Multiple sequence alignment - TraesCS3A01G526500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G526500 chr3A 100.000 3847 0 0 1 3847 740080125 740076279 0.000000e+00 7105.0
1 TraesCS3A01G526500 chr3A 91.819 1039 74 6 1054 2088 739991574 739990543 0.000000e+00 1437.0
2 TraesCS3A01G526500 chr3A 90.149 1076 90 13 960 2024 744195572 744194502 0.000000e+00 1386.0
3 TraesCS3A01G526500 chr3A 90.084 1069 92 11 960 2018 744085813 744084749 0.000000e+00 1375.0
4 TraesCS3A01G526500 chr3A 89.870 1076 94 12 960 2024 744216638 744215567 0.000000e+00 1369.0
5 TraesCS3A01G526500 chr3A 89.212 241 26 0 3585 3825 649017917 649017677 6.250000e-78 302.0
6 TraesCS3A01G526500 chr3D 92.000 2325 135 20 847 3124 607667696 607665376 0.000000e+00 3216.0
7 TraesCS3A01G526500 chr3D 89.736 1062 97 11 960 2015 610166085 610167140 0.000000e+00 1347.0
8 TraesCS3A01G526500 chr3D 90.669 643 34 17 3198 3828 607665321 607664693 0.000000e+00 832.0
9 TraesCS3A01G526500 chr3D 87.629 194 13 6 149 338 24167956 24168142 8.370000e-52 215.0
10 TraesCS3A01G526500 chr3B 94.595 1258 55 7 839 2083 817353838 817352581 0.000000e+00 1934.0
11 TraesCS3A01G526500 chr3B 90.344 1046 92 8 982 2026 821978319 821979356 0.000000e+00 1363.0
12 TraesCS3A01G526500 chr3B 91.104 978 80 3 1054 2024 821858263 821857286 0.000000e+00 1317.0
13 TraesCS3A01G526500 chr3B 85.253 990 66 31 2250 3195 817352299 817351346 0.000000e+00 946.0
14 TraesCS3A01G526500 chr3B 89.406 623 40 13 3218 3828 817350429 817349821 0.000000e+00 761.0
15 TraesCS3A01G526500 chr3B 88.083 193 13 5 149 338 201523156 201523341 1.800000e-53 220.0
16 TraesCS3A01G526500 chr3B 88.649 185 11 5 3218 3394 817351281 817351099 2.330000e-52 217.0
17 TraesCS3A01G526500 chr1B 90.644 962 90 0 1057 2018 622181020 622180059 0.000000e+00 1279.0
18 TraesCS3A01G526500 chr1A 90.363 965 87 3 1051 2015 547275654 547276612 0.000000e+00 1262.0
19 TraesCS3A01G526500 chr1A 95.122 205 7 3 377 579 137854576 137854373 1.720000e-83 320.0
20 TraesCS3A01G526500 chr1A 97.340 188 5 0 386 573 390635956 390635769 1.720000e-83 320.0
21 TraesCS3A01G526500 chr1A 90.506 158 15 0 2552 2709 547277233 547277390 3.890000e-50 209.0
22 TraesCS3A01G526500 chr7D 88.384 396 38 6 3407 3799 481831969 481831579 1.620000e-128 470.0
23 TraesCS3A01G526500 chr2A 98.020 202 4 0 378 579 278996249 278996450 6.110000e-93 351.0
24 TraesCS3A01G526500 chr4A 98.925 186 2 0 386 571 519575674 519575489 2.210000e-87 333.0
25 TraesCS3A01G526500 chr7B 85.577 312 37 6 3492 3801 507230886 507230581 1.720000e-83 320.0
26 TraesCS3A01G526500 chr7B 85.514 214 17 8 149 358 559141467 559141670 1.080000e-50 211.0
27 TraesCS3A01G526500 chr7B 100.000 82 0 0 1 82 54069696 54069777 6.660000e-33 152.0
28 TraesCS3A01G526500 chr6A 97.354 189 4 1 381 569 273584244 273584431 1.720000e-83 320.0
29 TraesCS3A01G526500 chr6A 96.825 189 6 0 384 572 21147641 21147829 2.230000e-82 316.0
30 TraesCS3A01G526500 chr1D 94.581 203 11 0 376 578 314506181 314506383 8.020000e-82 315.0
31 TraesCS3A01G526500 chr1D 89.595 173 16 2 1112 1283 25957638 25957467 6.470000e-53 219.0
32 TraesCS3A01G526500 chr1D 90.798 163 15 0 2552 2714 452348400 452348562 6.470000e-53 219.0
33 TraesCS3A01G526500 chr1D 87.565 193 14 5 149 338 254522215 254522400 8.370000e-52 215.0
34 TraesCS3A01G526500 chr7A 95.050 202 5 5 380 579 162776111 162776309 2.890000e-81 313.0
35 TraesCS3A01G526500 chr7A 92.558 215 14 2 363 577 690534282 690534494 1.340000e-79 307.0
36 TraesCS3A01G526500 chr7A 87.821 156 19 0 2555 2710 721585866 721585711 2.360000e-42 183.0
37 TraesCS3A01G526500 chr7A 87.821 156 19 0 2555 2710 721660520 721660365 2.360000e-42 183.0
38 TraesCS3A01G526500 chrUn 87.192 203 14 6 149 348 93413487 93413294 1.800000e-53 220.0
39 TraesCS3A01G526500 chrUn 87.255 204 13 7 149 348 93415856 93415662 1.800000e-53 220.0
40 TraesCS3A01G526500 chrUn 100.000 82 0 0 1 82 77300840 77300759 6.660000e-33 152.0
41 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 86514323 86514242 3.100000e-31 147.0
42 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 170988474 170988393 3.100000e-31 147.0
43 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 171050244 171050325 3.100000e-31 147.0
44 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 189398999 189399080 3.100000e-31 147.0
45 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 264057980 264057899 3.100000e-31 147.0
46 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 266527913 266527832 3.100000e-31 147.0
47 TraesCS3A01G526500 chrUn 98.780 82 1 0 1 82 365914808 365914889 3.100000e-31 147.0
48 TraesCS3A01G526500 chrUn 97.872 47 1 0 1237 1283 154747522 154747568 8.860000e-12 82.4
49 TraesCS3A01G526500 chr5D 88.083 193 13 5 149 338 560880958 560881143 1.800000e-53 220.0
50 TraesCS3A01G526500 chr5D 87.565 193 14 5 149 338 503214364 503214549 8.370000e-52 215.0
51 TraesCS3A01G526500 chr2D 87.192 203 14 6 149 348 635586408 635586215 1.800000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G526500 chr3A 740076279 740080125 3846 True 7105.0 7105 100.00000 1 3847 1 chr3A.!!$R3 3846
1 TraesCS3A01G526500 chr3A 739990543 739991574 1031 True 1437.0 1437 91.81900 1054 2088 1 chr3A.!!$R2 1034
2 TraesCS3A01G526500 chr3A 744194502 744195572 1070 True 1386.0 1386 90.14900 960 2024 1 chr3A.!!$R5 1064
3 TraesCS3A01G526500 chr3A 744084749 744085813 1064 True 1375.0 1375 90.08400 960 2018 1 chr3A.!!$R4 1058
4 TraesCS3A01G526500 chr3A 744215567 744216638 1071 True 1369.0 1369 89.87000 960 2024 1 chr3A.!!$R6 1064
5 TraesCS3A01G526500 chr3D 607664693 607667696 3003 True 2024.0 3216 91.33450 847 3828 2 chr3D.!!$R1 2981
6 TraesCS3A01G526500 chr3D 610166085 610167140 1055 False 1347.0 1347 89.73600 960 2015 1 chr3D.!!$F2 1055
7 TraesCS3A01G526500 chr3B 821978319 821979356 1037 False 1363.0 1363 90.34400 982 2026 1 chr3B.!!$F2 1044
8 TraesCS3A01G526500 chr3B 821857286 821858263 977 True 1317.0 1317 91.10400 1054 2024 1 chr3B.!!$R1 970
9 TraesCS3A01G526500 chr3B 817349821 817353838 4017 True 964.5 1934 89.47575 839 3828 4 chr3B.!!$R2 2989
10 TraesCS3A01G526500 chr1B 622180059 622181020 961 True 1279.0 1279 90.64400 1057 2018 1 chr1B.!!$R1 961
11 TraesCS3A01G526500 chr1A 547275654 547277390 1736 False 735.5 1262 90.43450 1051 2709 2 chr1A.!!$F1 1658
12 TraesCS3A01G526500 chrUn 93413294 93415856 2562 True 220.0 220 87.22350 149 348 2 chrUn.!!$R6 199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.033601 TGTTTCACAGGTTGGGTGCT 60.034 50.000 0.00 0.00 36.22 4.40 F
815 818 0.038890 TTCGGCCCATTCATGGTGAA 59.961 50.000 0.00 3.75 46.65 3.18 F
869 872 0.107508 ATGGGATCAAGTCACGCCTG 60.108 55.000 0.00 0.00 30.69 4.85 F
1820 2616 1.443407 CTCGCCGGGATTCTCATGT 59.557 57.895 2.18 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 2613 1.511305 CTGGTACGCCGAGTCACAT 59.489 57.895 0.00 0.00 37.67 3.21 R
2619 3928 0.242825 TGTTGAACGCCGTCTCTAGG 59.757 55.000 0.00 0.00 0.00 3.02 R
2725 4372 2.032860 GCTCCTAGCATGCCGGAGAA 62.033 60.000 38.18 16.59 45.67 2.87 R
3068 4728 0.035317 AACAGCGCTGATGTCTTCCA 59.965 50.000 42.03 0.00 27.93 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.526211 GAACAGTTCGGGCCAAATCC 59.474 55.000 4.39 0.00 0.00 3.01
25 26 0.112412 AACAGTTCGGGCCAAATCCT 59.888 50.000 4.39 0.00 0.00 3.24
26 27 0.609131 ACAGTTCGGGCCAAATCCTG 60.609 55.000 4.39 6.09 0.00 3.86
27 28 0.322456 CAGTTCGGGCCAAATCCTGA 60.322 55.000 4.39 0.00 39.65 3.86
28 29 0.404040 AGTTCGGGCCAAATCCTGAA 59.596 50.000 4.39 0.23 46.32 3.02
29 30 3.264574 TTCGGGCCAAATCCTGAAG 57.735 52.632 4.39 0.00 44.32 3.02
30 31 0.695924 TTCGGGCCAAATCCTGAAGA 59.304 50.000 4.39 0.00 44.32 2.87
31 32 0.695924 TCGGGCCAAATCCTGAAGAA 59.304 50.000 4.39 0.00 38.51 2.52
32 33 1.074727 TCGGGCCAAATCCTGAAGAAA 59.925 47.619 4.39 0.00 38.51 2.52
33 34 1.474077 CGGGCCAAATCCTGAAGAAAG 59.526 52.381 4.39 0.00 34.34 2.62
34 35 1.205655 GGGCCAAATCCTGAAGAAAGC 59.794 52.381 4.39 0.00 0.00 3.51
35 36 2.174360 GGCCAAATCCTGAAGAAAGCT 58.826 47.619 0.00 0.00 0.00 3.74
36 37 2.165234 GGCCAAATCCTGAAGAAAGCTC 59.835 50.000 0.00 0.00 0.00 4.09
37 38 2.821969 GCCAAATCCTGAAGAAAGCTCA 59.178 45.455 0.00 0.00 0.00 4.26
38 39 3.256631 GCCAAATCCTGAAGAAAGCTCAA 59.743 43.478 0.00 0.00 0.00 3.02
39 40 4.262164 GCCAAATCCTGAAGAAAGCTCAAA 60.262 41.667 0.00 0.00 0.00 2.69
40 41 5.739935 GCCAAATCCTGAAGAAAGCTCAAAA 60.740 40.000 0.00 0.00 0.00 2.44
41 42 5.924825 CCAAATCCTGAAGAAAGCTCAAAAG 59.075 40.000 0.00 0.00 0.00 2.27
53 54 3.758521 GCTCAAAAGCGTTGTTTGATG 57.241 42.857 9.64 6.68 42.49 3.07
54 55 3.371168 GCTCAAAAGCGTTGTTTGATGA 58.629 40.909 9.64 0.00 42.49 2.92
55 56 3.423206 GCTCAAAAGCGTTGTTTGATGAG 59.577 43.478 9.64 5.47 42.49 2.90
56 57 3.371168 TCAAAAGCGTTGTTTGATGAGC 58.629 40.909 6.30 0.00 39.46 4.26
57 58 2.422276 AAAGCGTTGTTTGATGAGCC 57.578 45.000 0.00 0.00 0.00 4.70
58 59 1.609208 AAGCGTTGTTTGATGAGCCT 58.391 45.000 0.00 0.00 0.00 4.58
59 60 0.877071 AGCGTTGTTTGATGAGCCTG 59.123 50.000 0.00 0.00 0.00 4.85
60 61 0.730494 GCGTTGTTTGATGAGCCTGC 60.730 55.000 0.00 0.00 0.00 4.85
61 62 0.453282 CGTTGTTTGATGAGCCTGCG 60.453 55.000 0.00 0.00 0.00 5.18
62 63 0.593128 GTTGTTTGATGAGCCTGCGT 59.407 50.000 0.00 0.00 0.00 5.24
63 64 1.804151 GTTGTTTGATGAGCCTGCGTA 59.196 47.619 0.00 0.00 0.00 4.42
64 65 1.725641 TGTTTGATGAGCCTGCGTAG 58.274 50.000 0.00 0.00 0.00 3.51
65 66 1.001974 TGTTTGATGAGCCTGCGTAGT 59.998 47.619 0.00 0.00 0.00 2.73
66 67 2.232696 TGTTTGATGAGCCTGCGTAGTA 59.767 45.455 0.00 0.00 0.00 1.82
67 68 3.118775 TGTTTGATGAGCCTGCGTAGTAT 60.119 43.478 0.00 0.00 0.00 2.12
68 69 3.819564 TTGATGAGCCTGCGTAGTATT 57.180 42.857 0.00 0.00 0.00 1.89
69 70 4.929819 TTGATGAGCCTGCGTAGTATTA 57.070 40.909 0.00 0.00 0.00 0.98
70 71 4.505313 TGATGAGCCTGCGTAGTATTAG 57.495 45.455 0.00 0.00 0.00 1.73
71 72 3.255888 TGATGAGCCTGCGTAGTATTAGG 59.744 47.826 0.00 0.00 0.00 2.69
72 73 2.662866 TGAGCCTGCGTAGTATTAGGT 58.337 47.619 0.00 0.00 32.85 3.08
73 74 3.824133 TGAGCCTGCGTAGTATTAGGTA 58.176 45.455 0.00 0.00 32.85 3.08
74 75 3.819337 TGAGCCTGCGTAGTATTAGGTAG 59.181 47.826 0.00 0.00 32.85 3.18
75 76 3.819902 GAGCCTGCGTAGTATTAGGTAGT 59.180 47.826 0.00 0.00 32.85 2.73
76 77 4.213513 AGCCTGCGTAGTATTAGGTAGTT 58.786 43.478 0.00 0.00 32.85 2.24
77 78 4.037684 AGCCTGCGTAGTATTAGGTAGTTG 59.962 45.833 0.00 0.00 32.85 3.16
78 79 4.795308 GCCTGCGTAGTATTAGGTAGTTGG 60.795 50.000 0.00 0.00 32.85 3.77
79 80 4.340381 CCTGCGTAGTATTAGGTAGTTGGT 59.660 45.833 0.00 0.00 0.00 3.67
80 81 5.505173 TGCGTAGTATTAGGTAGTTGGTC 57.495 43.478 0.00 0.00 0.00 4.02
81 82 4.949238 TGCGTAGTATTAGGTAGTTGGTCA 59.051 41.667 0.00 0.00 0.00 4.02
82 83 5.418524 TGCGTAGTATTAGGTAGTTGGTCAA 59.581 40.000 0.00 0.00 0.00 3.18
83 84 6.071447 TGCGTAGTATTAGGTAGTTGGTCAAA 60.071 38.462 0.00 0.00 0.00 2.69
84 85 6.982724 GCGTAGTATTAGGTAGTTGGTCAAAT 59.017 38.462 0.00 0.00 0.00 2.32
85 86 7.493645 GCGTAGTATTAGGTAGTTGGTCAAATT 59.506 37.037 0.00 0.00 0.00 1.82
86 87 9.374838 CGTAGTATTAGGTAGTTGGTCAAATTT 57.625 33.333 0.00 0.00 0.00 1.82
95 96 9.416284 AGGTAGTTGGTCAAATTTTTAAGAAGA 57.584 29.630 0.00 0.00 0.00 2.87
138 139 9.912634 AGAATTGTTACAAATATGTTTCACAGG 57.087 29.630 0.66 0.00 41.05 4.00
139 140 9.691362 GAATTGTTACAAATATGTTTCACAGGT 57.309 29.630 0.66 0.00 41.05 4.00
141 142 8.864069 TTGTTACAAATATGTTTCACAGGTTG 57.136 30.769 0.00 0.00 41.05 3.77
142 143 7.429633 TGTTACAAATATGTTTCACAGGTTGG 58.570 34.615 0.00 0.00 41.05 3.77
143 144 5.467035 ACAAATATGTTTCACAGGTTGGG 57.533 39.130 0.00 0.00 35.91 4.12
144 145 4.898861 ACAAATATGTTTCACAGGTTGGGT 59.101 37.500 0.00 0.00 35.91 4.51
145 146 5.221422 ACAAATATGTTTCACAGGTTGGGTG 60.221 40.000 0.00 0.00 35.91 4.61
146 147 1.039856 ATGTTTCACAGGTTGGGTGC 58.960 50.000 0.00 0.00 36.22 5.01
147 148 0.033601 TGTTTCACAGGTTGGGTGCT 60.034 50.000 0.00 0.00 36.22 4.40
162 163 1.559831 GTGCTTGCAAAACTGGACAC 58.440 50.000 0.00 0.00 0.00 3.67
305 308 9.952030 AGAAAATTTTAGGGTTTTTCAACTGAA 57.048 25.926 2.75 0.00 40.26 3.02
388 391 8.927059 TTAGGGCAAGTAGAATATATATGGGT 57.073 34.615 0.00 0.00 0.00 4.51
389 392 7.200434 AGGGCAAGTAGAATATATATGGGTG 57.800 40.000 0.00 0.00 0.00 4.61
390 393 6.735704 AGGGCAAGTAGAATATATATGGGTGT 59.264 38.462 0.00 0.00 0.00 4.16
391 394 6.823689 GGGCAAGTAGAATATATATGGGTGTG 59.176 42.308 0.00 0.00 0.00 3.82
392 395 7.394816 GGCAAGTAGAATATATATGGGTGTGT 58.605 38.462 0.00 0.00 0.00 3.72
393 396 7.549488 GGCAAGTAGAATATATATGGGTGTGTC 59.451 40.741 0.00 0.00 0.00 3.67
394 397 8.314751 GCAAGTAGAATATATATGGGTGTGTCT 58.685 37.037 0.00 0.00 0.00 3.41
397 400 9.702253 AGTAGAATATATATGGGTGTGTCTAGG 57.298 37.037 0.00 0.00 0.00 3.02
398 401 7.979786 AGAATATATATGGGTGTGTCTAGGG 57.020 40.000 0.00 0.00 0.00 3.53
399 402 6.384305 AGAATATATATGGGTGTGTCTAGGGC 59.616 42.308 0.00 0.00 0.00 5.19
400 403 2.190398 ATATGGGTGTGTCTAGGGCA 57.810 50.000 0.00 0.00 0.00 5.36
401 404 1.200519 TATGGGTGTGTCTAGGGCAC 58.799 55.000 10.20 10.20 37.37 5.01
402 405 0.840288 ATGGGTGTGTCTAGGGCACA 60.840 55.000 14.22 14.22 43.60 4.57
403 406 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
404 407 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
405 408 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
406 409 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
407 410 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
408 411 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
409 412 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
410 413 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
425 428 5.215252 TCTAGATGTGCCCTAGTTATTGC 57.785 43.478 0.00 0.00 36.06 3.56
426 429 3.931907 AGATGTGCCCTAGTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
431 434 3.931907 TGCCCTAGTTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
433 436 5.366482 TGCCCTAGTTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
434 437 5.368145 TGCCCTAGTTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
435 438 5.104527 TGCCCTAGTTATTGCACATCTAAGT 60.105 40.000 0.00 0.00 0.00 2.24
436 439 5.237344 GCCCTAGTTATTGCACATCTAAGTG 59.763 44.000 0.00 0.00 42.37 3.16
437 440 6.582636 CCCTAGTTATTGCACATCTAAGTGA 58.417 40.000 0.00 0.00 42.05 3.41
438 441 7.047891 CCCTAGTTATTGCACATCTAAGTGAA 58.952 38.462 0.00 0.00 42.05 3.18
439 442 7.716998 CCCTAGTTATTGCACATCTAAGTGAAT 59.283 37.037 0.00 0.00 42.05 2.57
440 443 8.554528 CCTAGTTATTGCACATCTAAGTGAATG 58.445 37.037 0.00 0.00 42.05 2.67
441 444 9.317936 CTAGTTATTGCACATCTAAGTGAATGA 57.682 33.333 0.00 0.00 42.05 2.57
442 445 8.565896 AGTTATTGCACATCTAAGTGAATGAA 57.434 30.769 0.00 0.00 42.05 2.57
443 446 9.182214 AGTTATTGCACATCTAAGTGAATGAAT 57.818 29.630 0.00 0.00 42.05 2.57
444 447 9.443283 GTTATTGCACATCTAAGTGAATGAATC 57.557 33.333 0.00 0.00 42.05 2.52
445 448 7.634671 ATTGCACATCTAAGTGAATGAATCA 57.365 32.000 0.00 0.00 42.05 2.57
446 449 7.451501 TTGCACATCTAAGTGAATGAATCAA 57.548 32.000 0.00 0.00 42.05 2.57
447 450 7.451501 TGCACATCTAAGTGAATGAATCAAA 57.548 32.000 0.00 0.00 42.05 2.69
448 451 7.307694 TGCACATCTAAGTGAATGAATCAAAC 58.692 34.615 0.00 0.00 42.05 2.93
449 452 7.040548 TGCACATCTAAGTGAATGAATCAAACA 60.041 33.333 0.00 0.00 42.05 2.83
450 453 7.972277 GCACATCTAAGTGAATGAATCAAACAT 59.028 33.333 0.00 0.00 42.05 2.71
494 497 9.442047 AGAGAAAGAAAATATTCACACGAATCT 57.558 29.630 0.00 0.00 41.09 2.40
528 531 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
529 532 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
530 533 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
531 534 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
532 535 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
533 536 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
534 537 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
535 538 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
536 539 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
540 543 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
541 544 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
542 545 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
600 603 5.853572 AGGTATTTTCTTTGAGGGGTACA 57.146 39.130 0.00 0.00 0.00 2.90
601 604 6.402981 AGGTATTTTCTTTGAGGGGTACAT 57.597 37.500 0.00 0.00 0.00 2.29
602 605 7.519347 AGGTATTTTCTTTGAGGGGTACATA 57.481 36.000 0.00 0.00 0.00 2.29
603 606 8.114301 AGGTATTTTCTTTGAGGGGTACATAT 57.886 34.615 0.00 0.00 0.00 1.78
604 607 8.218488 AGGTATTTTCTTTGAGGGGTACATATC 58.782 37.037 0.00 0.00 0.00 1.63
605 608 8.218488 GGTATTTTCTTTGAGGGGTACATATCT 58.782 37.037 0.00 0.00 0.00 1.98
606 609 9.628500 GTATTTTCTTTGAGGGGTACATATCTT 57.372 33.333 0.00 0.00 0.00 2.40
607 610 7.938140 TTTTCTTTGAGGGGTACATATCTTG 57.062 36.000 0.00 0.00 0.00 3.02
608 611 6.636454 TTCTTTGAGGGGTACATATCTTGT 57.364 37.500 0.00 0.00 42.62 3.16
609 612 6.636454 TCTTTGAGGGGTACATATCTTGTT 57.364 37.500 0.00 0.00 39.87 2.83
610 613 7.027874 TCTTTGAGGGGTACATATCTTGTTT 57.972 36.000 0.00 0.00 39.87 2.83
611 614 7.466804 TCTTTGAGGGGTACATATCTTGTTTT 58.533 34.615 0.00 0.00 39.87 2.43
612 615 7.947890 TCTTTGAGGGGTACATATCTTGTTTTT 59.052 33.333 0.00 0.00 39.87 1.94
641 644 9.905713 TTGAGCAAAAGGTATGTATCTAGATTT 57.094 29.630 11.25 0.00 0.00 2.17
662 665 8.970813 AGATTTATATATTTTTGAGGGGGAGGT 58.029 33.333 0.00 0.00 0.00 3.85
666 669 7.663501 ATATATTTTTGAGGGGGAGGTATGT 57.336 36.000 0.00 0.00 0.00 2.29
667 670 8.766492 ATATATTTTTGAGGGGGAGGTATGTA 57.234 34.615 0.00 0.00 0.00 2.29
668 671 7.663501 ATATTTTTGAGGGGGAGGTATGTAT 57.336 36.000 0.00 0.00 0.00 2.29
669 672 5.382664 TTTTTGAGGGGGAGGTATGTATC 57.617 43.478 0.00 0.00 0.00 2.24
670 673 2.715763 TGAGGGGGAGGTATGTATCC 57.284 55.000 0.00 0.00 34.64 2.59
671 674 2.161624 TGAGGGGGAGGTATGTATCCT 58.838 52.381 0.00 0.00 38.09 3.24
672 675 2.527057 TGAGGGGGAGGTATGTATCCTT 59.473 50.000 0.00 0.00 35.20 3.36
673 676 3.050564 TGAGGGGGAGGTATGTATCCTTT 60.051 47.826 0.00 0.00 35.20 3.11
674 677 3.981375 GAGGGGGAGGTATGTATCCTTTT 59.019 47.826 0.00 0.00 35.20 2.27
675 678 4.390008 AGGGGGAGGTATGTATCCTTTTT 58.610 43.478 0.00 0.00 35.20 1.94
726 729 9.661563 TTTTTGTGACAAGGTAGGTATGTATAG 57.338 33.333 0.00 0.00 0.00 1.31
727 730 8.598202 TTTGTGACAAGGTAGGTATGTATAGA 57.402 34.615 0.00 0.00 0.00 1.98
728 731 8.777578 TTGTGACAAGGTAGGTATGTATAGAT 57.222 34.615 0.00 0.00 0.00 1.98
729 732 8.178313 TGTGACAAGGTAGGTATGTATAGATG 57.822 38.462 0.00 0.00 0.00 2.90
739 742 6.573434 AGGTATGTATAGATGTGTGTGTGTG 58.427 40.000 0.00 0.00 0.00 3.82
752 755 9.755064 GATGTGTGTGTGTGTATTTATCTAAAC 57.245 33.333 0.00 0.00 0.00 2.01
753 756 8.664211 TGTGTGTGTGTGTATTTATCTAAACA 57.336 30.769 0.00 0.00 0.00 2.83
754 757 8.769891 TGTGTGTGTGTGTATTTATCTAAACAG 58.230 33.333 0.00 0.00 0.00 3.16
755 758 7.744715 GTGTGTGTGTGTATTTATCTAAACAGC 59.255 37.037 0.00 0.00 0.00 4.40
756 759 7.659799 TGTGTGTGTGTATTTATCTAAACAGCT 59.340 33.333 0.00 0.00 0.00 4.24
757 760 7.957484 GTGTGTGTGTATTTATCTAAACAGCTG 59.043 37.037 13.48 13.48 0.00 4.24
758 761 7.659799 TGTGTGTGTATTTATCTAAACAGCTGT 59.340 33.333 15.25 15.25 0.00 4.40
759 762 8.169268 GTGTGTGTATTTATCTAAACAGCTGTC 58.831 37.037 21.95 3.16 0.00 3.51
760 763 7.875554 TGTGTGTATTTATCTAAACAGCTGTCA 59.124 33.333 21.95 10.41 0.00 3.58
761 764 8.717821 GTGTGTATTTATCTAAACAGCTGTCAA 58.282 33.333 21.95 10.39 0.00 3.18
762 765 9.448438 TGTGTATTTATCTAAACAGCTGTCAAT 57.552 29.630 21.95 12.19 0.00 2.57
763 766 9.922305 GTGTATTTATCTAAACAGCTGTCAATC 57.078 33.333 21.95 2.37 0.00 2.67
764 767 9.109393 TGTATTTATCTAAACAGCTGTCAATCC 57.891 33.333 21.95 2.47 0.00 3.01
765 768 9.109393 GTATTTATCTAAACAGCTGTCAATCCA 57.891 33.333 21.95 2.64 0.00 3.41
767 770 7.994425 TTATCTAAACAGCTGTCAATCCAAA 57.006 32.000 21.95 7.03 0.00 3.28
768 771 5.947228 TCTAAACAGCTGTCAATCCAAAG 57.053 39.130 21.95 8.78 0.00 2.77
769 772 3.375782 AAACAGCTGTCAATCCAAAGC 57.624 42.857 21.95 0.00 35.86 3.51
770 773 1.251251 ACAGCTGTCAATCCAAAGCC 58.749 50.000 15.25 0.00 36.28 4.35
771 774 1.202976 ACAGCTGTCAATCCAAAGCCT 60.203 47.619 15.25 0.00 36.28 4.58
772 775 2.040278 ACAGCTGTCAATCCAAAGCCTA 59.960 45.455 15.25 0.00 36.28 3.93
773 776 3.285484 CAGCTGTCAATCCAAAGCCTAT 58.715 45.455 5.25 0.00 36.28 2.57
774 777 3.314635 CAGCTGTCAATCCAAAGCCTATC 59.685 47.826 5.25 0.00 36.28 2.08
776 779 4.410228 AGCTGTCAATCCAAAGCCTATCTA 59.590 41.667 0.00 0.00 36.28 1.98
777 780 4.754114 GCTGTCAATCCAAAGCCTATCTAG 59.246 45.833 0.00 0.00 0.00 2.43
778 781 5.453903 GCTGTCAATCCAAAGCCTATCTAGA 60.454 44.000 0.00 0.00 0.00 2.43
779 782 5.918608 TGTCAATCCAAAGCCTATCTAGAC 58.081 41.667 0.00 0.00 0.00 2.59
780 783 5.425217 TGTCAATCCAAAGCCTATCTAGACA 59.575 40.000 0.00 0.00 0.00 3.41
781 784 6.070251 TGTCAATCCAAAGCCTATCTAGACAA 60.070 38.462 0.00 0.00 0.00 3.18
782 785 6.258947 GTCAATCCAAAGCCTATCTAGACAAC 59.741 42.308 0.00 0.00 0.00 3.32
783 786 4.755266 TCCAAAGCCTATCTAGACAACC 57.245 45.455 0.00 0.00 0.00 3.77
785 788 4.081087 TCCAAAGCCTATCTAGACAACCAC 60.081 45.833 0.00 0.00 0.00 4.16
787 790 5.431765 CAAAGCCTATCTAGACAACCACAT 58.568 41.667 0.00 0.00 0.00 3.21
788 791 4.946478 AGCCTATCTAGACAACCACATC 57.054 45.455 0.00 0.00 0.00 3.06
789 792 4.551671 AGCCTATCTAGACAACCACATCT 58.448 43.478 0.00 0.00 0.00 2.90
790 793 5.706447 AGCCTATCTAGACAACCACATCTA 58.294 41.667 0.00 0.00 0.00 1.98
791 794 5.772672 AGCCTATCTAGACAACCACATCTAG 59.227 44.000 0.00 2.48 43.94 2.43
793 796 5.536538 CCTATCTAGACAACCACATCTAGCA 59.463 44.000 0.00 0.00 42.80 3.49
794 797 4.991153 TCTAGACAACCACATCTAGCAG 57.009 45.455 3.83 0.00 42.80 4.24
795 798 3.701542 TCTAGACAACCACATCTAGCAGG 59.298 47.826 3.83 0.00 42.80 4.85
798 801 3.003480 GACAACCACATCTAGCAGGTTC 58.997 50.000 0.00 0.00 42.15 3.62
799 802 2.002586 CAACCACATCTAGCAGGTTCG 58.997 52.381 0.00 0.00 42.15 3.95
801 804 0.811616 CCACATCTAGCAGGTTCGGC 60.812 60.000 0.00 0.00 0.00 5.54
803 806 1.227674 CATCTAGCAGGTTCGGCCC 60.228 63.158 0.00 0.00 38.26 5.80
804 807 1.689233 ATCTAGCAGGTTCGGCCCA 60.689 57.895 0.00 0.00 38.26 5.36
807 810 0.815615 CTAGCAGGTTCGGCCCATTC 60.816 60.000 0.00 0.00 38.26 2.67
808 811 1.558167 TAGCAGGTTCGGCCCATTCA 61.558 55.000 0.00 0.00 38.26 2.57
812 815 1.379843 GGTTCGGCCCATTCATGGT 60.380 57.895 0.00 0.00 46.65 3.55
813 816 1.666209 GGTTCGGCCCATTCATGGTG 61.666 60.000 0.00 0.00 46.65 4.17
814 817 0.679640 GTTCGGCCCATTCATGGTGA 60.680 55.000 0.00 0.00 46.65 4.02
815 818 0.038890 TTCGGCCCATTCATGGTGAA 59.961 50.000 0.00 3.75 46.65 3.18
816 819 0.394216 TCGGCCCATTCATGGTGAAG 60.394 55.000 0.00 0.00 46.65 3.02
817 820 0.680921 CGGCCCATTCATGGTGAAGT 60.681 55.000 0.00 0.00 46.65 3.01
819 822 0.819582 GCCCATTCATGGTGAAGTGG 59.180 55.000 5.09 11.13 46.65 4.00
820 823 1.477553 CCCATTCATGGTGAAGTGGG 58.522 55.000 17.64 17.64 46.65 4.61
821 824 0.819582 CCATTCATGGTGAAGTGGGC 59.180 55.000 0.00 0.00 40.05 5.36
822 825 0.452987 CATTCATGGTGAAGTGGGCG 59.547 55.000 0.00 0.00 40.05 6.13
823 826 1.315257 ATTCATGGTGAAGTGGGCGC 61.315 55.000 0.00 0.00 40.05 6.53
824 827 2.672651 CATGGTGAAGTGGGCGCA 60.673 61.111 10.83 0.00 0.00 6.09
825 828 2.048023 CATGGTGAAGTGGGCGCAT 61.048 57.895 10.83 0.00 0.00 4.73
826 829 2.048023 ATGGTGAAGTGGGCGCATG 61.048 57.895 10.83 0.00 0.00 4.06
827 830 4.120331 GGTGAAGTGGGCGCATGC 62.120 66.667 10.83 7.91 41.71 4.06
828 831 3.364441 GTGAAGTGGGCGCATGCA 61.364 61.111 19.57 2.83 45.35 3.96
829 832 2.596923 TGAAGTGGGCGCATGCAA 60.597 55.556 19.57 0.00 45.35 4.08
831 834 1.216178 GAAGTGGGCGCATGCAAAT 59.784 52.632 19.57 0.00 45.35 2.32
832 835 0.803380 GAAGTGGGCGCATGCAAATC 60.803 55.000 19.57 4.47 45.35 2.17
833 836 1.534336 AAGTGGGCGCATGCAAATCA 61.534 50.000 19.57 7.19 45.35 2.57
834 837 1.142314 GTGGGCGCATGCAAATCAT 59.858 52.632 19.57 0.00 45.35 2.45
860 863 7.881751 TGCAATAAGATCTAAGATGGGATCAAG 59.118 37.037 0.00 0.00 40.32 3.02
869 872 0.107508 ATGGGATCAAGTCACGCCTG 60.108 55.000 0.00 0.00 30.69 4.85
896 904 1.871039 TCGTTAGCTCCAACAAACTGC 59.129 47.619 0.00 0.00 0.00 4.40
931 939 3.313526 CCGCAAGAAGAACTATTCCCATG 59.686 47.826 0.00 0.00 43.02 3.66
932 940 4.191544 CGCAAGAAGAACTATTCCCATGA 58.808 43.478 0.00 0.00 43.02 3.07
933 941 4.818546 CGCAAGAAGAACTATTCCCATGAT 59.181 41.667 0.00 0.00 43.02 2.45
949 957 9.887862 ATTCCCATGATTAATCTTTATCCAACT 57.112 29.630 16.24 0.00 0.00 3.16
1049 1678 2.568696 ACCACAATCTCATCGTCTCG 57.431 50.000 0.00 0.00 0.00 4.04
1349 2018 1.995626 CATCCCCGTCAAGGAGGGT 60.996 63.158 4.48 0.00 46.17 4.34
1703 2499 4.157120 GACGTGGACATCCCGGGG 62.157 72.222 23.50 6.77 37.93 5.73
1817 2613 3.074369 TGCTCGCCGGGATTCTCA 61.074 61.111 2.18 0.00 0.00 3.27
1820 2616 1.443407 CTCGCCGGGATTCTCATGT 59.557 57.895 2.18 0.00 0.00 3.21
1964 2760 3.128242 GGTTCTTCGTCGTCTCCAAGATA 59.872 47.826 0.00 0.00 0.00 1.98
1970 2766 1.609555 GTCGTCTCCAAGATAGCCGAT 59.390 52.381 0.00 0.00 0.00 4.18
2116 2949 6.091849 GCATACGTATCTGATCTGATGCATTT 59.908 38.462 23.52 13.26 38.60 2.32
2141 2974 9.921637 TTTTTCTGTCATGTATATTTTGGTTCC 57.078 29.630 0.00 0.00 0.00 3.62
2149 2982 6.334102 TGTATATTTTGGTTCCGTTTTGCT 57.666 33.333 0.00 0.00 0.00 3.91
2150 2983 6.383415 TGTATATTTTGGTTCCGTTTTGCTC 58.617 36.000 0.00 0.00 0.00 4.26
2157 2990 3.243367 TGGTTCCGTTTTGCTCAATTCAG 60.243 43.478 0.00 0.00 0.00 3.02
2162 2995 3.436704 CCGTTTTGCTCAATTCAGCTAGA 59.563 43.478 2.11 0.00 40.39 2.43
2212 3045 2.232941 AGCTCCAAAATTCTGTGGCATG 59.767 45.455 0.00 0.00 34.68 4.06
2217 3050 5.435291 TCCAAAATTCTGTGGCATGTTTTT 58.565 33.333 0.00 0.00 34.68 1.94
2223 3056 3.030291 TCTGTGGCATGTTTTTCACCTT 58.970 40.909 0.00 0.00 0.00 3.50
2294 3236 7.894753 TTGGATTTCCATATATGCTCAACAA 57.105 32.000 7.24 5.32 46.97 2.83
2424 3466 9.807921 TTTTGAAGGGAGTTATACAGAAAGATT 57.192 29.630 0.00 0.00 0.00 2.40
2429 3471 7.155328 AGGGAGTTATACAGAAAGATTATGCG 58.845 38.462 0.00 0.00 0.00 4.73
2493 3677 4.896080 GCATGTTGCATTTTTATTTCCCG 58.104 39.130 0.00 0.00 44.26 5.14
2515 3699 7.876068 TCCCGTACATTTCCATTATATTCTGAC 59.124 37.037 0.00 0.00 0.00 3.51
2619 3928 2.710902 GGCAATTTCCCCGGCAGTC 61.711 63.158 0.00 0.00 0.00 3.51
2725 4372 5.600484 CCCAACTAGATCAGAAGTACATCCT 59.400 44.000 0.00 0.00 0.00 3.24
2754 4401 4.130118 GCATGCTAGGAGCTTAGCTTTTA 58.870 43.478 11.37 3.43 44.99 1.52
2834 4487 5.673337 TGAATTCGCAGATGTAATAAGCC 57.327 39.130 0.04 0.00 35.04 4.35
2911 4564 7.698163 ATTAATATTCAGTGGAGGTCCTTCT 57.302 36.000 0.00 0.00 36.82 2.85
2934 4587 7.382110 TCTATCCATTATTCTTGCAGCTACTC 58.618 38.462 0.00 0.00 0.00 2.59
2963 4616 1.034356 TCTTTGCAATGCAGTGTGCT 58.966 45.000 16.47 0.00 45.31 4.40
3049 4709 1.482593 GGCAGGCGATATAGTAGGCAT 59.517 52.381 0.00 0.00 0.00 4.40
3068 4728 6.911308 AGGCATATTACAACAGGGATAAAGT 58.089 36.000 0.00 0.00 0.00 2.66
3080 4740 5.121811 CAGGGATAAAGTGGAAGACATCAG 58.878 45.833 0.00 0.00 0.00 2.90
3129 4807 2.109126 GCGTCCAGAAGCACCATCC 61.109 63.158 0.47 0.00 35.86 3.51
3131 4809 1.450312 GTCCAGAAGCACCATCCCG 60.450 63.158 0.00 0.00 0.00 5.14
3162 4840 1.582968 CGCAAAGCACCAGAAGCAT 59.417 52.632 0.00 0.00 0.00 3.79
3216 4913 7.387948 TGAGGTTTATGCTCTTCAAACTTCTAC 59.612 37.037 9.11 0.00 38.42 2.59
3251 4971 6.922957 TCGTTACGTTTATGGTTCTACACTTT 59.077 34.615 4.24 0.00 0.00 2.66
3288 5008 4.884164 TCTAGATTGTCGATCTGCAGAGAA 59.116 41.667 22.96 6.97 44.80 2.87
3292 5012 3.156511 TGTCGATCTGCAGAGAACATC 57.843 47.619 22.96 13.03 0.00 3.06
3293 5013 2.159184 TGTCGATCTGCAGAGAACATCC 60.159 50.000 22.96 6.56 0.00 3.51
3294 5014 2.102578 TCGATCTGCAGAGAACATCCA 58.897 47.619 22.96 0.00 0.00 3.41
3295 5015 2.100418 TCGATCTGCAGAGAACATCCAG 59.900 50.000 22.96 3.02 0.00 3.86
3296 5016 2.159128 CGATCTGCAGAGAACATCCAGT 60.159 50.000 22.96 0.03 0.00 4.00
3302 5030 3.257393 GCAGAGAACATCCAGTGTACAG 58.743 50.000 0.00 0.00 41.14 2.74
3373 5101 1.339929 TCTTAGACTGTTGTGCTCGCA 59.660 47.619 0.00 0.00 0.00 5.10
3376 5104 2.455674 AGACTGTTGTGCTCGCATTA 57.544 45.000 0.00 0.00 0.00 1.90
3444 6024 9.905713 ACTAGGCTTTATTCAGAAATCATAACA 57.094 29.630 0.00 0.00 0.00 2.41
3466 6046 4.085357 AGCGGAATACAAGCAATATCCA 57.915 40.909 0.00 0.00 0.00 3.41
3474 6054 3.689347 ACAAGCAATATCCAGCAGAACA 58.311 40.909 0.00 0.00 0.00 3.18
3479 6059 3.812053 GCAATATCCAGCAGAACACCTAG 59.188 47.826 0.00 0.00 0.00 3.02
3502 6084 2.933287 ATGGCGACCCACCTCCAA 60.933 61.111 0.00 0.00 45.77 3.53
3528 6112 3.058639 CACAACTCCTTTTGCTAGAGTGC 60.059 47.826 0.00 0.00 39.92 4.40
3533 6117 2.028476 TCCTTTTGCTAGAGTGCGCTTA 60.028 45.455 9.73 0.00 35.36 3.09
3537 6121 4.404507 TTTGCTAGAGTGCGCTTAAAAG 57.595 40.909 9.73 1.87 35.36 2.27
3538 6122 3.313012 TGCTAGAGTGCGCTTAAAAGA 57.687 42.857 9.73 0.00 35.36 2.52
3576 6160 5.265477 TCAAATCGCAAATCTATGAAAGCG 58.735 37.500 0.00 0.00 45.79 4.68
3618 6202 0.172578 TATCGTTCAGGACCTGTGCG 59.827 55.000 21.06 22.94 33.84 5.34
3628 6212 0.391130 GACCTGTGCGTATGAAGGCA 60.391 55.000 0.77 0.00 43.85 4.75
3659 6247 3.921677 TCCTTATGTTTGTGACGACCTC 58.078 45.455 0.00 0.00 0.00 3.85
3681 6269 1.598130 GCAGTCCGAGGCAACAACT 60.598 57.895 0.00 0.00 41.41 3.16
3718 6306 6.940831 TCAAATCTTGTGTCAGAACAATGA 57.059 33.333 0.00 0.00 39.25 2.57
3828 6416 0.664761 CCCTTATCAGTGCCGCATTG 59.335 55.000 9.51 9.51 0.00 2.82
3829 6417 0.664761 CCTTATCAGTGCCGCATTGG 59.335 55.000 15.13 0.17 42.50 3.16
3840 6428 3.744941 CGCATTGGCAAATGTGGAT 57.255 47.368 18.09 0.00 46.20 3.41
3841 6429 1.282817 CGCATTGGCAAATGTGGATG 58.717 50.000 18.09 0.00 46.20 3.51
3842 6430 1.135053 CGCATTGGCAAATGTGGATGA 60.135 47.619 18.09 0.00 46.20 2.92
3843 6431 2.674462 CGCATTGGCAAATGTGGATGAA 60.674 45.455 18.09 0.00 46.20 2.57
3844 6432 2.933906 GCATTGGCAAATGTGGATGAAG 59.066 45.455 15.28 0.00 44.34 3.02
3845 6433 3.527533 CATTGGCAAATGTGGATGAAGG 58.472 45.455 3.01 0.00 38.72 3.46
3846 6434 2.307496 TGGCAAATGTGGATGAAGGT 57.693 45.000 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.526211 GGATTTGGCCCGAACTGTTC 59.474 55.000 10.48 10.48 0.00 3.18
6 7 0.112412 AGGATTTGGCCCGAACTGTT 59.888 50.000 0.00 0.00 0.00 3.16
7 8 0.609131 CAGGATTTGGCCCGAACTGT 60.609 55.000 0.00 0.00 0.00 3.55
8 9 0.322456 TCAGGATTTGGCCCGAACTG 60.322 55.000 0.00 2.51 0.00 3.16
9 10 0.404040 TTCAGGATTTGGCCCGAACT 59.596 50.000 0.00 0.00 0.00 3.01
10 11 0.811281 CTTCAGGATTTGGCCCGAAC 59.189 55.000 0.00 0.00 0.00 3.95
11 12 0.695924 TCTTCAGGATTTGGCCCGAA 59.304 50.000 0.00 0.00 0.00 4.30
12 13 0.695924 TTCTTCAGGATTTGGCCCGA 59.304 50.000 0.00 0.00 0.00 5.14
13 14 1.474077 CTTTCTTCAGGATTTGGCCCG 59.526 52.381 0.00 0.00 0.00 6.13
14 15 1.205655 GCTTTCTTCAGGATTTGGCCC 59.794 52.381 0.00 0.00 0.00 5.80
15 16 2.165234 GAGCTTTCTTCAGGATTTGGCC 59.835 50.000 0.00 0.00 0.00 5.36
16 17 2.821969 TGAGCTTTCTTCAGGATTTGGC 59.178 45.455 0.00 0.00 0.00 4.52
17 18 5.458041 TTTGAGCTTTCTTCAGGATTTGG 57.542 39.130 0.00 0.00 0.00 3.28
18 19 5.404667 GCTTTTGAGCTTTCTTCAGGATTTG 59.595 40.000 0.00 0.00 0.00 2.32
19 20 5.536260 GCTTTTGAGCTTTCTTCAGGATTT 58.464 37.500 0.00 0.00 0.00 2.17
20 21 4.320788 CGCTTTTGAGCTTTCTTCAGGATT 60.321 41.667 0.00 0.00 0.00 3.01
21 22 3.190118 CGCTTTTGAGCTTTCTTCAGGAT 59.810 43.478 0.00 0.00 0.00 3.24
22 23 2.549754 CGCTTTTGAGCTTTCTTCAGGA 59.450 45.455 0.00 0.00 0.00 3.86
23 24 2.291741 ACGCTTTTGAGCTTTCTTCAGG 59.708 45.455 0.00 0.00 0.00 3.86
24 25 3.615849 ACGCTTTTGAGCTTTCTTCAG 57.384 42.857 0.00 0.00 0.00 3.02
25 26 3.128589 ACAACGCTTTTGAGCTTTCTTCA 59.871 39.130 2.19 0.00 0.00 3.02
26 27 3.695816 ACAACGCTTTTGAGCTTTCTTC 58.304 40.909 2.19 0.00 0.00 2.87
27 28 3.782889 ACAACGCTTTTGAGCTTTCTT 57.217 38.095 2.19 0.00 0.00 2.52
28 29 3.782889 AACAACGCTTTTGAGCTTTCT 57.217 38.095 2.19 0.00 0.00 2.52
29 30 3.857093 TCAAACAACGCTTTTGAGCTTTC 59.143 39.130 2.19 0.00 37.91 2.62
30 31 3.843999 TCAAACAACGCTTTTGAGCTTT 58.156 36.364 2.19 0.00 37.91 3.51
31 32 3.502191 TCAAACAACGCTTTTGAGCTT 57.498 38.095 2.19 0.00 37.91 3.74
32 33 3.066621 TCATCAAACAACGCTTTTGAGCT 59.933 39.130 11.08 0.00 44.17 4.09
33 34 3.371168 TCATCAAACAACGCTTTTGAGC 58.629 40.909 11.08 0.00 44.17 4.26
34 35 3.423206 GCTCATCAAACAACGCTTTTGAG 59.577 43.478 11.08 0.00 44.17 3.02
35 36 3.371168 GCTCATCAAACAACGCTTTTGA 58.629 40.909 8.59 8.59 44.84 2.69
36 37 2.472488 GGCTCATCAAACAACGCTTTTG 59.528 45.455 0.00 0.00 35.61 2.44
37 38 2.362077 AGGCTCATCAAACAACGCTTTT 59.638 40.909 0.00 0.00 0.00 2.27
38 39 1.956477 AGGCTCATCAAACAACGCTTT 59.044 42.857 0.00 0.00 0.00 3.51
39 40 1.267806 CAGGCTCATCAAACAACGCTT 59.732 47.619 0.00 0.00 0.00 4.68
40 41 0.877071 CAGGCTCATCAAACAACGCT 59.123 50.000 0.00 0.00 0.00 5.07
41 42 0.730494 GCAGGCTCATCAAACAACGC 60.730 55.000 0.00 0.00 0.00 4.84
42 43 0.453282 CGCAGGCTCATCAAACAACG 60.453 55.000 0.00 0.00 0.00 4.10
43 44 0.593128 ACGCAGGCTCATCAAACAAC 59.407 50.000 0.00 0.00 0.00 3.32
44 45 2.076100 CTACGCAGGCTCATCAAACAA 58.924 47.619 0.00 0.00 0.00 2.83
45 46 1.001974 ACTACGCAGGCTCATCAAACA 59.998 47.619 0.00 0.00 0.00 2.83
46 47 1.726853 ACTACGCAGGCTCATCAAAC 58.273 50.000 0.00 0.00 0.00 2.93
47 48 3.819564 ATACTACGCAGGCTCATCAAA 57.180 42.857 0.00 0.00 0.00 2.69
48 49 3.819564 AATACTACGCAGGCTCATCAA 57.180 42.857 0.00 0.00 0.00 2.57
49 50 3.255888 CCTAATACTACGCAGGCTCATCA 59.744 47.826 0.00 0.00 0.00 3.07
50 51 3.256136 ACCTAATACTACGCAGGCTCATC 59.744 47.826 0.00 0.00 0.00 2.92
51 52 3.231818 ACCTAATACTACGCAGGCTCAT 58.768 45.455 0.00 0.00 0.00 2.90
52 53 2.662866 ACCTAATACTACGCAGGCTCA 58.337 47.619 0.00 0.00 0.00 4.26
53 54 3.819902 ACTACCTAATACTACGCAGGCTC 59.180 47.826 0.00 0.00 0.00 4.70
54 55 3.830121 ACTACCTAATACTACGCAGGCT 58.170 45.455 0.00 0.00 0.00 4.58
55 56 4.296690 CAACTACCTAATACTACGCAGGC 58.703 47.826 0.00 0.00 0.00 4.85
56 57 4.340381 ACCAACTACCTAATACTACGCAGG 59.660 45.833 0.00 0.00 0.00 4.85
57 58 5.066893 TGACCAACTACCTAATACTACGCAG 59.933 44.000 0.00 0.00 0.00 5.18
58 59 4.949238 TGACCAACTACCTAATACTACGCA 59.051 41.667 0.00 0.00 0.00 5.24
59 60 5.505173 TGACCAACTACCTAATACTACGC 57.495 43.478 0.00 0.00 0.00 4.42
60 61 8.937634 AATTTGACCAACTACCTAATACTACG 57.062 34.615 0.00 0.00 0.00 3.51
69 70 9.416284 TCTTCTTAAAAATTTGACCAACTACCT 57.584 29.630 0.00 0.00 0.00 3.08
129 130 1.111277 AAGCACCCAACCTGTGAAAC 58.889 50.000 0.00 0.00 35.74 2.78
130 131 1.110442 CAAGCACCCAACCTGTGAAA 58.890 50.000 0.00 0.00 35.74 2.69
131 132 1.391157 GCAAGCACCCAACCTGTGAA 61.391 55.000 0.00 0.00 35.74 3.18
132 133 1.827789 GCAAGCACCCAACCTGTGA 60.828 57.895 0.00 0.00 35.74 3.58
133 134 1.674764 TTGCAAGCACCCAACCTGTG 61.675 55.000 0.00 0.00 36.79 3.66
134 135 0.975040 TTTGCAAGCACCCAACCTGT 60.975 50.000 0.00 0.00 0.00 4.00
135 136 0.177604 TTTTGCAAGCACCCAACCTG 59.822 50.000 0.00 0.00 0.00 4.00
136 137 0.177836 GTTTTGCAAGCACCCAACCT 59.822 50.000 0.00 0.00 0.00 3.50
137 138 0.177836 AGTTTTGCAAGCACCCAACC 59.822 50.000 0.00 0.00 0.00 3.77
138 139 1.289276 CAGTTTTGCAAGCACCCAAC 58.711 50.000 0.00 0.00 0.00 3.77
139 140 0.177604 CCAGTTTTGCAAGCACCCAA 59.822 50.000 0.00 0.00 0.00 4.12
140 141 0.685785 TCCAGTTTTGCAAGCACCCA 60.686 50.000 0.00 0.00 0.00 4.51
141 142 0.249447 GTCCAGTTTTGCAAGCACCC 60.249 55.000 0.00 0.00 0.00 4.61
142 143 0.459489 TGTCCAGTTTTGCAAGCACC 59.541 50.000 0.00 0.00 0.00 5.01
143 144 1.559831 GTGTCCAGTTTTGCAAGCAC 58.440 50.000 0.00 0.61 0.00 4.40
144 145 0.100325 CGTGTCCAGTTTTGCAAGCA 59.900 50.000 0.00 0.00 0.00 3.91
145 146 0.380378 TCGTGTCCAGTTTTGCAAGC 59.620 50.000 0.00 0.00 0.00 4.01
146 147 1.939934 TCTCGTGTCCAGTTTTGCAAG 59.060 47.619 0.00 0.00 0.00 4.01
147 148 1.939934 CTCTCGTGTCCAGTTTTGCAA 59.060 47.619 0.00 0.00 0.00 4.08
362 365 9.346515 ACCCATATATATTCTACTTGCCCTAAA 57.653 33.333 0.00 0.00 0.00 1.85
363 366 8.768397 CACCCATATATATTCTACTTGCCCTAA 58.232 37.037 0.00 0.00 0.00 2.69
364 367 7.904564 ACACCCATATATATTCTACTTGCCCTA 59.095 37.037 0.00 0.00 0.00 3.53
365 368 6.735704 ACACCCATATATATTCTACTTGCCCT 59.264 38.462 0.00 0.00 0.00 5.19
366 369 6.823689 CACACCCATATATATTCTACTTGCCC 59.176 42.308 0.00 0.00 0.00 5.36
367 370 7.394816 ACACACCCATATATATTCTACTTGCC 58.605 38.462 0.00 0.00 0.00 4.52
368 371 8.314751 AGACACACCCATATATATTCTACTTGC 58.685 37.037 0.00 0.00 0.00 4.01
371 374 9.702253 CCTAGACACACCCATATATATTCTACT 57.298 37.037 0.00 0.00 0.00 2.57
372 375 8.915036 CCCTAGACACACCCATATATATTCTAC 58.085 40.741 0.00 0.00 0.00 2.59
373 376 7.563924 GCCCTAGACACACCCATATATATTCTA 59.436 40.741 0.00 0.00 0.00 2.10
374 377 6.384305 GCCCTAGACACACCCATATATATTCT 59.616 42.308 0.00 0.00 0.00 2.40
375 378 6.156256 TGCCCTAGACACACCCATATATATTC 59.844 42.308 0.00 0.00 0.00 1.75
376 379 6.029431 TGCCCTAGACACACCCATATATATT 58.971 40.000 0.00 0.00 0.00 1.28
377 380 5.425539 GTGCCCTAGACACACCCATATATAT 59.574 44.000 10.07 0.00 37.96 0.86
378 381 4.775780 GTGCCCTAGACACACCCATATATA 59.224 45.833 10.07 0.00 37.96 0.86
379 382 3.583086 GTGCCCTAGACACACCCATATAT 59.417 47.826 10.07 0.00 37.96 0.86
380 383 2.969950 GTGCCCTAGACACACCCATATA 59.030 50.000 10.07 0.00 37.96 0.86
381 384 1.768870 GTGCCCTAGACACACCCATAT 59.231 52.381 10.07 0.00 37.96 1.78
382 385 1.200519 GTGCCCTAGACACACCCATA 58.799 55.000 10.07 0.00 37.96 2.74
383 386 0.840288 TGTGCCCTAGACACACCCAT 60.840 55.000 12.81 0.00 42.88 4.00
384 387 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
385 388 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
389 392 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
401 404 5.641209 GCAATAACTAGGGCACATCTAGATG 59.359 44.000 27.63 27.63 44.15 2.90
402 405 5.307976 TGCAATAACTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 38.02 1.98
403 406 4.653801 TGCAATAACTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 38.02 2.43
404 407 4.960938 TGCAATAACTAGGGCACATCTAG 58.039 43.478 0.00 0.00 39.88 2.43
406 409 3.931907 TGCAATAACTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
411 414 3.931907 AGATGTGCAATAACTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
412 415 5.237344 CACTTAGATGTGCAATAACTAGGGC 59.763 44.000 0.00 0.00 0.00 5.19
413 416 6.582636 TCACTTAGATGTGCAATAACTAGGG 58.417 40.000 0.00 0.00 37.81 3.53
414 417 8.554528 CATTCACTTAGATGTGCAATAACTAGG 58.445 37.037 0.00 0.00 37.81 3.02
415 418 9.317936 TCATTCACTTAGATGTGCAATAACTAG 57.682 33.333 0.00 0.00 37.81 2.57
416 419 9.665719 TTCATTCACTTAGATGTGCAATAACTA 57.334 29.630 0.00 0.00 37.81 2.24
417 420 8.565896 TTCATTCACTTAGATGTGCAATAACT 57.434 30.769 0.00 0.00 37.81 2.24
418 421 9.443283 GATTCATTCACTTAGATGTGCAATAAC 57.557 33.333 0.00 0.00 37.81 1.89
419 422 9.176460 TGATTCATTCACTTAGATGTGCAATAA 57.824 29.630 0.00 0.00 37.81 1.40
420 423 8.735692 TGATTCATTCACTTAGATGTGCAATA 57.264 30.769 0.00 0.00 37.81 1.90
421 424 7.634671 TGATTCATTCACTTAGATGTGCAAT 57.365 32.000 0.00 0.00 37.81 3.56
422 425 7.451501 TTGATTCATTCACTTAGATGTGCAA 57.548 32.000 0.00 0.00 37.81 4.08
423 426 7.040548 TGTTTGATTCATTCACTTAGATGTGCA 60.041 33.333 0.00 0.00 37.81 4.57
424 427 7.307694 TGTTTGATTCATTCACTTAGATGTGC 58.692 34.615 0.00 0.00 37.81 4.57
502 505 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
503 506 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
504 507 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
505 508 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
506 509 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
507 510 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
508 511 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
509 512 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
510 513 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
514 517 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
515 518 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
516 519 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
517 520 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
518 521 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
519 522 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
527 530 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
528 531 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
574 577 9.232882 TGTACCCCTCAAAGAAAATACCTATAT 57.767 33.333 0.00 0.00 0.00 0.86
575 578 8.626917 TGTACCCCTCAAAGAAAATACCTATA 57.373 34.615 0.00 0.00 0.00 1.31
576 579 7.519347 TGTACCCCTCAAAGAAAATACCTAT 57.481 36.000 0.00 0.00 0.00 2.57
577 580 6.956102 TGTACCCCTCAAAGAAAATACCTA 57.044 37.500 0.00 0.00 0.00 3.08
578 581 5.853572 TGTACCCCTCAAAGAAAATACCT 57.146 39.130 0.00 0.00 0.00 3.08
579 582 8.218488 AGATATGTACCCCTCAAAGAAAATACC 58.782 37.037 0.00 0.00 0.00 2.73
580 583 9.628500 AAGATATGTACCCCTCAAAGAAAATAC 57.372 33.333 0.00 0.00 0.00 1.89
581 584 9.627123 CAAGATATGTACCCCTCAAAGAAAATA 57.373 33.333 0.00 0.00 0.00 1.40
582 585 8.116026 ACAAGATATGTACCCCTCAAAGAAAAT 58.884 33.333 0.00 0.00 41.63 1.82
583 586 7.466804 ACAAGATATGTACCCCTCAAAGAAAA 58.533 34.615 0.00 0.00 41.63 2.29
584 587 7.027874 ACAAGATATGTACCCCTCAAAGAAA 57.972 36.000 0.00 0.00 41.63 2.52
585 588 6.636454 ACAAGATATGTACCCCTCAAAGAA 57.364 37.500 0.00 0.00 41.63 2.52
586 589 6.636454 AACAAGATATGTACCCCTCAAAGA 57.364 37.500 0.00 0.00 42.99 2.52
587 590 7.703058 AAAACAAGATATGTACCCCTCAAAG 57.297 36.000 0.00 0.00 42.99 2.77
615 618 9.905713 AAATCTAGATACATACCTTTTGCTCAA 57.094 29.630 5.46 0.00 0.00 3.02
636 639 8.970813 ACCTCCCCCTCAAAAATATATAAATCT 58.029 33.333 0.00 0.00 0.00 2.40
640 643 9.189750 ACATACCTCCCCCTCAAAAATATATAA 57.810 33.333 0.00 0.00 0.00 0.98
641 644 8.766492 ACATACCTCCCCCTCAAAAATATATA 57.234 34.615 0.00 0.00 0.00 0.86
642 645 7.663501 ACATACCTCCCCCTCAAAAATATAT 57.336 36.000 0.00 0.00 0.00 0.86
643 646 8.766492 ATACATACCTCCCCCTCAAAAATATA 57.234 34.615 0.00 0.00 0.00 0.86
644 647 7.257419 GGATACATACCTCCCCCTCAAAAATAT 60.257 40.741 0.00 0.00 0.00 1.28
645 648 6.045106 GGATACATACCTCCCCCTCAAAAATA 59.955 42.308 0.00 0.00 0.00 1.40
646 649 5.162980 GGATACATACCTCCCCCTCAAAAAT 60.163 44.000 0.00 0.00 0.00 1.82
647 650 4.167307 GGATACATACCTCCCCCTCAAAAA 59.833 45.833 0.00 0.00 0.00 1.94
648 651 3.720002 GGATACATACCTCCCCCTCAAAA 59.280 47.826 0.00 0.00 0.00 2.44
649 652 3.050564 AGGATACATACCTCCCCCTCAAA 60.051 47.826 0.00 0.00 41.41 2.69
650 653 2.527057 AGGATACATACCTCCCCCTCAA 59.473 50.000 0.00 0.00 41.41 3.02
651 654 2.161624 AGGATACATACCTCCCCCTCA 58.838 52.381 0.00 0.00 41.41 3.86
652 655 3.277416 AAGGATACATACCTCCCCCTC 57.723 52.381 0.00 0.00 36.67 4.30
653 656 3.745678 AAAGGATACATACCTCCCCCT 57.254 47.619 0.00 0.00 36.67 4.79
654 657 4.808767 AAAAAGGATACATACCTCCCCC 57.191 45.455 0.00 0.00 36.67 5.40
700 703 9.661563 CTATACATACCTACCTTGTCACAAAAA 57.338 33.333 0.00 0.00 0.00 1.94
701 704 9.038072 TCTATACATACCTACCTTGTCACAAAA 57.962 33.333 0.00 0.00 0.00 2.44
702 705 8.598202 TCTATACATACCTACCTTGTCACAAA 57.402 34.615 0.00 0.00 0.00 2.83
703 706 8.638873 CATCTATACATACCTACCTTGTCACAA 58.361 37.037 0.00 0.00 0.00 3.33
704 707 7.783119 ACATCTATACATACCTACCTTGTCACA 59.217 37.037 0.00 0.00 0.00 3.58
705 708 8.082852 CACATCTATACATACCTACCTTGTCAC 58.917 40.741 0.00 0.00 0.00 3.67
706 709 7.783119 ACACATCTATACATACCTACCTTGTCA 59.217 37.037 0.00 0.00 0.00 3.58
707 710 8.082852 CACACATCTATACATACCTACCTTGTC 58.917 40.741 0.00 0.00 0.00 3.18
708 711 7.563924 ACACACATCTATACATACCTACCTTGT 59.436 37.037 0.00 0.00 0.00 3.16
709 712 7.867909 CACACACATCTATACATACCTACCTTG 59.132 40.741 0.00 0.00 0.00 3.61
710 713 7.563924 ACACACACATCTATACATACCTACCTT 59.436 37.037 0.00 0.00 0.00 3.50
711 714 7.014326 CACACACACATCTATACATACCTACCT 59.986 40.741 0.00 0.00 0.00 3.08
712 715 7.145985 CACACACACATCTATACATACCTACC 58.854 42.308 0.00 0.00 0.00 3.18
713 716 7.648112 CACACACACACATCTATACATACCTAC 59.352 40.741 0.00 0.00 0.00 3.18
714 717 7.340999 ACACACACACACATCTATACATACCTA 59.659 37.037 0.00 0.00 0.00 3.08
715 718 6.154534 ACACACACACACATCTATACATACCT 59.845 38.462 0.00 0.00 0.00 3.08
716 719 6.338146 ACACACACACACATCTATACATACC 58.662 40.000 0.00 0.00 0.00 2.73
717 720 9.529325 AATACACACACACACATCTATACATAC 57.471 33.333 0.00 0.00 0.00 2.39
725 728 9.719355 TTTAGATAAATACACACACACACATCT 57.281 29.630 0.00 0.00 0.00 2.90
726 729 9.755064 GTTTAGATAAATACACACACACACATC 57.245 33.333 0.00 0.00 0.00 3.06
727 730 9.278978 TGTTTAGATAAATACACACACACACAT 57.721 29.630 0.00 0.00 0.00 3.21
728 731 8.664211 TGTTTAGATAAATACACACACACACA 57.336 30.769 0.00 0.00 0.00 3.72
729 732 7.744715 GCTGTTTAGATAAATACACACACACAC 59.255 37.037 0.00 0.00 0.00 3.82
739 742 9.109393 TGGATTGACAGCTGTTTAGATAAATAC 57.891 33.333 22.65 12.70 0.00 1.89
752 755 1.542492 AGGCTTTGGATTGACAGCTG 58.458 50.000 13.48 13.48 32.52 4.24
753 756 3.201708 AGATAGGCTTTGGATTGACAGCT 59.798 43.478 0.00 0.00 32.52 4.24
754 757 3.549794 AGATAGGCTTTGGATTGACAGC 58.450 45.455 0.00 0.00 0.00 4.40
755 758 5.988561 GTCTAGATAGGCTTTGGATTGACAG 59.011 44.000 0.00 0.00 0.00 3.51
756 759 5.425217 TGTCTAGATAGGCTTTGGATTGACA 59.575 40.000 0.00 0.00 0.00 3.58
757 760 5.918608 TGTCTAGATAGGCTTTGGATTGAC 58.081 41.667 0.00 0.00 0.00 3.18
758 761 6.349300 GTTGTCTAGATAGGCTTTGGATTGA 58.651 40.000 0.00 0.00 0.00 2.57
759 762 5.529060 GGTTGTCTAGATAGGCTTTGGATTG 59.471 44.000 0.00 0.00 0.00 2.67
760 763 5.191722 TGGTTGTCTAGATAGGCTTTGGATT 59.808 40.000 0.00 0.00 0.00 3.01
761 764 4.721776 TGGTTGTCTAGATAGGCTTTGGAT 59.278 41.667 0.00 0.00 0.00 3.41
762 765 4.081087 GTGGTTGTCTAGATAGGCTTTGGA 60.081 45.833 0.00 0.00 0.00 3.53
763 766 4.192317 GTGGTTGTCTAGATAGGCTTTGG 58.808 47.826 0.00 0.00 0.00 3.28
764 767 4.832248 TGTGGTTGTCTAGATAGGCTTTG 58.168 43.478 0.00 0.00 0.00 2.77
765 768 5.426833 AGATGTGGTTGTCTAGATAGGCTTT 59.573 40.000 0.00 0.00 0.00 3.51
767 770 4.551671 AGATGTGGTTGTCTAGATAGGCT 58.448 43.478 0.00 0.00 0.00 4.58
768 771 4.946478 AGATGTGGTTGTCTAGATAGGC 57.054 45.455 0.00 0.00 0.00 3.93
769 772 5.536538 TGCTAGATGTGGTTGTCTAGATAGG 59.463 44.000 12.27 0.00 44.22 2.57
770 773 6.294453 CCTGCTAGATGTGGTTGTCTAGATAG 60.294 46.154 12.27 9.21 44.22 2.08
771 774 5.536538 CCTGCTAGATGTGGTTGTCTAGATA 59.463 44.000 12.27 0.00 44.22 1.98
772 775 4.343526 CCTGCTAGATGTGGTTGTCTAGAT 59.656 45.833 12.27 0.00 44.22 1.98
773 776 3.701542 CCTGCTAGATGTGGTTGTCTAGA 59.298 47.826 12.27 0.00 44.22 2.43
774 777 3.449018 ACCTGCTAGATGTGGTTGTCTAG 59.551 47.826 0.00 5.31 44.27 2.43
776 779 2.260822 ACCTGCTAGATGTGGTTGTCT 58.739 47.619 0.00 0.00 0.00 3.41
777 780 2.770164 ACCTGCTAGATGTGGTTGTC 57.230 50.000 0.00 0.00 0.00 3.18
778 781 2.612972 CGAACCTGCTAGATGTGGTTGT 60.613 50.000 11.85 0.00 35.53 3.32
779 782 2.002586 CGAACCTGCTAGATGTGGTTG 58.997 52.381 11.85 4.12 35.53 3.77
780 783 1.066143 CCGAACCTGCTAGATGTGGTT 60.066 52.381 0.00 1.27 35.53 3.67
781 784 0.537188 CCGAACCTGCTAGATGTGGT 59.463 55.000 0.00 0.00 0.00 4.16
782 785 0.811616 GCCGAACCTGCTAGATGTGG 60.812 60.000 0.00 0.00 0.00 4.17
783 786 0.811616 GGCCGAACCTGCTAGATGTG 60.812 60.000 0.00 0.00 34.51 3.21
785 788 1.227674 GGGCCGAACCTGCTAGATG 60.228 63.158 0.00 0.00 39.10 2.90
787 790 1.271840 AATGGGCCGAACCTGCTAGA 61.272 55.000 0.00 0.00 39.10 2.43
788 791 0.815615 GAATGGGCCGAACCTGCTAG 60.816 60.000 0.00 0.00 39.10 3.42
789 792 1.223487 GAATGGGCCGAACCTGCTA 59.777 57.895 0.00 0.00 39.10 3.49
790 793 2.044946 GAATGGGCCGAACCTGCT 60.045 61.111 0.00 0.00 39.10 4.24
791 794 1.754234 ATGAATGGGCCGAACCTGC 60.754 57.895 0.00 0.00 39.10 4.85
793 796 1.076777 CCATGAATGGGCCGAACCT 60.077 57.895 0.00 0.00 44.31 3.50
794 797 3.525221 CCATGAATGGGCCGAACC 58.475 61.111 0.00 0.00 44.31 3.62
803 806 0.452987 CGCCCACTTCACCATGAATG 59.547 55.000 0.00 0.00 35.59 2.67
804 807 1.315257 GCGCCCACTTCACCATGAAT 61.315 55.000 0.00 0.00 35.59 2.57
807 810 2.048023 ATGCGCCCACTTCACCATG 61.048 57.895 4.18 0.00 0.00 3.66
808 811 2.048023 CATGCGCCCACTTCACCAT 61.048 57.895 4.18 0.00 0.00 3.55
811 814 2.419057 TTTGCATGCGCCCACTTCAC 62.419 55.000 14.09 0.00 37.32 3.18
812 815 1.534336 ATTTGCATGCGCCCACTTCA 61.534 50.000 14.09 0.00 37.32 3.02
813 816 0.803380 GATTTGCATGCGCCCACTTC 60.803 55.000 14.09 0.00 37.32 3.01
814 817 1.216178 GATTTGCATGCGCCCACTT 59.784 52.632 14.09 0.00 37.32 3.16
815 818 1.324740 ATGATTTGCATGCGCCCACT 61.325 50.000 14.09 0.00 35.42 4.00
816 819 1.142314 ATGATTTGCATGCGCCCAC 59.858 52.632 14.09 4.09 35.42 4.61
817 820 3.618652 ATGATTTGCATGCGCCCA 58.381 50.000 14.09 8.67 35.42 5.36
827 830 9.841880 CCATCTTAGATCTTATTGCATGATTTG 57.158 33.333 0.00 0.00 0.00 2.32
828 831 9.021807 CCCATCTTAGATCTTATTGCATGATTT 57.978 33.333 0.00 0.00 0.00 2.17
829 832 8.388589 TCCCATCTTAGATCTTATTGCATGATT 58.611 33.333 0.00 0.00 0.00 2.57
831 834 7.320384 TCCCATCTTAGATCTTATTGCATGA 57.680 36.000 0.00 0.00 0.00 3.07
832 835 7.827729 TGATCCCATCTTAGATCTTATTGCATG 59.172 37.037 0.00 0.00 39.72 4.06
833 836 7.925622 TGATCCCATCTTAGATCTTATTGCAT 58.074 34.615 0.00 0.00 39.72 3.96
834 837 7.320384 TGATCCCATCTTAGATCTTATTGCA 57.680 36.000 0.00 0.00 39.72 4.08
835 838 7.882271 ACTTGATCCCATCTTAGATCTTATTGC 59.118 37.037 0.00 0.00 39.72 3.56
836 839 9.434420 GACTTGATCCCATCTTAGATCTTATTG 57.566 37.037 0.00 0.00 39.72 1.90
837 840 9.163894 TGACTTGATCCCATCTTAGATCTTATT 57.836 33.333 0.00 0.00 39.72 1.40
869 872 2.094182 TGTTGGAGCTAACGACCTGATC 60.094 50.000 5.96 0.00 33.28 2.92
896 904 3.422417 TCTTGCGGAGAGATTAACGAG 57.578 47.619 0.00 0.00 0.00 4.18
931 939 9.057089 CACCTGGTAGTTGGATAAAGATTAATC 57.943 37.037 7.41 7.41 0.00 1.75
932 940 8.778059 TCACCTGGTAGTTGGATAAAGATTAAT 58.222 33.333 0.00 0.00 0.00 1.40
933 941 8.044908 GTCACCTGGTAGTTGGATAAAGATTAA 58.955 37.037 0.00 0.00 0.00 1.40
939 947 3.618019 GCGTCACCTGGTAGTTGGATAAA 60.618 47.826 0.00 0.00 0.00 1.40
973 981 2.936032 AGGAGGTGGAAGGGTGCC 60.936 66.667 0.00 0.00 0.00 5.01
1049 1678 1.730547 GCGCTGCACCATTGTTGAC 60.731 57.895 0.00 0.00 0.00 3.18
1538 2334 1.911766 GTCCTGGTCGAGGTCCCAA 60.912 63.158 0.26 0.00 43.37 4.12
1817 2613 1.511305 CTGGTACGCCGAGTCACAT 59.489 57.895 0.00 0.00 37.67 3.21
1820 2616 2.282674 ACCTGGTACGCCGAGTCA 60.283 61.111 0.00 0.00 37.67 3.41
1970 2766 2.347114 CACTCCATGCCGGTGTCA 59.653 61.111 1.90 0.00 39.53 3.58
2080 2888 8.694975 ATCAGATACGTATGCATAATCAAGAC 57.305 34.615 13.97 0.00 0.00 3.01
2088 2914 6.127647 TGCATCAGATCAGATACGTATGCATA 60.128 38.462 13.97 1.16 42.39 3.14
2116 2949 8.240682 CGGAACCAAAATATACATGACAGAAAA 58.759 33.333 0.00 0.00 0.00 2.29
2124 2957 6.811170 AGCAAAACGGAACCAAAATATACATG 59.189 34.615 0.00 0.00 0.00 3.21
2125 2958 6.930731 AGCAAAACGGAACCAAAATATACAT 58.069 32.000 0.00 0.00 0.00 2.29
2141 2974 4.668576 TCTAGCTGAATTGAGCAAAACG 57.331 40.909 19.35 2.63 41.83 3.60
2294 3236 9.167311 CTTACAGTTAGAAAAGATACCTTGCAT 57.833 33.333 0.00 0.00 31.91 3.96
2327 3280 5.881923 AGTTTCAGTACCTGTTTCCTGTA 57.118 39.130 0.00 0.00 32.61 2.74
2339 3295 6.654161 TGACAGTAGGAGACTAGTTTCAGTAC 59.346 42.308 14.78 13.94 44.26 2.73
2417 3395 8.847444 ATCACAAAGAATTCGCATAATCTTTC 57.153 30.769 0.00 0.00 39.43 2.62
2453 3495 7.306399 GCAACATGCTGCAAGATTACAATAATC 60.306 37.037 16.08 1.07 42.17 1.75
2470 3512 4.630940 CGGGAAATAAAAATGCAACATGCT 59.369 37.500 3.78 0.00 45.31 3.79
2515 3699 6.267070 ACACAACGTTAGTTAACCAAATTGG 58.733 36.000 11.02 11.02 40.32 3.16
2520 3704 7.983307 ACAATAACACAACGTTAGTTAACCAA 58.017 30.769 21.76 8.04 43.26 3.67
2619 3928 0.242825 TGTTGAACGCCGTCTCTAGG 59.757 55.000 0.00 0.00 0.00 3.02
2725 4372 2.032860 GCTCCTAGCATGCCGGAGAA 62.033 60.000 38.18 16.59 45.67 2.87
2909 4562 7.015584 TGAGTAGCTGCAAGAATAATGGATAGA 59.984 37.037 4.12 0.00 34.07 1.98
2911 4564 7.066307 TGAGTAGCTGCAAGAATAATGGATA 57.934 36.000 4.12 0.00 34.07 2.59
2934 4587 8.875803 ACACTGCATTGCAAAGATAAATAATTG 58.124 29.630 13.18 0.00 38.41 2.32
3030 4690 2.969628 ATGCCTACTATATCGCCTGC 57.030 50.000 0.00 0.00 0.00 4.85
3049 4709 8.044908 GTCTTCCACTTTATCCCTGTTGTAATA 58.955 37.037 0.00 0.00 0.00 0.98
3068 4728 0.035317 AACAGCGCTGATGTCTTCCA 59.965 50.000 42.03 0.00 27.93 3.53
3113 4773 1.450312 CGGGATGGTGCTTCTGGAC 60.450 63.158 0.00 0.00 0.00 4.02
3187 4865 6.064717 AGTTTGAAGAGCATAAACCTCAACT 58.935 36.000 0.00 0.00 35.48 3.16
3259 4979 7.864882 TCTGCAGATCGACAATCTAGAAATTAG 59.135 37.037 13.74 0.00 43.13 1.73
3272 4992 2.159184 GGATGTTCTCTGCAGATCGACA 60.159 50.000 18.63 20.55 0.00 4.35
3293 5013 2.146342 CAAGCCCAGAACTGTACACTG 58.854 52.381 5.24 5.24 0.00 3.66
3294 5014 1.768870 ACAAGCCCAGAACTGTACACT 59.231 47.619 0.00 0.00 0.00 3.55
3295 5015 1.873591 CACAAGCCCAGAACTGTACAC 59.126 52.381 0.00 0.00 0.00 2.90
3296 5016 1.488812 ACACAAGCCCAGAACTGTACA 59.511 47.619 0.00 0.00 0.00 2.90
3302 5030 1.523758 CAGGTACACAAGCCCAGAAC 58.476 55.000 0.00 0.00 0.00 3.01
3412 5990 6.886178 TTCTGAATAAAGCCTAGTTACCCT 57.114 37.500 0.00 0.00 0.00 4.34
3413 5991 7.773690 TGATTTCTGAATAAAGCCTAGTTACCC 59.226 37.037 0.00 0.00 0.00 3.69
3424 6004 8.397906 TCCGCTTGTTATGATTTCTGAATAAAG 58.602 33.333 0.00 0.00 0.00 1.85
3444 6024 4.460263 TGGATATTGCTTGTATTCCGCTT 58.540 39.130 0.00 0.00 0.00 4.68
3466 6046 1.342074 TCTGTGCTAGGTGTTCTGCT 58.658 50.000 0.00 0.00 0.00 4.24
3474 6054 1.517832 GTCGCCATCTGTGCTAGGT 59.482 57.895 0.00 0.00 0.00 3.08
3479 6059 3.127533 GTGGGTCGCCATCTGTGC 61.128 66.667 0.00 0.00 0.00 4.57
3502 6084 5.036117 TCTAGCAAAAGGAGTTGTGTCTT 57.964 39.130 0.00 0.00 0.00 3.01
3537 6121 9.988350 TTGCGATTTGAGTTTAGAGAAAATATC 57.012 29.630 0.00 0.00 0.00 1.63
3561 6145 9.088512 ACTAGTAACTTCGCTTTCATAGATTTG 57.911 33.333 0.00 0.00 0.00 2.32
3628 6212 4.524328 CACAAACATAAGGAAGGAGGCTTT 59.476 41.667 0.00 0.00 0.00 3.51
3633 6217 4.389077 GTCGTCACAAACATAAGGAAGGAG 59.611 45.833 0.00 0.00 0.00 3.69
3634 6218 4.312443 GTCGTCACAAACATAAGGAAGGA 58.688 43.478 0.00 0.00 0.00 3.36
3635 6219 3.435671 GGTCGTCACAAACATAAGGAAGG 59.564 47.826 0.00 0.00 0.00 3.46
3636 6220 4.315803 AGGTCGTCACAAACATAAGGAAG 58.684 43.478 0.00 0.00 0.00 3.46
3637 6221 4.312443 GAGGTCGTCACAAACATAAGGAA 58.688 43.478 0.00 0.00 0.00 3.36
3638 6222 3.613193 CGAGGTCGTCACAAACATAAGGA 60.613 47.826 0.00 0.00 34.11 3.36
3659 6247 4.069232 TTGCCTCGGACTGCCTCG 62.069 66.667 0.00 0.00 0.00 4.63
3681 6269 8.356657 ACACAAGATTTGAACATTCGGAATTAA 58.643 29.630 0.00 0.00 0.00 1.40
3718 6306 3.437795 GCATGCTTGCTGCGAGGT 61.438 61.111 18.18 0.00 45.77 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.