Multiple sequence alignment - TraesCS3A01G527100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G527100 chr3A 100.000 2794 0 0 1 2794 741178614 741175821 0.000000e+00 5160
1 TraesCS3A01G527100 chr3A 93.790 628 37 2 1 627 33164394 33165020 0.000000e+00 942
2 TraesCS3A01G527100 chr7A 97.180 2163 59 2 633 2794 704256925 704259086 0.000000e+00 3655
3 TraesCS3A01G527100 chr7A 93.136 641 41 3 1 639 105422669 105422030 0.000000e+00 937
4 TraesCS3A01G527100 chr1A 96.770 2167 68 2 630 2794 376489593 376491759 0.000000e+00 3613
5 TraesCS3A01G527100 chr1A 94.550 2110 94 8 633 2739 549429753 549431844 0.000000e+00 3240
6 TraesCS3A01G527100 chr1A 93.471 628 39 2 1 627 267351014 267351640 0.000000e+00 931
7 TraesCS3A01G527100 chr5A 96.490 2165 74 2 632 2794 509128606 509130770 0.000000e+00 3576
8 TraesCS3A01G527100 chr6A 96.443 2165 65 4 632 2794 558828813 558830967 0.000000e+00 3561
9 TraesCS3A01G527100 chr6A 95.799 2166 85 6 633 2794 532336336 532334173 0.000000e+00 3491
10 TraesCS3A01G527100 chr6A 94.268 628 33 3 1 627 27103266 27103891 0.000000e+00 957
11 TraesCS3A01G527100 chr6A 93.060 634 42 2 1 633 613601735 613602367 0.000000e+00 926
12 TraesCS3A01G527100 chr6A 88.889 171 11 6 2479 2643 532334440 532334272 1.310000e-48 204
13 TraesCS3A01G527100 chr4A 96.440 2163 55 2 633 2794 37984867 37982726 0.000000e+00 3548
14 TraesCS3A01G527100 chr3D 93.471 1991 104 6 633 2603 374010878 374008894 0.000000e+00 2933
15 TraesCS3A01G527100 chr2D 93.512 1973 114 9 633 2595 633747075 633749043 0.000000e+00 2922
16 TraesCS3A01G527100 chr2D 85.556 270 17 14 2528 2794 207004388 207004138 2.130000e-66 263
17 TraesCS3A01G527100 chr2D 85.185 270 18 14 2528 2794 535664165 535664415 9.930000e-65 257
18 TraesCS3A01G527100 chr2D 85.778 225 21 8 2577 2794 633748921 633749141 7.790000e-56 228
19 TraesCS3A01G527100 chr2A 93.780 627 39 0 1 627 766855365 766855991 0.000000e+00 942
20 TraesCS3A01G527100 chr2B 93.375 634 41 1 1 633 545363683 545364316 0.000000e+00 937
21 TraesCS3A01G527100 chr6B 93.207 633 42 1 1 633 43066091 43066722 0.000000e+00 929
22 TraesCS3A01G527100 chr3B 93.071 635 42 2 1 633 127303308 127302674 0.000000e+00 928


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G527100 chr3A 741175821 741178614 2793 True 5160.0 5160 100.000 1 2794 1 chr3A.!!$R1 2793
1 TraesCS3A01G527100 chr3A 33164394 33165020 626 False 942.0 942 93.790 1 627 1 chr3A.!!$F1 626
2 TraesCS3A01G527100 chr7A 704256925 704259086 2161 False 3655.0 3655 97.180 633 2794 1 chr7A.!!$F1 2161
3 TraesCS3A01G527100 chr7A 105422030 105422669 639 True 937.0 937 93.136 1 639 1 chr7A.!!$R1 638
4 TraesCS3A01G527100 chr1A 376489593 376491759 2166 False 3613.0 3613 96.770 630 2794 1 chr1A.!!$F2 2164
5 TraesCS3A01G527100 chr1A 549429753 549431844 2091 False 3240.0 3240 94.550 633 2739 1 chr1A.!!$F3 2106
6 TraesCS3A01G527100 chr1A 267351014 267351640 626 False 931.0 931 93.471 1 627 1 chr1A.!!$F1 626
7 TraesCS3A01G527100 chr5A 509128606 509130770 2164 False 3576.0 3576 96.490 632 2794 1 chr5A.!!$F1 2162
8 TraesCS3A01G527100 chr6A 558828813 558830967 2154 False 3561.0 3561 96.443 632 2794 1 chr6A.!!$F2 2162
9 TraesCS3A01G527100 chr6A 532334173 532336336 2163 True 1847.5 3491 92.344 633 2794 2 chr6A.!!$R1 2161
10 TraesCS3A01G527100 chr6A 27103266 27103891 625 False 957.0 957 94.268 1 627 1 chr6A.!!$F1 626
11 TraesCS3A01G527100 chr6A 613601735 613602367 632 False 926.0 926 93.060 1 633 1 chr6A.!!$F3 632
12 TraesCS3A01G527100 chr4A 37982726 37984867 2141 True 3548.0 3548 96.440 633 2794 1 chr4A.!!$R1 2161
13 TraesCS3A01G527100 chr3D 374008894 374010878 1984 True 2933.0 2933 93.471 633 2603 1 chr3D.!!$R1 1970
14 TraesCS3A01G527100 chr2D 633747075 633749141 2066 False 1575.0 2922 89.645 633 2794 2 chr2D.!!$F2 2161
15 TraesCS3A01G527100 chr2A 766855365 766855991 626 False 942.0 942 93.780 1 627 1 chr2A.!!$F1 626
16 TraesCS3A01G527100 chr2B 545363683 545364316 633 False 937.0 937 93.375 1 633 1 chr2B.!!$F1 632
17 TraesCS3A01G527100 chr6B 43066091 43066722 631 False 929.0 929 93.207 1 633 1 chr6B.!!$F1 632
18 TraesCS3A01G527100 chr3B 127302674 127303308 634 True 928.0 928 93.071 1 633 1 chr3B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 489 0.033642 GCGGTACTCAGGGGATAAGC 59.966 60.0 0.0 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1900 1.144913 TGGTTTACCTCAAGCTGGCTT 59.855 47.619 1.6 1.6 36.82 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.985847 GCAGTGGGGGTTGAGTGC 60.986 66.667 0.00 0.00 0.00 4.40
187 189 4.045104 CGAATTTGACTCGGGATGACTAG 58.955 47.826 0.00 0.00 32.62 2.57
310 312 1.668751 GTTCACTTTCACGCAGGTCAA 59.331 47.619 0.00 0.00 0.00 3.18
353 358 1.831736 ACGGATACTCTGGAAGTTGGG 59.168 52.381 0.00 0.00 39.55 4.12
354 359 2.108168 CGGATACTCTGGAAGTTGGGA 58.892 52.381 0.00 0.00 39.55 4.37
355 360 2.101582 CGGATACTCTGGAAGTTGGGAG 59.898 54.545 0.00 0.00 39.55 4.30
356 361 2.158885 GGATACTCTGGAAGTTGGGAGC 60.159 54.545 0.00 0.00 39.55 4.70
357 362 2.024176 TACTCTGGAAGTTGGGAGCA 57.976 50.000 0.00 0.00 39.55 4.26
358 363 0.398318 ACTCTGGAAGTTGGGAGCAC 59.602 55.000 0.00 0.00 33.03 4.40
359 364 0.397941 CTCTGGAAGTTGGGAGCACA 59.602 55.000 0.00 0.00 33.76 4.57
360 365 0.108585 TCTGGAAGTTGGGAGCACAC 59.891 55.000 0.00 0.00 33.76 3.82
361 366 0.179020 CTGGAAGTTGGGAGCACACA 60.179 55.000 0.00 0.00 0.00 3.72
362 367 0.465460 TGGAAGTTGGGAGCACACAC 60.465 55.000 0.00 0.00 0.00 3.82
363 368 0.179018 GGAAGTTGGGAGCACACACT 60.179 55.000 0.00 0.00 0.00 3.55
364 369 1.071699 GGAAGTTGGGAGCACACACTA 59.928 52.381 0.00 0.00 0.00 2.74
365 370 2.417719 GAAGTTGGGAGCACACACTAG 58.582 52.381 0.00 0.00 0.00 2.57
366 371 1.717032 AGTTGGGAGCACACACTAGA 58.283 50.000 0.00 0.00 0.00 2.43
367 372 1.620819 AGTTGGGAGCACACACTAGAG 59.379 52.381 0.00 0.00 0.00 2.43
368 373 1.344763 GTTGGGAGCACACACTAGAGT 59.655 52.381 0.00 0.00 0.00 3.24
369 374 2.561419 GTTGGGAGCACACACTAGAGTA 59.439 50.000 0.00 0.00 0.00 2.59
370 375 2.884320 TGGGAGCACACACTAGAGTAA 58.116 47.619 0.00 0.00 0.00 2.24
371 376 3.236047 TGGGAGCACACACTAGAGTAAA 58.764 45.455 0.00 0.00 0.00 2.01
372 377 3.258372 TGGGAGCACACACTAGAGTAAAG 59.742 47.826 0.00 0.00 0.00 1.85
373 378 3.510360 GGGAGCACACACTAGAGTAAAGA 59.490 47.826 0.00 0.00 0.00 2.52
374 379 4.381079 GGGAGCACACACTAGAGTAAAGAG 60.381 50.000 0.00 0.00 0.00 2.85
375 380 4.381079 GGAGCACACACTAGAGTAAAGAGG 60.381 50.000 0.00 0.00 0.00 3.69
376 381 4.408276 AGCACACACTAGAGTAAAGAGGA 58.592 43.478 0.00 0.00 0.00 3.71
377 382 4.833380 AGCACACACTAGAGTAAAGAGGAA 59.167 41.667 0.00 0.00 0.00 3.36
378 383 4.924462 GCACACACTAGAGTAAAGAGGAAC 59.076 45.833 0.00 0.00 0.00 3.62
380 385 6.739008 GCACACACTAGAGTAAAGAGGAACTT 60.739 42.308 0.00 0.00 41.55 2.66
381 386 7.523380 GCACACACTAGAGTAAAGAGGAACTTA 60.523 40.741 0.00 0.00 41.55 2.24
382 387 8.358148 CACACACTAGAGTAAAGAGGAACTTAA 58.642 37.037 0.00 0.00 41.55 1.85
383 388 9.091220 ACACACTAGAGTAAAGAGGAACTTAAT 57.909 33.333 0.00 0.00 41.55 1.40
384 389 9.930693 CACACTAGAGTAAAGAGGAACTTAATT 57.069 33.333 0.00 0.00 41.55 1.40
389 394 8.926092 AGAGTAAAGAGGAACTTAATTTTGCT 57.074 30.769 0.00 0.00 41.55 3.91
390 395 9.004717 AGAGTAAAGAGGAACTTAATTTTGCTC 57.995 33.333 9.30 9.30 41.55 4.26
391 396 7.807680 AGTAAAGAGGAACTTAATTTTGCTCG 58.192 34.615 10.80 0.00 43.96 5.03
392 397 6.877611 AAAGAGGAACTTAATTTTGCTCGA 57.122 33.333 10.80 0.00 43.96 4.04
393 398 6.487689 AAGAGGAACTTAATTTTGCTCGAG 57.512 37.500 8.45 8.45 43.96 4.04
394 399 5.552178 AGAGGAACTTAATTTTGCTCGAGT 58.448 37.500 15.13 0.00 43.96 4.18
395 400 5.409826 AGAGGAACTTAATTTTGCTCGAGTG 59.590 40.000 15.13 0.00 43.96 3.51
396 401 5.063880 AGGAACTTAATTTTGCTCGAGTGT 58.936 37.500 15.13 0.00 27.25 3.55
397 402 5.531287 AGGAACTTAATTTTGCTCGAGTGTT 59.469 36.000 15.13 4.93 27.25 3.32
398 403 5.625311 GGAACTTAATTTTGCTCGAGTGTTG 59.375 40.000 15.13 0.00 0.00 3.33
399 404 6.371809 AACTTAATTTTGCTCGAGTGTTGA 57.628 33.333 15.13 0.00 0.00 3.18
400 405 5.748592 ACTTAATTTTGCTCGAGTGTTGAC 58.251 37.500 15.13 0.00 0.00 3.18
401 406 5.527582 ACTTAATTTTGCTCGAGTGTTGACT 59.472 36.000 15.13 0.00 33.98 3.41
402 407 3.885484 ATTTTGCTCGAGTGTTGACTG 57.115 42.857 15.13 0.00 30.16 3.51
403 408 2.309528 TTTGCTCGAGTGTTGACTGT 57.690 45.000 15.13 0.00 30.16 3.55
404 409 1.570813 TTGCTCGAGTGTTGACTGTG 58.429 50.000 15.13 0.00 30.16 3.66
405 410 0.249447 TGCTCGAGTGTTGACTGTGG 60.249 55.000 15.13 0.00 30.16 4.17
406 411 0.249489 GCTCGAGTGTTGACTGTGGT 60.249 55.000 15.13 0.00 30.16 4.16
407 412 1.772182 CTCGAGTGTTGACTGTGGTC 58.228 55.000 3.62 0.00 42.42 4.02
417 422 3.924114 TGACTGTGGTCAGAAAAAGGA 57.076 42.857 2.17 0.00 46.19 3.36
418 423 3.808728 TGACTGTGGTCAGAAAAAGGAG 58.191 45.455 2.17 0.00 46.19 3.69
419 424 3.142174 GACTGTGGTCAGAAAAAGGAGG 58.858 50.000 2.17 0.00 43.76 4.30
420 425 2.158608 ACTGTGGTCAGAAAAAGGAGGG 60.159 50.000 2.17 0.00 43.76 4.30
421 426 2.106511 CTGTGGTCAGAAAAAGGAGGGA 59.893 50.000 0.00 0.00 43.76 4.20
422 427 2.158667 TGTGGTCAGAAAAAGGAGGGAC 60.159 50.000 0.00 0.00 0.00 4.46
423 428 6.271800 CTGTGGTCAGAAAAAGGAGGGACT 62.272 50.000 0.00 0.00 43.20 3.85
424 429 3.326880 GTGGTCAGAAAAAGGAGGGACTA 59.673 47.826 0.00 0.00 41.55 2.59
425 430 3.326880 TGGTCAGAAAAAGGAGGGACTAC 59.673 47.826 0.00 0.00 41.55 2.73
426 431 3.326880 GGTCAGAAAAAGGAGGGACTACA 59.673 47.826 0.00 0.00 46.07 2.74
427 432 4.202430 GGTCAGAAAAAGGAGGGACTACAA 60.202 45.833 0.00 0.00 46.07 2.41
428 433 4.998033 GTCAGAAAAAGGAGGGACTACAAG 59.002 45.833 0.00 0.00 46.07 3.16
429 434 4.658901 TCAGAAAAAGGAGGGACTACAAGT 59.341 41.667 0.00 0.00 46.07 3.16
430 435 5.132144 TCAGAAAAAGGAGGGACTACAAGTT 59.868 40.000 0.00 0.00 46.07 2.66
431 436 5.239525 CAGAAAAAGGAGGGACTACAAGTTG 59.760 44.000 0.00 0.00 46.07 3.16
432 437 4.790718 AAAAGGAGGGACTACAAGTTGT 57.209 40.909 14.05 14.05 46.07 3.32
433 438 5.899631 AAAAGGAGGGACTACAAGTTGTA 57.100 39.130 14.85 14.85 46.07 2.41
443 448 4.866508 CTACAAGTTGTAGGTGGAGTCA 57.133 45.455 28.35 1.89 44.90 3.41
444 449 3.470645 ACAAGTTGTAGGTGGAGTCAC 57.529 47.619 6.75 0.00 42.91 3.67
445 450 2.769663 ACAAGTTGTAGGTGGAGTCACA 59.230 45.455 6.75 0.00 45.32 3.58
446 451 3.391296 ACAAGTTGTAGGTGGAGTCACAT 59.609 43.478 6.75 0.00 45.32 3.21
447 452 3.685139 AGTTGTAGGTGGAGTCACATG 57.315 47.619 0.00 0.00 45.32 3.21
448 453 2.303022 AGTTGTAGGTGGAGTCACATGG 59.697 50.000 0.00 0.00 45.32 3.66
449 454 2.301870 GTTGTAGGTGGAGTCACATGGA 59.698 50.000 0.00 0.00 45.32 3.41
450 455 2.179427 TGTAGGTGGAGTCACATGGAG 58.821 52.381 0.00 0.00 45.32 3.86
451 456 2.180276 GTAGGTGGAGTCACATGGAGT 58.820 52.381 0.00 0.00 45.32 3.85
452 457 1.270907 AGGTGGAGTCACATGGAGTC 58.729 55.000 0.00 4.19 45.32 3.36
453 458 1.203237 AGGTGGAGTCACATGGAGTCT 60.203 52.381 14.74 3.74 45.32 3.24
454 459 1.625818 GGTGGAGTCACATGGAGTCTT 59.374 52.381 14.74 0.00 45.32 3.01
455 460 2.039084 GGTGGAGTCACATGGAGTCTTT 59.961 50.000 14.74 0.00 45.32 2.52
456 461 3.070018 GTGGAGTCACATGGAGTCTTTG 58.930 50.000 14.74 0.00 44.09 2.77
457 462 2.038952 TGGAGTCACATGGAGTCTTTGG 59.961 50.000 14.74 0.00 44.09 3.28
458 463 2.303022 GGAGTCACATGGAGTCTTTGGA 59.697 50.000 14.74 0.00 44.09 3.53
459 464 3.594134 GAGTCACATGGAGTCTTTGGAG 58.406 50.000 0.00 0.00 41.84 3.86
460 465 2.975489 AGTCACATGGAGTCTTTGGAGT 59.025 45.455 0.00 0.00 0.00 3.85
461 466 4.160329 AGTCACATGGAGTCTTTGGAGTA 58.840 43.478 0.00 0.00 0.00 2.59
462 467 4.221703 AGTCACATGGAGTCTTTGGAGTAG 59.778 45.833 0.00 0.00 0.00 2.57
463 468 4.021016 GTCACATGGAGTCTTTGGAGTAGT 60.021 45.833 0.00 0.00 0.00 2.73
464 469 5.185249 GTCACATGGAGTCTTTGGAGTAGTA 59.815 44.000 0.00 0.00 0.00 1.82
465 470 5.419155 TCACATGGAGTCTTTGGAGTAGTAG 59.581 44.000 0.00 0.00 0.00 2.57
466 471 4.160626 ACATGGAGTCTTTGGAGTAGTAGC 59.839 45.833 0.00 0.00 0.00 3.58
467 472 2.753452 TGGAGTCTTTGGAGTAGTAGCG 59.247 50.000 0.00 0.00 0.00 4.26
468 473 2.099427 GGAGTCTTTGGAGTAGTAGCGG 59.901 54.545 0.00 0.00 0.00 5.52
469 474 2.754002 GAGTCTTTGGAGTAGTAGCGGT 59.246 50.000 0.00 0.00 0.00 5.68
470 475 3.944015 GAGTCTTTGGAGTAGTAGCGGTA 59.056 47.826 0.00 0.00 0.00 4.02
471 476 3.693578 AGTCTTTGGAGTAGTAGCGGTAC 59.306 47.826 16.85 16.85 0.00 3.34
472 477 3.693578 GTCTTTGGAGTAGTAGCGGTACT 59.306 47.826 28.36 28.36 42.49 2.73
473 478 3.944015 TCTTTGGAGTAGTAGCGGTACTC 59.056 47.826 29.09 17.79 43.91 2.59
474 479 3.354948 TTGGAGTAGTAGCGGTACTCA 57.645 47.619 29.09 18.31 45.66 3.41
475 480 2.915349 TGGAGTAGTAGCGGTACTCAG 58.085 52.381 29.09 0.00 45.66 3.35
476 481 2.220313 GGAGTAGTAGCGGTACTCAGG 58.780 57.143 29.09 0.00 45.66 3.86
477 482 2.220313 GAGTAGTAGCGGTACTCAGGG 58.780 57.143 29.09 0.00 44.02 4.45
478 483 1.133853 AGTAGTAGCGGTACTCAGGGG 60.134 57.143 29.09 0.00 40.23 4.79
479 484 1.133976 GTAGTAGCGGTACTCAGGGGA 60.134 57.143 29.09 9.47 40.23 4.81
480 485 0.556747 AGTAGCGGTACTCAGGGGAT 59.443 55.000 21.15 0.00 34.00 3.85
481 486 1.779092 AGTAGCGGTACTCAGGGGATA 59.221 52.381 21.15 0.00 34.00 2.59
482 487 2.176364 AGTAGCGGTACTCAGGGGATAA 59.824 50.000 21.15 0.00 34.00 1.75
483 488 1.705873 AGCGGTACTCAGGGGATAAG 58.294 55.000 0.00 0.00 0.00 1.73
484 489 0.033642 GCGGTACTCAGGGGATAAGC 59.966 60.000 0.00 0.00 0.00 3.09
485 490 1.705873 CGGTACTCAGGGGATAAGCT 58.294 55.000 0.00 0.00 0.00 3.74
486 491 2.040178 CGGTACTCAGGGGATAAGCTT 58.960 52.381 3.48 3.48 0.00 3.74
487 492 3.228453 CGGTACTCAGGGGATAAGCTTA 58.772 50.000 8.99 8.99 0.00 3.09
488 493 3.640029 CGGTACTCAGGGGATAAGCTTAA 59.360 47.826 10.85 0.00 0.00 1.85
489 494 4.262079 CGGTACTCAGGGGATAAGCTTAAG 60.262 50.000 10.85 3.94 0.00 1.85
490 495 4.654724 GGTACTCAGGGGATAAGCTTAAGT 59.345 45.833 10.85 9.81 0.00 2.24
491 496 5.221481 GGTACTCAGGGGATAAGCTTAAGTC 60.221 48.000 10.85 4.36 0.00 3.01
492 497 3.712218 ACTCAGGGGATAAGCTTAAGTCC 59.288 47.826 15.21 15.21 0.00 3.85
493 498 3.711704 CTCAGGGGATAAGCTTAAGTCCA 59.288 47.826 22.05 6.21 32.31 4.02
494 499 4.108570 TCAGGGGATAAGCTTAAGTCCAA 58.891 43.478 22.05 9.51 32.31 3.53
495 500 4.726825 TCAGGGGATAAGCTTAAGTCCAAT 59.273 41.667 22.05 10.84 32.31 3.16
496 501 4.823989 CAGGGGATAAGCTTAAGTCCAATG 59.176 45.833 22.05 16.72 32.31 2.82
497 502 4.478686 AGGGGATAAGCTTAAGTCCAATGT 59.521 41.667 22.05 5.95 32.31 2.71
498 503 5.670361 AGGGGATAAGCTTAAGTCCAATGTA 59.330 40.000 22.05 0.00 32.31 2.29
499 504 5.763698 GGGGATAAGCTTAAGTCCAATGTAC 59.236 44.000 22.05 8.22 32.31 2.90
500 505 6.354130 GGGATAAGCTTAAGTCCAATGTACA 58.646 40.000 22.05 0.00 32.31 2.90
501 506 6.998673 GGGATAAGCTTAAGTCCAATGTACAT 59.001 38.462 22.05 1.41 32.31 2.29
502 507 7.041098 GGGATAAGCTTAAGTCCAATGTACATG 60.041 40.741 22.05 3.84 32.31 3.21
503 508 7.715249 GGATAAGCTTAAGTCCAATGTACATGA 59.285 37.037 17.67 0.00 0.00 3.07
504 509 9.109393 GATAAGCTTAAGTCCAATGTACATGAA 57.891 33.333 10.85 0.00 0.00 2.57
505 510 7.759489 AAGCTTAAGTCCAATGTACATGAAA 57.241 32.000 9.63 0.00 0.00 2.69
506 511 7.383102 AGCTTAAGTCCAATGTACATGAAAG 57.617 36.000 9.63 5.61 0.00 2.62
507 512 6.942576 AGCTTAAGTCCAATGTACATGAAAGT 59.057 34.615 9.63 0.00 0.00 2.66
508 513 7.448469 AGCTTAAGTCCAATGTACATGAAAGTT 59.552 33.333 9.63 9.06 0.00 2.66
509 514 8.082242 GCTTAAGTCCAATGTACATGAAAGTTT 58.918 33.333 9.63 3.46 0.00 2.66
510 515 9.398170 CTTAAGTCCAATGTACATGAAAGTTTG 57.602 33.333 9.63 2.60 0.00 2.93
511 516 7.581213 AAGTCCAATGTACATGAAAGTTTGA 57.419 32.000 9.63 0.00 0.00 2.69
512 517 6.970484 AGTCCAATGTACATGAAAGTTTGAC 58.030 36.000 9.63 5.08 0.00 3.18
513 518 5.851177 GTCCAATGTACATGAAAGTTTGACG 59.149 40.000 9.63 0.00 0.00 4.35
514 519 4.616802 CCAATGTACATGAAAGTTTGACGC 59.383 41.667 9.63 0.00 0.00 5.19
515 520 5.211454 CAATGTACATGAAAGTTTGACGCA 58.789 37.500 9.63 0.00 0.00 5.24
516 521 5.627499 ATGTACATGAAAGTTTGACGCAT 57.373 34.783 7.78 0.00 0.00 4.73
517 522 5.431420 TGTACATGAAAGTTTGACGCATT 57.569 34.783 0.00 0.00 0.00 3.56
518 523 5.211454 TGTACATGAAAGTTTGACGCATTG 58.789 37.500 0.00 0.00 0.00 2.82
519 524 4.566545 ACATGAAAGTTTGACGCATTGA 57.433 36.364 0.00 0.00 0.00 2.57
520 525 4.290155 ACATGAAAGTTTGACGCATTGAC 58.710 39.130 0.00 0.00 0.00 3.18
521 526 2.980586 TGAAAGTTTGACGCATTGACG 58.019 42.857 0.00 0.00 39.50 4.35
522 527 2.609916 TGAAAGTTTGACGCATTGACGA 59.390 40.909 0.00 0.00 36.70 4.20
523 528 3.064134 TGAAAGTTTGACGCATTGACGAA 59.936 39.130 0.00 0.00 36.70 3.85
524 529 3.896648 AAGTTTGACGCATTGACGAAT 57.103 38.095 7.34 0.00 36.70 3.34
525 530 3.455619 AGTTTGACGCATTGACGAATC 57.544 42.857 7.34 0.00 36.70 2.52
526 531 2.159627 AGTTTGACGCATTGACGAATCC 59.840 45.455 7.34 0.00 36.70 3.01
527 532 1.802069 TTGACGCATTGACGAATCCA 58.198 45.000 7.34 0.00 36.70 3.41
528 533 2.022764 TGACGCATTGACGAATCCAT 57.977 45.000 7.34 0.00 36.70 3.41
529 534 3.172229 TGACGCATTGACGAATCCATA 57.828 42.857 7.34 0.00 36.70 2.74
530 535 3.526534 TGACGCATTGACGAATCCATAA 58.473 40.909 7.34 0.00 36.70 1.90
531 536 4.126437 TGACGCATTGACGAATCCATAAT 58.874 39.130 7.34 0.00 36.70 1.28
532 537 4.024977 TGACGCATTGACGAATCCATAATG 60.025 41.667 7.34 0.00 36.70 1.90
533 538 3.250762 ACGCATTGACGAATCCATAATGG 59.749 43.478 7.34 0.00 36.34 3.16
534 539 3.250762 CGCATTGACGAATCCATAATGGT 59.749 43.478 0.00 0.00 35.22 3.55
535 540 4.539870 GCATTGACGAATCCATAATGGTG 58.460 43.478 0.00 0.00 39.03 4.17
536 541 4.557296 GCATTGACGAATCCATAATGGTGG 60.557 45.833 0.00 0.00 39.03 4.61
548 553 6.721318 TCCATAATGGTGGAGAATATTAGCC 58.279 40.000 0.00 0.00 43.20 3.93
549 554 6.274436 TCCATAATGGTGGAGAATATTAGCCA 59.726 38.462 4.98 4.98 43.20 4.75
550 555 6.947733 CCATAATGGTGGAGAATATTAGCCAA 59.052 38.462 9.63 0.00 42.02 4.52
551 556 7.121759 CCATAATGGTGGAGAATATTAGCCAAG 59.878 40.741 9.63 0.00 42.02 3.61
552 557 4.437682 TGGTGGAGAATATTAGCCAAGG 57.562 45.455 9.63 0.00 31.18 3.61
553 558 3.785887 TGGTGGAGAATATTAGCCAAGGT 59.214 43.478 9.63 0.00 31.18 3.50
554 559 4.137543 GGTGGAGAATATTAGCCAAGGTG 58.862 47.826 9.63 0.00 31.18 4.00
555 560 4.137543 GTGGAGAATATTAGCCAAGGTGG 58.862 47.826 9.63 0.00 41.55 4.61
556 561 3.138283 TGGAGAATATTAGCCAAGGTGGG 59.862 47.826 6.34 0.00 38.19 4.61
557 562 3.498661 GGAGAATATTAGCCAAGGTGGGG 60.499 52.174 0.00 0.00 38.19 4.96
558 563 3.131252 AGAATATTAGCCAAGGTGGGGT 58.869 45.455 0.00 0.00 38.19 4.95
559 564 3.531814 AGAATATTAGCCAAGGTGGGGTT 59.468 43.478 0.00 0.00 38.19 4.11
560 565 4.016572 AGAATATTAGCCAAGGTGGGGTTT 60.017 41.667 0.00 0.00 38.19 3.27
561 566 1.937191 ATTAGCCAAGGTGGGGTTTG 58.063 50.000 0.00 0.00 38.19 2.93
562 567 0.558712 TTAGCCAAGGTGGGGTTTGT 59.441 50.000 0.00 0.00 38.19 2.83
563 568 0.558712 TAGCCAAGGTGGGGTTTGTT 59.441 50.000 0.00 0.00 38.19 2.83
564 569 1.048160 AGCCAAGGTGGGGTTTGTTG 61.048 55.000 0.00 0.00 38.19 3.33
565 570 2.038814 GCCAAGGTGGGGTTTGTTGG 62.039 60.000 0.00 0.00 38.19 3.77
566 571 0.397816 CCAAGGTGGGGTTTGTTGGA 60.398 55.000 0.00 0.00 40.18 3.53
567 572 1.039856 CAAGGTGGGGTTTGTTGGAG 58.960 55.000 0.00 0.00 0.00 3.86
568 573 0.634465 AAGGTGGGGTTTGTTGGAGT 59.366 50.000 0.00 0.00 0.00 3.85
569 574 0.634465 AGGTGGGGTTTGTTGGAGTT 59.366 50.000 0.00 0.00 0.00 3.01
570 575 0.750249 GGTGGGGTTTGTTGGAGTTG 59.250 55.000 0.00 0.00 0.00 3.16
571 576 1.480789 GTGGGGTTTGTTGGAGTTGT 58.519 50.000 0.00 0.00 0.00 3.32
572 577 1.136110 GTGGGGTTTGTTGGAGTTGTG 59.864 52.381 0.00 0.00 0.00 3.33
573 578 1.272760 TGGGGTTTGTTGGAGTTGTGT 60.273 47.619 0.00 0.00 0.00 3.72
574 579 1.407618 GGGGTTTGTTGGAGTTGTGTC 59.592 52.381 0.00 0.00 0.00 3.67
575 580 1.064952 GGGTTTGTTGGAGTTGTGTCG 59.935 52.381 0.00 0.00 0.00 4.35
576 581 2.011222 GGTTTGTTGGAGTTGTGTCGA 58.989 47.619 0.00 0.00 0.00 4.20
577 582 2.420722 GGTTTGTTGGAGTTGTGTCGAA 59.579 45.455 0.00 0.00 0.00 3.71
578 583 3.066203 GGTTTGTTGGAGTTGTGTCGAAT 59.934 43.478 0.00 0.00 0.00 3.34
579 584 4.273969 GGTTTGTTGGAGTTGTGTCGAATA 59.726 41.667 0.00 0.00 0.00 1.75
580 585 5.048991 GGTTTGTTGGAGTTGTGTCGAATAT 60.049 40.000 0.00 0.00 0.00 1.28
581 586 6.148150 GGTTTGTTGGAGTTGTGTCGAATATA 59.852 38.462 0.00 0.00 0.00 0.86
582 587 6.961359 TTGTTGGAGTTGTGTCGAATATAG 57.039 37.500 0.00 0.00 0.00 1.31
583 588 6.032956 TGTTGGAGTTGTGTCGAATATAGT 57.967 37.500 0.00 0.00 0.00 2.12
584 589 5.867174 TGTTGGAGTTGTGTCGAATATAGTG 59.133 40.000 0.00 0.00 0.00 2.74
585 590 5.654603 TGGAGTTGTGTCGAATATAGTGT 57.345 39.130 0.00 0.00 0.00 3.55
586 591 6.762702 TGGAGTTGTGTCGAATATAGTGTA 57.237 37.500 0.00 0.00 0.00 2.90
587 592 6.558009 TGGAGTTGTGTCGAATATAGTGTAC 58.442 40.000 0.00 0.00 0.00 2.90
588 593 5.680229 GGAGTTGTGTCGAATATAGTGTACG 59.320 44.000 0.00 0.00 0.00 3.67
589 594 6.426980 AGTTGTGTCGAATATAGTGTACGA 57.573 37.500 0.00 0.00 0.00 3.43
590 595 6.484540 AGTTGTGTCGAATATAGTGTACGAG 58.515 40.000 0.00 0.00 33.82 4.18
591 596 5.413969 TGTGTCGAATATAGTGTACGAGG 57.586 43.478 0.00 0.00 33.82 4.63
592 597 4.877823 TGTGTCGAATATAGTGTACGAGGT 59.122 41.667 0.00 0.00 33.82 3.85
593 598 6.048509 TGTGTCGAATATAGTGTACGAGGTA 58.951 40.000 0.00 0.00 33.82 3.08
594 599 6.201615 TGTGTCGAATATAGTGTACGAGGTAG 59.798 42.308 0.00 0.00 33.82 3.18
595 600 5.698089 TGTCGAATATAGTGTACGAGGTAGG 59.302 44.000 0.00 0.00 33.82 3.18
596 601 5.698545 GTCGAATATAGTGTACGAGGTAGGT 59.301 44.000 0.00 0.00 33.82 3.08
597 602 6.203723 GTCGAATATAGTGTACGAGGTAGGTT 59.796 42.308 0.00 0.00 33.82 3.50
598 603 7.385205 GTCGAATATAGTGTACGAGGTAGGTTA 59.615 40.741 0.00 0.00 33.82 2.85
599 604 7.385205 TCGAATATAGTGTACGAGGTAGGTTAC 59.615 40.741 0.00 0.00 0.00 2.50
600 605 7.171508 CGAATATAGTGTACGAGGTAGGTTACA 59.828 40.741 0.00 0.00 0.00 2.41
601 606 8.752005 AATATAGTGTACGAGGTAGGTTACAA 57.248 34.615 0.00 0.00 0.00 2.41
602 607 8.930846 ATATAGTGTACGAGGTAGGTTACAAT 57.069 34.615 0.00 0.00 0.00 2.71
603 608 5.990120 AGTGTACGAGGTAGGTTACAATT 57.010 39.130 0.00 0.00 0.00 2.32
604 609 5.717119 AGTGTACGAGGTAGGTTACAATTG 58.283 41.667 3.24 3.24 0.00 2.32
605 610 4.866486 GTGTACGAGGTAGGTTACAATTGG 59.134 45.833 10.83 0.00 0.00 3.16
606 611 4.771577 TGTACGAGGTAGGTTACAATTGGA 59.228 41.667 10.83 0.00 0.00 3.53
607 612 4.198028 ACGAGGTAGGTTACAATTGGAC 57.802 45.455 10.83 7.95 0.00 4.02
608 613 3.836562 ACGAGGTAGGTTACAATTGGACT 59.163 43.478 10.83 4.72 0.00 3.85
609 614 4.285260 ACGAGGTAGGTTACAATTGGACTT 59.715 41.667 10.83 7.18 0.00 3.01
610 615 4.630069 CGAGGTAGGTTACAATTGGACTTG 59.370 45.833 10.83 0.00 0.00 3.16
611 616 5.557866 GAGGTAGGTTACAATTGGACTTGT 58.442 41.667 10.83 0.00 41.95 3.16
612 617 6.572898 CGAGGTAGGTTACAATTGGACTTGTA 60.573 42.308 10.83 0.00 39.88 2.41
613 618 6.708285 AGGTAGGTTACAATTGGACTTGTAG 58.292 40.000 10.83 0.00 41.32 2.74
614 619 6.271624 AGGTAGGTTACAATTGGACTTGTAGT 59.728 38.462 10.83 0.00 41.32 2.73
615 620 6.938596 GGTAGGTTACAATTGGACTTGTAGTT 59.061 38.462 10.83 0.00 41.32 2.24
616 621 6.877611 AGGTTACAATTGGACTTGTAGTTG 57.122 37.500 10.83 0.00 41.32 3.16
617 622 6.362248 AGGTTACAATTGGACTTGTAGTTGT 58.638 36.000 10.83 0.00 41.32 3.32
618 623 7.511268 AGGTTACAATTGGACTTGTAGTTGTA 58.489 34.615 10.83 0.00 41.32 2.41
619 624 8.161425 AGGTTACAATTGGACTTGTAGTTGTAT 58.839 33.333 10.83 0.00 41.32 2.29
620 625 8.448615 GGTTACAATTGGACTTGTAGTTGTATC 58.551 37.037 10.83 0.00 41.32 2.24
621 626 6.721571 ACAATTGGACTTGTAGTTGTATCG 57.278 37.500 10.83 0.00 37.58 2.92
622 627 6.228258 ACAATTGGACTTGTAGTTGTATCGT 58.772 36.000 10.83 0.00 37.58 3.73
623 628 6.147164 ACAATTGGACTTGTAGTTGTATCGTG 59.853 38.462 10.83 0.00 37.58 4.35
624 629 4.859304 TGGACTTGTAGTTGTATCGTGT 57.141 40.909 0.00 0.00 0.00 4.49
625 630 5.204409 TGGACTTGTAGTTGTATCGTGTT 57.796 39.130 0.00 0.00 0.00 3.32
626 631 5.603596 TGGACTTGTAGTTGTATCGTGTTT 58.396 37.500 0.00 0.00 0.00 2.83
627 632 5.693104 TGGACTTGTAGTTGTATCGTGTTTC 59.307 40.000 0.00 0.00 0.00 2.78
628 633 5.164119 GGACTTGTAGTTGTATCGTGTTTCG 60.164 44.000 0.00 0.00 41.41 3.46
721 726 0.734889 CAAAAGCCATCGCGGATTCT 59.265 50.000 6.13 0.00 44.73 2.40
813 818 2.455674 ATATGCGTGACATGGCGTAT 57.544 45.000 12.60 12.60 40.06 3.06
814 819 3.586100 ATATGCGTGACATGGCGTATA 57.414 42.857 15.16 15.16 39.05 1.47
896 901 4.148825 GCGCCCGACCACATCTCT 62.149 66.667 0.00 0.00 0.00 3.10
921 926 0.961753 TTTCTCTGCTCTCACGCTCA 59.038 50.000 0.00 0.00 0.00 4.26
930 935 2.899976 CTCTCACGCTCACTCTCTCTA 58.100 52.381 0.00 0.00 0.00 2.43
982 987 1.208844 TCCTCTCCTCTCCGGTCACT 61.209 60.000 0.00 0.00 0.00 3.41
1034 1039 3.059990 CGACAGTGAGAGCACAGACGA 62.060 57.143 0.00 0.00 46.31 4.20
1068 1073 1.090625 ACATCTCCTCCGACGACTCG 61.091 60.000 0.00 0.00 39.83 4.18
1119 1124 6.940298 CCTCATTTCTGTTCTAGGGTTTGTAA 59.060 38.462 0.00 0.00 0.00 2.41
1146 1151 5.771469 TGAACATTTGCTCGATTTGAACAT 58.229 33.333 0.00 0.00 0.00 2.71
1279 1284 3.317455 TGCATTTGAGGGGATAAGCAT 57.683 42.857 0.00 0.00 0.00 3.79
1313 1318 1.024271 TTGCTTGTGCCACTGAAGTC 58.976 50.000 0.00 0.00 38.71 3.01
1348 1353 7.517614 TGTGTTTGTAGCATTCCAATTCTTA 57.482 32.000 0.00 0.00 0.00 2.10
1399 1404 7.970102 TGTTCTAGGGTTCATAGTTACTGTTT 58.030 34.615 0.00 0.00 0.00 2.83
1644 1707 4.040952 GGATTAGTGCAGTGGGTAGATGAT 59.959 45.833 3.69 0.00 0.00 2.45
1773 1837 6.866480 ACACAATCTCACACAACAGAAAAAT 58.134 32.000 0.00 0.00 0.00 1.82
1804 1868 5.879223 CAGGAGACATATGAGAAGCTTGTTT 59.121 40.000 10.38 0.00 0.00 2.83
1836 1900 7.610305 GTGAACAACCTCTTGGATTATAAGGAA 59.390 37.037 0.00 0.00 37.04 3.36
1844 1908 4.796110 TGGATTATAAGGAAAGCCAGCT 57.204 40.909 0.00 0.00 37.47 4.24
2030 2096 5.568620 AAGGAGAAGGAAAAGTTGAGCTA 57.431 39.130 0.00 0.00 0.00 3.32
2079 2145 3.733337 TGCTGACCTGAAGAAAGAGAAC 58.267 45.455 0.00 0.00 0.00 3.01
2118 2184 4.530875 AGAAGGATAAGCTGGATTGTTGG 58.469 43.478 0.00 0.00 0.00 3.77
2164 2230 3.008485 GGAGAAGTTGACCATGGAGAAGT 59.992 47.826 21.47 10.25 0.00 3.01
2287 2353 2.997980 TGTTGTCTGACCATGTGTGTT 58.002 42.857 5.17 0.00 0.00 3.32
2387 2453 4.458989 TGTAGCAATGAACCTTGGATTGTC 59.541 41.667 0.00 0.00 31.03 3.18
2466 2533 7.013178 TCAGTTTGTGATGAATTAACAGCTTGA 59.987 33.333 0.00 0.00 0.00 3.02
2710 2781 6.293244 GGCAAACTAACATACTGACGAAACTT 60.293 38.462 0.00 0.00 0.00 2.66
2772 2843 3.586618 ACTCCTCCTTCTTCAGCATCTTT 59.413 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 189 3.004315 TGAAGGAATTTCACCGTTGCTTC 59.996 43.478 10.98 10.98 46.51 3.86
310 312 3.548745 ACATCATCACACACCGATCAT 57.451 42.857 0.00 0.00 0.00 2.45
353 358 4.459685 TCCTCTTTACTCTAGTGTGTGCTC 59.540 45.833 7.70 0.00 0.00 4.26
354 359 4.408276 TCCTCTTTACTCTAGTGTGTGCT 58.592 43.478 7.70 0.00 0.00 4.40
355 360 4.785511 TCCTCTTTACTCTAGTGTGTGC 57.214 45.455 7.70 0.00 0.00 4.57
356 361 6.334102 AGTTCCTCTTTACTCTAGTGTGTG 57.666 41.667 7.70 0.00 0.00 3.82
357 362 6.980416 AAGTTCCTCTTTACTCTAGTGTGT 57.020 37.500 7.70 0.04 31.57 3.72
358 363 9.930693 AATTAAGTTCCTCTTTACTCTAGTGTG 57.069 33.333 7.70 0.00 37.56 3.82
364 369 8.926092 AGCAAAATTAAGTTCCTCTTTACTCT 57.074 30.769 0.00 0.00 37.56 3.24
365 370 7.958025 CGAGCAAAATTAAGTTCCTCTTTACTC 59.042 37.037 11.81 0.00 37.56 2.59
366 371 7.660208 TCGAGCAAAATTAAGTTCCTCTTTACT 59.340 33.333 11.81 0.00 37.56 2.24
367 372 7.803724 TCGAGCAAAATTAAGTTCCTCTTTAC 58.196 34.615 11.81 0.00 37.56 2.01
368 373 7.660208 ACTCGAGCAAAATTAAGTTCCTCTTTA 59.340 33.333 13.61 1.67 37.56 1.85
369 374 6.486993 ACTCGAGCAAAATTAAGTTCCTCTTT 59.513 34.615 13.61 0.00 37.56 2.52
370 375 5.998363 ACTCGAGCAAAATTAAGTTCCTCTT 59.002 36.000 13.61 0.00 39.89 2.85
371 376 5.409826 CACTCGAGCAAAATTAAGTTCCTCT 59.590 40.000 13.61 1.22 0.00 3.69
372 377 5.179555 ACACTCGAGCAAAATTAAGTTCCTC 59.820 40.000 13.61 6.33 0.00 3.71
373 378 5.063880 ACACTCGAGCAAAATTAAGTTCCT 58.936 37.500 13.61 0.00 0.00 3.36
374 379 5.358298 ACACTCGAGCAAAATTAAGTTCC 57.642 39.130 13.61 0.00 0.00 3.62
375 380 6.357240 GTCAACACTCGAGCAAAATTAAGTTC 59.643 38.462 13.61 0.00 0.00 3.01
376 381 6.038271 AGTCAACACTCGAGCAAAATTAAGTT 59.962 34.615 13.61 1.15 0.00 2.66
377 382 5.527582 AGTCAACACTCGAGCAAAATTAAGT 59.472 36.000 13.61 0.00 0.00 2.24
378 383 5.848036 CAGTCAACACTCGAGCAAAATTAAG 59.152 40.000 13.61 0.00 0.00 1.85
379 384 5.295787 ACAGTCAACACTCGAGCAAAATTAA 59.704 36.000 13.61 0.00 0.00 1.40
380 385 4.814234 ACAGTCAACACTCGAGCAAAATTA 59.186 37.500 13.61 0.00 0.00 1.40
381 386 3.627577 ACAGTCAACACTCGAGCAAAATT 59.372 39.130 13.61 0.00 0.00 1.82
382 387 3.002656 CACAGTCAACACTCGAGCAAAAT 59.997 43.478 13.61 0.00 0.00 1.82
383 388 2.351418 CACAGTCAACACTCGAGCAAAA 59.649 45.455 13.61 0.00 0.00 2.44
384 389 1.933181 CACAGTCAACACTCGAGCAAA 59.067 47.619 13.61 0.00 0.00 3.68
385 390 1.570813 CACAGTCAACACTCGAGCAA 58.429 50.000 13.61 0.00 0.00 3.91
386 391 0.249447 CCACAGTCAACACTCGAGCA 60.249 55.000 13.61 0.00 0.00 4.26
387 392 0.249489 ACCACAGTCAACACTCGAGC 60.249 55.000 13.61 0.00 0.00 5.03
388 393 1.772182 GACCACAGTCAACACTCGAG 58.228 55.000 11.84 11.84 42.99 4.04
389 394 3.959478 GACCACAGTCAACACTCGA 57.041 52.632 0.00 0.00 42.99 4.04
398 403 3.142174 CCTCCTTTTTCTGACCACAGTC 58.858 50.000 0.00 0.00 43.81 3.51
399 404 2.158608 CCCTCCTTTTTCTGACCACAGT 60.159 50.000 0.00 0.00 43.81 3.55
400 405 2.106511 TCCCTCCTTTTTCTGACCACAG 59.893 50.000 0.00 0.00 44.66 3.66
401 406 2.131854 TCCCTCCTTTTTCTGACCACA 58.868 47.619 0.00 0.00 0.00 4.17
402 407 2.106684 AGTCCCTCCTTTTTCTGACCAC 59.893 50.000 0.00 0.00 0.00 4.16
403 408 2.418669 AGTCCCTCCTTTTTCTGACCA 58.581 47.619 0.00 0.00 0.00 4.02
404 409 3.326880 TGTAGTCCCTCCTTTTTCTGACC 59.673 47.826 0.00 0.00 0.00 4.02
405 410 4.618920 TGTAGTCCCTCCTTTTTCTGAC 57.381 45.455 0.00 0.00 0.00 3.51
406 411 4.658901 ACTTGTAGTCCCTCCTTTTTCTGA 59.341 41.667 0.00 0.00 0.00 3.27
407 412 4.974399 ACTTGTAGTCCCTCCTTTTTCTG 58.026 43.478 0.00 0.00 0.00 3.02
408 413 5.104067 ACAACTTGTAGTCCCTCCTTTTTCT 60.104 40.000 0.00 0.00 0.00 2.52
409 414 5.131067 ACAACTTGTAGTCCCTCCTTTTTC 58.869 41.667 0.00 0.00 0.00 2.29
410 415 5.125367 ACAACTTGTAGTCCCTCCTTTTT 57.875 39.130 0.00 0.00 0.00 1.94
411 416 4.790718 ACAACTTGTAGTCCCTCCTTTT 57.209 40.909 0.00 0.00 0.00 2.27
412 417 4.286291 CCTACAACTTGTAGTCCCTCCTTT 59.714 45.833 22.12 0.00 46.68 3.11
413 418 3.838903 CCTACAACTTGTAGTCCCTCCTT 59.161 47.826 22.12 0.00 46.68 3.36
414 419 3.181409 ACCTACAACTTGTAGTCCCTCCT 60.181 47.826 22.12 0.04 46.68 3.69
415 420 3.056035 CACCTACAACTTGTAGTCCCTCC 60.056 52.174 22.12 0.00 46.68 4.30
416 421 3.056035 CCACCTACAACTTGTAGTCCCTC 60.056 52.174 22.12 0.00 46.68 4.30
417 422 2.904434 CCACCTACAACTTGTAGTCCCT 59.096 50.000 22.12 4.71 46.68 4.20
418 423 2.901839 TCCACCTACAACTTGTAGTCCC 59.098 50.000 22.12 0.00 46.68 4.46
419 424 3.577415 ACTCCACCTACAACTTGTAGTCC 59.423 47.826 22.12 0.00 46.68 3.85
420 425 4.280174 TGACTCCACCTACAACTTGTAGTC 59.720 45.833 22.12 16.46 46.68 2.59
421 426 4.038883 GTGACTCCACCTACAACTTGTAGT 59.961 45.833 22.12 9.57 46.68 2.73
423 428 3.962063 TGTGACTCCACCTACAACTTGTA 59.038 43.478 1.67 1.67 42.53 2.41
424 429 2.769663 TGTGACTCCACCTACAACTTGT 59.230 45.455 0.00 0.00 42.53 3.16
425 430 3.469008 TGTGACTCCACCTACAACTTG 57.531 47.619 0.00 0.00 42.53 3.16
426 431 3.244561 CCATGTGACTCCACCTACAACTT 60.245 47.826 0.00 0.00 42.53 2.66
427 432 2.303022 CCATGTGACTCCACCTACAACT 59.697 50.000 0.00 0.00 42.53 3.16
428 433 2.301870 TCCATGTGACTCCACCTACAAC 59.698 50.000 0.00 0.00 42.53 3.32
429 434 2.567169 CTCCATGTGACTCCACCTACAA 59.433 50.000 0.00 0.00 42.53 2.41
430 435 2.179427 CTCCATGTGACTCCACCTACA 58.821 52.381 0.00 0.00 42.53 2.74
431 436 2.166664 GACTCCATGTGACTCCACCTAC 59.833 54.545 0.00 0.00 42.53 3.18
432 437 2.043115 AGACTCCATGTGACTCCACCTA 59.957 50.000 0.00 0.00 42.53 3.08
433 438 1.203237 AGACTCCATGTGACTCCACCT 60.203 52.381 0.00 0.00 42.53 4.00
434 439 1.270907 AGACTCCATGTGACTCCACC 58.729 55.000 0.00 0.00 42.53 4.61
435 440 3.070018 CAAAGACTCCATGTGACTCCAC 58.930 50.000 0.00 0.00 43.46 4.02
436 441 2.038952 CCAAAGACTCCATGTGACTCCA 59.961 50.000 0.00 0.00 0.00 3.86
437 442 2.303022 TCCAAAGACTCCATGTGACTCC 59.697 50.000 0.00 0.00 0.00 3.85
438 443 3.007398 ACTCCAAAGACTCCATGTGACTC 59.993 47.826 0.00 0.00 0.00 3.36
439 444 2.975489 ACTCCAAAGACTCCATGTGACT 59.025 45.455 0.00 0.00 0.00 3.41
440 445 3.409026 ACTCCAAAGACTCCATGTGAC 57.591 47.619 0.00 0.00 0.00 3.67
441 446 4.160329 ACTACTCCAAAGACTCCATGTGA 58.840 43.478 0.00 0.00 0.00 3.58
442 447 4.543590 ACTACTCCAAAGACTCCATGTG 57.456 45.455 0.00 0.00 0.00 3.21
443 448 4.160626 GCTACTACTCCAAAGACTCCATGT 59.839 45.833 0.00 0.00 0.00 3.21
444 449 4.688021 GCTACTACTCCAAAGACTCCATG 58.312 47.826 0.00 0.00 0.00 3.66
445 450 3.381908 CGCTACTACTCCAAAGACTCCAT 59.618 47.826 0.00 0.00 0.00 3.41
446 451 2.753452 CGCTACTACTCCAAAGACTCCA 59.247 50.000 0.00 0.00 0.00 3.86
447 452 2.099427 CCGCTACTACTCCAAAGACTCC 59.901 54.545 0.00 0.00 0.00 3.85
448 453 2.754002 ACCGCTACTACTCCAAAGACTC 59.246 50.000 0.00 0.00 0.00 3.36
449 454 2.805194 ACCGCTACTACTCCAAAGACT 58.195 47.619 0.00 0.00 0.00 3.24
450 455 3.693578 AGTACCGCTACTACTCCAAAGAC 59.306 47.826 0.00 0.00 30.81 3.01
451 456 3.944015 GAGTACCGCTACTACTCCAAAGA 59.056 47.826 0.00 0.00 35.85 2.52
452 457 3.693085 TGAGTACCGCTACTACTCCAAAG 59.307 47.826 8.86 0.00 39.57 2.77
453 458 3.689347 TGAGTACCGCTACTACTCCAAA 58.311 45.455 8.86 0.00 39.57 3.28
454 459 3.276857 CTGAGTACCGCTACTACTCCAA 58.723 50.000 8.86 0.00 39.57 3.53
455 460 2.421107 CCTGAGTACCGCTACTACTCCA 60.421 54.545 8.86 0.00 39.57 3.86
456 461 2.220313 CCTGAGTACCGCTACTACTCC 58.780 57.143 8.86 0.00 39.57 3.85
457 462 2.220313 CCCTGAGTACCGCTACTACTC 58.780 57.143 0.00 5.71 40.38 2.59
458 463 1.133853 CCCCTGAGTACCGCTACTACT 60.134 57.143 0.00 0.00 32.96 2.57
459 464 1.133976 TCCCCTGAGTACCGCTACTAC 60.134 57.143 0.00 0.00 32.96 2.73
460 465 1.216064 TCCCCTGAGTACCGCTACTA 58.784 55.000 0.00 0.00 32.96 1.82
461 466 0.556747 ATCCCCTGAGTACCGCTACT 59.443 55.000 0.00 0.00 35.77 2.57
462 467 2.283145 TATCCCCTGAGTACCGCTAC 57.717 55.000 0.00 0.00 0.00 3.58
463 468 2.872732 CTTATCCCCTGAGTACCGCTA 58.127 52.381 0.00 0.00 0.00 4.26
464 469 1.705873 CTTATCCCCTGAGTACCGCT 58.294 55.000 0.00 0.00 0.00 5.52
465 470 0.033642 GCTTATCCCCTGAGTACCGC 59.966 60.000 0.00 0.00 0.00 5.68
466 471 1.705873 AGCTTATCCCCTGAGTACCG 58.294 55.000 0.00 0.00 0.00 4.02
467 472 4.654724 ACTTAAGCTTATCCCCTGAGTACC 59.345 45.833 7.08 0.00 0.00 3.34
468 473 5.221481 GGACTTAAGCTTATCCCCTGAGTAC 60.221 48.000 13.23 6.74 0.00 2.73
469 474 4.900054 GGACTTAAGCTTATCCCCTGAGTA 59.100 45.833 13.23 0.00 0.00 2.59
470 475 3.712218 GGACTTAAGCTTATCCCCTGAGT 59.288 47.826 13.23 9.12 0.00 3.41
471 476 3.711704 TGGACTTAAGCTTATCCCCTGAG 59.288 47.826 19.12 9.77 0.00 3.35
472 477 3.731431 TGGACTTAAGCTTATCCCCTGA 58.269 45.455 19.12 2.73 0.00 3.86
473 478 4.503714 TTGGACTTAAGCTTATCCCCTG 57.496 45.455 19.12 5.15 0.00 4.45
474 479 4.478686 ACATTGGACTTAAGCTTATCCCCT 59.521 41.667 19.12 7.40 0.00 4.79
475 480 4.793201 ACATTGGACTTAAGCTTATCCCC 58.207 43.478 19.12 14.48 0.00 4.81
476 481 6.354130 TGTACATTGGACTTAAGCTTATCCC 58.646 40.000 19.12 14.77 0.00 3.85
477 482 7.715249 TCATGTACATTGGACTTAAGCTTATCC 59.285 37.037 16.27 16.27 0.00 2.59
478 483 8.662781 TCATGTACATTGGACTTAAGCTTATC 57.337 34.615 5.37 2.66 0.00 1.75
479 484 9.461312 TTTCATGTACATTGGACTTAAGCTTAT 57.539 29.630 5.37 0.00 0.00 1.73
480 485 8.856153 TTTCATGTACATTGGACTTAAGCTTA 57.144 30.769 5.37 0.86 0.00 3.09
481 486 7.448469 ACTTTCATGTACATTGGACTTAAGCTT 59.552 33.333 5.37 3.48 0.00 3.74
482 487 6.942576 ACTTTCATGTACATTGGACTTAAGCT 59.057 34.615 5.37 0.00 0.00 3.74
483 488 7.145932 ACTTTCATGTACATTGGACTTAAGC 57.854 36.000 5.37 0.00 0.00 3.09
484 489 9.398170 CAAACTTTCATGTACATTGGACTTAAG 57.602 33.333 5.37 0.00 0.00 1.85
485 490 9.126151 TCAAACTTTCATGTACATTGGACTTAA 57.874 29.630 5.37 0.00 0.00 1.85
486 491 8.564574 GTCAAACTTTCATGTACATTGGACTTA 58.435 33.333 5.37 0.00 0.00 2.24
487 492 7.425606 GTCAAACTTTCATGTACATTGGACTT 58.574 34.615 5.37 0.00 0.00 3.01
488 493 6.293407 CGTCAAACTTTCATGTACATTGGACT 60.293 38.462 5.37 0.00 0.00 3.85
489 494 5.851177 CGTCAAACTTTCATGTACATTGGAC 59.149 40.000 5.37 3.97 0.00 4.02
490 495 5.561919 GCGTCAAACTTTCATGTACATTGGA 60.562 40.000 5.37 0.00 0.00 3.53
491 496 4.616802 GCGTCAAACTTTCATGTACATTGG 59.383 41.667 5.37 0.00 0.00 3.16
492 497 5.211454 TGCGTCAAACTTTCATGTACATTG 58.789 37.500 5.37 1.01 0.00 2.82
493 498 5.431420 TGCGTCAAACTTTCATGTACATT 57.569 34.783 5.37 0.00 0.00 2.71
494 499 5.627499 ATGCGTCAAACTTTCATGTACAT 57.373 34.783 1.41 1.41 0.00 2.29
495 500 5.008118 TCAATGCGTCAAACTTTCATGTACA 59.992 36.000 0.00 0.00 0.00 2.90
496 501 5.339611 GTCAATGCGTCAAACTTTCATGTAC 59.660 40.000 0.00 0.00 0.00 2.90
497 502 5.448438 GTCAATGCGTCAAACTTTCATGTA 58.552 37.500 0.00 0.00 0.00 2.29
498 503 4.290155 GTCAATGCGTCAAACTTTCATGT 58.710 39.130 0.00 0.00 0.00 3.21
499 504 3.358700 CGTCAATGCGTCAAACTTTCATG 59.641 43.478 0.00 0.00 0.00 3.07
500 505 3.249799 TCGTCAATGCGTCAAACTTTCAT 59.750 39.130 0.00 0.00 0.00 2.57
501 506 2.609916 TCGTCAATGCGTCAAACTTTCA 59.390 40.909 0.00 0.00 0.00 2.69
502 507 3.247563 TCGTCAATGCGTCAAACTTTC 57.752 42.857 0.00 0.00 0.00 2.62
503 508 3.684103 TTCGTCAATGCGTCAAACTTT 57.316 38.095 0.00 0.00 0.00 2.66
504 509 3.364964 GGATTCGTCAATGCGTCAAACTT 60.365 43.478 0.00 0.00 0.00 2.66
505 510 2.159627 GGATTCGTCAATGCGTCAAACT 59.840 45.455 0.00 0.00 0.00 2.66
506 511 2.095969 TGGATTCGTCAATGCGTCAAAC 60.096 45.455 0.00 0.00 33.06 2.93
507 512 2.147150 TGGATTCGTCAATGCGTCAAA 58.853 42.857 0.00 0.00 33.06 2.69
508 513 1.802069 TGGATTCGTCAATGCGTCAA 58.198 45.000 0.00 0.00 33.06 3.18
509 514 2.022764 ATGGATTCGTCAATGCGTCA 57.977 45.000 0.00 0.00 33.06 4.35
510 515 4.457810 CATTATGGATTCGTCAATGCGTC 58.542 43.478 0.00 0.00 33.06 5.19
511 516 3.250762 CCATTATGGATTCGTCAATGCGT 59.749 43.478 5.05 0.00 40.96 5.24
512 517 3.250762 ACCATTATGGATTCGTCAATGCG 59.749 43.478 19.23 0.00 40.96 4.73
513 518 4.539870 CACCATTATGGATTCGTCAATGC 58.460 43.478 19.23 0.00 40.96 3.56
514 519 4.821260 TCCACCATTATGGATTCGTCAATG 59.179 41.667 19.23 2.05 44.14 2.82
515 520 5.047566 TCCACCATTATGGATTCGTCAAT 57.952 39.130 19.23 0.00 44.14 2.57
516 521 4.495690 TCCACCATTATGGATTCGTCAA 57.504 40.909 19.23 0.00 44.14 3.18
524 529 6.274436 TGGCTAATATTCTCCACCATTATGGA 59.726 38.462 19.23 0.73 46.92 3.41
525 530 6.484288 TGGCTAATATTCTCCACCATTATGG 58.516 40.000 10.08 10.08 45.02 2.74
526 531 7.121759 CCTTGGCTAATATTCTCCACCATTATG 59.878 40.741 7.81 0.00 0.00 1.90
527 532 7.177878 CCTTGGCTAATATTCTCCACCATTAT 58.822 38.462 7.81 0.00 0.00 1.28
528 533 6.102615 ACCTTGGCTAATATTCTCCACCATTA 59.897 38.462 7.81 0.00 0.00 1.90
529 534 5.103515 ACCTTGGCTAATATTCTCCACCATT 60.104 40.000 7.81 0.00 0.00 3.16
530 535 4.416848 ACCTTGGCTAATATTCTCCACCAT 59.583 41.667 7.81 0.00 0.00 3.55
531 536 3.785887 ACCTTGGCTAATATTCTCCACCA 59.214 43.478 7.81 0.78 0.00 4.17
532 537 4.137543 CACCTTGGCTAATATTCTCCACC 58.862 47.826 7.81 0.00 0.00 4.61
533 538 4.137543 CCACCTTGGCTAATATTCTCCAC 58.862 47.826 7.81 0.00 0.00 4.02
534 539 3.138283 CCCACCTTGGCTAATATTCTCCA 59.862 47.826 4.89 4.89 35.79 3.86
535 540 3.498661 CCCCACCTTGGCTAATATTCTCC 60.499 52.174 0.00 0.00 35.79 3.71
536 541 3.138468 ACCCCACCTTGGCTAATATTCTC 59.862 47.826 0.00 0.00 35.79 2.87
537 542 3.131252 ACCCCACCTTGGCTAATATTCT 58.869 45.455 0.00 0.00 35.79 2.40
538 543 3.595190 ACCCCACCTTGGCTAATATTC 57.405 47.619 0.00 0.00 35.79 1.75
539 544 4.030216 CAAACCCCACCTTGGCTAATATT 58.970 43.478 0.00 0.00 35.79 1.28
540 545 3.012388 ACAAACCCCACCTTGGCTAATAT 59.988 43.478 0.00 0.00 35.79 1.28
541 546 2.380590 ACAAACCCCACCTTGGCTAATA 59.619 45.455 0.00 0.00 35.79 0.98
542 547 1.149077 ACAAACCCCACCTTGGCTAAT 59.851 47.619 0.00 0.00 35.79 1.73
543 548 0.558712 ACAAACCCCACCTTGGCTAA 59.441 50.000 0.00 0.00 35.79 3.09
544 549 0.558712 AACAAACCCCACCTTGGCTA 59.441 50.000 0.00 0.00 35.79 3.93
545 550 1.048160 CAACAAACCCCACCTTGGCT 61.048 55.000 0.00 0.00 35.79 4.75
546 551 1.445518 CAACAAACCCCACCTTGGC 59.554 57.895 0.00 0.00 35.79 4.52
547 552 0.397816 TCCAACAAACCCCACCTTGG 60.398 55.000 0.00 0.00 37.25 3.61
548 553 1.039856 CTCCAACAAACCCCACCTTG 58.960 55.000 0.00 0.00 0.00 3.61
549 554 0.634465 ACTCCAACAAACCCCACCTT 59.366 50.000 0.00 0.00 0.00 3.50
550 555 0.634465 AACTCCAACAAACCCCACCT 59.366 50.000 0.00 0.00 0.00 4.00
551 556 0.750249 CAACTCCAACAAACCCCACC 59.250 55.000 0.00 0.00 0.00 4.61
552 557 1.136110 CACAACTCCAACAAACCCCAC 59.864 52.381 0.00 0.00 0.00 4.61
553 558 1.272760 ACACAACTCCAACAAACCCCA 60.273 47.619 0.00 0.00 0.00 4.96
554 559 1.407618 GACACAACTCCAACAAACCCC 59.592 52.381 0.00 0.00 0.00 4.95
555 560 1.064952 CGACACAACTCCAACAAACCC 59.935 52.381 0.00 0.00 0.00 4.11
556 561 2.011222 TCGACACAACTCCAACAAACC 58.989 47.619 0.00 0.00 0.00 3.27
557 562 3.750639 TTCGACACAACTCCAACAAAC 57.249 42.857 0.00 0.00 0.00 2.93
558 563 6.932400 ACTATATTCGACACAACTCCAACAAA 59.068 34.615 0.00 0.00 0.00 2.83
559 564 6.367695 CACTATATTCGACACAACTCCAACAA 59.632 38.462 0.00 0.00 0.00 2.83
560 565 5.867174 CACTATATTCGACACAACTCCAACA 59.133 40.000 0.00 0.00 0.00 3.33
561 566 5.867716 ACACTATATTCGACACAACTCCAAC 59.132 40.000 0.00 0.00 0.00 3.77
562 567 6.032956 ACACTATATTCGACACAACTCCAA 57.967 37.500 0.00 0.00 0.00 3.53
563 568 5.654603 ACACTATATTCGACACAACTCCA 57.345 39.130 0.00 0.00 0.00 3.86
564 569 5.680229 CGTACACTATATTCGACACAACTCC 59.320 44.000 0.00 0.00 0.00 3.85
565 570 6.481134 TCGTACACTATATTCGACACAACTC 58.519 40.000 0.00 0.00 0.00 3.01
566 571 6.426980 TCGTACACTATATTCGACACAACT 57.573 37.500 0.00 0.00 0.00 3.16
567 572 5.680229 CCTCGTACACTATATTCGACACAAC 59.320 44.000 0.00 0.00 0.00 3.32
568 573 5.355071 ACCTCGTACACTATATTCGACACAA 59.645 40.000 0.00 0.00 0.00 3.33
569 574 4.877823 ACCTCGTACACTATATTCGACACA 59.122 41.667 0.00 0.00 0.00 3.72
570 575 5.415415 ACCTCGTACACTATATTCGACAC 57.585 43.478 0.00 0.00 0.00 3.67
571 576 5.698089 CCTACCTCGTACACTATATTCGACA 59.302 44.000 0.00 0.00 0.00 4.35
572 577 5.698545 ACCTACCTCGTACACTATATTCGAC 59.301 44.000 0.00 0.00 0.00 4.20
573 578 5.858381 ACCTACCTCGTACACTATATTCGA 58.142 41.667 0.00 0.00 0.00 3.71
574 579 6.551385 AACCTACCTCGTACACTATATTCG 57.449 41.667 0.00 0.00 0.00 3.34
575 580 8.383318 TGTAACCTACCTCGTACACTATATTC 57.617 38.462 0.00 0.00 0.00 1.75
576 581 8.752005 TTGTAACCTACCTCGTACACTATATT 57.248 34.615 0.00 0.00 0.00 1.28
577 582 8.930846 ATTGTAACCTACCTCGTACACTATAT 57.069 34.615 0.00 0.00 0.00 0.86
578 583 8.623903 CAATTGTAACCTACCTCGTACACTATA 58.376 37.037 0.00 0.00 0.00 1.31
579 584 7.417116 CCAATTGTAACCTACCTCGTACACTAT 60.417 40.741 4.43 0.00 0.00 2.12
580 585 6.127647 CCAATTGTAACCTACCTCGTACACTA 60.128 42.308 4.43 0.00 0.00 2.74
581 586 5.337009 CCAATTGTAACCTACCTCGTACACT 60.337 44.000 4.43 0.00 0.00 3.55
582 587 4.866486 CCAATTGTAACCTACCTCGTACAC 59.134 45.833 4.43 0.00 0.00 2.90
583 588 4.771577 TCCAATTGTAACCTACCTCGTACA 59.228 41.667 4.43 0.00 0.00 2.90
584 589 5.105063 GTCCAATTGTAACCTACCTCGTAC 58.895 45.833 4.43 0.00 0.00 3.67
585 590 5.018809 AGTCCAATTGTAACCTACCTCGTA 58.981 41.667 4.43 0.00 0.00 3.43
586 591 3.836562 AGTCCAATTGTAACCTACCTCGT 59.163 43.478 4.43 0.00 0.00 4.18
587 592 4.467198 AGTCCAATTGTAACCTACCTCG 57.533 45.455 4.43 0.00 0.00 4.63
588 593 5.557866 ACAAGTCCAATTGTAACCTACCTC 58.442 41.667 4.43 0.00 41.53 3.85
589 594 5.578157 ACAAGTCCAATTGTAACCTACCT 57.422 39.130 4.43 0.00 41.53 3.08
590 595 6.470278 ACTACAAGTCCAATTGTAACCTACC 58.530 40.000 4.43 0.00 43.22 3.18
591 596 7.443272 ACAACTACAAGTCCAATTGTAACCTAC 59.557 37.037 4.43 0.00 43.22 3.18
592 597 7.511268 ACAACTACAAGTCCAATTGTAACCTA 58.489 34.615 4.43 0.00 43.22 3.08
593 598 6.362248 ACAACTACAAGTCCAATTGTAACCT 58.638 36.000 4.43 0.00 43.22 3.50
594 599 6.628919 ACAACTACAAGTCCAATTGTAACC 57.371 37.500 4.43 0.00 43.22 2.85
595 600 8.166706 CGATACAACTACAAGTCCAATTGTAAC 58.833 37.037 4.43 2.48 43.22 2.50
596 601 7.874016 ACGATACAACTACAAGTCCAATTGTAA 59.126 33.333 4.43 0.00 43.22 2.41
597 602 7.329962 CACGATACAACTACAAGTCCAATTGTA 59.670 37.037 4.43 0.15 43.10 2.41
598 603 6.147164 CACGATACAACTACAAGTCCAATTGT 59.853 38.462 4.43 0.00 45.19 2.71
599 604 6.147164 ACACGATACAACTACAAGTCCAATTG 59.853 38.462 0.00 0.00 36.22 2.32
600 605 6.228258 ACACGATACAACTACAAGTCCAATT 58.772 36.000 0.00 0.00 0.00 2.32
601 606 5.790593 ACACGATACAACTACAAGTCCAAT 58.209 37.500 0.00 0.00 0.00 3.16
602 607 5.204409 ACACGATACAACTACAAGTCCAA 57.796 39.130 0.00 0.00 0.00 3.53
603 608 4.859304 ACACGATACAACTACAAGTCCA 57.141 40.909 0.00 0.00 0.00 4.02
604 609 5.164119 CGAAACACGATACAACTACAAGTCC 60.164 44.000 0.00 0.00 45.77 3.85
605 610 5.626543 TCGAAACACGATACAACTACAAGTC 59.373 40.000 0.00 0.00 46.45 3.01
606 611 5.522456 TCGAAACACGATACAACTACAAGT 58.478 37.500 0.00 0.00 46.45 3.16
620 625 4.091365 TGCAATTCACTCTATCGAAACACG 59.909 41.667 0.00 0.00 44.09 4.49
621 626 5.530519 TGCAATTCACTCTATCGAAACAC 57.469 39.130 0.00 0.00 0.00 3.32
622 627 5.931724 TCTTGCAATTCACTCTATCGAAACA 59.068 36.000 0.00 0.00 0.00 2.83
623 628 6.408858 TCTTGCAATTCACTCTATCGAAAC 57.591 37.500 0.00 0.00 0.00 2.78
624 629 7.298122 GTTTCTTGCAATTCACTCTATCGAAA 58.702 34.615 0.00 0.00 0.00 3.46
625 630 6.128282 GGTTTCTTGCAATTCACTCTATCGAA 60.128 38.462 0.00 0.00 0.00 3.71
626 631 5.351465 GGTTTCTTGCAATTCACTCTATCGA 59.649 40.000 0.00 0.00 0.00 3.59
627 632 5.122239 TGGTTTCTTGCAATTCACTCTATCG 59.878 40.000 0.00 0.00 0.00 2.92
628 633 6.317857 GTGGTTTCTTGCAATTCACTCTATC 58.682 40.000 0.00 0.00 0.00 2.08
629 634 5.183904 GGTGGTTTCTTGCAATTCACTCTAT 59.816 40.000 0.00 0.00 0.00 1.98
630 635 4.518970 GGTGGTTTCTTGCAATTCACTCTA 59.481 41.667 0.00 0.00 0.00 2.43
896 901 2.096657 CGTGAGAGCAGAGAAATCGAGA 59.903 50.000 0.00 0.00 0.00 4.04
921 926 2.355310 CGAGTGTGGGAGTAGAGAGAGT 60.355 54.545 0.00 0.00 0.00 3.24
930 935 4.057428 GCGAGCGAGTGTGGGAGT 62.057 66.667 0.00 0.00 0.00 3.85
1068 1073 2.191128 ATGTTCTGACCTTGACAGGC 57.809 50.000 0.00 0.00 45.56 4.85
1119 1124 4.278170 TCAAATCGAGCAAATGTTCAACCT 59.722 37.500 0.00 0.00 0.00 3.50
1146 1151 6.239289 GGGATCTGAGAAATCCAACAAAAACA 60.239 38.462 4.62 0.00 43.85 2.83
1279 1284 3.181434 ACAAGCAATGAACCTCCTACCAA 60.181 43.478 0.00 0.00 0.00 3.67
1313 1318 7.985634 ATGCTACAAACACAACTTAAAACTG 57.014 32.000 0.00 0.00 0.00 3.16
1348 1353 7.237055 AGGAACAGTTACTACAAACCCTAGAAT 59.763 37.037 0.00 0.00 0.00 2.40
1399 1404 7.563924 AGCAGTAACTATGAACCCTAGAACATA 59.436 37.037 0.00 0.00 0.00 2.29
1644 1707 1.839354 TGTAGATGCTCTGGCCAATGA 59.161 47.619 7.01 0.00 37.74 2.57
1773 1837 4.026052 TCTCATATGTCTCCTGCAACTCA 58.974 43.478 1.90 0.00 0.00 3.41
1836 1900 1.144913 TGGTTTACCTCAAGCTGGCTT 59.855 47.619 1.60 1.60 36.82 4.35
1844 1908 5.415701 GCATCATTCTTCTGGTTTACCTCAA 59.584 40.000 0.00 0.00 36.82 3.02
1937 2003 3.988379 TTTGCTTTAACTGGTCAGCAG 57.012 42.857 1.16 1.16 43.02 4.24
1940 2006 6.449698 ACATGAATTTGCTTTAACTGGTCAG 58.550 36.000 0.00 0.00 0.00 3.51
2030 2096 6.545298 GCAAATCTCCAAAGTCCTCTTATCAT 59.455 38.462 0.00 0.00 33.09 2.45
2079 2145 4.081972 TCCTTCTCTTTCTTCAGGTCATCG 60.082 45.833 0.00 0.00 0.00 3.84
2118 2184 3.688185 TCACTTTCATCAGCTCAGCAATC 59.312 43.478 0.00 0.00 0.00 2.67
2287 2353 9.764363 CCATAGCTACTACAAAAGACATCATTA 57.236 33.333 0.00 0.00 0.00 1.90
2387 2453 7.715265 AACATAGTACTCTCACAAACAACAG 57.285 36.000 0.00 0.00 0.00 3.16
2670 2741 8.100791 TGTTAGTTTGCCAGTTCTATCTATGTT 58.899 33.333 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.