Multiple sequence alignment - TraesCS3A01G525300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G525300 chr3A 100.000 2633 0 0 1 2633 739544022 739546654 0.000000e+00 4863
1 TraesCS3A01G525300 chr3A 91.962 2003 61 32 1 1934 509545678 509547649 0.000000e+00 2715
2 TraesCS3A01G525300 chr3A 83.764 542 58 12 1932 2450 748419762 748420296 1.100000e-133 486
3 TraesCS3A01G525300 chr6A 93.867 1973 65 16 1 1934 507129588 507131543 0.000000e+00 2922
4 TraesCS3A01G525300 chr6A 90.226 1729 71 21 1 1702 560106533 560104876 0.000000e+00 2167
5 TraesCS3A01G525300 chr6A 89.823 1356 109 20 1 1345 62134130 62132793 0.000000e+00 1712
6 TraesCS3A01G525300 chr2A 92.661 1962 64 18 1 1932 136967668 136969579 0.000000e+00 2752
7 TraesCS3A01G525300 chr2A 96.307 1354 34 6 1 1345 718481282 718482628 0.000000e+00 2209
8 TraesCS3A01G525300 chr2A 91.738 1525 62 19 459 1934 104030659 104029150 0.000000e+00 2060
9 TraesCS3A01G525300 chr2A 92.889 1336 71 13 1 1327 685489635 685490955 0.000000e+00 1919
10 TraesCS3A01G525300 chr2A 88.897 1360 121 20 1 1345 698818356 698817012 0.000000e+00 1648
11 TraesCS3A01G525300 chr2A 88.327 1345 124 19 1 1331 715779726 715778401 0.000000e+00 1583
12 TraesCS3A01G525300 chr2A 86.846 669 35 20 1286 1930 718482617 718483256 0.000000e+00 699
13 TraesCS3A01G525300 chr2A 87.184 632 32 22 1336 1932 620729743 620730360 0.000000e+00 673
14 TraesCS3A01G525300 chr2A 82.684 693 56 22 1290 1931 758115751 758115072 8.230000e-155 556
15 TraesCS3A01G525300 chr5D 90.394 1801 87 21 1 1736 529803802 529802023 0.000000e+00 2289
16 TraesCS3A01G525300 chr5D 90.768 1744 88 19 1 1702 423273486 423275198 0.000000e+00 2261
17 TraesCS3A01G525300 chr5D 89.805 1334 106 19 1 1321 260844665 260843349 0.000000e+00 1683
18 TraesCS3A01G525300 chr5D 88.881 1358 114 22 1 1345 56906779 56908112 0.000000e+00 1637
19 TraesCS3A01G525300 chr5D 93.629 361 14 3 1342 1702 84380300 84379949 4.990000e-147 531
20 TraesCS3A01G525300 chrUn 89.308 1749 98 22 1 1702 23658307 23660013 0.000000e+00 2111
21 TraesCS3A01G525300 chrUn 85.572 603 34 21 1375 1939 150818591 150819178 1.360000e-162 582
22 TraesCS3A01G525300 chrUn 93.733 367 14 3 1336 1702 370576175 370576532 2.310000e-150 542
23 TraesCS3A01G525300 chrUn 81.703 634 59 24 1336 1932 131947091 131947704 2.370000e-130 475
24 TraesCS3A01G525300 chrUn 88.920 361 11 4 1342 1702 332492392 332492061 4.050000e-113 418
25 TraesCS3A01G525300 chrUn 88.920 361 11 4 1342 1702 396910130 396909799 4.050000e-113 418
26 TraesCS3A01G525300 chrUn 89.899 297 15 8 1406 1702 318019682 318019963 4.140000e-98 368
27 TraesCS3A01G525300 chrUn 79.873 472 48 19 1502 1934 474593680 474594143 4.260000e-78 302
28 TraesCS3A01G525300 chrUn 90.547 201 13 5 1502 1702 421370027 421370221 7.230000e-66 261
29 TraesCS3A01G525300 chrUn 74.908 271 52 12 1677 1932 309562337 309562068 2.770000e-20 110
30 TraesCS3A01G525300 chrUn 74.908 271 52 12 1677 1932 309578409 309578140 2.770000e-20 110
31 TraesCS3A01G525300 chr3B 93.967 1409 60 10 1 1395 811099774 811098377 0.000000e+00 2108
32 TraesCS3A01G525300 chr5A 94.170 1355 58 10 1 1345 32978513 32979856 0.000000e+00 2045
33 TraesCS3A01G525300 chr5A 87.708 602 36 17 1342 1932 599726793 599726219 0.000000e+00 667
34 TraesCS3A01G525300 chr7A 92.336 1357 65 12 1 1345 157598937 157597608 0.000000e+00 1893
35 TraesCS3A01G525300 chr7A 90.258 1355 102 16 1 1345 733522671 733524005 0.000000e+00 1744
36 TraesCS3A01G525300 chr7A 92.944 496 26 4 859 1345 282556610 282557105 0.000000e+00 713
37 TraesCS3A01G525300 chr7A 91.607 417 20 8 1286 1702 725890626 725891027 1.770000e-156 562
38 TraesCS3A01G525300 chr4D 89.132 1371 112 22 1 1353 498043926 498042575 0.000000e+00 1672
39 TraesCS3A01G525300 chr4D 88.433 1193 119 14 1 1192 351687164 351685990 0.000000e+00 1421
40 TraesCS3A01G525300 chr4D 87.340 861 54 25 884 1702 386141786 386142633 0.000000e+00 935
41 TraesCS3A01G525300 chr4D 93.733 367 14 3 1336 1702 93441080 93441437 2.310000e-150 542
42 TraesCS3A01G525300 chr4D 92.643 367 17 4 1336 1702 467822197 467821841 1.080000e-143 520
43 TraesCS3A01G525300 chr4D 92.708 96 7 0 1607 1702 434278836 434278741 3.530000e-29 139
44 TraesCS3A01G525300 chr2B 86.347 1333 148 22 1 1321 160751337 160750027 0.000000e+00 1423
45 TraesCS3A01G525300 chr2B 88.248 468 33 10 1336 1799 753692611 753693060 8.290000e-150 540
46 TraesCS3A01G525300 chr2D 84.900 1351 164 25 1 1332 444367081 444368410 0.000000e+00 1328
47 TraesCS3A01G525300 chr2D 86.950 636 29 16 1342 1932 572790744 572790118 0.000000e+00 665
48 TraesCS3A01G525300 chr2D 86.491 644 33 22 1336 1934 73206058 73206692 0.000000e+00 658
49 TraesCS3A01G525300 chr2D 85.557 637 36 21 1342 1931 30185902 30185275 1.340000e-172 616
50 TraesCS3A01G525300 chr2D 85.906 596 45 15 1329 1900 155508684 155508104 1.350000e-167 599
51 TraesCS3A01G525300 chr4A 87.874 602 39 17 1336 1932 684300067 684300639 0.000000e+00 676
52 TraesCS3A01G525300 chr6D 85.648 648 33 21 1342 1940 451666253 451665617 6.190000e-176 627
53 TraesCS3A01G525300 chr6D 94.183 361 12 3 1342 1702 324750180 324749829 2.310000e-150 542
54 TraesCS3A01G525300 chr1A 83.333 696 44 34 1290 1932 499977818 499978494 6.320000e-161 577
55 TraesCS3A01G525300 chr3D 94.737 361 10 3 1342 1702 80218430 80218079 1.060000e-153 553
56 TraesCS3A01G525300 chr3D 91.935 372 18 4 1365 1736 31845381 31845740 6.500000e-141 510
57 TraesCS3A01G525300 chr3D 97.015 201 6 0 1502 1702 602048915 602049115 3.250000e-89 339
58 TraesCS3A01G525300 chr3D 92.391 184 7 5 2455 2632 607081968 607082150 3.360000e-64 255
59 TraesCS3A01G525300 chr4B 83.599 628 51 23 1337 1932 465750369 465750976 2.310000e-150 542
60 TraesCS3A01G525300 chr4B 88.030 401 31 11 1336 1735 562344370 562343986 2.390000e-125 459
61 TraesCS3A01G525300 chr1B 90.796 402 23 6 1336 1736 121401969 121402357 2.320000e-145 525
62 TraesCS3A01G525300 chr7D 91.029 379 12 6 1359 1736 544989299 544988942 2.350000e-135 492
63 TraesCS3A01G525300 chr1D 86.634 404 30 12 1336 1735 473348918 473349301 2.420000e-115 425
64 TraesCS3A01G525300 chr1D 94.030 201 6 3 1502 1702 395349725 395349531 1.530000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G525300 chr3A 739544022 739546654 2632 False 4863 4863 100.0000 1 2633 1 chr3A.!!$F2 2632
1 TraesCS3A01G525300 chr3A 509545678 509547649 1971 False 2715 2715 91.9620 1 1934 1 chr3A.!!$F1 1933
2 TraesCS3A01G525300 chr3A 748419762 748420296 534 False 486 486 83.7640 1932 2450 1 chr3A.!!$F3 518
3 TraesCS3A01G525300 chr6A 507129588 507131543 1955 False 2922 2922 93.8670 1 1934 1 chr6A.!!$F1 1933
4 TraesCS3A01G525300 chr6A 560104876 560106533 1657 True 2167 2167 90.2260 1 1702 1 chr6A.!!$R2 1701
5 TraesCS3A01G525300 chr6A 62132793 62134130 1337 True 1712 1712 89.8230 1 1345 1 chr6A.!!$R1 1344
6 TraesCS3A01G525300 chr2A 136967668 136969579 1911 False 2752 2752 92.6610 1 1932 1 chr2A.!!$F1 1931
7 TraesCS3A01G525300 chr2A 104029150 104030659 1509 True 2060 2060 91.7380 459 1934 1 chr2A.!!$R1 1475
8 TraesCS3A01G525300 chr2A 685489635 685490955 1320 False 1919 1919 92.8890 1 1327 1 chr2A.!!$F3 1326
9 TraesCS3A01G525300 chr2A 698817012 698818356 1344 True 1648 1648 88.8970 1 1345 1 chr2A.!!$R2 1344
10 TraesCS3A01G525300 chr2A 715778401 715779726 1325 True 1583 1583 88.3270 1 1331 1 chr2A.!!$R3 1330
11 TraesCS3A01G525300 chr2A 718481282 718483256 1974 False 1454 2209 91.5765 1 1930 2 chr2A.!!$F4 1929
12 TraesCS3A01G525300 chr2A 620729743 620730360 617 False 673 673 87.1840 1336 1932 1 chr2A.!!$F2 596
13 TraesCS3A01G525300 chr2A 758115072 758115751 679 True 556 556 82.6840 1290 1931 1 chr2A.!!$R4 641
14 TraesCS3A01G525300 chr5D 529802023 529803802 1779 True 2289 2289 90.3940 1 1736 1 chr5D.!!$R3 1735
15 TraesCS3A01G525300 chr5D 423273486 423275198 1712 False 2261 2261 90.7680 1 1702 1 chr5D.!!$F2 1701
16 TraesCS3A01G525300 chr5D 260843349 260844665 1316 True 1683 1683 89.8050 1 1321 1 chr5D.!!$R2 1320
17 TraesCS3A01G525300 chr5D 56906779 56908112 1333 False 1637 1637 88.8810 1 1345 1 chr5D.!!$F1 1344
18 TraesCS3A01G525300 chrUn 23658307 23660013 1706 False 2111 2111 89.3080 1 1702 1 chrUn.!!$F1 1701
19 TraesCS3A01G525300 chrUn 150818591 150819178 587 False 582 582 85.5720 1375 1939 1 chrUn.!!$F3 564
20 TraesCS3A01G525300 chrUn 131947091 131947704 613 False 475 475 81.7030 1336 1932 1 chrUn.!!$F2 596
21 TraesCS3A01G525300 chr3B 811098377 811099774 1397 True 2108 2108 93.9670 1 1395 1 chr3B.!!$R1 1394
22 TraesCS3A01G525300 chr5A 32978513 32979856 1343 False 2045 2045 94.1700 1 1345 1 chr5A.!!$F1 1344
23 TraesCS3A01G525300 chr5A 599726219 599726793 574 True 667 667 87.7080 1342 1932 1 chr5A.!!$R1 590
24 TraesCS3A01G525300 chr7A 157597608 157598937 1329 True 1893 1893 92.3360 1 1345 1 chr7A.!!$R1 1344
25 TraesCS3A01G525300 chr7A 733522671 733524005 1334 False 1744 1744 90.2580 1 1345 1 chr7A.!!$F3 1344
26 TraesCS3A01G525300 chr4D 498042575 498043926 1351 True 1672 1672 89.1320 1 1353 1 chr4D.!!$R4 1352
27 TraesCS3A01G525300 chr4D 351685990 351687164 1174 True 1421 1421 88.4330 1 1192 1 chr4D.!!$R1 1191
28 TraesCS3A01G525300 chr4D 386141786 386142633 847 False 935 935 87.3400 884 1702 1 chr4D.!!$F2 818
29 TraesCS3A01G525300 chr2B 160750027 160751337 1310 True 1423 1423 86.3470 1 1321 1 chr2B.!!$R1 1320
30 TraesCS3A01G525300 chr2D 444367081 444368410 1329 False 1328 1328 84.9000 1 1332 1 chr2D.!!$F2 1331
31 TraesCS3A01G525300 chr2D 572790118 572790744 626 True 665 665 86.9500 1342 1932 1 chr2D.!!$R3 590
32 TraesCS3A01G525300 chr2D 73206058 73206692 634 False 658 658 86.4910 1336 1934 1 chr2D.!!$F1 598
33 TraesCS3A01G525300 chr2D 30185275 30185902 627 True 616 616 85.5570 1342 1931 1 chr2D.!!$R1 589
34 TraesCS3A01G525300 chr2D 155508104 155508684 580 True 599 599 85.9060 1329 1900 1 chr2D.!!$R2 571
35 TraesCS3A01G525300 chr4A 684300067 684300639 572 False 676 676 87.8740 1336 1932 1 chr4A.!!$F1 596
36 TraesCS3A01G525300 chr6D 451665617 451666253 636 True 627 627 85.6480 1342 1940 1 chr6D.!!$R2 598
37 TraesCS3A01G525300 chr1A 499977818 499978494 676 False 577 577 83.3330 1290 1932 1 chr1A.!!$F1 642
38 TraesCS3A01G525300 chr4B 465750369 465750976 607 False 542 542 83.5990 1337 1932 1 chr4B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 267 0.039437 TGAGTTCGAAGTGGACGAGC 60.039 55.0 10.94 0.0 40.72 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2557 0.110238 CACATCGCCCAGTTTTGACG 60.11 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 220 2.489329 CCAACAATTCGCATTGGTCTCT 59.511 45.455 12.39 0.00 43.82 3.10
258 267 0.039437 TGAGTTCGAAGTGGACGAGC 60.039 55.000 10.94 0.00 40.72 5.03
309 318 1.369091 AAGAGCGGGCAATTACAGCG 61.369 55.000 0.00 0.00 0.00 5.18
737 756 4.609301 AGGGTATTTGCTTTGCCTCATTA 58.391 39.130 0.00 0.00 0.00 1.90
840 868 8.585471 AGTGAACAATTAAGTTGGATGATGAT 57.415 30.769 0.00 0.00 42.28 2.45
841 869 9.028284 AGTGAACAATTAAGTTGGATGATGATT 57.972 29.630 0.00 0.00 42.28 2.57
1007 1048 5.255687 TGAGCTCAAAAATGCTATGGAAGA 58.744 37.500 15.67 0.00 39.91 2.87
1056 1097 2.892852 CAAGGTGAGGAAAATGGCAAGA 59.107 45.455 0.00 0.00 0.00 3.02
1218 1280 7.173907 CACTTGTTCTTCTTGGACACATCTAAT 59.826 37.037 0.00 0.00 0.00 1.73
1388 1584 1.540166 CCACCATGGGAGGCATGAT 59.460 57.895 18.09 0.00 32.67 2.45
1490 1690 1.031571 TCCCATGAAGATGCCGTTGC 61.032 55.000 0.00 0.00 38.26 4.17
1519 1719 0.948623 CGATCTTGCCAACACCGTCA 60.949 55.000 0.00 0.00 0.00 4.35
1704 1956 1.327303 TGAACTTGTGGGCATGAACC 58.673 50.000 0.00 0.00 0.00 3.62
1839 2216 0.536233 TTTTAGCGTGGCTGCTGGAA 60.536 50.000 13.83 6.88 46.70 3.53
1951 2328 8.158169 TGCTCTTATGATGAACCATATTTCAC 57.842 34.615 0.00 0.00 38.31 3.18
1953 2330 9.494271 GCTCTTATGATGAACCATATTTCACTA 57.506 33.333 0.00 0.00 38.31 2.74
1986 2363 2.279582 AAGGCTCACGTTGATCTACG 57.720 50.000 24.73 24.73 46.52 3.51
2002 2379 6.931838 TGATCTACGTACAAAAGGAACATCT 58.068 36.000 0.00 0.00 0.00 2.90
2018 2395 6.234177 GGAACATCTCCTGGTATAGATTTGG 58.766 44.000 0.00 0.00 41.61 3.28
2020 2397 7.256835 GGAACATCTCCTGGTATAGATTTGGAT 60.257 40.741 0.00 0.00 41.61 3.41
2025 2402 6.156949 TCTCCTGGTATAGATTTGGATATGGC 59.843 42.308 0.00 0.00 0.00 4.40
2027 2404 6.448061 TCCTGGTATAGATTTGGATATGGCAT 59.552 38.462 4.88 4.88 0.00 4.40
2036 2413 2.287769 TGGATATGGCATGACAACACG 58.712 47.619 4.70 0.00 0.00 4.49
2052 2429 3.685139 ACACGAGTTGGATGACATCTT 57.315 42.857 14.95 0.00 0.00 2.40
2057 2434 3.801050 CGAGTTGGATGACATCTTAGCTG 59.199 47.826 14.95 0.00 0.00 4.24
2074 2451 2.623416 AGCTGCCTTGTCTAAACAAACC 59.377 45.455 0.00 0.00 44.53 3.27
2075 2452 2.360801 GCTGCCTTGTCTAAACAAACCA 59.639 45.455 0.00 0.00 44.53 3.67
2079 2457 4.226761 GCCTTGTCTAAACAAACCAATCG 58.773 43.478 0.00 0.00 44.53 3.34
2081 2459 5.689819 CCTTGTCTAAACAAACCAATCGAG 58.310 41.667 0.00 0.00 44.53 4.04
2132 2510 0.109039 GTGCTCGGGTGAGAAGAGTC 60.109 60.000 0.00 0.00 45.57 3.36
2133 2511 1.137825 GCTCGGGTGAGAAGAGTCG 59.862 63.158 0.00 0.00 45.57 4.18
2175 2557 1.972640 CATCGCATCTACATCGTCGAC 59.027 52.381 5.18 5.18 0.00 4.20
2179 2561 1.267882 GCATCTACATCGTCGACGTCA 60.268 52.381 34.40 19.34 40.80 4.35
2182 2564 3.541071 TCTACATCGTCGACGTCAAAA 57.459 42.857 34.40 17.81 40.80 2.44
2184 2566 2.129823 ACATCGTCGACGTCAAAACT 57.870 45.000 34.40 10.81 40.80 2.66
2225 2610 1.162181 ATTGGCCACGCGATCATCAG 61.162 55.000 15.93 0.00 0.00 2.90
2226 2611 2.106938 GGCCACGCGATCATCAGA 59.893 61.111 15.93 0.00 0.00 3.27
2231 2616 2.346847 GCCACGCGATCATCAGAATATC 59.653 50.000 15.93 0.00 0.00 1.63
2232 2617 3.842820 CCACGCGATCATCAGAATATCT 58.157 45.455 15.93 0.00 0.00 1.98
2233 2618 3.856521 CCACGCGATCATCAGAATATCTC 59.143 47.826 15.93 0.00 0.00 2.75
2236 2621 4.027724 CGCGATCATCAGAATATCTCTCG 58.972 47.826 0.00 0.00 29.07 4.04
2250 2635 3.314541 TCTCTCGACTTGGTTTTAGCC 57.685 47.619 0.00 0.00 0.00 3.93
2254 2639 0.515564 CGACTTGGTTTTAGCCGTGG 59.484 55.000 0.00 0.00 0.00 4.94
2263 2648 1.519408 TTTAGCCGTGGAGAGTTTGC 58.481 50.000 0.00 0.00 0.00 3.68
2276 2661 1.396301 GAGTTTGCGCTCTTGGAGATG 59.604 52.381 9.73 0.00 32.99 2.90
2295 2680 1.357420 TGGATTGGCCAGCCTTCTTAA 59.643 47.619 22.74 0.00 43.33 1.85
2296 2681 2.024080 TGGATTGGCCAGCCTTCTTAAT 60.024 45.455 22.74 4.52 43.33 1.40
2297 2682 3.033909 GGATTGGCCAGCCTTCTTAATT 58.966 45.455 17.10 0.00 36.94 1.40
2298 2683 4.215109 GGATTGGCCAGCCTTCTTAATTA 58.785 43.478 17.10 0.00 36.94 1.40
2299 2684 4.279420 GGATTGGCCAGCCTTCTTAATTAG 59.721 45.833 17.10 0.00 36.94 1.73
2300 2685 4.316025 TTGGCCAGCCTTCTTAATTAGT 57.684 40.909 5.11 0.00 36.94 2.24
2301 2686 4.316025 TGGCCAGCCTTCTTAATTAGTT 57.684 40.909 0.00 0.00 36.94 2.24
2319 2704 8.943909 AATTAGTTTCTCGGTTTGGTATAGAG 57.056 34.615 0.00 0.00 0.00 2.43
2329 2714 9.976511 CTCGGTTTGGTATAGAGAAATAATGTA 57.023 33.333 0.00 0.00 0.00 2.29
2450 2849 4.151943 ACCTAGATGGATGGATGATGGA 57.848 45.455 0.00 0.00 39.71 3.41
2451 2850 4.707724 ACCTAGATGGATGGATGATGGAT 58.292 43.478 0.00 0.00 39.71 3.41
2452 2851 4.473922 ACCTAGATGGATGGATGATGGATG 59.526 45.833 0.00 0.00 39.71 3.51
2453 2852 4.141459 CCTAGATGGATGGATGATGGATGG 60.141 50.000 0.00 0.00 38.35 3.51
2454 2853 2.581246 AGATGGATGGATGATGGATGGG 59.419 50.000 0.00 0.00 0.00 4.00
2455 2854 1.837252 TGGATGGATGATGGATGGGT 58.163 50.000 0.00 0.00 0.00 4.51
2456 2855 2.146147 TGGATGGATGATGGATGGGTT 58.854 47.619 0.00 0.00 0.00 4.11
2457 2856 2.158430 TGGATGGATGATGGATGGGTTG 60.158 50.000 0.00 0.00 0.00 3.77
2458 2857 2.522185 GATGGATGATGGATGGGTTGG 58.478 52.381 0.00 0.00 0.00 3.77
2459 2858 1.606026 TGGATGATGGATGGGTTGGA 58.394 50.000 0.00 0.00 0.00 3.53
2460 2859 1.928785 TGGATGATGGATGGGTTGGAA 59.071 47.619 0.00 0.00 0.00 3.53
2461 2860 2.314247 TGGATGATGGATGGGTTGGAAA 59.686 45.455 0.00 0.00 0.00 3.13
2491 2890 9.614792 ATTAGGTTAATGAAGATCAAGTGTACC 57.385 33.333 0.00 0.00 0.00 3.34
2492 2891 7.259088 AGGTTAATGAAGATCAAGTGTACCT 57.741 36.000 0.00 0.00 0.00 3.08
2493 2892 8.375493 AGGTTAATGAAGATCAAGTGTACCTA 57.625 34.615 0.00 0.00 0.00 3.08
2494 2893 8.478877 AGGTTAATGAAGATCAAGTGTACCTAG 58.521 37.037 0.00 0.00 0.00 3.02
2495 2894 8.475639 GGTTAATGAAGATCAAGTGTACCTAGA 58.524 37.037 0.00 0.00 0.00 2.43
2498 2897 5.907207 TGAAGATCAAGTGTACCTAGATGC 58.093 41.667 0.00 0.00 0.00 3.91
2499 2898 5.422012 TGAAGATCAAGTGTACCTAGATGCA 59.578 40.000 0.00 0.00 0.00 3.96
2500 2899 6.098838 TGAAGATCAAGTGTACCTAGATGCAT 59.901 38.462 0.00 0.00 0.00 3.96
2501 2900 7.287696 TGAAGATCAAGTGTACCTAGATGCATA 59.712 37.037 0.00 0.00 0.00 3.14
2502 2901 7.225784 AGATCAAGTGTACCTAGATGCATAG 57.774 40.000 0.00 0.00 0.00 2.23
2503 2902 7.007116 AGATCAAGTGTACCTAGATGCATAGA 58.993 38.462 0.00 0.00 0.00 1.98
2504 2903 7.673504 AGATCAAGTGTACCTAGATGCATAGAT 59.326 37.037 0.00 0.00 0.00 1.98
2505 2904 6.986250 TCAAGTGTACCTAGATGCATAGATG 58.014 40.000 0.00 0.00 0.00 2.90
2524 2923 9.696917 CATAGATGCATAGTTTAGTGTCATACA 57.303 33.333 0.00 0.00 0.00 2.29
2527 2926 9.618890 AGATGCATAGTTTAGTGTCATACAATT 57.381 29.630 0.00 0.00 0.00 2.32
2533 2932 9.899661 ATAGTTTAGTGTCATACAATTTAGGCA 57.100 29.630 0.00 0.00 0.00 4.75
2534 2933 8.040716 AGTTTAGTGTCATACAATTTAGGCAC 57.959 34.615 0.00 0.00 0.00 5.01
2535 2934 7.663905 AGTTTAGTGTCATACAATTTAGGCACA 59.336 33.333 0.00 0.00 0.00 4.57
2536 2935 8.458843 GTTTAGTGTCATACAATTTAGGCACAT 58.541 33.333 0.00 0.00 0.00 3.21
2537 2936 6.441093 AGTGTCATACAATTTAGGCACATG 57.559 37.500 0.00 0.00 0.00 3.21
2538 2937 5.945784 AGTGTCATACAATTTAGGCACATGT 59.054 36.000 0.00 0.00 0.00 3.21
2539 2938 6.434028 AGTGTCATACAATTTAGGCACATGTT 59.566 34.615 0.00 0.00 0.00 2.71
2540 2939 7.039784 AGTGTCATACAATTTAGGCACATGTTT 60.040 33.333 0.00 0.00 0.00 2.83
2541 2940 7.062138 GTGTCATACAATTTAGGCACATGTTTG 59.938 37.037 0.00 0.00 0.00 2.93
2542 2941 7.040132 TGTCATACAATTTAGGCACATGTTTGA 60.040 33.333 10.36 0.00 32.25 2.69
2543 2942 7.485913 GTCATACAATTTAGGCACATGTTTGAG 59.514 37.037 10.36 0.00 34.31 3.02
2544 2943 5.138125 ACAATTTAGGCACATGTTTGAGG 57.862 39.130 10.36 0.00 0.00 3.86
2545 2944 4.832266 ACAATTTAGGCACATGTTTGAGGA 59.168 37.500 10.36 0.00 0.00 3.71
2546 2945 5.481473 ACAATTTAGGCACATGTTTGAGGAT 59.519 36.000 10.36 0.00 0.00 3.24
2547 2946 5.841957 ATTTAGGCACATGTTTGAGGATC 57.158 39.130 0.00 0.00 0.00 3.36
2601 3000 8.723942 AAAGATCAAATGTACTTACCTAGCTG 57.276 34.615 0.00 0.00 0.00 4.24
2602 3001 6.284459 AGATCAAATGTACTTACCTAGCTGC 58.716 40.000 0.00 0.00 0.00 5.25
2603 3002 5.414789 TCAAATGTACTTACCTAGCTGCA 57.585 39.130 1.02 0.00 0.00 4.41
2604 3003 5.989477 TCAAATGTACTTACCTAGCTGCAT 58.011 37.500 1.02 0.00 0.00 3.96
2605 3004 5.817296 TCAAATGTACTTACCTAGCTGCATG 59.183 40.000 1.02 0.00 0.00 4.06
2606 3005 3.819564 TGTACTTACCTAGCTGCATGG 57.180 47.619 1.02 5.88 0.00 3.66
2607 3006 3.371034 TGTACTTACCTAGCTGCATGGA 58.629 45.455 15.93 0.00 0.00 3.41
2608 3007 2.990066 ACTTACCTAGCTGCATGGAC 57.010 50.000 15.93 0.00 0.00 4.02
2609 3008 2.187958 ACTTACCTAGCTGCATGGACA 58.812 47.619 15.93 2.92 0.00 4.02
2610 3009 2.093447 ACTTACCTAGCTGCATGGACAC 60.093 50.000 15.93 0.00 0.00 3.67
2611 3010 1.567357 TACCTAGCTGCATGGACACA 58.433 50.000 15.93 0.00 0.00 3.72
2612 3011 0.914644 ACCTAGCTGCATGGACACAT 59.085 50.000 15.93 0.00 37.99 3.21
2628 3027 8.821686 ATGGACACATGTTTAAGGATCAATAA 57.178 30.769 0.00 0.00 35.57 1.40
2629 3028 8.642935 TGGACACATGTTTAAGGATCAATAAA 57.357 30.769 0.00 0.00 0.00 1.40
2630 3029 9.083422 TGGACACATGTTTAAGGATCAATAAAA 57.917 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 148 7.255491 TGCATCATCATTGAGACTACAAATC 57.745 36.000 0.00 0.00 34.73 2.17
211 220 2.757314 TCGAAATGCATGCCATTGGTTA 59.243 40.909 16.68 0.00 43.22 2.85
220 229 3.252400 TCATGGTTTTCGAAATGCATGC 58.748 40.909 12.12 11.82 0.00 4.06
258 267 0.758734 TCGATAATGCCCTCACCCTG 59.241 55.000 0.00 0.00 0.00 4.45
309 318 2.493713 AGTAAGATGTCATCGGCGTC 57.506 50.000 6.85 0.00 0.00 5.19
737 756 6.950842 TCATCATCCTTCAACACTTCATAGT 58.049 36.000 0.00 0.00 34.00 2.12
840 868 7.499232 GCATCATCCTCATCATCATCATCATAA 59.501 37.037 0.00 0.00 0.00 1.90
841 869 6.992715 GCATCATCCTCATCATCATCATCATA 59.007 38.462 0.00 0.00 0.00 2.15
842 870 5.825151 GCATCATCCTCATCATCATCATCAT 59.175 40.000 0.00 0.00 0.00 2.45
843 871 5.186198 GCATCATCCTCATCATCATCATCA 58.814 41.667 0.00 0.00 0.00 3.07
844 872 5.186198 TGCATCATCCTCATCATCATCATC 58.814 41.667 0.00 0.00 0.00 2.92
845 873 5.179452 TGCATCATCCTCATCATCATCAT 57.821 39.130 0.00 0.00 0.00 2.45
1007 1048 5.525012 GCTTCTTTTCTTGCCTTCACAATTT 59.475 36.000 0.00 0.00 0.00 1.82
1056 1097 3.747976 GCCGCGGCATCTTGGTTT 61.748 61.111 43.55 0.00 41.49 3.27
1218 1280 5.670485 AGATTGACATACTCCATTTGCGTA 58.330 37.500 0.00 0.00 0.00 4.42
1388 1584 3.424703 CCTCCCATGAGAGAAGCAAAAA 58.575 45.455 5.69 0.00 41.42 1.94
1499 1699 1.635663 GACGGTGTTGGCAAGATCGG 61.636 60.000 29.77 14.60 0.00 4.18
1500 1700 0.948623 TGACGGTGTTGGCAAGATCG 60.949 55.000 25.97 25.97 0.00 3.69
1501 1701 0.798776 CTGACGGTGTTGGCAAGATC 59.201 55.000 0.00 0.00 0.00 2.75
1502 1702 0.396435 TCTGACGGTGTTGGCAAGAT 59.604 50.000 0.00 0.00 0.00 2.40
1503 1703 0.249868 CTCTGACGGTGTTGGCAAGA 60.250 55.000 0.00 0.00 0.00 3.02
1504 1704 1.845809 GCTCTGACGGTGTTGGCAAG 61.846 60.000 0.00 0.00 0.00 4.01
1505 1705 1.891919 GCTCTGACGGTGTTGGCAA 60.892 57.895 0.00 0.00 0.00 4.52
1506 1706 2.280797 GCTCTGACGGTGTTGGCA 60.281 61.111 0.00 0.00 0.00 4.92
1507 1707 1.569479 GAAGCTCTGACGGTGTTGGC 61.569 60.000 0.00 0.00 0.00 4.52
1519 1719 1.446792 CCGCATCACGTGAAGCTCT 60.447 57.895 34.46 13.00 41.42 4.09
1976 2353 6.774354 TGTTCCTTTTGTACGTAGATCAAC 57.226 37.500 0.00 0.00 0.00 3.18
1997 2374 8.766476 CATATCCAAATCTATACCAGGAGATGT 58.234 37.037 0.00 0.00 39.04 3.06
2002 2379 5.790096 TGCCATATCCAAATCTATACCAGGA 59.210 40.000 0.00 0.00 0.00 3.86
2007 2384 8.454106 GTTGTCATGCCATATCCAAATCTATAC 58.546 37.037 0.00 0.00 0.00 1.47
2010 2387 6.262944 GTGTTGTCATGCCATATCCAAATCTA 59.737 38.462 0.00 0.00 0.00 1.98
2015 2392 2.682352 CGTGTTGTCATGCCATATCCAA 59.318 45.455 0.00 0.00 0.00 3.53
2018 2395 3.198068 ACTCGTGTTGTCATGCCATATC 58.802 45.455 0.00 0.00 0.00 1.63
2020 2397 2.741517 CAACTCGTGTTGTCATGCCATA 59.258 45.455 19.55 0.00 46.08 2.74
2036 2413 3.559242 GCAGCTAAGATGTCATCCAACTC 59.441 47.826 9.29 0.00 0.00 3.01
2048 2425 5.165961 TGTTTAGACAAGGCAGCTAAGAT 57.834 39.130 0.00 0.00 31.49 2.40
2052 2429 3.818773 GGTTTGTTTAGACAAGGCAGCTA 59.181 43.478 0.00 0.00 45.80 3.32
2057 2434 4.023536 TCGATTGGTTTGTTTAGACAAGGC 60.024 41.667 0.00 0.00 45.80 4.35
2074 2451 4.937620 TCAGTCCCAATTTTCTCTCGATTG 59.062 41.667 0.00 0.00 0.00 2.67
2075 2452 5.165961 TCAGTCCCAATTTTCTCTCGATT 57.834 39.130 0.00 0.00 0.00 3.34
2079 2457 4.520492 TGCTTTCAGTCCCAATTTTCTCTC 59.480 41.667 0.00 0.00 0.00 3.20
2081 2459 4.037923 TGTGCTTTCAGTCCCAATTTTCTC 59.962 41.667 0.00 0.00 0.00 2.87
2091 2469 5.065218 CACCAGTATAATGTGCTTTCAGTCC 59.935 44.000 0.00 0.00 0.00 3.85
2116 2494 1.137825 GCGACTCTTCTCACCCGAG 59.862 63.158 0.00 0.00 40.98 4.63
2118 2496 1.444553 GTGCGACTCTTCTCACCCG 60.445 63.158 0.00 0.00 32.20 5.28
2133 2511 2.969443 AGTTGTAACGAGCAATGTGC 57.031 45.000 0.00 0.00 45.46 4.57
2175 2557 0.110238 CACATCGCCCAGTTTTGACG 60.110 55.000 0.00 0.00 0.00 4.35
2179 2561 1.577328 CTCGCACATCGCCCAGTTTT 61.577 55.000 0.00 0.00 37.30 2.43
2182 2564 1.391933 TATCTCGCACATCGCCCAGT 61.392 55.000 0.00 0.00 37.30 4.00
2184 2566 0.392706 ATTATCTCGCACATCGCCCA 59.607 50.000 0.00 0.00 37.30 5.36
2215 2600 5.027737 GTCGAGAGATATTCTGATGATCGC 58.972 45.833 0.00 0.00 45.19 4.58
2225 2610 6.201234 GGCTAAAACCAAGTCGAGAGATATTC 59.799 42.308 0.00 0.00 45.19 1.75
2226 2611 6.049790 GGCTAAAACCAAGTCGAGAGATATT 58.950 40.000 0.00 0.00 45.19 1.28
2231 2616 1.993370 CGGCTAAAACCAAGTCGAGAG 59.007 52.381 0.00 0.00 44.64 3.20
2232 2617 1.342174 ACGGCTAAAACCAAGTCGAGA 59.658 47.619 3.90 0.00 44.64 4.04
2233 2618 1.459592 CACGGCTAAAACCAAGTCGAG 59.540 52.381 3.90 0.00 44.64 4.04
2236 2621 1.804748 CTCCACGGCTAAAACCAAGTC 59.195 52.381 0.00 0.00 0.00 3.01
2250 2635 0.946221 AAGAGCGCAAACTCTCCACG 60.946 55.000 11.47 0.00 46.38 4.94
2254 2639 1.074752 CTCCAAGAGCGCAAACTCTC 58.925 55.000 11.47 0.00 46.38 3.20
2263 2648 1.590932 CCAATCCATCTCCAAGAGCG 58.409 55.000 0.00 0.00 0.00 5.03
2276 2661 2.143876 TTAAGAAGGCTGGCCAATCC 57.856 50.000 7.01 11.54 38.92 3.01
2295 2680 8.302515 TCTCTATACCAAACCGAGAAACTAAT 57.697 34.615 0.00 0.00 0.00 1.73
2296 2681 7.707624 TCTCTATACCAAACCGAGAAACTAA 57.292 36.000 0.00 0.00 0.00 2.24
2297 2682 7.707624 TTCTCTATACCAAACCGAGAAACTA 57.292 36.000 0.00 0.00 37.67 2.24
2298 2683 6.600882 TTCTCTATACCAAACCGAGAAACT 57.399 37.500 0.00 0.00 37.67 2.66
2299 2684 7.845066 ATTTCTCTATACCAAACCGAGAAAC 57.155 36.000 13.07 0.00 46.90 2.78
2301 2686 9.542462 CATTATTTCTCTATACCAAACCGAGAA 57.458 33.333 0.00 0.00 38.53 2.87
2368 2753 3.403624 TGGCATGTCCAGGGAGTC 58.596 61.111 4.93 0.00 40.72 3.36
2428 2827 5.289652 TCCATCATCCATCCATCTAGGTA 57.710 43.478 0.00 0.00 39.02 3.08
2430 2829 4.141459 CCATCCATCATCCATCCATCTAGG 60.141 50.000 0.00 0.00 39.47 3.02
2438 2837 2.108776 TCCAACCCATCCATCATCCATC 59.891 50.000 0.00 0.00 0.00 3.51
2450 2849 8.923270 CATTAACCTAATATGTTTCCAACCCAT 58.077 33.333 0.00 0.00 0.00 4.00
2451 2850 8.116669 TCATTAACCTAATATGTTTCCAACCCA 58.883 33.333 0.00 0.00 0.00 4.51
2452 2851 8.528044 TCATTAACCTAATATGTTTCCAACCC 57.472 34.615 0.00 0.00 0.00 4.11
2465 2864 9.614792 GGTACACTTGATCTTCATTAACCTAAT 57.385 33.333 0.00 0.00 0.00 1.73
2466 2865 8.822805 AGGTACACTTGATCTTCATTAACCTAA 58.177 33.333 0.00 0.00 30.92 2.69
2467 2866 8.375493 AGGTACACTTGATCTTCATTAACCTA 57.625 34.615 0.00 0.00 30.92 3.08
2468 2867 7.259088 AGGTACACTTGATCTTCATTAACCT 57.741 36.000 0.00 0.00 0.00 3.50
2469 2868 8.475639 TCTAGGTACACTTGATCTTCATTAACC 58.524 37.037 0.00 0.00 0.00 2.85
2472 2871 8.144478 GCATCTAGGTACACTTGATCTTCATTA 58.856 37.037 0.00 0.00 39.21 1.90
2473 2872 6.989169 GCATCTAGGTACACTTGATCTTCATT 59.011 38.462 0.00 0.00 39.21 2.57
2474 2873 6.098838 TGCATCTAGGTACACTTGATCTTCAT 59.901 38.462 0.00 0.00 39.21 2.57
2475 2874 5.422012 TGCATCTAGGTACACTTGATCTTCA 59.578 40.000 0.00 0.00 39.21 3.02
2476 2875 5.907207 TGCATCTAGGTACACTTGATCTTC 58.093 41.667 0.00 0.00 39.21 2.87
2477 2876 5.939764 TGCATCTAGGTACACTTGATCTT 57.060 39.130 0.00 0.00 39.21 2.40
2478 2877 7.007116 TCTATGCATCTAGGTACACTTGATCT 58.993 38.462 0.19 0.00 39.21 2.75
2479 2878 7.220741 TCTATGCATCTAGGTACACTTGATC 57.779 40.000 0.19 0.00 39.21 2.92
2480 2879 7.609960 CATCTATGCATCTAGGTACACTTGAT 58.390 38.462 0.19 0.00 41.41 2.57
2481 2880 6.986250 CATCTATGCATCTAGGTACACTTGA 58.014 40.000 0.19 0.00 35.47 3.02
2498 2897 9.696917 TGTATGACACTAAACTATGCATCTATG 57.303 33.333 0.19 0.00 0.00 2.23
2501 2900 9.618890 AATTGTATGACACTAAACTATGCATCT 57.381 29.630 0.19 0.00 0.00 2.90
2507 2906 9.899661 TGCCTAAATTGTATGACACTAAACTAT 57.100 29.630 0.00 0.00 0.00 2.12
2508 2907 9.158233 GTGCCTAAATTGTATGACACTAAACTA 57.842 33.333 0.00 0.00 0.00 2.24
2509 2908 7.663905 TGTGCCTAAATTGTATGACACTAAACT 59.336 33.333 0.00 0.00 0.00 2.66
2510 2909 7.812648 TGTGCCTAAATTGTATGACACTAAAC 58.187 34.615 0.00 0.00 0.00 2.01
2511 2910 7.987750 TGTGCCTAAATTGTATGACACTAAA 57.012 32.000 0.00 0.00 0.00 1.85
2512 2911 7.609918 ACATGTGCCTAAATTGTATGACACTAA 59.390 33.333 0.00 0.00 0.00 2.24
2513 2912 7.109501 ACATGTGCCTAAATTGTATGACACTA 58.890 34.615 0.00 0.00 0.00 2.74
2514 2913 5.945784 ACATGTGCCTAAATTGTATGACACT 59.054 36.000 0.00 0.00 0.00 3.55
2515 2914 6.194796 ACATGTGCCTAAATTGTATGACAC 57.805 37.500 0.00 0.00 0.00 3.67
2516 2915 6.832520 AACATGTGCCTAAATTGTATGACA 57.167 33.333 0.00 0.00 0.00 3.58
2517 2916 7.312154 TCAAACATGTGCCTAAATTGTATGAC 58.688 34.615 0.00 0.00 0.00 3.06
2518 2917 7.362834 CCTCAAACATGTGCCTAAATTGTATGA 60.363 37.037 0.00 0.00 0.00 2.15
2519 2918 6.753279 CCTCAAACATGTGCCTAAATTGTATG 59.247 38.462 0.00 0.00 0.00 2.39
2520 2919 6.663093 TCCTCAAACATGTGCCTAAATTGTAT 59.337 34.615 0.00 0.00 0.00 2.29
2521 2920 6.007076 TCCTCAAACATGTGCCTAAATTGTA 58.993 36.000 0.00 0.00 0.00 2.41
2522 2921 4.832266 TCCTCAAACATGTGCCTAAATTGT 59.168 37.500 0.00 0.00 0.00 2.71
2523 2922 5.389859 TCCTCAAACATGTGCCTAAATTG 57.610 39.130 0.00 0.00 0.00 2.32
2524 2923 5.716228 TGATCCTCAAACATGTGCCTAAATT 59.284 36.000 0.00 0.00 0.00 1.82
2525 2924 5.263599 TGATCCTCAAACATGTGCCTAAAT 58.736 37.500 0.00 0.00 0.00 1.40
2526 2925 4.661222 TGATCCTCAAACATGTGCCTAAA 58.339 39.130 0.00 0.00 0.00 1.85
2527 2926 4.299586 TGATCCTCAAACATGTGCCTAA 57.700 40.909 0.00 0.00 0.00 2.69
2528 2927 3.998913 TGATCCTCAAACATGTGCCTA 57.001 42.857 0.00 0.00 0.00 3.93
2529 2928 2.885135 TGATCCTCAAACATGTGCCT 57.115 45.000 0.00 0.00 0.00 4.75
2530 2929 5.581126 TTATTGATCCTCAAACATGTGCC 57.419 39.130 0.00 0.00 40.12 5.01
2531 2930 9.585099 TTATTTTATTGATCCTCAAACATGTGC 57.415 29.630 0.00 0.00 40.12 4.57
2575 2974 9.817809 CAGCTAGGTAAGTACATTTGATCTTTA 57.182 33.333 0.00 0.00 0.00 1.85
2576 2975 7.281100 GCAGCTAGGTAAGTACATTTGATCTTT 59.719 37.037 0.00 0.00 0.00 2.52
2577 2976 6.763610 GCAGCTAGGTAAGTACATTTGATCTT 59.236 38.462 0.00 0.00 0.00 2.40
2578 2977 6.127054 TGCAGCTAGGTAAGTACATTTGATCT 60.127 38.462 0.00 0.00 0.00 2.75
2579 2978 6.049149 TGCAGCTAGGTAAGTACATTTGATC 58.951 40.000 0.00 0.00 0.00 2.92
2580 2979 5.989477 TGCAGCTAGGTAAGTACATTTGAT 58.011 37.500 0.00 0.00 0.00 2.57
2581 2980 5.414789 TGCAGCTAGGTAAGTACATTTGA 57.585 39.130 0.00 0.00 0.00 2.69
2582 2981 5.008019 CCATGCAGCTAGGTAAGTACATTTG 59.992 44.000 0.00 0.00 0.00 2.32
2583 2982 5.104527 TCCATGCAGCTAGGTAAGTACATTT 60.105 40.000 0.00 0.00 0.00 2.32
2584 2983 4.408921 TCCATGCAGCTAGGTAAGTACATT 59.591 41.667 0.00 0.00 0.00 2.71
2585 2984 3.967326 TCCATGCAGCTAGGTAAGTACAT 59.033 43.478 0.00 0.00 0.00 2.29
2586 2985 3.132289 GTCCATGCAGCTAGGTAAGTACA 59.868 47.826 0.00 0.00 0.00 2.90
2587 2986 3.132289 TGTCCATGCAGCTAGGTAAGTAC 59.868 47.826 0.00 0.00 0.00 2.73
2588 2987 3.132289 GTGTCCATGCAGCTAGGTAAGTA 59.868 47.826 0.00 0.00 0.00 2.24
2589 2988 2.093447 GTGTCCATGCAGCTAGGTAAGT 60.093 50.000 0.00 0.00 0.00 2.24
2590 2989 2.093500 TGTGTCCATGCAGCTAGGTAAG 60.093 50.000 0.00 0.00 0.00 2.34
2591 2990 1.905894 TGTGTCCATGCAGCTAGGTAA 59.094 47.619 0.00 0.00 0.00 2.85
2592 2991 1.567357 TGTGTCCATGCAGCTAGGTA 58.433 50.000 0.00 0.00 0.00 3.08
2593 2992 0.914644 ATGTGTCCATGCAGCTAGGT 59.085 50.000 0.00 0.00 0.00 3.08
2594 2993 1.306148 CATGTGTCCATGCAGCTAGG 58.694 55.000 0.00 0.00 41.88 3.02
2603 3002 8.821686 TTATTGATCCTTAAACATGTGTCCAT 57.178 30.769 0.00 0.00 0.00 3.41
2604 3003 8.642935 TTTATTGATCCTTAAACATGTGTCCA 57.357 30.769 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.