770897 AGAACCAACTCTTATGGCACTAATTAG 59.229 37.037 11.05 11.05 41.89 1.73
409 410 7.552687 CAGAACCAACTCTTATGGCACTAATTA 59.447 37.037 0.00 0.00 41.89 1.40
410 411 6.375455 CAGAACCAACTCTTATGGCACTAATT 59.625 38.462 0.00 0.00 41.89 1.40
411 412 5.882557 CAGAACCAACTCTTATGGCACTAAT 59.117 40.000 0.00 0.00 41.89 1.73
412 413 5.012664 TCAGAACCAACTCTTATGGCACTAA 59.987 40.000 0.00 0.00 41.89 2.24
413 414 4.530553 TCAGAACCAACTCTTATGGCACTA 59.469 41.667 0.00 0.00 41.89 2.74
414 415 3.327757 TCAGAACCAACTCTTATGGCACT 59.672 43.478 0.00 0.00 41.89 4.40
415 416 3.437049 GTCAGAACCAACTCTTATGGCAC 59.563 47.826 0.00 0.00 41.89 5.01
416 417 3.674997 GTCAGAACCAACTCTTATGGCA 58.325 45.455 0.00 0.00 41.89 4.92
417 418 2.673368 CGTCAGAACCAACTCTTATGGC 59.327 50.000 0.00 0.00 41.89 4.40
418 419 3.679980 CACGTCAGAACCAACTCTTATGG 59.320 47.826 0.00 0.00 43.84 2.74
419 420 4.307432 ACACGTCAGAACCAACTCTTATG 58.693 43.478 0.00 0.00 0.00 1.90
420 421 4.602340 ACACGTCAGAACCAACTCTTAT 57.398 40.909 0.00 0.00 0.00 1.73
421 422 4.116961 CAACACGTCAGAACCAACTCTTA 58.883 43.478 0.00 0.00 0.00 2.10
422 423 2.936498 CAACACGTCAGAACCAACTCTT 59.064 45.455 0.00 0.00 0.00 2.85
423 424 2.550978 CAACACGTCAGAACCAACTCT 58.449 47.619 0.00 0.00 0.00 3.24
424 425 1.597663 CCAACACGTCAGAACCAACTC 59.402 52.381 0.00 0.00 0.00 3.01
425 426 1.065709 ACCAACACGTCAGAACCAACT 60.066 47.619 0.00 0.00 0.00 3.16
426 427 1.375551 ACCAACACGTCAGAACCAAC 58.624 50.000 0.00 0.00 0.00 3.77
427 428 2.828877 CTACCAACACGTCAGAACCAA 58.171 47.619 0.00 0.00 0.00 3.67
428 429 1.539496 GCTACCAACACGTCAGAACCA 60.539 52.381 0.00 0.00 0.00 3.67
429 430 1.145803 GCTACCAACACGTCAGAACC 58.854 55.000 0.00 0.00 0.00 3.62
430 431 1.860676 TGCTACCAACACGTCAGAAC 58.139 50.000 0.00 0.00 0.00 3.01
431 432 2.605837 TTGCTACCAACACGTCAGAA 57.394 45.000 0.00 0.00 0.00 3.02
441 442 7.399245 AAAACAGAAACTAAGTTGCTACCAA 57.601 32.000 0.00 0.00 28.15 3.67
442 443 8.508883 TTAAAACAGAAACTAAGTTGCTACCA 57.491 30.769 0.00 0.00 28.15 3.25
443 444 8.833493 TCTTAAAACAGAAACTAAGTTGCTACC 58.167 33.333 0.00 0.00 28.15 3.18
444 445 9.865484 CTCTTAAAACAGAAACTAAGTTGCTAC 57.135 33.333 0.00 0.00 28.15 3.58
445 446 9.052759 CCTCTTAAAACAGAAACTAAGTTGCTA 57.947 33.333 0.00 0.00 28.15 3.49
446 447 7.556635 ACCTCTTAAAACAGAAACTAAGTTGCT 59.443 33.333 0.00 0.00 30.33 3.91
447 448 7.704271 ACCTCTTAAAACAGAAACTAAGTTGC 58.296 34.615 0.00 0.00 0.00 4.17
448 449 9.110502 AGACCTCTTAAAACAGAAACTAAGTTG 57.889 33.333 0.00 0.00 0.00 3.16
449 450 9.327628 GAGACCTCTTAAAACAGAAACTAAGTT 57.672 33.333 0.00 0.00 0.00 2.66
450 451 8.706521 AGAGACCTCTTAAAACAGAAACTAAGT 58.293 33.333 0.00 0.00 36.31 2.24
451 452 8.983724 CAGAGACCTCTTAAAACAGAAACTAAG 58.016 37.037 0.00 0.00 37.98 2.18
452 453 7.931948 CCAGAGACCTCTTAAAACAGAAACTAA 59.068 37.037 0.00 0.00 37.98 2.24
453 454 7.070821 ACCAGAGACCTCTTAAAACAGAAACTA 59.929 37.037 0.00 0.00 37.98 2.24
454 455 6.126739 ACCAGAGACCTCTTAAAACAGAAACT 60.127 38.462 0.00 0.00 37.98 2.66
455 456 6.056236 ACCAGAGACCTCTTAAAACAGAAAC 58.944 40.000 0.00 0.00 37.98 2.78
456 457 6.248569 ACCAGAGACCTCTTAAAACAGAAA 57.751 37.500 0.00 0.00 37.98 2.52
457 458 5.888982 ACCAGAGACCTCTTAAAACAGAA 57.111 39.130 0.00 0.00 37.98 3.02
458 459 5.509163 CGAACCAGAGACCTCTTAAAACAGA 60.509 44.000 0.00 0.00 37.98 3.41
459 460 4.686554 CGAACCAGAGACCTCTTAAAACAG 59.313 45.833 0.00 0.00 37.98 3.16
460 461 4.342951 TCGAACCAGAGACCTCTTAAAACA 59.657 41.667 0.00 0.00 37.98 2.83
461 462 4.879598 TCGAACCAGAGACCTCTTAAAAC 58.120 43.478 0.00 0.00 37.98 2.43
462 463 5.540400 TTCGAACCAGAGACCTCTTAAAA 57.460 39.130 0.00 0.00 37.98 1.52
463 464 5.011738 ACATTCGAACCAGAGACCTCTTAAA 59.988 40.000 0.00 0.00 37.98 1.52
464 465 4.527038 ACATTCGAACCAGAGACCTCTTAA 59.473 41.667 0.00 0.00 37.98 1.85
465 466 4.087182 ACATTCGAACCAGAGACCTCTTA 58.913 43.478 0.00 0.00 37.98 2.10
466 467 2.900546 ACATTCGAACCAGAGACCTCTT 59.099 45.455 0.00 0.00 37.98 2.85
467 468 2.530701 ACATTCGAACCAGAGACCTCT 58.469 47.619 0.00 0.00 41.37 3.69
468 469 3.254892 GAACATTCGAACCAGAGACCTC 58.745 50.000 0.00 0.00 0.00 3.85
469 470 3.320673 GAACATTCGAACCAGAGACCT 57.679 47.619 0.00 0.00 0.00 3.85
483 484 7.905604 TCAGATAAGTGAATGAACGAACATT 57.094 32.000 10.38 10.38 42.19 2.71
484 485 7.905604 TTCAGATAAGTGAATGAACGAACAT 57.094 32.000 0.00 0.00 31.31 2.71
485 486 7.905604 ATTCAGATAAGTGAATGAACGAACA 57.094 32.000 0.00 0.00 43.97 3.18
541 542 8.840321 CCACGGTTATGAAGAAATATCAAGAAT 58.160 33.333 0.00 0.00 0.00 2.40
542 543 7.827236 ACCACGGTTATGAAGAAATATCAAGAA 59.173 33.333 0.00 0.00 0.00 2.52
543 544 7.335627 ACCACGGTTATGAAGAAATATCAAGA 58.664 34.615 0.00 0.00 0.00 3.02
544 545 7.553881 ACCACGGTTATGAAGAAATATCAAG 57.446 36.000 0.00 0.00 0.00 3.02
545 546 8.885722 GTTACCACGGTTATGAAGAAATATCAA 58.114 33.333 0.00 0.00 0.00 2.57
546 547 7.496591 GGTTACCACGGTTATGAAGAAATATCA 59.503 37.037 0.00 0.00 0.00 2.15
547 548 7.496591 TGGTTACCACGGTTATGAAGAAATATC 59.503 37.037 0.00 0.00 0.00 1.63
548 549 7.281549 GTGGTTACCACGGTTATGAAGAAATAT 59.718 37.037 19.33 0.00 44.95 1.28
549 550 6.594937 GTGGTTACCACGGTTATGAAGAAATA 59.405 38.462 19.33 0.00 44.95 1.40
550 551 5.413523 GTGGTTACCACGGTTATGAAGAAAT 59.586 40.000 19.33 0.00 44.95 2.17
551 552 4.756135 GTGGTTACCACGGTTATGAAGAAA 59.244 41.667 19.33 0.00 44.95 2.52
552 553 4.317488 GTGGTTACCACGGTTATGAAGAA 58.683 43.478 19.33 0.00 44.95 2.52
553 554 3.929094 GTGGTTACCACGGTTATGAAGA 58.071 45.455 19.33 0.00 44.95 2.87
567 568 1.159285 GGGCTGGTAAACGTGGTTAC 58.841 55.000 0.00 0.00 33.91 2.50
568 569 0.036590 GGGGCTGGTAAACGTGGTTA 59.963 55.000 0.00 0.00 0.00 2.85
569 570 1.228337 GGGGCTGGTAAACGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
570 571 2.433004 GGGGCTGGTAAACGTGGT 59.567 61.111 0.00 0.00 0.00 4.16
571 572 2.360726 GGGGGCTGGTAAACGTGG 60.361 66.667 0.00 0.00 0.00 4.94
585 586 1.602377 GACGCAATTTTATCGAGGGGG 59.398 52.381 0.00 0.00 0.00 5.40
586 587 2.285083 TGACGCAATTTTATCGAGGGG 58.715 47.619 0.00 0.00 0.00 4.79
587 588 4.527564 GAATGACGCAATTTTATCGAGGG 58.472 43.478 0.00 0.00 0.00 4.30
588 589 4.203828 CGAATGACGCAATTTTATCGAGG 58.796 43.478 0.00 0.00 34.51 4.63
589 590 4.203828 CCGAATGACGCAATTTTATCGAG 58.796 43.478 0.00 0.00 41.07 4.04
590 591 3.619483 ACCGAATGACGCAATTTTATCGA 59.381 39.130 0.00 0.00 41.07 3.59
591 592 3.935450 ACCGAATGACGCAATTTTATCG 58.065 40.909 0.00 0.00 41.07 2.92
592 593 5.679792 GGTAACCGAATGACGCAATTTTATC 59.320 40.000 0.00 0.00 41.07 1.75
593 594 5.124138 TGGTAACCGAATGACGCAATTTTAT 59.876 36.000 0.00 0.00 41.07 1.40
594 595 4.454847 TGGTAACCGAATGACGCAATTTTA 59.545 37.500 0.00 0.00 41.07 1.52
595 596 3.253677 TGGTAACCGAATGACGCAATTTT 59.746 39.130 0.00 0.00 41.07 1.82
596 597 2.814919 TGGTAACCGAATGACGCAATTT 59.185 40.909 0.00 0.00 41.07 1.82
597 598 2.428491 TGGTAACCGAATGACGCAATT 58.572 42.857 0.00 0.00 41.07 2.32
598 599 2.102070 TGGTAACCGAATGACGCAAT 57.898 45.000 0.00 0.00 41.07 3.56
599 600 1.801771 CTTGGTAACCGAATGACGCAA 59.198 47.619 0.00 0.00 41.07 4.85
600 601 1.001068 TCTTGGTAACCGAATGACGCA 59.999 47.619 0.00 0.00 41.07 5.24
601 602 1.392510 GTCTTGGTAACCGAATGACGC 59.607 52.381 0.00 0.00 41.07 5.19
602 603 1.997606 GGTCTTGGTAACCGAATGACG 59.002 52.381 0.00 0.00 42.18 4.35
603 604 3.329929 AGGTCTTGGTAACCGAATGAC 57.670 47.619 0.00 0.00 41.89 3.06
604 605 3.670625 CAAGGTCTTGGTAACCGAATGA 58.329 45.455 2.94 0.00 41.89 2.57
619 620 8.807118 TGAATCTGATGTATATAGACCAAGGTC 58.193 37.037 11.29 11.29 44.86 3.85
620 621 8.589338 GTGAATCTGATGTATATAGACCAAGGT 58.411 37.037 0.00 0.00 0.00 3.50
621 622 7.757173 CGTGAATCTGATGTATATAGACCAAGG 59.243 40.741 0.00 0.00 0.00 3.61
622 623 8.515414 TCGTGAATCTGATGTATATAGACCAAG 58.485 37.037 0.00 0.00 0.00 3.61
623 624 8.404107 TCGTGAATCTGATGTATATAGACCAA 57.596 34.615 0.00 0.00 0.00 3.67
624 625 7.996098 TCGTGAATCTGATGTATATAGACCA 57.004 36.000 0.00 0.00 0.00 4.02
625 626 9.347934 CTTTCGTGAATCTGATGTATATAGACC 57.652 37.037 0.00 0.00 0.00 3.85
647 651 9.464714 TCGCAACTATAAGATGTTCTATCTTTC 57.535 33.333 7.38 0.00 39.01 2.62
759 764 7.755373 ACGCGTGAGATAACTACGTAGTATATA 59.245 37.037 27.59 16.96 44.56 0.86
760 765 6.587990 ACGCGTGAGATAACTACGTAGTATAT 59.412 38.462 27.59 23.30 44.56 0.86
778 783 3.556365 TCAACATTAAAACTCACGCGTGA 59.444 39.130 36.96 36.96 38.06 4.35
826 834 9.986157 ACAATAAAAGCTATGATATCCCATGAT 57.014 29.630 0.00 0.00 34.87 2.45
920 941 4.171103 GAATCGGGGTCGGGTGGG 62.171 72.222 0.00 0.00 36.95 4.61
925 946 1.153429 GGTGAAGAATCGGGGTCGG 60.153 63.158 0.00 0.00 36.95 4.79
927 948 1.223763 GGGGTGAAGAATCGGGGTC 59.776 63.158 0.00 0.00 0.00 4.46
930 951 0.676782 GTGTGGGGTGAAGAATCGGG 60.677 60.000 0.00 0.00 0.00 5.14
933 954 1.880027 GTGTGTGTGGGGTGAAGAATC 59.120 52.381 0.00 0.00 0.00 2.52
935 956 0.916086 AGTGTGTGTGGGGTGAAGAA 59.084 50.000 0.00 0.00 0.00 2.52
936 957 0.468226 GAGTGTGTGTGGGGTGAAGA 59.532 55.000 0.00 0.00 0.00 2.87
938 959 0.843309 ATGAGTGTGTGTGGGGTGAA 59.157 50.000 0.00 0.00 0.00 3.18
939 960 0.396435 GATGAGTGTGTGTGGGGTGA 59.604 55.000 0.00 0.00 0.00 4.02
940 961 0.397941 AGATGAGTGTGTGTGGGGTG 59.602 55.000 0.00 0.00 0.00 4.61
941 962 1.072331 GAAGATGAGTGTGTGTGGGGT 59.928 52.381 0.00 0.00 0.00 4.95
942 963 1.611673 GGAAGATGAGTGTGTGTGGGG 60.612 57.143 0.00 0.00 0.00 4.96
1048 1074 4.637489 CTGCTCGATCCGGCGGAG 62.637 72.222 33.82 21.28 37.02 4.63
1103 1129 2.335712 GCCTTGTTGAAGAGCCCCG 61.336 63.158 0.00 0.00 0.00 5.73
1218 1244 0.242825 CCAGGAAGCGTTCTACGACA 59.757 55.000 3.04 0.00 46.05 4.35
1342 1368 0.101040 TTCACGTTGTCTTCGTCGGT 59.899 50.000 0.00 0.00 39.55 4.69
1421 1450 2.103042 GCCTTGTCGATGCGCTTCT 61.103 57.895 19.63 0.00 0.00 2.85
1515 1550 1.074775 AAAGAAGGCGGCCATGTCA 59.925 52.632 23.09 0.00 0.00 3.58
1524 1559 3.314388 GAGCGTGGCAAAGAAGGCG 62.314 63.158 0.00 0.00 36.77 5.52
1542 1577 1.271656 ACGTCGGTCTTTACCTTGAGG 59.728 52.381 0.00 0.00 44.35 3.86
1660 1716 4.899239 GCCGCTGCTGCTACCGAT 62.899 66.667 14.03 0.00 36.97 4.18
1758 1814 2.903855 GCCGCCATCACCATCTGG 60.904 66.667 0.00 0.00 42.17 3.86
1794 1910 1.542492 TATCTATCGCGGAGGGGAAC 58.458 55.000 6.13 0.00 42.39 3.62
1795 1911 2.100197 CATATCTATCGCGGAGGGGAA 58.900 52.381 6.13 0.00 42.39 3.97
1796 1912 1.763968 CATATCTATCGCGGAGGGGA 58.236 55.000 6.13 0.00 42.39 4.81
1797 1913 0.103208 GCATATCTATCGCGGAGGGG 59.897 60.000 6.13 0.00 42.39 4.79
1798 1914 0.817654 TGCATATCTATCGCGGAGGG 59.182 55.000 6.13 0.00 44.04 4.30
1799 1915 2.094494 ACTTGCATATCTATCGCGGAGG 60.094 50.000 6.13 0.00 0.00 4.30
1800 1916 2.919859 CACTTGCATATCTATCGCGGAG 59.080 50.000 6.13 4.17 0.00 4.63
1801 1917 2.926586 GCACTTGCATATCTATCGCGGA 60.927 50.000 6.13 0.00 41.59 5.54
1802 1918 1.391485 GCACTTGCATATCTATCGCGG 59.609 52.381 6.13 0.00 41.59 6.46
1803 1919 2.776694 GCACTTGCATATCTATCGCG 57.223 50.000 0.00 0.00 41.59 5.87
1815 1931 0.388134 CCATCTGCTGTTGCACTTGC 60.388 55.000 0.00 0.00 45.31 4.01
1816 1932 0.956633 ACCATCTGCTGTTGCACTTG 59.043 50.000 0.00 0.00 45.31 3.16
1817 1933 0.956633 CACCATCTGCTGTTGCACTT 59.043 50.000 0.00 0.00 45.31 3.16
1818 1934 0.109153 TCACCATCTGCTGTTGCACT 59.891 50.000 0.00 0.00 45.31 4.40
1819 1935 1.135489 CATCACCATCTGCTGTTGCAC 60.135 52.381 0.00 0.00 45.31 4.57
1821 1937 0.454600 CCATCACCATCTGCTGTTGC 59.545 55.000 0.00 0.00 40.20 4.17
1822 1938 2.014857 CTCCATCACCATCTGCTGTTG 58.985 52.381 0.00 0.00 0.00 3.33
1823 1939 1.911357 TCTCCATCACCATCTGCTGTT 59.089 47.619 0.00 0.00 0.00 3.16
1824 1940 1.576577 TCTCCATCACCATCTGCTGT 58.423 50.000 0.00 0.00 0.00 4.40
1825 1941 2.495084 CATCTCCATCACCATCTGCTG 58.505 52.381 0.00 0.00 0.00 4.41
1826 1942 1.202782 GCATCTCCATCACCATCTGCT 60.203 52.381 0.00 0.00 0.00 4.24
1827 1943 1.236628 GCATCTCCATCACCATCTGC 58.763 55.000 0.00 0.00 0.00 4.26
1828 1944 1.420514 AGGCATCTCCATCACCATCTG 59.579 52.381 0.00 0.00 37.29 2.90
1829 1945 1.698532 GAGGCATCTCCATCACCATCT 59.301 52.381 0.00 0.00 37.29 2.90
1830 1946 2.181954 GAGGCATCTCCATCACCATC 57.818 55.000 0.00 0.00 37.29 3.51
1847 1963 4.504916 CGAGCACCTGAGCCGGAG 62.505 72.222 5.05 0.00 34.23 4.63
1865 1981 2.959484 ATATCCATGCTCCCGGCGG 61.959 63.158 21.46 21.46 45.43 6.13
1866 1982 1.742880 CATATCCATGCTCCCGGCG 60.743 63.158 0.00 0.00 45.43 6.46
1867 1983 4.308526 CATATCCATGCTCCCGGC 57.691 61.111 0.00 0.00 42.22 6.13
1884 2000 2.871022 CTCCATCACTATCTGCTGTTGC 59.129 50.000 0.00 0.00 40.20 4.17
1885 2001 4.397481 TCTCCATCACTATCTGCTGTTG 57.603 45.455 0.00 0.00 0.00 3.33
1886 2002 4.743045 GCATCTCCATCACTATCTGCTGTT 60.743 45.833 0.00 0.00 0.00 3.16
1887 2003 3.244146 GCATCTCCATCACTATCTGCTGT 60.244 47.826 0.00 0.00 0.00 4.40
1888 2004 3.327626 GCATCTCCATCACTATCTGCTG 58.672 50.000 0.00 0.00 0.00 4.41
1889 2005 2.302445 GGCATCTCCATCACTATCTGCT 59.698 50.000 0.00 0.00 34.01 4.24
1890 2006 2.302445 AGGCATCTCCATCACTATCTGC 59.698 50.000 0.00 0.00 37.29 4.26
1891 2007 4.191033 GAGGCATCTCCATCACTATCTG 57.809 50.000 0.00 0.00 37.29 2.90
1910 2026 2.415010 CGATCACCTGAGCCGGAG 59.585 66.667 5.05 0.00 0.00 4.63
1911 2027 3.838271 GCGATCACCTGAGCCGGA 61.838 66.667 5.05 0.00 0.00 5.14
1912 2028 4.899239 GGCGATCACCTGAGCCGG 62.899 72.222 0.00 0.00 40.17 6.13
1915 2031 4.521062 AGCGGCGATCACCTGAGC 62.521 66.667 12.98 0.00 0.00 4.26
1916 2032 2.584418 CAGCGGCGATCACCTGAG 60.584 66.667 12.98 0.00 0.00 3.35
1917 2033 4.147449 CCAGCGGCGATCACCTGA 62.147 66.667 12.98 0.00 0.00 3.86
1926 2042 3.941188 ATATCCACCCCAGCGGCG 61.941 66.667 0.51 0.51 33.26 6.46
1927 2043 2.281761 CATATCCACCCCAGCGGC 60.282 66.667 0.00 0.00 33.26 6.53
1928 2044 2.281761 GCATATCCACCCCAGCGG 60.282 66.667 0.00 0.00 37.81 5.52
1929 2045 1.598962 CTGCATATCCACCCCAGCG 60.599 63.158 0.00 0.00 0.00 5.18
1930 2046 1.228367 CCTGCATATCCACCCCAGC 60.228 63.158 0.00 0.00 0.00 4.85
1931 2047 0.399454 CTCCTGCATATCCACCCCAG 59.601 60.000 0.00 0.00 0.00 4.45
1932 2048 0.030195 TCTCCTGCATATCCACCCCA 60.030 55.000 0.00 0.00 0.00 4.96
1933 2049 1.004044 CATCTCCTGCATATCCACCCC 59.996 57.143 0.00 0.00 0.00 4.95
1934 2050 2.486472 CATCTCCTGCATATCCACCC 57.514 55.000 0.00 0.00 0.00 4.61
1948 2064 1.336632 ACCTGAGCTGGAGGCATCTC 61.337 60.000 8.12 0.00 44.79 2.75
1949 2065 1.306825 ACCTGAGCTGGAGGCATCT 60.307 57.895 8.12 0.00 44.79 2.90
1950 2066 1.153208 CACCTGAGCTGGAGGCATC 60.153 63.158 8.12 0.00 44.79 3.91
1951 2067 2.677289 CCACCTGAGCTGGAGGCAT 61.677 63.158 8.12 0.00 44.79 4.40
1952 2068 3.324930 CCACCTGAGCTGGAGGCA 61.325 66.667 8.12 0.00 44.79 4.75
1953 2069 2.900106 AACCACCTGAGCTGGAGGC 61.900 63.158 0.00 0.00 40.81 4.70
1954 2070 1.002868 CAACCACCTGAGCTGGAGG 60.003 63.158 0.00 5.17 42.47 4.30
1955 2071 1.673665 GCAACCACCTGAGCTGGAG 60.674 63.158 0.00 0.00 32.55 3.86
1956 2072 2.431683 GCAACCACCTGAGCTGGA 59.568 61.111 0.00 0.00 32.55 3.86
1957 2073 2.674380 GGCAACCACCTGAGCTGG 60.674 66.667 0.00 0.00 34.62 4.85
1958 2074 3.052082 CGGCAACCACCTGAGCTG 61.052 66.667 0.00 0.00 0.00 4.24
2028 2249 6.943718 TCATTTGCATCTGCTCCATAATATCA 59.056 34.615 3.53 0.00 42.66 2.15
2082 2306 2.568956 CTGAAACTCTGTCTCCATCCCA 59.431 50.000 0.00 0.00 0.00 4.37
2100 2324 3.181484 GCATTGCCATAAGACATTGCTGA 60.181 43.478 0.00 0.00 39.10 4.26
2118 2342 4.344865 AACTCCGGTGGCGGCATT 62.345 61.111 17.19 0.13 0.00 3.56
2231 2461 4.318332 TGAGGAATTATCGTCCATGCATC 58.682 43.478 0.00 0.00 39.23 3.91
2329 2620 8.816640 AATAAGAAACGACATGAAATTTGCTT 57.183 26.923 0.00 0.00 0.00 3.91
2546 2844 4.356289 GTTGAGCCAACGTTTGTATTGTT 58.644 39.130 0.00 0.00 34.63 2.83
2835 3251 7.007723 TGAAACCCACCAGATGTTTAAGTTAT 58.992 34.615 0.00 0.00 32.67 1.89
2946 3364 4.177026 GCAGCGTCCGATGATTTCTATAT 58.823 43.478 9.36 0.00 32.62 0.86
2979 3397 1.882989 GAGCAGGCAAGTCTCGTCCT 61.883 60.000 0.00 0.00 0.00 3.85
2980 3398 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
2981 3399 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2982 3400 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
2983 3401 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
2984 3402 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
2985 3403 3.710722 CGGGGAGCAGGCAAGTCT 61.711 66.667 0.00 0.00 0.00 3.24
3003 3421 3.422303 CACGGATGGGCACACACG 61.422 66.667 12.06 12.06 35.82 4.49
3004 3422 3.737172 GCACGGATGGGCACACAC 61.737 66.667 0.00 0.00 0.00 3.82
3005 3423 3.899981 GAGCACGGATGGGCACACA 62.900 63.158 0.00 0.00 0.00 3.72
3006 3424 3.127533 GAGCACGGATGGGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
3007 3425 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
3021 3439 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
3022 3440 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
3023 3441 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
3027 3445 7.540400 TGTTTTAATCAAATCAAGCCACGTATG 59.460 33.333 0.00 0.00 0.00 2.39
3029 3447 6.971602 TGTTTTAATCAAATCAAGCCACGTA 58.028 32.000 0.00 0.00 0.00 3.57
3030 3448 5.837437 TGTTTTAATCAAATCAAGCCACGT 58.163 33.333 0.00 0.00 0.00 4.49
3031 3449 6.761731 TTGTTTTAATCAAATCAAGCCACG 57.238 33.333 0.00 0.00 31.50 4.94
3040 3458 9.430623 CCGGGACTTATTTTGTTTTAATCAAAT 57.569 29.630 0.00 0.00 35.25 2.32
3042 3460 6.869388 GCCGGGACTTATTTTGTTTTAATCAA 59.131 34.615 2.18 0.00 0.00 2.57
3043 3461 6.391537 GCCGGGACTTATTTTGTTTTAATCA 58.608 36.000 2.18 0.00 0.00 2.57
3044 3462 5.808540 GGCCGGGACTTATTTTGTTTTAATC 59.191 40.000 2.18 0.00 0.00 1.75
3045 3463 5.337733 GGGCCGGGACTTATTTTGTTTTAAT 60.338 40.000 2.18 0.00 0.00 1.40
3046 3464 4.021280 GGGCCGGGACTTATTTTGTTTTAA 60.021 41.667 2.18 0.00 0.00 1.52
3047 3465 3.510753 GGGCCGGGACTTATTTTGTTTTA 59.489 43.478 2.18 0.00 0.00 1.52
3050 3468 1.552578 GGGCCGGGACTTATTTTGTT 58.447 50.000 2.18 0.00 0.00 2.83
3051 3469 0.323999 GGGGCCGGGACTTATTTTGT 60.324 55.000 2.18 0.00 0.00 2.83
3052 3470 0.323908 TGGGGCCGGGACTTATTTTG 60.324 55.000 2.18 0.00 0.00 2.44
3053 3471 0.323999 GTGGGGCCGGGACTTATTTT 60.324 55.000 2.18 0.00 0.00 1.82
3054 3472 1.305287 GTGGGGCCGGGACTTATTT 59.695 57.895 2.18 0.00 0.00 1.40
3055 3473 2.686572 GGTGGGGCCGGGACTTATT 61.687 63.158 2.18 0.00 0.00 1.40
3056 3474 3.094498 GGTGGGGCCGGGACTTAT 61.094 66.667 2.18 0.00 0.00 1.73
3064 3482 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
3066 3484 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
3068 3486 2.159179 CCTGATTTTAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
3087 3505 6.176896 GCTTTCTAATCTAATCATCTCCCCC 58.823 44.000 0.00 0.00 0.00 5.40
3088 3506 6.773638 TGCTTTCTAATCTAATCATCTCCCC 58.226 40.000 0.00 0.00 0.00 4.81
3089 3507 8.682936 TTTGCTTTCTAATCTAATCATCTCCC 57.317 34.615 0.00 0.00 0.00 4.30
3127 4288 1.330655 CCACCTCATCCTACGGCTGT 61.331 60.000 2.42 2.42 0.00 4.40
3130 4291 1.749334 CTCCCACCTCATCCTACGGC 61.749 65.000 0.00 0.00 0.00 5.68
3134 4295 1.132721 CCATCCTCCCACCTCATCCTA 60.133 57.143 0.00 0.00 0.00 2.94
3135 4296 0.401105 CCATCCTCCCACCTCATCCT 60.401 60.000 0.00 0.00 0.00 3.24
3140 4301 1.422161 CCCATCCATCCTCCCACCTC 61.422 65.000 0.00 0.00 0.00 3.85
3141 4302 1.386485 CCCATCCATCCTCCCACCT 60.386 63.158 0.00 0.00 0.00 4.00
3142 4303 1.385915 TCCCATCCATCCTCCCACC 60.386 63.158 0.00 0.00 0.00 4.61
3144 4305 1.771746 GCTCCCATCCATCCTCCCA 60.772 63.158 0.00 0.00 0.00 4.37
3145 4306 1.138863 ATGCTCCCATCCATCCTCCC 61.139 60.000 0.00 0.00 0.00 4.30
3154 4315 2.838467 CCCTCCCCATGCTCCCATC 61.838 68.421 0.00 0.00 0.00 3.51
3155 4316 2.780040 CCCTCCCCATGCTCCCAT 60.780 66.667 0.00 0.00 0.00 4.00
3156 4317 4.037413 TCCCTCCCCATGCTCCCA 62.037 66.667 0.00 0.00 0.00 4.37
3159 4320 1.124477 CCTACTCCCTCCCCATGCTC 61.124 65.000 0.00 0.00 0.00 4.26
3160 4321 1.074167 CCTACTCCCTCCCCATGCT 60.074 63.158 0.00 0.00 0.00 3.79
3161 4322 2.823758 GCCTACTCCCTCCCCATGC 61.824 68.421 0.00 0.00 0.00 4.06
3162 4323 0.988145 TTGCCTACTCCCTCCCCATG 60.988 60.000 0.00 0.00 0.00 3.66
3163 4324 0.695803 CTTGCCTACTCCCTCCCCAT 60.696 60.000 0.00 0.00 0.00 4.00
3164 4325 1.306997 CTTGCCTACTCCCTCCCCA 60.307 63.158 0.00 0.00 0.00 4.96
3165 4326 2.747443 GCTTGCCTACTCCCTCCCC 61.747 68.421 0.00 0.00 0.00 4.81
3167 4328 1.977293 CTGGCTTGCCTACTCCCTCC 61.977 65.000 13.18 0.00 0.00 4.30
3168 4329 0.978146 TCTGGCTTGCCTACTCCCTC 60.978 60.000 13.18 0.00 0.00 4.30
3170 4331 0.107643 GATCTGGCTTGCCTACTCCC 59.892 60.000 13.18 0.00 0.00 4.30
3171 4332 0.107643 GGATCTGGCTTGCCTACTCC 59.892 60.000 13.18 11.17 0.00 3.85
3172 4333 0.107643 GGGATCTGGCTTGCCTACTC 59.892 60.000 13.18 6.33 0.00 2.59
3173 4334 0.327000 AGGGATCTGGCTTGCCTACT 60.327 55.000 13.18 0.00 32.48 2.57
3174 4335 0.548510 AAGGGATCTGGCTTGCCTAC 59.451 55.000 13.18 2.05 33.20 3.18
3175 4336 0.548031 CAAGGGATCTGGCTTGCCTA 59.452 55.000 13.18 1.63 33.20 3.93
3176 4337 1.305623 CAAGGGATCTGGCTTGCCT 59.694 57.895 13.18 0.00 36.33 4.75
3177 4338 2.421399 GCAAGGGATCTGGCTTGCC 61.421 63.158 0.00 4.43 44.29 4.52
3180 4341 2.685999 GGGCAAGGGATCTGGCTT 59.314 61.111 6.90 0.00 39.86 4.35
3181 4342 3.424105 GGGGCAAGGGATCTGGCT 61.424 66.667 6.90 0.00 39.86 4.75
3182 4343 3.743017 TGGGGCAAGGGATCTGGC 61.743 66.667 0.00 0.00 39.23 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.