Multiple sequence alignment - TraesCS3A01G526500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G526500 | chr3A | 100.000 | 3847 | 0 | 0 | 1 | 3847 | 740080125 | 740076279 | 0.000000e+00 | 7105.0 |
1 | TraesCS3A01G526500 | chr3A | 91.819 | 1039 | 74 | 6 | 1054 | 2088 | 739991574 | 739990543 | 0.000000e+00 | 1437.0 |
2 | TraesCS3A01G526500 | chr3A | 90.149 | 1076 | 90 | 13 | 960 | 2024 | 744195572 | 744194502 | 0.000000e+00 | 1386.0 |
3 | TraesCS3A01G526500 | chr3A | 90.084 | 1069 | 92 | 11 | 960 | 2018 | 744085813 | 744084749 | 0.000000e+00 | 1375.0 |
4 | TraesCS3A01G526500 | chr3A | 89.870 | 1076 | 94 | 12 | 960 | 2024 | 744216638 | 744215567 | 0.000000e+00 | 1369.0 |
5 | TraesCS3A01G526500 | chr3A | 89.212 | 241 | 26 | 0 | 3585 | 3825 | 649017917 | 649017677 | 6.250000e-78 | 302.0 |
6 | TraesCS3A01G526500 | chr3D | 92.000 | 2325 | 135 | 20 | 847 | 3124 | 607667696 | 607665376 | 0.000000e+00 | 3216.0 |
7 | TraesCS3A01G526500 | chr3D | 89.736 | 1062 | 97 | 11 | 960 | 2015 | 610166085 | 610167140 | 0.000000e+00 | 1347.0 |
8 | TraesCS3A01G526500 | chr3D | 90.669 | 643 | 34 | 17 | 3198 | 3828 | 607665321 | 607664693 | 0.000000e+00 | 832.0 |
9 | TraesCS3A01G526500 | chr3D | 87.629 | 194 | 13 | 6 | 149 | 338 | 24167956 | 24168142 | 8.370000e-52 | 215.0 |
10 | TraesCS3A01G526500 | chr3B | 94.595 | 1258 | 55 | 7 | 839 | 2083 | 817353838 | 817352581 | 0.000000e+00 | 1934.0 |
11 | TraesCS3A01G526500 | chr3B | 90.344 | 1046 | 92 | 8 | 982 | 2026 | 821978319 | 821979356 | 0.000000e+00 | 1363.0 |
12 | TraesCS3A01G526500 | chr3B | 91.104 | 978 | 80 | 3 | 1054 | 2024 | 821858263 | 821857286 | 0.000000e+00 | 1317.0 |
13 | TraesCS3A01G526500 | chr3B | 85.253 | 990 | 66 | 31 | 2250 | 3195 | 817352299 | 817351346 | 0.000000e+00 | 946.0 |
14 | TraesCS3A01G526500 | chr3B | 89.406 | 623 | 40 | 13 | 3218 | 3828 | 817350429 | 817349821 | 0.000000e+00 | 761.0 |
15 | TraesCS3A01G526500 | chr3B | 88.083 | 193 | 13 | 5 | 149 | 338 | 201523156 | 201523341 | 1.800000e-53 | 220.0 |
16 | TraesCS3A01G526500 | chr3B | 88.649 | 185 | 11 | 5 | 3218 | 3394 | 817351281 | 817351099 | 2.330000e-52 | 217.0 |
17 | TraesCS3A01G526500 | chr1B | 90.644 | 962 | 90 | 0 | 1057 | 2018 | 622181020 | 622180059 | 0.000000e+00 | 1279.0 |
18 | TraesCS3A01G526500 | chr1A | 90.363 | 965 | 87 | 3 | 1051 | 2015 | 547275654 | 547276612 | 0.000000e+00 | 1262.0 |
19 | TraesCS3A01G526500 | chr1A | 95.122 | 205 | 7 | 3 | 377 | 579 | 137854576 | 137854373 | 1.720000e-83 | 320.0 |
20 | TraesCS3A01G526500 | chr1A | 97.340 | 188 | 5 | 0 | 386 | 573 | 390635956 | 390635769 | 1.720000e-83 | 320.0 |
21 | TraesCS3A01G526500 | chr1A | 90.506 | 158 | 15 | 0 | 2552 | 2709 | 547277233 | 547277390 | 3.890000e-50 | 209.0 |
22 | TraesCS3A01G526500 | chr7D | 88.384 | 396 | 38 | 6 | 3407 | 3799 | 481831969 | 481831579 | 1.620000e-128 | 470.0 |
23 | TraesCS3A01G526500 | chr2A | 98.020 | 202 | 4 | 0 | 378 | 579 | 278996249 | 278996450 | 6.110000e-93 | 351.0 |
24 | TraesCS3A01G526500 | chr4A | 98.925 | 186 | 2 | 0 | 386 | 571 | 519575674 | 519575489 | 2.210000e-87 | 333.0 |
25 | TraesCS3A01G526500 | chr7B | 85.577 | 312 | 37 | 6 | 3492 | 3801 | 507230886 | 507230581 | 1.720000e-83 | 320.0 |
26 | TraesCS3A01G526500 | chr7B | 85.514 | 214 | 17 | 8 | 149 | 358 | 559141467 | 559141670 | 1.080000e-50 | 211.0 |
27 | TraesCS3A01G526500 | chr7B | 100.000 | 82 | 0 | 0 | 1 | 82 | 54069696 | 54069777 | 6.660000e-33 | 152.0 |
28 | TraesCS3A01G526500 | chr6A | 97.354 | 189 | 4 | 1 | 381 | 569 | 273584244 | 273584431 | 1.720000e-83 | 320.0 |
29 | TraesCS3A01G526500 | chr6A | 96.825 | 189 | 6 | 0 | 384 | 572 | 21147641 | 21147829 | 2.230000e-82 | 316.0 |
30 | TraesCS3A01G526500 | chr1D | 94.581 | 203 | 11 | 0 | 376 | 578 | 314506181 | 314506383 | 8.020000e-82 | 315.0 |
31 | TraesCS3A01G526500 | chr1D | 89.595 | 173 | 16 | 2 | 1112 | 1283 | 25957638 | 25957467 | 6.470000e-53 | 219.0 |
32 | TraesCS3A01G526500 | chr1D | 90.798 | 163 | 15 | 0 | 2552 | 2714 | 452348400 | 452348562 | 6.470000e-53 | 219.0 |
33 | TraesCS3A01G526500 | chr1D | 87.565 | 193 | 14 | 5 | 149 | 338 | 254522215 | 254522400 | 8.370000e-52 | 215.0 |
34 | TraesCS3A01G526500 | chr7A | 95.050 | 202 | 5 | 5 | 380 | 579 | 162776111 | 162776309 | 2.890000e-81 | 313.0 |
35 | TraesCS3A01G526500 | chr7A | 92.558 | 215 | 14 | 2 | 363 | 577 | 690534282 | 690534494 | 1.340000e-79 | 307.0 |
36 | TraesCS3A01G526500 | chr7A | 87.821 | 156 | 19 | 0 | 2555 | 2710 | 721585866 | 721585711 | 2.360000e-42 | 183.0 |
37 | TraesCS3A01G526500 | chr7A | 87.821 | 156 | 19 | 0 | 2555 | 2710 | 721660520 | 721660365 | 2.360000e-42 | 183.0 |
38 | TraesCS3A01G526500 | chrUn | 87.192 | 203 | 14 | 6 | 149 | 348 | 93413487 | 93413294 | 1.800000e-53 | 220.0 |
39 | TraesCS3A01G526500 | chrUn | 87.255 | 204 | 13 | 7 | 149 | 348 | 93415856 | 93415662 | 1.800000e-53 | 220.0 |
40 | TraesCS3A01G526500 | chrUn | 100.000 | 82 | 0 | 0 | 1 | 82 | 77300840 | 77300759 | 6.660000e-33 | 152.0 |
41 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 86514323 | 86514242 | 3.100000e-31 | 147.0 |
42 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 170988474 | 170988393 | 3.100000e-31 | 147.0 |
43 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 171050244 | 171050325 | 3.100000e-31 | 147.0 |
44 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 189398999 | 189399080 | 3.100000e-31 | 147.0 |
45 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 264057980 | 264057899 | 3.100000e-31 | 147.0 |
46 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 266527913 | 266527832 | 3.100000e-31 | 147.0 |
47 | TraesCS3A01G526500 | chrUn | 98.780 | 82 | 1 | 0 | 1 | 82 | 365914808 | 365914889 | 3.100000e-31 | 147.0 |
48 | TraesCS3A01G526500 | chrUn | 97.872 | 47 | 1 | 0 | 1237 | 1283 | 154747522 | 154747568 | 8.860000e-12 | 82.4 |
49 | TraesCS3A01G526500 | chr5D | 88.083 | 193 | 13 | 5 | 149 | 338 | 560880958 | 560881143 | 1.800000e-53 | 220.0 |
50 | TraesCS3A01G526500 | chr5D | 87.565 | 193 | 14 | 5 | 149 | 338 | 503214364 | 503214549 | 8.370000e-52 | 215.0 |
51 | TraesCS3A01G526500 | chr2D | 87.192 | 203 | 14 | 6 | 149 | 348 | 635586408 | 635586215 | 1.800000e-53 | 220.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G526500 | chr3A | 740076279 | 740080125 | 3846 | True | 7105.0 | 7105 | 100.00000 | 1 | 3847 | 1 | chr3A.!!$R3 | 3846 |
1 | TraesCS3A01G526500 | chr3A | 739990543 | 739991574 | 1031 | True | 1437.0 | 1437 | 91.81900 | 1054 | 2088 | 1 | chr3A.!!$R2 | 1034 |
2 | TraesCS3A01G526500 | chr3A | 744194502 | 744195572 | 1070 | True | 1386.0 | 1386 | 90.14900 | 960 | 2024 | 1 | chr3A.!!$R5 | 1064 |
3 | TraesCS3A01G526500 | chr3A | 744084749 | 744085813 | 1064 | True | 1375.0 | 1375 | 90.08400 | 960 | 2018 | 1 | chr3A.!!$R4 | 1058 |
4 | TraesCS3A01G526500 | chr3A | 744215567 | 744216638 | 1071 | True | 1369.0 | 1369 | 89.87000 | 960 | 2024 | 1 | chr3A.!!$R6 | 1064 |
5 | TraesCS3A01G526500 | chr3D | 607664693 | 607667696 | 3003 | True | 2024.0 | 3216 | 91.33450 | 847 | 3828 | 2 | chr3D.!!$R1 | 2981 |
6 | TraesCS3A01G526500 | chr3D | 610166085 | 610167140 | 1055 | False | 1347.0 | 1347 | 89.73600 | 960 | 2015 | 1 | chr3D.!!$F2 | 1055 |
7 | TraesCS3A01G526500 | chr3B | 821978319 | 821979356 | 1037 | False | 1363.0 | 1363 | 90.34400 | 982 | 2026 | 1 | chr3B.!!$F2 | 1044 |
8 | TraesCS3A01G526500 | chr3B | 821857286 | 821858263 | 977 | True | 1317.0 | 1317 | 91.10400 | 1054 | 2024 | 1 | chr3B.!!$R1 | 970 |
9 | TraesCS3A01G526500 | chr3B | 817349821 | 817353838 | 4017 | True | 964.5 | 1934 | 89.47575 | 839 | 3828 | 4 | chr3B.!!$R2 | 2989 |
10 | TraesCS3A01G526500 | chr1B | 622180059 | 622181020 | 961 | True | 1279.0 | 1279 | 90.64400 | 1057 | 2018 | 1 | chr1B.!!$R1 | 961 |
11 | TraesCS3A01G526500 | chr1A | 547275654 | 547277390 | 1736 | False | 735.5 | 1262 | 90.43450 | 1051 | 2709 | 2 | chr1A.!!$F1 | 1658 |
12 | TraesCS3A01G526500 | chrUn | 93413294 | 93415856 | 2562 | True | 220.0 | 220 | 87.22350 | 149 | 348 | 2 | chrUn.!!$R6 | 199 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
147 | 148 | 0.033601 | TGTTTCACAGGTTGGGTGCT | 60.034 | 50.000 | 0.00 | 0.00 | 36.22 | 4.40 | F |
815 | 818 | 0.038890 | TTCGGCCCATTCATGGTGAA | 59.961 | 50.000 | 0.00 | 3.75 | 46.65 | 3.18 | F |
869 | 872 | 0.107508 | ATGGGATCAAGTCACGCCTG | 60.108 | 55.000 | 0.00 | 0.00 | 30.69 | 4.85 | F |
1820 | 2616 | 1.443407 | CTCGCCGGGATTCTCATGT | 59.557 | 57.895 | 2.18 | 0.00 | 0.00 | 3.21 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1817 | 2613 | 1.511305 | CTGGTACGCCGAGTCACAT | 59.489 | 57.895 | 0.00 | 0.00 | 37.67 | 3.21 | R |
2619 | 3928 | 0.242825 | TGTTGAACGCCGTCTCTAGG | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 | R |
2725 | 4372 | 2.032860 | GCTCCTAGCATGCCGGAGAA | 62.033 | 60.000 | 38.18 | 16.59 | 45.67 | 2.87 | R |
3068 | 4728 | 0.035317 | AACAGCGCTGATGTCTTCCA | 59.965 | 50.000 | 42.03 | 0.00 | 27.93 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 0.526211 | GAACAGTTCGGGCCAAATCC | 59.474 | 55.000 | 4.39 | 0.00 | 0.00 | 3.01 |
25 | 26 | 0.112412 | AACAGTTCGGGCCAAATCCT | 59.888 | 50.000 | 4.39 | 0.00 | 0.00 | 3.24 |
26 | 27 | 0.609131 | ACAGTTCGGGCCAAATCCTG | 60.609 | 55.000 | 4.39 | 6.09 | 0.00 | 3.86 |
27 | 28 | 0.322456 | CAGTTCGGGCCAAATCCTGA | 60.322 | 55.000 | 4.39 | 0.00 | 39.65 | 3.86 |
28 | 29 | 0.404040 | AGTTCGGGCCAAATCCTGAA | 59.596 | 50.000 | 4.39 | 0.23 | 46.32 | 3.02 |
29 | 30 | 3.264574 | TTCGGGCCAAATCCTGAAG | 57.735 | 52.632 | 4.39 | 0.00 | 44.32 | 3.02 |
30 | 31 | 0.695924 | TTCGGGCCAAATCCTGAAGA | 59.304 | 50.000 | 4.39 | 0.00 | 44.32 | 2.87 |
31 | 32 | 0.695924 | TCGGGCCAAATCCTGAAGAA | 59.304 | 50.000 | 4.39 | 0.00 | 38.51 | 2.52 |
32 | 33 | 1.074727 | TCGGGCCAAATCCTGAAGAAA | 59.925 | 47.619 | 4.39 | 0.00 | 38.51 | 2.52 |
33 | 34 | 1.474077 | CGGGCCAAATCCTGAAGAAAG | 59.526 | 52.381 | 4.39 | 0.00 | 34.34 | 2.62 |
34 | 35 | 1.205655 | GGGCCAAATCCTGAAGAAAGC | 59.794 | 52.381 | 4.39 | 0.00 | 0.00 | 3.51 |
35 | 36 | 2.174360 | GGCCAAATCCTGAAGAAAGCT | 58.826 | 47.619 | 0.00 | 0.00 | 0.00 | 3.74 |
36 | 37 | 2.165234 | GGCCAAATCCTGAAGAAAGCTC | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
37 | 38 | 2.821969 | GCCAAATCCTGAAGAAAGCTCA | 59.178 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
38 | 39 | 3.256631 | GCCAAATCCTGAAGAAAGCTCAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
39 | 40 | 4.262164 | GCCAAATCCTGAAGAAAGCTCAAA | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
40 | 41 | 5.739935 | GCCAAATCCTGAAGAAAGCTCAAAA | 60.740 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
41 | 42 | 5.924825 | CCAAATCCTGAAGAAAGCTCAAAAG | 59.075 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
53 | 54 | 3.758521 | GCTCAAAAGCGTTGTTTGATG | 57.241 | 42.857 | 9.64 | 6.68 | 42.49 | 3.07 |
54 | 55 | 3.371168 | GCTCAAAAGCGTTGTTTGATGA | 58.629 | 40.909 | 9.64 | 0.00 | 42.49 | 2.92 |
55 | 56 | 3.423206 | GCTCAAAAGCGTTGTTTGATGAG | 59.577 | 43.478 | 9.64 | 5.47 | 42.49 | 2.90 |
56 | 57 | 3.371168 | TCAAAAGCGTTGTTTGATGAGC | 58.629 | 40.909 | 6.30 | 0.00 | 39.46 | 4.26 |
57 | 58 | 2.422276 | AAAGCGTTGTTTGATGAGCC | 57.578 | 45.000 | 0.00 | 0.00 | 0.00 | 4.70 |
58 | 59 | 1.609208 | AAGCGTTGTTTGATGAGCCT | 58.391 | 45.000 | 0.00 | 0.00 | 0.00 | 4.58 |
59 | 60 | 0.877071 | AGCGTTGTTTGATGAGCCTG | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
60 | 61 | 0.730494 | GCGTTGTTTGATGAGCCTGC | 60.730 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
61 | 62 | 0.453282 | CGTTGTTTGATGAGCCTGCG | 60.453 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
62 | 63 | 0.593128 | GTTGTTTGATGAGCCTGCGT | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
63 | 64 | 1.804151 | GTTGTTTGATGAGCCTGCGTA | 59.196 | 47.619 | 0.00 | 0.00 | 0.00 | 4.42 |
64 | 65 | 1.725641 | TGTTTGATGAGCCTGCGTAG | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
65 | 66 | 1.001974 | TGTTTGATGAGCCTGCGTAGT | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
66 | 67 | 2.232696 | TGTTTGATGAGCCTGCGTAGTA | 59.767 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
67 | 68 | 3.118775 | TGTTTGATGAGCCTGCGTAGTAT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
68 | 69 | 3.819564 | TTGATGAGCCTGCGTAGTATT | 57.180 | 42.857 | 0.00 | 0.00 | 0.00 | 1.89 |
69 | 70 | 4.929819 | TTGATGAGCCTGCGTAGTATTA | 57.070 | 40.909 | 0.00 | 0.00 | 0.00 | 0.98 |
70 | 71 | 4.505313 | TGATGAGCCTGCGTAGTATTAG | 57.495 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
71 | 72 | 3.255888 | TGATGAGCCTGCGTAGTATTAGG | 59.744 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
72 | 73 | 2.662866 | TGAGCCTGCGTAGTATTAGGT | 58.337 | 47.619 | 0.00 | 0.00 | 32.85 | 3.08 |
73 | 74 | 3.824133 | TGAGCCTGCGTAGTATTAGGTA | 58.176 | 45.455 | 0.00 | 0.00 | 32.85 | 3.08 |
74 | 75 | 3.819337 | TGAGCCTGCGTAGTATTAGGTAG | 59.181 | 47.826 | 0.00 | 0.00 | 32.85 | 3.18 |
75 | 76 | 3.819902 | GAGCCTGCGTAGTATTAGGTAGT | 59.180 | 47.826 | 0.00 | 0.00 | 32.85 | 2.73 |
76 | 77 | 4.213513 | AGCCTGCGTAGTATTAGGTAGTT | 58.786 | 43.478 | 0.00 | 0.00 | 32.85 | 2.24 |
77 | 78 | 4.037684 | AGCCTGCGTAGTATTAGGTAGTTG | 59.962 | 45.833 | 0.00 | 0.00 | 32.85 | 3.16 |
78 | 79 | 4.795308 | GCCTGCGTAGTATTAGGTAGTTGG | 60.795 | 50.000 | 0.00 | 0.00 | 32.85 | 3.77 |
79 | 80 | 4.340381 | CCTGCGTAGTATTAGGTAGTTGGT | 59.660 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
80 | 81 | 5.505173 | TGCGTAGTATTAGGTAGTTGGTC | 57.495 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
81 | 82 | 4.949238 | TGCGTAGTATTAGGTAGTTGGTCA | 59.051 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
82 | 83 | 5.418524 | TGCGTAGTATTAGGTAGTTGGTCAA | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
83 | 84 | 6.071447 | TGCGTAGTATTAGGTAGTTGGTCAAA | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
84 | 85 | 6.982724 | GCGTAGTATTAGGTAGTTGGTCAAAT | 59.017 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
85 | 86 | 7.493645 | GCGTAGTATTAGGTAGTTGGTCAAATT | 59.506 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
86 | 87 | 9.374838 | CGTAGTATTAGGTAGTTGGTCAAATTT | 57.625 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
95 | 96 | 9.416284 | AGGTAGTTGGTCAAATTTTTAAGAAGA | 57.584 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
138 | 139 | 9.912634 | AGAATTGTTACAAATATGTTTCACAGG | 57.087 | 29.630 | 0.66 | 0.00 | 41.05 | 4.00 |
139 | 140 | 9.691362 | GAATTGTTACAAATATGTTTCACAGGT | 57.309 | 29.630 | 0.66 | 0.00 | 41.05 | 4.00 |
141 | 142 | 8.864069 | TTGTTACAAATATGTTTCACAGGTTG | 57.136 | 30.769 | 0.00 | 0.00 | 41.05 | 3.77 |
142 | 143 | 7.429633 | TGTTACAAATATGTTTCACAGGTTGG | 58.570 | 34.615 | 0.00 | 0.00 | 41.05 | 3.77 |
143 | 144 | 5.467035 | ACAAATATGTTTCACAGGTTGGG | 57.533 | 39.130 | 0.00 | 0.00 | 35.91 | 4.12 |
144 | 145 | 4.898861 | ACAAATATGTTTCACAGGTTGGGT | 59.101 | 37.500 | 0.00 | 0.00 | 35.91 | 4.51 |
145 | 146 | 5.221422 | ACAAATATGTTTCACAGGTTGGGTG | 60.221 | 40.000 | 0.00 | 0.00 | 35.91 | 4.61 |
146 | 147 | 1.039856 | ATGTTTCACAGGTTGGGTGC | 58.960 | 50.000 | 0.00 | 0.00 | 36.22 | 5.01 |
147 | 148 | 0.033601 | TGTTTCACAGGTTGGGTGCT | 60.034 | 50.000 | 0.00 | 0.00 | 36.22 | 4.40 |
162 | 163 | 1.559831 | GTGCTTGCAAAACTGGACAC | 58.440 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
305 | 308 | 9.952030 | AGAAAATTTTAGGGTTTTTCAACTGAA | 57.048 | 25.926 | 2.75 | 0.00 | 40.26 | 3.02 |
388 | 391 | 8.927059 | TTAGGGCAAGTAGAATATATATGGGT | 57.073 | 34.615 | 0.00 | 0.00 | 0.00 | 4.51 |
389 | 392 | 7.200434 | AGGGCAAGTAGAATATATATGGGTG | 57.800 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
390 | 393 | 6.735704 | AGGGCAAGTAGAATATATATGGGTGT | 59.264 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
391 | 394 | 6.823689 | GGGCAAGTAGAATATATATGGGTGTG | 59.176 | 42.308 | 0.00 | 0.00 | 0.00 | 3.82 |
392 | 395 | 7.394816 | GGCAAGTAGAATATATATGGGTGTGT | 58.605 | 38.462 | 0.00 | 0.00 | 0.00 | 3.72 |
393 | 396 | 7.549488 | GGCAAGTAGAATATATATGGGTGTGTC | 59.451 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
394 | 397 | 8.314751 | GCAAGTAGAATATATATGGGTGTGTCT | 58.685 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
397 | 400 | 9.702253 | AGTAGAATATATATGGGTGTGTCTAGG | 57.298 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
398 | 401 | 7.979786 | AGAATATATATGGGTGTGTCTAGGG | 57.020 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
399 | 402 | 6.384305 | AGAATATATATGGGTGTGTCTAGGGC | 59.616 | 42.308 | 0.00 | 0.00 | 0.00 | 5.19 |
400 | 403 | 2.190398 | ATATGGGTGTGTCTAGGGCA | 57.810 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
401 | 404 | 1.200519 | TATGGGTGTGTCTAGGGCAC | 58.799 | 55.000 | 10.20 | 10.20 | 37.37 | 5.01 |
402 | 405 | 0.840288 | ATGGGTGTGTCTAGGGCACA | 60.840 | 55.000 | 14.22 | 14.22 | 43.60 | 4.57 |
403 | 406 | 0.840288 | TGGGTGTGTCTAGGGCACAT | 60.840 | 55.000 | 18.92 | 0.00 | 46.66 | 3.21 |
404 | 407 | 0.107654 | GGGTGTGTCTAGGGCACATC | 60.108 | 60.000 | 18.92 | 18.25 | 46.66 | 3.06 |
405 | 408 | 0.905357 | GGTGTGTCTAGGGCACATCT | 59.095 | 55.000 | 18.92 | 0.00 | 46.66 | 2.90 |
406 | 409 | 2.108168 | GGTGTGTCTAGGGCACATCTA | 58.892 | 52.381 | 18.92 | 0.21 | 46.66 | 1.98 |
407 | 410 | 2.101582 | GGTGTGTCTAGGGCACATCTAG | 59.898 | 54.545 | 18.92 | 0.00 | 46.66 | 2.43 |
408 | 411 | 3.024547 | GTGTGTCTAGGGCACATCTAGA | 58.975 | 50.000 | 18.92 | 0.00 | 46.66 | 2.43 |
409 | 412 | 3.639094 | GTGTGTCTAGGGCACATCTAGAT | 59.361 | 47.826 | 18.92 | 0.00 | 46.66 | 1.98 |
410 | 413 | 3.638627 | TGTGTCTAGGGCACATCTAGATG | 59.361 | 47.826 | 27.63 | 27.63 | 43.25 | 2.90 |
425 | 428 | 5.215252 | TCTAGATGTGCCCTAGTTATTGC | 57.785 | 43.478 | 0.00 | 0.00 | 36.06 | 3.56 |
426 | 429 | 3.931907 | AGATGTGCCCTAGTTATTGCA | 57.068 | 42.857 | 0.00 | 0.00 | 0.00 | 4.08 |
431 | 434 | 3.931907 | TGCCCTAGTTATTGCACATCT | 57.068 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
433 | 436 | 5.366482 | TGCCCTAGTTATTGCACATCTAA | 57.634 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
434 | 437 | 5.368145 | TGCCCTAGTTATTGCACATCTAAG | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
435 | 438 | 5.104527 | TGCCCTAGTTATTGCACATCTAAGT | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
436 | 439 | 5.237344 | GCCCTAGTTATTGCACATCTAAGTG | 59.763 | 44.000 | 0.00 | 0.00 | 42.37 | 3.16 |
437 | 440 | 6.582636 | CCCTAGTTATTGCACATCTAAGTGA | 58.417 | 40.000 | 0.00 | 0.00 | 42.05 | 3.41 |
438 | 441 | 7.047891 | CCCTAGTTATTGCACATCTAAGTGAA | 58.952 | 38.462 | 0.00 | 0.00 | 42.05 | 3.18 |
439 | 442 | 7.716998 | CCCTAGTTATTGCACATCTAAGTGAAT | 59.283 | 37.037 | 0.00 | 0.00 | 42.05 | 2.57 |
440 | 443 | 8.554528 | CCTAGTTATTGCACATCTAAGTGAATG | 58.445 | 37.037 | 0.00 | 0.00 | 42.05 | 2.67 |
441 | 444 | 9.317936 | CTAGTTATTGCACATCTAAGTGAATGA | 57.682 | 33.333 | 0.00 | 0.00 | 42.05 | 2.57 |
442 | 445 | 8.565896 | AGTTATTGCACATCTAAGTGAATGAA | 57.434 | 30.769 | 0.00 | 0.00 | 42.05 | 2.57 |
443 | 446 | 9.182214 | AGTTATTGCACATCTAAGTGAATGAAT | 57.818 | 29.630 | 0.00 | 0.00 | 42.05 | 2.57 |
444 | 447 | 9.443283 | GTTATTGCACATCTAAGTGAATGAATC | 57.557 | 33.333 | 0.00 | 0.00 | 42.05 | 2.52 |
445 | 448 | 7.634671 | ATTGCACATCTAAGTGAATGAATCA | 57.365 | 32.000 | 0.00 | 0.00 | 42.05 | 2.57 |
446 | 449 | 7.451501 | TTGCACATCTAAGTGAATGAATCAA | 57.548 | 32.000 | 0.00 | 0.00 | 42.05 | 2.57 |
447 | 450 | 7.451501 | TGCACATCTAAGTGAATGAATCAAA | 57.548 | 32.000 | 0.00 | 0.00 | 42.05 | 2.69 |
448 | 451 | 7.307694 | TGCACATCTAAGTGAATGAATCAAAC | 58.692 | 34.615 | 0.00 | 0.00 | 42.05 | 2.93 |
449 | 452 | 7.040548 | TGCACATCTAAGTGAATGAATCAAACA | 60.041 | 33.333 | 0.00 | 0.00 | 42.05 | 2.83 |
450 | 453 | 7.972277 | GCACATCTAAGTGAATGAATCAAACAT | 59.028 | 33.333 | 0.00 | 0.00 | 42.05 | 2.71 |
494 | 497 | 9.442047 | AGAGAAAGAAAATATTCACACGAATCT | 57.558 | 29.630 | 0.00 | 0.00 | 41.09 | 2.40 |
528 | 531 | 9.708092 | AGATCAATGACATATGACTTAGATGTG | 57.292 | 33.333 | 10.38 | 0.00 | 41.09 | 3.21 |
529 | 532 | 7.719778 | TCAATGACATATGACTTAGATGTGC | 57.280 | 36.000 | 10.38 | 0.00 | 41.09 | 4.57 |
530 | 533 | 7.274447 | TCAATGACATATGACTTAGATGTGCA | 58.726 | 34.615 | 10.38 | 0.00 | 41.09 | 4.57 |
531 | 534 | 7.769970 | TCAATGACATATGACTTAGATGTGCAA | 59.230 | 33.333 | 10.38 | 0.00 | 41.09 | 4.08 |
532 | 535 | 8.565416 | CAATGACATATGACTTAGATGTGCAAT | 58.435 | 33.333 | 10.38 | 0.00 | 41.09 | 3.56 |
533 | 536 | 9.783081 | AATGACATATGACTTAGATGTGCAATA | 57.217 | 29.630 | 10.38 | 0.00 | 41.09 | 1.90 |
534 | 537 | 8.593492 | TGACATATGACTTAGATGTGCAATAC | 57.407 | 34.615 | 10.38 | 0.00 | 41.09 | 1.89 |
535 | 538 | 8.424133 | TGACATATGACTTAGATGTGCAATACT | 58.576 | 33.333 | 10.38 | 0.00 | 41.09 | 2.12 |
536 | 539 | 9.265901 | GACATATGACTTAGATGTGCAATACTT | 57.734 | 33.333 | 10.38 | 0.00 | 41.09 | 2.24 |
540 | 543 | 8.613060 | ATGACTTAGATGTGCAATACTTATGG | 57.387 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
541 | 544 | 6.483307 | TGACTTAGATGTGCAATACTTATGGC | 59.517 | 38.462 | 0.00 | 0.00 | 33.16 | 4.40 |
542 | 545 | 6.356556 | ACTTAGATGTGCAATACTTATGGCA | 58.643 | 36.000 | 0.00 | 0.00 | 40.19 | 4.92 |
600 | 603 | 5.853572 | AGGTATTTTCTTTGAGGGGTACA | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
601 | 604 | 6.402981 | AGGTATTTTCTTTGAGGGGTACAT | 57.597 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
602 | 605 | 7.519347 | AGGTATTTTCTTTGAGGGGTACATA | 57.481 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
603 | 606 | 8.114301 | AGGTATTTTCTTTGAGGGGTACATAT | 57.886 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
604 | 607 | 8.218488 | AGGTATTTTCTTTGAGGGGTACATATC | 58.782 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
605 | 608 | 8.218488 | GGTATTTTCTTTGAGGGGTACATATCT | 58.782 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
606 | 609 | 9.628500 | GTATTTTCTTTGAGGGGTACATATCTT | 57.372 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
607 | 610 | 7.938140 | TTTTCTTTGAGGGGTACATATCTTG | 57.062 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
608 | 611 | 6.636454 | TTCTTTGAGGGGTACATATCTTGT | 57.364 | 37.500 | 0.00 | 0.00 | 42.62 | 3.16 |
609 | 612 | 6.636454 | TCTTTGAGGGGTACATATCTTGTT | 57.364 | 37.500 | 0.00 | 0.00 | 39.87 | 2.83 |
610 | 613 | 7.027874 | TCTTTGAGGGGTACATATCTTGTTT | 57.972 | 36.000 | 0.00 | 0.00 | 39.87 | 2.83 |
611 | 614 | 7.466804 | TCTTTGAGGGGTACATATCTTGTTTT | 58.533 | 34.615 | 0.00 | 0.00 | 39.87 | 2.43 |
612 | 615 | 7.947890 | TCTTTGAGGGGTACATATCTTGTTTTT | 59.052 | 33.333 | 0.00 | 0.00 | 39.87 | 1.94 |
641 | 644 | 9.905713 | TTGAGCAAAAGGTATGTATCTAGATTT | 57.094 | 29.630 | 11.25 | 0.00 | 0.00 | 2.17 |
662 | 665 | 8.970813 | AGATTTATATATTTTTGAGGGGGAGGT | 58.029 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
666 | 669 | 7.663501 | ATATATTTTTGAGGGGGAGGTATGT | 57.336 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
667 | 670 | 8.766492 | ATATATTTTTGAGGGGGAGGTATGTA | 57.234 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
668 | 671 | 7.663501 | ATATTTTTGAGGGGGAGGTATGTAT | 57.336 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
669 | 672 | 5.382664 | TTTTTGAGGGGGAGGTATGTATC | 57.617 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
670 | 673 | 2.715763 | TGAGGGGGAGGTATGTATCC | 57.284 | 55.000 | 0.00 | 0.00 | 34.64 | 2.59 |
671 | 674 | 2.161624 | TGAGGGGGAGGTATGTATCCT | 58.838 | 52.381 | 0.00 | 0.00 | 38.09 | 3.24 |
672 | 675 | 2.527057 | TGAGGGGGAGGTATGTATCCTT | 59.473 | 50.000 | 0.00 | 0.00 | 35.20 | 3.36 |
673 | 676 | 3.050564 | TGAGGGGGAGGTATGTATCCTTT | 60.051 | 47.826 | 0.00 | 0.00 | 35.20 | 3.11 |
674 | 677 | 3.981375 | GAGGGGGAGGTATGTATCCTTTT | 59.019 | 47.826 | 0.00 | 0.00 | 35.20 | 2.27 |
675 | 678 | 4.390008 | AGGGGGAGGTATGTATCCTTTTT | 58.610 | 43.478 | 0.00 | 0.00 | 35.20 | 1.94 |
726 | 729 | 9.661563 | TTTTTGTGACAAGGTAGGTATGTATAG | 57.338 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
727 | 730 | 8.598202 | TTTGTGACAAGGTAGGTATGTATAGA | 57.402 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
728 | 731 | 8.777578 | TTGTGACAAGGTAGGTATGTATAGAT | 57.222 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
729 | 732 | 8.178313 | TGTGACAAGGTAGGTATGTATAGATG | 57.822 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
739 | 742 | 6.573434 | AGGTATGTATAGATGTGTGTGTGTG | 58.427 | 40.000 | 0.00 | 0.00 | 0.00 | 3.82 |
752 | 755 | 9.755064 | GATGTGTGTGTGTGTATTTATCTAAAC | 57.245 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
753 | 756 | 8.664211 | TGTGTGTGTGTGTATTTATCTAAACA | 57.336 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
754 | 757 | 8.769891 | TGTGTGTGTGTGTATTTATCTAAACAG | 58.230 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
755 | 758 | 7.744715 | GTGTGTGTGTGTATTTATCTAAACAGC | 59.255 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
756 | 759 | 7.659799 | TGTGTGTGTGTATTTATCTAAACAGCT | 59.340 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
757 | 760 | 7.957484 | GTGTGTGTGTATTTATCTAAACAGCTG | 59.043 | 37.037 | 13.48 | 13.48 | 0.00 | 4.24 |
758 | 761 | 7.659799 | TGTGTGTGTATTTATCTAAACAGCTGT | 59.340 | 33.333 | 15.25 | 15.25 | 0.00 | 4.40 |
759 | 762 | 8.169268 | GTGTGTGTATTTATCTAAACAGCTGTC | 58.831 | 37.037 | 21.95 | 3.16 | 0.00 | 3.51 |
760 | 763 | 7.875554 | TGTGTGTATTTATCTAAACAGCTGTCA | 59.124 | 33.333 | 21.95 | 10.41 | 0.00 | 3.58 |
761 | 764 | 8.717821 | GTGTGTATTTATCTAAACAGCTGTCAA | 58.282 | 33.333 | 21.95 | 10.39 | 0.00 | 3.18 |
762 | 765 | 9.448438 | TGTGTATTTATCTAAACAGCTGTCAAT | 57.552 | 29.630 | 21.95 | 12.19 | 0.00 | 2.57 |
763 | 766 | 9.922305 | GTGTATTTATCTAAACAGCTGTCAATC | 57.078 | 33.333 | 21.95 | 2.37 | 0.00 | 2.67 |
764 | 767 | 9.109393 | TGTATTTATCTAAACAGCTGTCAATCC | 57.891 | 33.333 | 21.95 | 2.47 | 0.00 | 3.01 |
765 | 768 | 9.109393 | GTATTTATCTAAACAGCTGTCAATCCA | 57.891 | 33.333 | 21.95 | 2.64 | 0.00 | 3.41 |
767 | 770 | 7.994425 | TTATCTAAACAGCTGTCAATCCAAA | 57.006 | 32.000 | 21.95 | 7.03 | 0.00 | 3.28 |
768 | 771 | 5.947228 | TCTAAACAGCTGTCAATCCAAAG | 57.053 | 39.130 | 21.95 | 8.78 | 0.00 | 2.77 |
769 | 772 | 3.375782 | AAACAGCTGTCAATCCAAAGC | 57.624 | 42.857 | 21.95 | 0.00 | 35.86 | 3.51 |
770 | 773 | 1.251251 | ACAGCTGTCAATCCAAAGCC | 58.749 | 50.000 | 15.25 | 0.00 | 36.28 | 4.35 |
771 | 774 | 1.202976 | ACAGCTGTCAATCCAAAGCCT | 60.203 | 47.619 | 15.25 | 0.00 | 36.28 | 4.58 |
772 | 775 | 2.040278 | ACAGCTGTCAATCCAAAGCCTA | 59.960 | 45.455 | 15.25 | 0.00 | 36.28 | 3.93 |
773 | 776 | 3.285484 | CAGCTGTCAATCCAAAGCCTAT | 58.715 | 45.455 | 5.25 | 0.00 | 36.28 | 2.57 |
774 | 777 | 3.314635 | CAGCTGTCAATCCAAAGCCTATC | 59.685 | 47.826 | 5.25 | 0.00 | 36.28 | 2.08 |
776 | 779 | 4.410228 | AGCTGTCAATCCAAAGCCTATCTA | 59.590 | 41.667 | 0.00 | 0.00 | 36.28 | 1.98 |
777 | 780 | 4.754114 | GCTGTCAATCCAAAGCCTATCTAG | 59.246 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
778 | 781 | 5.453903 | GCTGTCAATCCAAAGCCTATCTAGA | 60.454 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
779 | 782 | 5.918608 | TGTCAATCCAAAGCCTATCTAGAC | 58.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
780 | 783 | 5.425217 | TGTCAATCCAAAGCCTATCTAGACA | 59.575 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
781 | 784 | 6.070251 | TGTCAATCCAAAGCCTATCTAGACAA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
782 | 785 | 6.258947 | GTCAATCCAAAGCCTATCTAGACAAC | 59.741 | 42.308 | 0.00 | 0.00 | 0.00 | 3.32 |
783 | 786 | 4.755266 | TCCAAAGCCTATCTAGACAACC | 57.245 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
785 | 788 | 4.081087 | TCCAAAGCCTATCTAGACAACCAC | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 4.16 |
787 | 790 | 5.431765 | CAAAGCCTATCTAGACAACCACAT | 58.568 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
788 | 791 | 4.946478 | AGCCTATCTAGACAACCACATC | 57.054 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
789 | 792 | 4.551671 | AGCCTATCTAGACAACCACATCT | 58.448 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
790 | 793 | 5.706447 | AGCCTATCTAGACAACCACATCTA | 58.294 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
791 | 794 | 5.772672 | AGCCTATCTAGACAACCACATCTAG | 59.227 | 44.000 | 0.00 | 2.48 | 43.94 | 2.43 |
793 | 796 | 5.536538 | CCTATCTAGACAACCACATCTAGCA | 59.463 | 44.000 | 0.00 | 0.00 | 42.80 | 3.49 |
794 | 797 | 4.991153 | TCTAGACAACCACATCTAGCAG | 57.009 | 45.455 | 3.83 | 0.00 | 42.80 | 4.24 |
795 | 798 | 3.701542 | TCTAGACAACCACATCTAGCAGG | 59.298 | 47.826 | 3.83 | 0.00 | 42.80 | 4.85 |
798 | 801 | 3.003480 | GACAACCACATCTAGCAGGTTC | 58.997 | 50.000 | 0.00 | 0.00 | 42.15 | 3.62 |
799 | 802 | 2.002586 | CAACCACATCTAGCAGGTTCG | 58.997 | 52.381 | 0.00 | 0.00 | 42.15 | 3.95 |
801 | 804 | 0.811616 | CCACATCTAGCAGGTTCGGC | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 5.54 |
803 | 806 | 1.227674 | CATCTAGCAGGTTCGGCCC | 60.228 | 63.158 | 0.00 | 0.00 | 38.26 | 5.80 |
804 | 807 | 1.689233 | ATCTAGCAGGTTCGGCCCA | 60.689 | 57.895 | 0.00 | 0.00 | 38.26 | 5.36 |
807 | 810 | 0.815615 | CTAGCAGGTTCGGCCCATTC | 60.816 | 60.000 | 0.00 | 0.00 | 38.26 | 2.67 |
808 | 811 | 1.558167 | TAGCAGGTTCGGCCCATTCA | 61.558 | 55.000 | 0.00 | 0.00 | 38.26 | 2.57 |
812 | 815 | 1.379843 | GGTTCGGCCCATTCATGGT | 60.380 | 57.895 | 0.00 | 0.00 | 46.65 | 3.55 |
813 | 816 | 1.666209 | GGTTCGGCCCATTCATGGTG | 61.666 | 60.000 | 0.00 | 0.00 | 46.65 | 4.17 |
814 | 817 | 0.679640 | GTTCGGCCCATTCATGGTGA | 60.680 | 55.000 | 0.00 | 0.00 | 46.65 | 4.02 |
815 | 818 | 0.038890 | TTCGGCCCATTCATGGTGAA | 59.961 | 50.000 | 0.00 | 3.75 | 46.65 | 3.18 |
816 | 819 | 0.394216 | TCGGCCCATTCATGGTGAAG | 60.394 | 55.000 | 0.00 | 0.00 | 46.65 | 3.02 |
817 | 820 | 0.680921 | CGGCCCATTCATGGTGAAGT | 60.681 | 55.000 | 0.00 | 0.00 | 46.65 | 3.01 |
819 | 822 | 0.819582 | GCCCATTCATGGTGAAGTGG | 59.180 | 55.000 | 5.09 | 11.13 | 46.65 | 4.00 |
820 | 823 | 1.477553 | CCCATTCATGGTGAAGTGGG | 58.522 | 55.000 | 17.64 | 17.64 | 46.65 | 4.61 |
821 | 824 | 0.819582 | CCATTCATGGTGAAGTGGGC | 59.180 | 55.000 | 0.00 | 0.00 | 40.05 | 5.36 |
822 | 825 | 0.452987 | CATTCATGGTGAAGTGGGCG | 59.547 | 55.000 | 0.00 | 0.00 | 40.05 | 6.13 |
823 | 826 | 1.315257 | ATTCATGGTGAAGTGGGCGC | 61.315 | 55.000 | 0.00 | 0.00 | 40.05 | 6.53 |
824 | 827 | 2.672651 | CATGGTGAAGTGGGCGCA | 60.673 | 61.111 | 10.83 | 0.00 | 0.00 | 6.09 |
825 | 828 | 2.048023 | CATGGTGAAGTGGGCGCAT | 61.048 | 57.895 | 10.83 | 0.00 | 0.00 | 4.73 |
826 | 829 | 2.048023 | ATGGTGAAGTGGGCGCATG | 61.048 | 57.895 | 10.83 | 0.00 | 0.00 | 4.06 |
827 | 830 | 4.120331 | GGTGAAGTGGGCGCATGC | 62.120 | 66.667 | 10.83 | 7.91 | 41.71 | 4.06 |
828 | 831 | 3.364441 | GTGAAGTGGGCGCATGCA | 61.364 | 61.111 | 19.57 | 2.83 | 45.35 | 3.96 |
829 | 832 | 2.596923 | TGAAGTGGGCGCATGCAA | 60.597 | 55.556 | 19.57 | 0.00 | 45.35 | 4.08 |
831 | 834 | 1.216178 | GAAGTGGGCGCATGCAAAT | 59.784 | 52.632 | 19.57 | 0.00 | 45.35 | 2.32 |
832 | 835 | 0.803380 | GAAGTGGGCGCATGCAAATC | 60.803 | 55.000 | 19.57 | 4.47 | 45.35 | 2.17 |
833 | 836 | 1.534336 | AAGTGGGCGCATGCAAATCA | 61.534 | 50.000 | 19.57 | 7.19 | 45.35 | 2.57 |
834 | 837 | 1.142314 | GTGGGCGCATGCAAATCAT | 59.858 | 52.632 | 19.57 | 0.00 | 45.35 | 2.45 |
860 | 863 | 7.881751 | TGCAATAAGATCTAAGATGGGATCAAG | 59.118 | 37.037 | 0.00 | 0.00 | 40.32 | 3.02 |
869 | 872 | 0.107508 | ATGGGATCAAGTCACGCCTG | 60.108 | 55.000 | 0.00 | 0.00 | 30.69 | 4.85 |
896 | 904 | 1.871039 | TCGTTAGCTCCAACAAACTGC | 59.129 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
931 | 939 | 3.313526 | CCGCAAGAAGAACTATTCCCATG | 59.686 | 47.826 | 0.00 | 0.00 | 43.02 | 3.66 |
932 | 940 | 4.191544 | CGCAAGAAGAACTATTCCCATGA | 58.808 | 43.478 | 0.00 | 0.00 | 43.02 | 3.07 |
933 | 941 | 4.818546 | CGCAAGAAGAACTATTCCCATGAT | 59.181 | 41.667 | 0.00 | 0.00 | 43.02 | 2.45 |
949 | 957 | 9.887862 | ATTCCCATGATTAATCTTTATCCAACT | 57.112 | 29.630 | 16.24 | 0.00 | 0.00 | 3.16 |
1049 | 1678 | 2.568696 | ACCACAATCTCATCGTCTCG | 57.431 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1349 | 2018 | 1.995626 | CATCCCCGTCAAGGAGGGT | 60.996 | 63.158 | 4.48 | 0.00 | 46.17 | 4.34 |
1703 | 2499 | 4.157120 | GACGTGGACATCCCGGGG | 62.157 | 72.222 | 23.50 | 6.77 | 37.93 | 5.73 |
1817 | 2613 | 3.074369 | TGCTCGCCGGGATTCTCA | 61.074 | 61.111 | 2.18 | 0.00 | 0.00 | 3.27 |
1820 | 2616 | 1.443407 | CTCGCCGGGATTCTCATGT | 59.557 | 57.895 | 2.18 | 0.00 | 0.00 | 3.21 |
1964 | 2760 | 3.128242 | GGTTCTTCGTCGTCTCCAAGATA | 59.872 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
1970 | 2766 | 1.609555 | GTCGTCTCCAAGATAGCCGAT | 59.390 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
2116 | 2949 | 6.091849 | GCATACGTATCTGATCTGATGCATTT | 59.908 | 38.462 | 23.52 | 13.26 | 38.60 | 2.32 |
2141 | 2974 | 9.921637 | TTTTTCTGTCATGTATATTTTGGTTCC | 57.078 | 29.630 | 0.00 | 0.00 | 0.00 | 3.62 |
2149 | 2982 | 6.334102 | TGTATATTTTGGTTCCGTTTTGCT | 57.666 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2150 | 2983 | 6.383415 | TGTATATTTTGGTTCCGTTTTGCTC | 58.617 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2157 | 2990 | 3.243367 | TGGTTCCGTTTTGCTCAATTCAG | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2162 | 2995 | 3.436704 | CCGTTTTGCTCAATTCAGCTAGA | 59.563 | 43.478 | 2.11 | 0.00 | 40.39 | 2.43 |
2212 | 3045 | 2.232941 | AGCTCCAAAATTCTGTGGCATG | 59.767 | 45.455 | 0.00 | 0.00 | 34.68 | 4.06 |
2217 | 3050 | 5.435291 | TCCAAAATTCTGTGGCATGTTTTT | 58.565 | 33.333 | 0.00 | 0.00 | 34.68 | 1.94 |
2223 | 3056 | 3.030291 | TCTGTGGCATGTTTTTCACCTT | 58.970 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
2294 | 3236 | 7.894753 | TTGGATTTCCATATATGCTCAACAA | 57.105 | 32.000 | 7.24 | 5.32 | 46.97 | 2.83 |
2424 | 3466 | 9.807921 | TTTTGAAGGGAGTTATACAGAAAGATT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2429 | 3471 | 7.155328 | AGGGAGTTATACAGAAAGATTATGCG | 58.845 | 38.462 | 0.00 | 0.00 | 0.00 | 4.73 |
2493 | 3677 | 4.896080 | GCATGTTGCATTTTTATTTCCCG | 58.104 | 39.130 | 0.00 | 0.00 | 44.26 | 5.14 |
2515 | 3699 | 7.876068 | TCCCGTACATTTCCATTATATTCTGAC | 59.124 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2619 | 3928 | 2.710902 | GGCAATTTCCCCGGCAGTC | 61.711 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2725 | 4372 | 5.600484 | CCCAACTAGATCAGAAGTACATCCT | 59.400 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2754 | 4401 | 4.130118 | GCATGCTAGGAGCTTAGCTTTTA | 58.870 | 43.478 | 11.37 | 3.43 | 44.99 | 1.52 |
2834 | 4487 | 5.673337 | TGAATTCGCAGATGTAATAAGCC | 57.327 | 39.130 | 0.04 | 0.00 | 35.04 | 4.35 |
2911 | 4564 | 7.698163 | ATTAATATTCAGTGGAGGTCCTTCT | 57.302 | 36.000 | 0.00 | 0.00 | 36.82 | 2.85 |
2934 | 4587 | 7.382110 | TCTATCCATTATTCTTGCAGCTACTC | 58.618 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2963 | 4616 | 1.034356 | TCTTTGCAATGCAGTGTGCT | 58.966 | 45.000 | 16.47 | 0.00 | 45.31 | 4.40 |
3049 | 4709 | 1.482593 | GGCAGGCGATATAGTAGGCAT | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
3068 | 4728 | 6.911308 | AGGCATATTACAACAGGGATAAAGT | 58.089 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3080 | 4740 | 5.121811 | CAGGGATAAAGTGGAAGACATCAG | 58.878 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
3129 | 4807 | 2.109126 | GCGTCCAGAAGCACCATCC | 61.109 | 63.158 | 0.47 | 0.00 | 35.86 | 3.51 |
3131 | 4809 | 1.450312 | GTCCAGAAGCACCATCCCG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
3162 | 4840 | 1.582968 | CGCAAAGCACCAGAAGCAT | 59.417 | 52.632 | 0.00 | 0.00 | 0.00 | 3.79 |
3216 | 4913 | 7.387948 | TGAGGTTTATGCTCTTCAAACTTCTAC | 59.612 | 37.037 | 9.11 | 0.00 | 38.42 | 2.59 |
3251 | 4971 | 6.922957 | TCGTTACGTTTATGGTTCTACACTTT | 59.077 | 34.615 | 4.24 | 0.00 | 0.00 | 2.66 |
3288 | 5008 | 4.884164 | TCTAGATTGTCGATCTGCAGAGAA | 59.116 | 41.667 | 22.96 | 6.97 | 44.80 | 2.87 |
3292 | 5012 | 3.156511 | TGTCGATCTGCAGAGAACATC | 57.843 | 47.619 | 22.96 | 13.03 | 0.00 | 3.06 |
3293 | 5013 | 2.159184 | TGTCGATCTGCAGAGAACATCC | 60.159 | 50.000 | 22.96 | 6.56 | 0.00 | 3.51 |
3294 | 5014 | 2.102578 | TCGATCTGCAGAGAACATCCA | 58.897 | 47.619 | 22.96 | 0.00 | 0.00 | 3.41 |
3295 | 5015 | 2.100418 | TCGATCTGCAGAGAACATCCAG | 59.900 | 50.000 | 22.96 | 3.02 | 0.00 | 3.86 |
3296 | 5016 | 2.159128 | CGATCTGCAGAGAACATCCAGT | 60.159 | 50.000 | 22.96 | 0.03 | 0.00 | 4.00 |
3302 | 5030 | 3.257393 | GCAGAGAACATCCAGTGTACAG | 58.743 | 50.000 | 0.00 | 0.00 | 41.14 | 2.74 |
3373 | 5101 | 1.339929 | TCTTAGACTGTTGTGCTCGCA | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
3376 | 5104 | 2.455674 | AGACTGTTGTGCTCGCATTA | 57.544 | 45.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3444 | 6024 | 9.905713 | ACTAGGCTTTATTCAGAAATCATAACA | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3466 | 6046 | 4.085357 | AGCGGAATACAAGCAATATCCA | 57.915 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3474 | 6054 | 3.689347 | ACAAGCAATATCCAGCAGAACA | 58.311 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
3479 | 6059 | 3.812053 | GCAATATCCAGCAGAACACCTAG | 59.188 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3502 | 6084 | 2.933287 | ATGGCGACCCACCTCCAA | 60.933 | 61.111 | 0.00 | 0.00 | 45.77 | 3.53 |
3528 | 6112 | 3.058639 | CACAACTCCTTTTGCTAGAGTGC | 60.059 | 47.826 | 0.00 | 0.00 | 39.92 | 4.40 |
3533 | 6117 | 2.028476 | TCCTTTTGCTAGAGTGCGCTTA | 60.028 | 45.455 | 9.73 | 0.00 | 35.36 | 3.09 |
3537 | 6121 | 4.404507 | TTTGCTAGAGTGCGCTTAAAAG | 57.595 | 40.909 | 9.73 | 1.87 | 35.36 | 2.27 |
3538 | 6122 | 3.313012 | TGCTAGAGTGCGCTTAAAAGA | 57.687 | 42.857 | 9.73 | 0.00 | 35.36 | 2.52 |
3576 | 6160 | 5.265477 | TCAAATCGCAAATCTATGAAAGCG | 58.735 | 37.500 | 0.00 | 0.00 | 45.79 | 4.68 |
3618 | 6202 | 0.172578 | TATCGTTCAGGACCTGTGCG | 59.827 | 55.000 | 21.06 | 22.94 | 33.84 | 5.34 |
3628 | 6212 | 0.391130 | GACCTGTGCGTATGAAGGCA | 60.391 | 55.000 | 0.77 | 0.00 | 43.85 | 4.75 |
3659 | 6247 | 3.921677 | TCCTTATGTTTGTGACGACCTC | 58.078 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
3681 | 6269 | 1.598130 | GCAGTCCGAGGCAACAACT | 60.598 | 57.895 | 0.00 | 0.00 | 41.41 | 3.16 |
3718 | 6306 | 6.940831 | TCAAATCTTGTGTCAGAACAATGA | 57.059 | 33.333 | 0.00 | 0.00 | 39.25 | 2.57 |
3828 | 6416 | 0.664761 | CCCTTATCAGTGCCGCATTG | 59.335 | 55.000 | 9.51 | 9.51 | 0.00 | 2.82 |
3829 | 6417 | 0.664761 | CCTTATCAGTGCCGCATTGG | 59.335 | 55.000 | 15.13 | 0.17 | 42.50 | 3.16 |
3840 | 6428 | 3.744941 | CGCATTGGCAAATGTGGAT | 57.255 | 47.368 | 18.09 | 0.00 | 46.20 | 3.41 |
3841 | 6429 | 1.282817 | CGCATTGGCAAATGTGGATG | 58.717 | 50.000 | 18.09 | 0.00 | 46.20 | 3.51 |
3842 | 6430 | 1.135053 | CGCATTGGCAAATGTGGATGA | 60.135 | 47.619 | 18.09 | 0.00 | 46.20 | 2.92 |
3843 | 6431 | 2.674462 | CGCATTGGCAAATGTGGATGAA | 60.674 | 45.455 | 18.09 | 0.00 | 46.20 | 2.57 |
3844 | 6432 | 2.933906 | GCATTGGCAAATGTGGATGAAG | 59.066 | 45.455 | 15.28 | 0.00 | 44.34 | 3.02 |
3845 | 6433 | 3.527533 | CATTGGCAAATGTGGATGAAGG | 58.472 | 45.455 | 3.01 | 0.00 | 38.72 | 3.46 |
3846 | 6434 | 2.307496 | TGGCAAATGTGGATGAAGGT | 57.693 | 45.000 | 0.00 | 0.00 | 0.00 | 3.50 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
5 | 6 | 0.526211 | GGATTTGGCCCGAACTGTTC | 59.474 | 55.000 | 10.48 | 10.48 | 0.00 | 3.18 |
6 | 7 | 0.112412 | AGGATTTGGCCCGAACTGTT | 59.888 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
7 | 8 | 0.609131 | CAGGATTTGGCCCGAACTGT | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
8 | 9 | 0.322456 | TCAGGATTTGGCCCGAACTG | 60.322 | 55.000 | 0.00 | 2.51 | 0.00 | 3.16 |
9 | 10 | 0.404040 | TTCAGGATTTGGCCCGAACT | 59.596 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
10 | 11 | 0.811281 | CTTCAGGATTTGGCCCGAAC | 59.189 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
11 | 12 | 0.695924 | TCTTCAGGATTTGGCCCGAA | 59.304 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
12 | 13 | 0.695924 | TTCTTCAGGATTTGGCCCGA | 59.304 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
13 | 14 | 1.474077 | CTTTCTTCAGGATTTGGCCCG | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
14 | 15 | 1.205655 | GCTTTCTTCAGGATTTGGCCC | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
15 | 16 | 2.165234 | GAGCTTTCTTCAGGATTTGGCC | 59.835 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
16 | 17 | 2.821969 | TGAGCTTTCTTCAGGATTTGGC | 59.178 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
17 | 18 | 5.458041 | TTTGAGCTTTCTTCAGGATTTGG | 57.542 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
18 | 19 | 5.404667 | GCTTTTGAGCTTTCTTCAGGATTTG | 59.595 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
19 | 20 | 5.536260 | GCTTTTGAGCTTTCTTCAGGATTT | 58.464 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
20 | 21 | 4.320788 | CGCTTTTGAGCTTTCTTCAGGATT | 60.321 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
21 | 22 | 3.190118 | CGCTTTTGAGCTTTCTTCAGGAT | 59.810 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
22 | 23 | 2.549754 | CGCTTTTGAGCTTTCTTCAGGA | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
23 | 24 | 2.291741 | ACGCTTTTGAGCTTTCTTCAGG | 59.708 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
24 | 25 | 3.615849 | ACGCTTTTGAGCTTTCTTCAG | 57.384 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
25 | 26 | 3.128589 | ACAACGCTTTTGAGCTTTCTTCA | 59.871 | 39.130 | 2.19 | 0.00 | 0.00 | 3.02 |
26 | 27 | 3.695816 | ACAACGCTTTTGAGCTTTCTTC | 58.304 | 40.909 | 2.19 | 0.00 | 0.00 | 2.87 |
27 | 28 | 3.782889 | ACAACGCTTTTGAGCTTTCTT | 57.217 | 38.095 | 2.19 | 0.00 | 0.00 | 2.52 |
28 | 29 | 3.782889 | AACAACGCTTTTGAGCTTTCT | 57.217 | 38.095 | 2.19 | 0.00 | 0.00 | 2.52 |
29 | 30 | 3.857093 | TCAAACAACGCTTTTGAGCTTTC | 59.143 | 39.130 | 2.19 | 0.00 | 37.91 | 2.62 |
30 | 31 | 3.843999 | TCAAACAACGCTTTTGAGCTTT | 58.156 | 36.364 | 2.19 | 0.00 | 37.91 | 3.51 |
31 | 32 | 3.502191 | TCAAACAACGCTTTTGAGCTT | 57.498 | 38.095 | 2.19 | 0.00 | 37.91 | 3.74 |
32 | 33 | 3.066621 | TCATCAAACAACGCTTTTGAGCT | 59.933 | 39.130 | 11.08 | 0.00 | 44.17 | 4.09 |
33 | 34 | 3.371168 | TCATCAAACAACGCTTTTGAGC | 58.629 | 40.909 | 11.08 | 0.00 | 44.17 | 4.26 |
34 | 35 | 3.423206 | GCTCATCAAACAACGCTTTTGAG | 59.577 | 43.478 | 11.08 | 0.00 | 44.17 | 3.02 |
35 | 36 | 3.371168 | GCTCATCAAACAACGCTTTTGA | 58.629 | 40.909 | 8.59 | 8.59 | 44.84 | 2.69 |
36 | 37 | 2.472488 | GGCTCATCAAACAACGCTTTTG | 59.528 | 45.455 | 0.00 | 0.00 | 35.61 | 2.44 |
37 | 38 | 2.362077 | AGGCTCATCAAACAACGCTTTT | 59.638 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
38 | 39 | 1.956477 | AGGCTCATCAAACAACGCTTT | 59.044 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
39 | 40 | 1.267806 | CAGGCTCATCAAACAACGCTT | 59.732 | 47.619 | 0.00 | 0.00 | 0.00 | 4.68 |
40 | 41 | 0.877071 | CAGGCTCATCAAACAACGCT | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
41 | 42 | 0.730494 | GCAGGCTCATCAAACAACGC | 60.730 | 55.000 | 0.00 | 0.00 | 0.00 | 4.84 |
42 | 43 | 0.453282 | CGCAGGCTCATCAAACAACG | 60.453 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
43 | 44 | 0.593128 | ACGCAGGCTCATCAAACAAC | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
44 | 45 | 2.076100 | CTACGCAGGCTCATCAAACAA | 58.924 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
45 | 46 | 1.001974 | ACTACGCAGGCTCATCAAACA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
46 | 47 | 1.726853 | ACTACGCAGGCTCATCAAAC | 58.273 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
47 | 48 | 3.819564 | ATACTACGCAGGCTCATCAAA | 57.180 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
48 | 49 | 3.819564 | AATACTACGCAGGCTCATCAA | 57.180 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
49 | 50 | 3.255888 | CCTAATACTACGCAGGCTCATCA | 59.744 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
50 | 51 | 3.256136 | ACCTAATACTACGCAGGCTCATC | 59.744 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
51 | 52 | 3.231818 | ACCTAATACTACGCAGGCTCAT | 58.768 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
52 | 53 | 2.662866 | ACCTAATACTACGCAGGCTCA | 58.337 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
53 | 54 | 3.819902 | ACTACCTAATACTACGCAGGCTC | 59.180 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
54 | 55 | 3.830121 | ACTACCTAATACTACGCAGGCT | 58.170 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
55 | 56 | 4.296690 | CAACTACCTAATACTACGCAGGC | 58.703 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
56 | 57 | 4.340381 | ACCAACTACCTAATACTACGCAGG | 59.660 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
57 | 58 | 5.066893 | TGACCAACTACCTAATACTACGCAG | 59.933 | 44.000 | 0.00 | 0.00 | 0.00 | 5.18 |
58 | 59 | 4.949238 | TGACCAACTACCTAATACTACGCA | 59.051 | 41.667 | 0.00 | 0.00 | 0.00 | 5.24 |
59 | 60 | 5.505173 | TGACCAACTACCTAATACTACGC | 57.495 | 43.478 | 0.00 | 0.00 | 0.00 | 4.42 |
60 | 61 | 8.937634 | AATTTGACCAACTACCTAATACTACG | 57.062 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
69 | 70 | 9.416284 | TCTTCTTAAAAATTTGACCAACTACCT | 57.584 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
129 | 130 | 1.111277 | AAGCACCCAACCTGTGAAAC | 58.889 | 50.000 | 0.00 | 0.00 | 35.74 | 2.78 |
130 | 131 | 1.110442 | CAAGCACCCAACCTGTGAAA | 58.890 | 50.000 | 0.00 | 0.00 | 35.74 | 2.69 |
131 | 132 | 1.391157 | GCAAGCACCCAACCTGTGAA | 61.391 | 55.000 | 0.00 | 0.00 | 35.74 | 3.18 |
132 | 133 | 1.827789 | GCAAGCACCCAACCTGTGA | 60.828 | 57.895 | 0.00 | 0.00 | 35.74 | 3.58 |
133 | 134 | 1.674764 | TTGCAAGCACCCAACCTGTG | 61.675 | 55.000 | 0.00 | 0.00 | 36.79 | 3.66 |
134 | 135 | 0.975040 | TTTGCAAGCACCCAACCTGT | 60.975 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
135 | 136 | 0.177604 | TTTTGCAAGCACCCAACCTG | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
136 | 137 | 0.177836 | GTTTTGCAAGCACCCAACCT | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
137 | 138 | 0.177836 | AGTTTTGCAAGCACCCAACC | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
138 | 139 | 1.289276 | CAGTTTTGCAAGCACCCAAC | 58.711 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
139 | 140 | 0.177604 | CCAGTTTTGCAAGCACCCAA | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
140 | 141 | 0.685785 | TCCAGTTTTGCAAGCACCCA | 60.686 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
141 | 142 | 0.249447 | GTCCAGTTTTGCAAGCACCC | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
142 | 143 | 0.459489 | TGTCCAGTTTTGCAAGCACC | 59.541 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
143 | 144 | 1.559831 | GTGTCCAGTTTTGCAAGCAC | 58.440 | 50.000 | 0.00 | 0.61 | 0.00 | 4.40 |
144 | 145 | 0.100325 | CGTGTCCAGTTTTGCAAGCA | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
145 | 146 | 0.380378 | TCGTGTCCAGTTTTGCAAGC | 59.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
146 | 147 | 1.939934 | TCTCGTGTCCAGTTTTGCAAG | 59.060 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
147 | 148 | 1.939934 | CTCTCGTGTCCAGTTTTGCAA | 59.060 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
362 | 365 | 9.346515 | ACCCATATATATTCTACTTGCCCTAAA | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
363 | 366 | 8.768397 | CACCCATATATATTCTACTTGCCCTAA | 58.232 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
364 | 367 | 7.904564 | ACACCCATATATATTCTACTTGCCCTA | 59.095 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
365 | 368 | 6.735704 | ACACCCATATATATTCTACTTGCCCT | 59.264 | 38.462 | 0.00 | 0.00 | 0.00 | 5.19 |
366 | 369 | 6.823689 | CACACCCATATATATTCTACTTGCCC | 59.176 | 42.308 | 0.00 | 0.00 | 0.00 | 5.36 |
367 | 370 | 7.394816 | ACACACCCATATATATTCTACTTGCC | 58.605 | 38.462 | 0.00 | 0.00 | 0.00 | 4.52 |
368 | 371 | 8.314751 | AGACACACCCATATATATTCTACTTGC | 58.685 | 37.037 | 0.00 | 0.00 | 0.00 | 4.01 |
371 | 374 | 9.702253 | CCTAGACACACCCATATATATTCTACT | 57.298 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
372 | 375 | 8.915036 | CCCTAGACACACCCATATATATTCTAC | 58.085 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
373 | 376 | 7.563924 | GCCCTAGACACACCCATATATATTCTA | 59.436 | 40.741 | 0.00 | 0.00 | 0.00 | 2.10 |
374 | 377 | 6.384305 | GCCCTAGACACACCCATATATATTCT | 59.616 | 42.308 | 0.00 | 0.00 | 0.00 | 2.40 |
375 | 378 | 6.156256 | TGCCCTAGACACACCCATATATATTC | 59.844 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
376 | 379 | 6.029431 | TGCCCTAGACACACCCATATATATT | 58.971 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
377 | 380 | 5.425539 | GTGCCCTAGACACACCCATATATAT | 59.574 | 44.000 | 10.07 | 0.00 | 37.96 | 0.86 |
378 | 381 | 4.775780 | GTGCCCTAGACACACCCATATATA | 59.224 | 45.833 | 10.07 | 0.00 | 37.96 | 0.86 |
379 | 382 | 3.583086 | GTGCCCTAGACACACCCATATAT | 59.417 | 47.826 | 10.07 | 0.00 | 37.96 | 0.86 |
380 | 383 | 2.969950 | GTGCCCTAGACACACCCATATA | 59.030 | 50.000 | 10.07 | 0.00 | 37.96 | 0.86 |
381 | 384 | 1.768870 | GTGCCCTAGACACACCCATAT | 59.231 | 52.381 | 10.07 | 0.00 | 37.96 | 1.78 |
382 | 385 | 1.200519 | GTGCCCTAGACACACCCATA | 58.799 | 55.000 | 10.07 | 0.00 | 37.96 | 2.74 |
383 | 386 | 0.840288 | TGTGCCCTAGACACACCCAT | 60.840 | 55.000 | 12.81 | 0.00 | 42.88 | 4.00 |
384 | 387 | 1.460497 | TGTGCCCTAGACACACCCA | 60.460 | 57.895 | 12.81 | 0.00 | 42.88 | 4.51 |
385 | 388 | 3.478780 | TGTGCCCTAGACACACCC | 58.521 | 61.111 | 12.81 | 0.00 | 42.88 | 4.61 |
389 | 392 | 4.250116 | CATCTAGATGTGCCCTAGACAC | 57.750 | 50.000 | 22.42 | 8.47 | 43.57 | 3.67 |
401 | 404 | 5.641209 | GCAATAACTAGGGCACATCTAGATG | 59.359 | 44.000 | 27.63 | 27.63 | 44.15 | 2.90 |
402 | 405 | 5.307976 | TGCAATAACTAGGGCACATCTAGAT | 59.692 | 40.000 | 0.00 | 0.00 | 38.02 | 1.98 |
403 | 406 | 4.653801 | TGCAATAACTAGGGCACATCTAGA | 59.346 | 41.667 | 0.00 | 0.00 | 38.02 | 2.43 |
404 | 407 | 4.960938 | TGCAATAACTAGGGCACATCTAG | 58.039 | 43.478 | 0.00 | 0.00 | 39.88 | 2.43 |
406 | 409 | 3.931907 | TGCAATAACTAGGGCACATCT | 57.068 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
411 | 414 | 3.931907 | AGATGTGCAATAACTAGGGCA | 57.068 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
412 | 415 | 5.237344 | CACTTAGATGTGCAATAACTAGGGC | 59.763 | 44.000 | 0.00 | 0.00 | 0.00 | 5.19 |
413 | 416 | 6.582636 | TCACTTAGATGTGCAATAACTAGGG | 58.417 | 40.000 | 0.00 | 0.00 | 37.81 | 3.53 |
414 | 417 | 8.554528 | CATTCACTTAGATGTGCAATAACTAGG | 58.445 | 37.037 | 0.00 | 0.00 | 37.81 | 3.02 |
415 | 418 | 9.317936 | TCATTCACTTAGATGTGCAATAACTAG | 57.682 | 33.333 | 0.00 | 0.00 | 37.81 | 2.57 |
416 | 419 | 9.665719 | TTCATTCACTTAGATGTGCAATAACTA | 57.334 | 29.630 | 0.00 | 0.00 | 37.81 | 2.24 |
417 | 420 | 8.565896 | TTCATTCACTTAGATGTGCAATAACT | 57.434 | 30.769 | 0.00 | 0.00 | 37.81 | 2.24 |
418 | 421 | 9.443283 | GATTCATTCACTTAGATGTGCAATAAC | 57.557 | 33.333 | 0.00 | 0.00 | 37.81 | 1.89 |
419 | 422 | 9.176460 | TGATTCATTCACTTAGATGTGCAATAA | 57.824 | 29.630 | 0.00 | 0.00 | 37.81 | 1.40 |
420 | 423 | 8.735692 | TGATTCATTCACTTAGATGTGCAATA | 57.264 | 30.769 | 0.00 | 0.00 | 37.81 | 1.90 |
421 | 424 | 7.634671 | TGATTCATTCACTTAGATGTGCAAT | 57.365 | 32.000 | 0.00 | 0.00 | 37.81 | 3.56 |
422 | 425 | 7.451501 | TTGATTCATTCACTTAGATGTGCAA | 57.548 | 32.000 | 0.00 | 0.00 | 37.81 | 4.08 |
423 | 426 | 7.040548 | TGTTTGATTCATTCACTTAGATGTGCA | 60.041 | 33.333 | 0.00 | 0.00 | 37.81 | 4.57 |
424 | 427 | 7.307694 | TGTTTGATTCATTCACTTAGATGTGC | 58.692 | 34.615 | 0.00 | 0.00 | 37.81 | 4.57 |
502 | 505 | 9.708092 | CACATCTAAGTCATATGTCATTGATCT | 57.292 | 33.333 | 1.90 | 0.00 | 31.60 | 2.75 |
503 | 506 | 8.441608 | GCACATCTAAGTCATATGTCATTGATC | 58.558 | 37.037 | 1.90 | 0.00 | 31.60 | 2.92 |
504 | 507 | 7.935210 | TGCACATCTAAGTCATATGTCATTGAT | 59.065 | 33.333 | 1.90 | 0.00 | 31.60 | 2.57 |
505 | 508 | 7.274447 | TGCACATCTAAGTCATATGTCATTGA | 58.726 | 34.615 | 1.90 | 0.00 | 31.60 | 2.57 |
506 | 509 | 7.486802 | TGCACATCTAAGTCATATGTCATTG | 57.513 | 36.000 | 1.90 | 0.00 | 31.60 | 2.82 |
507 | 510 | 8.687292 | ATTGCACATCTAAGTCATATGTCATT | 57.313 | 30.769 | 1.90 | 0.00 | 31.60 | 2.57 |
508 | 511 | 9.212641 | GTATTGCACATCTAAGTCATATGTCAT | 57.787 | 33.333 | 1.90 | 0.00 | 31.60 | 3.06 |
509 | 512 | 8.424133 | AGTATTGCACATCTAAGTCATATGTCA | 58.576 | 33.333 | 1.90 | 0.00 | 31.60 | 3.58 |
510 | 513 | 8.824159 | AGTATTGCACATCTAAGTCATATGTC | 57.176 | 34.615 | 1.90 | 0.00 | 31.60 | 3.06 |
514 | 517 | 9.710900 | CCATAAGTATTGCACATCTAAGTCATA | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
515 | 518 | 7.173907 | GCCATAAGTATTGCACATCTAAGTCAT | 59.826 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
516 | 519 | 6.483307 | GCCATAAGTATTGCACATCTAAGTCA | 59.517 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
517 | 520 | 6.483307 | TGCCATAAGTATTGCACATCTAAGTC | 59.517 | 38.462 | 0.00 | 0.00 | 30.49 | 3.01 |
518 | 521 | 6.356556 | TGCCATAAGTATTGCACATCTAAGT | 58.643 | 36.000 | 0.00 | 0.00 | 30.49 | 2.24 |
519 | 522 | 6.866010 | TGCCATAAGTATTGCACATCTAAG | 57.134 | 37.500 | 0.00 | 0.00 | 30.49 | 2.18 |
527 | 530 | 6.173427 | TCTAGATGTGCCATAAGTATTGCA | 57.827 | 37.500 | 0.00 | 0.00 | 32.69 | 4.08 |
528 | 531 | 7.069852 | CATCTAGATGTGCCATAAGTATTGC | 57.930 | 40.000 | 22.42 | 0.00 | 34.23 | 3.56 |
574 | 577 | 9.232882 | TGTACCCCTCAAAGAAAATACCTATAT | 57.767 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
575 | 578 | 8.626917 | TGTACCCCTCAAAGAAAATACCTATA | 57.373 | 34.615 | 0.00 | 0.00 | 0.00 | 1.31 |
576 | 579 | 7.519347 | TGTACCCCTCAAAGAAAATACCTAT | 57.481 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
577 | 580 | 6.956102 | TGTACCCCTCAAAGAAAATACCTA | 57.044 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
578 | 581 | 5.853572 | TGTACCCCTCAAAGAAAATACCT | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
579 | 582 | 8.218488 | AGATATGTACCCCTCAAAGAAAATACC | 58.782 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
580 | 583 | 9.628500 | AAGATATGTACCCCTCAAAGAAAATAC | 57.372 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
581 | 584 | 9.627123 | CAAGATATGTACCCCTCAAAGAAAATA | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
582 | 585 | 8.116026 | ACAAGATATGTACCCCTCAAAGAAAAT | 58.884 | 33.333 | 0.00 | 0.00 | 41.63 | 1.82 |
583 | 586 | 7.466804 | ACAAGATATGTACCCCTCAAAGAAAA | 58.533 | 34.615 | 0.00 | 0.00 | 41.63 | 2.29 |
584 | 587 | 7.027874 | ACAAGATATGTACCCCTCAAAGAAA | 57.972 | 36.000 | 0.00 | 0.00 | 41.63 | 2.52 |
585 | 588 | 6.636454 | ACAAGATATGTACCCCTCAAAGAA | 57.364 | 37.500 | 0.00 | 0.00 | 41.63 | 2.52 |
586 | 589 | 6.636454 | AACAAGATATGTACCCCTCAAAGA | 57.364 | 37.500 | 0.00 | 0.00 | 42.99 | 2.52 |
587 | 590 | 7.703058 | AAAACAAGATATGTACCCCTCAAAG | 57.297 | 36.000 | 0.00 | 0.00 | 42.99 | 2.77 |
615 | 618 | 9.905713 | AAATCTAGATACATACCTTTTGCTCAA | 57.094 | 29.630 | 5.46 | 0.00 | 0.00 | 3.02 |
636 | 639 | 8.970813 | ACCTCCCCCTCAAAAATATATAAATCT | 58.029 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
640 | 643 | 9.189750 | ACATACCTCCCCCTCAAAAATATATAA | 57.810 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
641 | 644 | 8.766492 | ACATACCTCCCCCTCAAAAATATATA | 57.234 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
642 | 645 | 7.663501 | ACATACCTCCCCCTCAAAAATATAT | 57.336 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
643 | 646 | 8.766492 | ATACATACCTCCCCCTCAAAAATATA | 57.234 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
644 | 647 | 7.257419 | GGATACATACCTCCCCCTCAAAAATAT | 60.257 | 40.741 | 0.00 | 0.00 | 0.00 | 1.28 |
645 | 648 | 6.045106 | GGATACATACCTCCCCCTCAAAAATA | 59.955 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
646 | 649 | 5.162980 | GGATACATACCTCCCCCTCAAAAAT | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 1.82 |
647 | 650 | 4.167307 | GGATACATACCTCCCCCTCAAAAA | 59.833 | 45.833 | 0.00 | 0.00 | 0.00 | 1.94 |
648 | 651 | 3.720002 | GGATACATACCTCCCCCTCAAAA | 59.280 | 47.826 | 0.00 | 0.00 | 0.00 | 2.44 |
649 | 652 | 3.050564 | AGGATACATACCTCCCCCTCAAA | 60.051 | 47.826 | 0.00 | 0.00 | 41.41 | 2.69 |
650 | 653 | 2.527057 | AGGATACATACCTCCCCCTCAA | 59.473 | 50.000 | 0.00 | 0.00 | 41.41 | 3.02 |
651 | 654 | 2.161624 | AGGATACATACCTCCCCCTCA | 58.838 | 52.381 | 0.00 | 0.00 | 41.41 | 3.86 |
652 | 655 | 3.277416 | AAGGATACATACCTCCCCCTC | 57.723 | 52.381 | 0.00 | 0.00 | 36.67 | 4.30 |
653 | 656 | 3.745678 | AAAGGATACATACCTCCCCCT | 57.254 | 47.619 | 0.00 | 0.00 | 36.67 | 4.79 |
654 | 657 | 4.808767 | AAAAAGGATACATACCTCCCCC | 57.191 | 45.455 | 0.00 | 0.00 | 36.67 | 5.40 |
700 | 703 | 9.661563 | CTATACATACCTACCTTGTCACAAAAA | 57.338 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
701 | 704 | 9.038072 | TCTATACATACCTACCTTGTCACAAAA | 57.962 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
702 | 705 | 8.598202 | TCTATACATACCTACCTTGTCACAAA | 57.402 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
703 | 706 | 8.638873 | CATCTATACATACCTACCTTGTCACAA | 58.361 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
704 | 707 | 7.783119 | ACATCTATACATACCTACCTTGTCACA | 59.217 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
705 | 708 | 8.082852 | CACATCTATACATACCTACCTTGTCAC | 58.917 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
706 | 709 | 7.783119 | ACACATCTATACATACCTACCTTGTCA | 59.217 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
707 | 710 | 8.082852 | CACACATCTATACATACCTACCTTGTC | 58.917 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
708 | 711 | 7.563924 | ACACACATCTATACATACCTACCTTGT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
709 | 712 | 7.867909 | CACACACATCTATACATACCTACCTTG | 59.132 | 40.741 | 0.00 | 0.00 | 0.00 | 3.61 |
710 | 713 | 7.563924 | ACACACACATCTATACATACCTACCTT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.50 |
711 | 714 | 7.014326 | CACACACACATCTATACATACCTACCT | 59.986 | 40.741 | 0.00 | 0.00 | 0.00 | 3.08 |
712 | 715 | 7.145985 | CACACACACATCTATACATACCTACC | 58.854 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
713 | 716 | 7.648112 | CACACACACACATCTATACATACCTAC | 59.352 | 40.741 | 0.00 | 0.00 | 0.00 | 3.18 |
714 | 717 | 7.340999 | ACACACACACACATCTATACATACCTA | 59.659 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
715 | 718 | 6.154534 | ACACACACACACATCTATACATACCT | 59.845 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
716 | 719 | 6.338146 | ACACACACACACATCTATACATACC | 58.662 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
717 | 720 | 9.529325 | AATACACACACACACATCTATACATAC | 57.471 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
725 | 728 | 9.719355 | TTTAGATAAATACACACACACACATCT | 57.281 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
726 | 729 | 9.755064 | GTTTAGATAAATACACACACACACATC | 57.245 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
727 | 730 | 9.278978 | TGTTTAGATAAATACACACACACACAT | 57.721 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
728 | 731 | 8.664211 | TGTTTAGATAAATACACACACACACA | 57.336 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
729 | 732 | 7.744715 | GCTGTTTAGATAAATACACACACACAC | 59.255 | 37.037 | 0.00 | 0.00 | 0.00 | 3.82 |
739 | 742 | 9.109393 | TGGATTGACAGCTGTTTAGATAAATAC | 57.891 | 33.333 | 22.65 | 12.70 | 0.00 | 1.89 |
752 | 755 | 1.542492 | AGGCTTTGGATTGACAGCTG | 58.458 | 50.000 | 13.48 | 13.48 | 32.52 | 4.24 |
753 | 756 | 3.201708 | AGATAGGCTTTGGATTGACAGCT | 59.798 | 43.478 | 0.00 | 0.00 | 32.52 | 4.24 |
754 | 757 | 3.549794 | AGATAGGCTTTGGATTGACAGC | 58.450 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
755 | 758 | 5.988561 | GTCTAGATAGGCTTTGGATTGACAG | 59.011 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
756 | 759 | 5.425217 | TGTCTAGATAGGCTTTGGATTGACA | 59.575 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
757 | 760 | 5.918608 | TGTCTAGATAGGCTTTGGATTGAC | 58.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
758 | 761 | 6.349300 | GTTGTCTAGATAGGCTTTGGATTGA | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
759 | 762 | 5.529060 | GGTTGTCTAGATAGGCTTTGGATTG | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 2.67 |
760 | 763 | 5.191722 | TGGTTGTCTAGATAGGCTTTGGATT | 59.808 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
761 | 764 | 4.721776 | TGGTTGTCTAGATAGGCTTTGGAT | 59.278 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
762 | 765 | 4.081087 | GTGGTTGTCTAGATAGGCTTTGGA | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
763 | 766 | 4.192317 | GTGGTTGTCTAGATAGGCTTTGG | 58.808 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
764 | 767 | 4.832248 | TGTGGTTGTCTAGATAGGCTTTG | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
765 | 768 | 5.426833 | AGATGTGGTTGTCTAGATAGGCTTT | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
767 | 770 | 4.551671 | AGATGTGGTTGTCTAGATAGGCT | 58.448 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
768 | 771 | 4.946478 | AGATGTGGTTGTCTAGATAGGC | 57.054 | 45.455 | 0.00 | 0.00 | 0.00 | 3.93 |
769 | 772 | 5.536538 | TGCTAGATGTGGTTGTCTAGATAGG | 59.463 | 44.000 | 12.27 | 0.00 | 44.22 | 2.57 |
770 | 773 | 6.294453 | CCTGCTAGATGTGGTTGTCTAGATAG | 60.294 | 46.154 | 12.27 | 9.21 | 44.22 | 2.08 |
771 | 774 | 5.536538 | CCTGCTAGATGTGGTTGTCTAGATA | 59.463 | 44.000 | 12.27 | 0.00 | 44.22 | 1.98 |
772 | 775 | 4.343526 | CCTGCTAGATGTGGTTGTCTAGAT | 59.656 | 45.833 | 12.27 | 0.00 | 44.22 | 1.98 |
773 | 776 | 3.701542 | CCTGCTAGATGTGGTTGTCTAGA | 59.298 | 47.826 | 12.27 | 0.00 | 44.22 | 2.43 |
774 | 777 | 3.449018 | ACCTGCTAGATGTGGTTGTCTAG | 59.551 | 47.826 | 0.00 | 5.31 | 44.27 | 2.43 |
776 | 779 | 2.260822 | ACCTGCTAGATGTGGTTGTCT | 58.739 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
777 | 780 | 2.770164 | ACCTGCTAGATGTGGTTGTC | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
778 | 781 | 2.612972 | CGAACCTGCTAGATGTGGTTGT | 60.613 | 50.000 | 11.85 | 0.00 | 35.53 | 3.32 |
779 | 782 | 2.002586 | CGAACCTGCTAGATGTGGTTG | 58.997 | 52.381 | 11.85 | 4.12 | 35.53 | 3.77 |
780 | 783 | 1.066143 | CCGAACCTGCTAGATGTGGTT | 60.066 | 52.381 | 0.00 | 1.27 | 35.53 | 3.67 |
781 | 784 | 0.537188 | CCGAACCTGCTAGATGTGGT | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
782 | 785 | 0.811616 | GCCGAACCTGCTAGATGTGG | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
783 | 786 | 0.811616 | GGCCGAACCTGCTAGATGTG | 60.812 | 60.000 | 0.00 | 0.00 | 34.51 | 3.21 |
785 | 788 | 1.227674 | GGGCCGAACCTGCTAGATG | 60.228 | 63.158 | 0.00 | 0.00 | 39.10 | 2.90 |
787 | 790 | 1.271840 | AATGGGCCGAACCTGCTAGA | 61.272 | 55.000 | 0.00 | 0.00 | 39.10 | 2.43 |
788 | 791 | 0.815615 | GAATGGGCCGAACCTGCTAG | 60.816 | 60.000 | 0.00 | 0.00 | 39.10 | 3.42 |
789 | 792 | 1.223487 | GAATGGGCCGAACCTGCTA | 59.777 | 57.895 | 0.00 | 0.00 | 39.10 | 3.49 |
790 | 793 | 2.044946 | GAATGGGCCGAACCTGCT | 60.045 | 61.111 | 0.00 | 0.00 | 39.10 | 4.24 |
791 | 794 | 1.754234 | ATGAATGGGCCGAACCTGC | 60.754 | 57.895 | 0.00 | 0.00 | 39.10 | 4.85 |
793 | 796 | 1.076777 | CCATGAATGGGCCGAACCT | 60.077 | 57.895 | 0.00 | 0.00 | 44.31 | 3.50 |
794 | 797 | 3.525221 | CCATGAATGGGCCGAACC | 58.475 | 61.111 | 0.00 | 0.00 | 44.31 | 3.62 |
803 | 806 | 0.452987 | CGCCCACTTCACCATGAATG | 59.547 | 55.000 | 0.00 | 0.00 | 35.59 | 2.67 |
804 | 807 | 1.315257 | GCGCCCACTTCACCATGAAT | 61.315 | 55.000 | 0.00 | 0.00 | 35.59 | 2.57 |
807 | 810 | 2.048023 | ATGCGCCCACTTCACCATG | 61.048 | 57.895 | 4.18 | 0.00 | 0.00 | 3.66 |
808 | 811 | 2.048023 | CATGCGCCCACTTCACCAT | 61.048 | 57.895 | 4.18 | 0.00 | 0.00 | 3.55 |
811 | 814 | 2.419057 | TTTGCATGCGCCCACTTCAC | 62.419 | 55.000 | 14.09 | 0.00 | 37.32 | 3.18 |
812 | 815 | 1.534336 | ATTTGCATGCGCCCACTTCA | 61.534 | 50.000 | 14.09 | 0.00 | 37.32 | 3.02 |
813 | 816 | 0.803380 | GATTTGCATGCGCCCACTTC | 60.803 | 55.000 | 14.09 | 0.00 | 37.32 | 3.01 |
814 | 817 | 1.216178 | GATTTGCATGCGCCCACTT | 59.784 | 52.632 | 14.09 | 0.00 | 37.32 | 3.16 |
815 | 818 | 1.324740 | ATGATTTGCATGCGCCCACT | 61.325 | 50.000 | 14.09 | 0.00 | 35.42 | 4.00 |
816 | 819 | 1.142314 | ATGATTTGCATGCGCCCAC | 59.858 | 52.632 | 14.09 | 4.09 | 35.42 | 4.61 |
817 | 820 | 3.618652 | ATGATTTGCATGCGCCCA | 58.381 | 50.000 | 14.09 | 8.67 | 35.42 | 5.36 |
827 | 830 | 9.841880 | CCATCTTAGATCTTATTGCATGATTTG | 57.158 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
828 | 831 | 9.021807 | CCCATCTTAGATCTTATTGCATGATTT | 57.978 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
829 | 832 | 8.388589 | TCCCATCTTAGATCTTATTGCATGATT | 58.611 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
831 | 834 | 7.320384 | TCCCATCTTAGATCTTATTGCATGA | 57.680 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
832 | 835 | 7.827729 | TGATCCCATCTTAGATCTTATTGCATG | 59.172 | 37.037 | 0.00 | 0.00 | 39.72 | 4.06 |
833 | 836 | 7.925622 | TGATCCCATCTTAGATCTTATTGCAT | 58.074 | 34.615 | 0.00 | 0.00 | 39.72 | 3.96 |
834 | 837 | 7.320384 | TGATCCCATCTTAGATCTTATTGCA | 57.680 | 36.000 | 0.00 | 0.00 | 39.72 | 4.08 |
835 | 838 | 7.882271 | ACTTGATCCCATCTTAGATCTTATTGC | 59.118 | 37.037 | 0.00 | 0.00 | 39.72 | 3.56 |
836 | 839 | 9.434420 | GACTTGATCCCATCTTAGATCTTATTG | 57.566 | 37.037 | 0.00 | 0.00 | 39.72 | 1.90 |
837 | 840 | 9.163894 | TGACTTGATCCCATCTTAGATCTTATT | 57.836 | 33.333 | 0.00 | 0.00 | 39.72 | 1.40 |
869 | 872 | 2.094182 | TGTTGGAGCTAACGACCTGATC | 60.094 | 50.000 | 5.96 | 0.00 | 33.28 | 2.92 |
896 | 904 | 3.422417 | TCTTGCGGAGAGATTAACGAG | 57.578 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
931 | 939 | 9.057089 | CACCTGGTAGTTGGATAAAGATTAATC | 57.943 | 37.037 | 7.41 | 7.41 | 0.00 | 1.75 |
932 | 940 | 8.778059 | TCACCTGGTAGTTGGATAAAGATTAAT | 58.222 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
933 | 941 | 8.044908 | GTCACCTGGTAGTTGGATAAAGATTAA | 58.955 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
939 | 947 | 3.618019 | GCGTCACCTGGTAGTTGGATAAA | 60.618 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
973 | 981 | 2.936032 | AGGAGGTGGAAGGGTGCC | 60.936 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
1049 | 1678 | 1.730547 | GCGCTGCACCATTGTTGAC | 60.731 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
1538 | 2334 | 1.911766 | GTCCTGGTCGAGGTCCCAA | 60.912 | 63.158 | 0.26 | 0.00 | 43.37 | 4.12 |
1817 | 2613 | 1.511305 | CTGGTACGCCGAGTCACAT | 59.489 | 57.895 | 0.00 | 0.00 | 37.67 | 3.21 |
1820 | 2616 | 2.282674 | ACCTGGTACGCCGAGTCA | 60.283 | 61.111 | 0.00 | 0.00 | 37.67 | 3.41 |
1970 | 2766 | 2.347114 | CACTCCATGCCGGTGTCA | 59.653 | 61.111 | 1.90 | 0.00 | 39.53 | 3.58 |
2080 | 2888 | 8.694975 | ATCAGATACGTATGCATAATCAAGAC | 57.305 | 34.615 | 13.97 | 0.00 | 0.00 | 3.01 |
2088 | 2914 | 6.127647 | TGCATCAGATCAGATACGTATGCATA | 60.128 | 38.462 | 13.97 | 1.16 | 42.39 | 3.14 |
2116 | 2949 | 8.240682 | CGGAACCAAAATATACATGACAGAAAA | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2124 | 2957 | 6.811170 | AGCAAAACGGAACCAAAATATACATG | 59.189 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
2125 | 2958 | 6.930731 | AGCAAAACGGAACCAAAATATACAT | 58.069 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2141 | 2974 | 4.668576 | TCTAGCTGAATTGAGCAAAACG | 57.331 | 40.909 | 19.35 | 2.63 | 41.83 | 3.60 |
2294 | 3236 | 9.167311 | CTTACAGTTAGAAAAGATACCTTGCAT | 57.833 | 33.333 | 0.00 | 0.00 | 31.91 | 3.96 |
2327 | 3280 | 5.881923 | AGTTTCAGTACCTGTTTCCTGTA | 57.118 | 39.130 | 0.00 | 0.00 | 32.61 | 2.74 |
2339 | 3295 | 6.654161 | TGACAGTAGGAGACTAGTTTCAGTAC | 59.346 | 42.308 | 14.78 | 13.94 | 44.26 | 2.73 |
2417 | 3395 | 8.847444 | ATCACAAAGAATTCGCATAATCTTTC | 57.153 | 30.769 | 0.00 | 0.00 | 39.43 | 2.62 |
2453 | 3495 | 7.306399 | GCAACATGCTGCAAGATTACAATAATC | 60.306 | 37.037 | 16.08 | 1.07 | 42.17 | 1.75 |
2470 | 3512 | 4.630940 | CGGGAAATAAAAATGCAACATGCT | 59.369 | 37.500 | 3.78 | 0.00 | 45.31 | 3.79 |
2515 | 3699 | 6.267070 | ACACAACGTTAGTTAACCAAATTGG | 58.733 | 36.000 | 11.02 | 11.02 | 40.32 | 3.16 |
2520 | 3704 | 7.983307 | ACAATAACACAACGTTAGTTAACCAA | 58.017 | 30.769 | 21.76 | 8.04 | 43.26 | 3.67 |
2619 | 3928 | 0.242825 | TGTTGAACGCCGTCTCTAGG | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2725 | 4372 | 2.032860 | GCTCCTAGCATGCCGGAGAA | 62.033 | 60.000 | 38.18 | 16.59 | 45.67 | 2.87 |
2909 | 4562 | 7.015584 | TGAGTAGCTGCAAGAATAATGGATAGA | 59.984 | 37.037 | 4.12 | 0.00 | 34.07 | 1.98 |
2911 | 4564 | 7.066307 | TGAGTAGCTGCAAGAATAATGGATA | 57.934 | 36.000 | 4.12 | 0.00 | 34.07 | 2.59 |
2934 | 4587 | 8.875803 | ACACTGCATTGCAAAGATAAATAATTG | 58.124 | 29.630 | 13.18 | 0.00 | 38.41 | 2.32 |
3030 | 4690 | 2.969628 | ATGCCTACTATATCGCCTGC | 57.030 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3049 | 4709 | 8.044908 | GTCTTCCACTTTATCCCTGTTGTAATA | 58.955 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3068 | 4728 | 0.035317 | AACAGCGCTGATGTCTTCCA | 59.965 | 50.000 | 42.03 | 0.00 | 27.93 | 3.53 |
3113 | 4773 | 1.450312 | CGGGATGGTGCTTCTGGAC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
3187 | 4865 | 6.064717 | AGTTTGAAGAGCATAAACCTCAACT | 58.935 | 36.000 | 0.00 | 0.00 | 35.48 | 3.16 |
3259 | 4979 | 7.864882 | TCTGCAGATCGACAATCTAGAAATTAG | 59.135 | 37.037 | 13.74 | 0.00 | 43.13 | 1.73 |
3272 | 4992 | 2.159184 | GGATGTTCTCTGCAGATCGACA | 60.159 | 50.000 | 18.63 | 20.55 | 0.00 | 4.35 |
3293 | 5013 | 2.146342 | CAAGCCCAGAACTGTACACTG | 58.854 | 52.381 | 5.24 | 5.24 | 0.00 | 3.66 |
3294 | 5014 | 1.768870 | ACAAGCCCAGAACTGTACACT | 59.231 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
3295 | 5015 | 1.873591 | CACAAGCCCAGAACTGTACAC | 59.126 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
3296 | 5016 | 1.488812 | ACACAAGCCCAGAACTGTACA | 59.511 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
3302 | 5030 | 1.523758 | CAGGTACACAAGCCCAGAAC | 58.476 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3412 | 5990 | 6.886178 | TTCTGAATAAAGCCTAGTTACCCT | 57.114 | 37.500 | 0.00 | 0.00 | 0.00 | 4.34 |
3413 | 5991 | 7.773690 | TGATTTCTGAATAAAGCCTAGTTACCC | 59.226 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
3424 | 6004 | 8.397906 | TCCGCTTGTTATGATTTCTGAATAAAG | 58.602 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
3444 | 6024 | 4.460263 | TGGATATTGCTTGTATTCCGCTT | 58.540 | 39.130 | 0.00 | 0.00 | 0.00 | 4.68 |
3466 | 6046 | 1.342074 | TCTGTGCTAGGTGTTCTGCT | 58.658 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3474 | 6054 | 1.517832 | GTCGCCATCTGTGCTAGGT | 59.482 | 57.895 | 0.00 | 0.00 | 0.00 | 3.08 |
3479 | 6059 | 3.127533 | GTGGGTCGCCATCTGTGC | 61.128 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
3502 | 6084 | 5.036117 | TCTAGCAAAAGGAGTTGTGTCTT | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
3537 | 6121 | 9.988350 | TTGCGATTTGAGTTTAGAGAAAATATC | 57.012 | 29.630 | 0.00 | 0.00 | 0.00 | 1.63 |
3561 | 6145 | 9.088512 | ACTAGTAACTTCGCTTTCATAGATTTG | 57.911 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3628 | 6212 | 4.524328 | CACAAACATAAGGAAGGAGGCTTT | 59.476 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3633 | 6217 | 4.389077 | GTCGTCACAAACATAAGGAAGGAG | 59.611 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
3634 | 6218 | 4.312443 | GTCGTCACAAACATAAGGAAGGA | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
3635 | 6219 | 3.435671 | GGTCGTCACAAACATAAGGAAGG | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
3636 | 6220 | 4.315803 | AGGTCGTCACAAACATAAGGAAG | 58.684 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
3637 | 6221 | 4.312443 | GAGGTCGTCACAAACATAAGGAA | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
3638 | 6222 | 3.613193 | CGAGGTCGTCACAAACATAAGGA | 60.613 | 47.826 | 0.00 | 0.00 | 34.11 | 3.36 |
3659 | 6247 | 4.069232 | TTGCCTCGGACTGCCTCG | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3681 | 6269 | 8.356657 | ACACAAGATTTGAACATTCGGAATTAA | 58.643 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3718 | 6306 | 3.437795 | GCATGCTTGCTGCGAGGT | 61.438 | 61.111 | 18.18 | 0.00 | 45.77 | 3.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.