Multiple sequence alignment - TraesCS3A01G525000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G525000 chr3A 100.000 5139 0 0 1 5139 739512831 739517969 0.000000e+00 9491
1 TraesCS3A01G525000 chr3B 88.185 2463 163 76 30 2408 816514716 816517134 0.000000e+00 2819
2 TraesCS3A01G525000 chr3B 92.977 1723 95 22 2510 4225 816517141 816518844 0.000000e+00 2488
3 TraesCS3A01G525000 chr3B 82.109 844 65 39 4376 5138 816519004 816519842 1.210000e-180 643
4 TraesCS3A01G525000 chr3B 94.068 118 5 1 4221 4338 816518884 816518999 1.470000e-40 178
5 TraesCS3A01G525000 chr3D 88.250 2451 136 69 30 2408 607059421 607061791 0.000000e+00 2791
6 TraesCS3A01G525000 chr3D 92.977 1723 86 24 2513 4224 607061801 607063499 0.000000e+00 2479
7 TraesCS3A01G525000 chr3D 84.302 981 58 38 4229 5134 607063547 607064506 0.000000e+00 870
8 TraesCS3A01G525000 chr1A 93.902 82 5 0 3699 3780 12157750 12157669 1.940000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G525000 chr3A 739512831 739517969 5138 False 9491.000000 9491 100.000000 1 5139 1 chr3A.!!$F1 5138
1 TraesCS3A01G525000 chr3B 816514716 816519842 5126 False 1532.000000 2819 89.334750 30 5138 4 chr3B.!!$F1 5108
2 TraesCS3A01G525000 chr3D 607059421 607064506 5085 False 2046.666667 2791 88.509667 30 5134 3 chr3D.!!$F1 5104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 875 0.108615 CTGAGGTAGGGAAGCGTGTG 60.109 60.000 0.00 0.00 0.00 3.82 F
886 995 0.176680 ACTACAGCCGCCTGATTCTG 59.823 55.000 0.00 0.00 41.77 3.02 F
904 1013 0.604073 TGATGCAAACATGGGCTGTG 59.396 50.000 0.00 0.00 38.39 3.66 F
2041 2175 0.613012 GGCATTTCTGTGGGCTCCTT 60.613 55.000 0.00 0.00 0.00 3.36 F
2441 2576 0.730265 TGTCGTGTTGCACTGTTTCC 59.270 50.000 0.00 0.00 31.34 3.13 F
2442 2577 1.014352 GTCGTGTTGCACTGTTTCCT 58.986 50.000 0.00 0.00 31.34 3.36 F
3505 3642 1.067669 TCGTGTGCCTGATATCTGCTC 59.932 52.381 15.65 13.17 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 2557 0.730265 GGAAACAGTGCAACACGACA 59.270 50.000 0.00 0.00 41.43 4.35 R
2423 2558 1.014352 AGGAAACAGTGCAACACGAC 58.986 50.000 0.00 0.00 41.43 4.34 R
2429 2564 1.098869 TGCGAAAGGAAACAGTGCAA 58.901 45.000 0.00 0.00 0.00 4.08 R
3502 3639 0.093705 GTCATTCTGCAACGACGAGC 59.906 55.000 0.00 5.94 0.00 5.03 R
3505 3642 1.136252 CCAAGTCATTCTGCAACGACG 60.136 52.381 0.00 0.00 33.56 5.12 R
3878 4016 1.472662 CGTTCTCCACCTGTCCCTGT 61.473 60.000 0.00 0.00 0.00 4.00 R
4555 4771 0.326427 AGGAGAGGCTGCAGAGGATT 60.326 55.000 20.43 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 2.438434 AGAAGATTTGGCCGGCCG 60.438 61.111 39.00 21.04 39.42 6.13
116 119 4.077180 ACCCGTCCTCCCCTCTCC 62.077 72.222 0.00 0.00 0.00 3.71
118 121 4.862823 CCGTCCTCCCCTCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
141 144 3.631227 CCTTCTTCAATCCCAATCTCTGC 59.369 47.826 0.00 0.00 0.00 4.26
325 347 2.819595 CGGCGCTGCAACAGGTAT 60.820 61.111 7.64 0.00 31.21 2.73
355 377 2.040544 CACGGGGCTGCTTCGATTT 61.041 57.895 18.25 0.00 0.00 2.17
402 425 2.497675 TCATTATCATCGCTAGAGCCCC 59.502 50.000 0.00 0.00 37.91 5.80
583 625 7.340487 GGAGTTGGAACATCTTTAATGAATCCT 59.660 37.037 15.82 3.74 38.66 3.24
605 647 2.562298 GCACTTCAATTTCCCACATGGA 59.438 45.455 0.00 0.00 43.18 3.41
606 648 3.614870 GCACTTCAATTTCCCACATGGAC 60.615 47.826 0.00 0.00 45.11 4.02
607 649 3.573538 CACTTCAATTTCCCACATGGACA 59.426 43.478 0.00 0.00 45.11 4.02
608 650 4.221262 CACTTCAATTTCCCACATGGACAT 59.779 41.667 0.00 0.00 45.11 3.06
609 651 4.221262 ACTTCAATTTCCCACATGGACATG 59.779 41.667 10.57 10.57 45.11 3.21
610 652 3.098377 TCAATTTCCCACATGGACATGG 58.902 45.455 15.94 1.40 45.11 3.66
641 689 6.408869 CCATGCCAAATTTCCAATCTTTACT 58.591 36.000 0.00 0.00 0.00 2.24
643 691 7.492344 CCATGCCAAATTTCCAATCTTTACTAC 59.508 37.037 0.00 0.00 0.00 2.73
644 692 6.616947 TGCCAAATTTCCAATCTTTACTACG 58.383 36.000 0.00 0.00 0.00 3.51
645 693 6.207810 TGCCAAATTTCCAATCTTTACTACGT 59.792 34.615 0.00 0.00 0.00 3.57
646 694 7.390996 TGCCAAATTTCCAATCTTTACTACGTA 59.609 33.333 0.00 0.00 0.00 3.57
647 695 7.695201 GCCAAATTTCCAATCTTTACTACGTAC 59.305 37.037 0.00 0.00 0.00 3.67
649 697 8.723311 CAAATTTCCAATCTTTACTACGTACCA 58.277 33.333 0.00 0.00 0.00 3.25
705 784 1.270947 CCAACCAGTAACCGGCTAACA 60.271 52.381 0.00 0.00 0.00 2.41
708 787 0.249398 CCAGTAACCGGCTAACAGCT 59.751 55.000 0.00 0.00 41.99 4.24
727 806 2.353406 GCTGCATCAAAATCAGGCAAGT 60.353 45.455 0.00 0.00 33.58 3.16
732 811 4.321156 GCATCAAAATCAGGCAAGTGTGTA 60.321 41.667 0.00 0.00 0.00 2.90
737 816 8.121305 TCAAAATCAGGCAAGTGTGTATAATT 57.879 30.769 0.00 0.00 0.00 1.40
752 842 2.309528 TAATTGGCAGCGACTGGTAG 57.690 50.000 8.57 0.00 31.21 3.18
756 846 1.227002 GGCAGCGACTGGTAGCTAC 60.227 63.158 15.88 15.88 39.52 3.58
757 847 1.586564 GCAGCGACTGGTAGCTACG 60.587 63.158 17.48 7.05 39.52 3.51
758 848 1.064296 CAGCGACTGGTAGCTACGG 59.936 63.158 17.48 14.44 39.52 4.02
759 849 2.278661 GCGACTGGTAGCTACGGC 60.279 66.667 17.48 11.31 39.06 5.68
760 850 3.060020 GCGACTGGTAGCTACGGCA 62.060 63.158 17.48 9.88 41.70 5.69
762 852 0.317938 CGACTGGTAGCTACGGCATC 60.318 60.000 17.48 10.97 41.70 3.91
763 853 1.033574 GACTGGTAGCTACGGCATCT 58.966 55.000 17.48 0.00 41.70 2.90
767 861 0.315568 GGTAGCTACGGCATCTGAGG 59.684 60.000 17.48 0.00 41.70 3.86
781 875 0.108615 CTGAGGTAGGGAAGCGTGTG 60.109 60.000 0.00 0.00 0.00 3.82
808 902 3.066342 TGGCAGCGAGTAATGACTAGTAC 59.934 47.826 0.00 0.00 35.45 2.73
810 904 4.283678 GCAGCGAGTAATGACTAGTACAG 58.716 47.826 0.00 0.00 35.45 2.74
811 905 4.201930 GCAGCGAGTAATGACTAGTACAGT 60.202 45.833 0.00 0.00 41.47 3.55
812 906 5.007430 GCAGCGAGTAATGACTAGTACAGTA 59.993 44.000 0.00 0.00 37.72 2.74
813 907 6.651308 CAGCGAGTAATGACTAGTACAGTAG 58.349 44.000 0.00 0.00 37.72 2.57
814 908 6.258287 CAGCGAGTAATGACTAGTACAGTAGT 59.742 42.308 0.00 2.85 37.72 2.73
815 909 7.437565 CAGCGAGTAATGACTAGTACAGTAGTA 59.562 40.741 0.00 0.00 37.72 1.82
816 910 7.437862 AGCGAGTAATGACTAGTACAGTAGTAC 59.562 40.741 0.00 0.00 42.63 2.73
886 995 0.176680 ACTACAGCCGCCTGATTCTG 59.823 55.000 0.00 0.00 41.77 3.02
891 1000 1.820906 GCCGCCTGATTCTGATGCA 60.821 57.895 0.00 0.00 0.00 3.96
897 1006 3.444916 GCCTGATTCTGATGCAAACATG 58.555 45.455 0.00 0.00 36.35 3.21
899 1008 3.181479 CCTGATTCTGATGCAAACATGGG 60.181 47.826 0.00 0.00 36.35 4.00
901 1010 1.927487 TTCTGATGCAAACATGGGCT 58.073 45.000 0.00 0.00 36.35 5.19
902 1011 1.179152 TCTGATGCAAACATGGGCTG 58.821 50.000 0.00 0.00 36.35 4.85
903 1012 0.892755 CTGATGCAAACATGGGCTGT 59.107 50.000 0.00 0.00 40.84 4.40
904 1013 0.604073 TGATGCAAACATGGGCTGTG 59.396 50.000 0.00 0.00 38.39 3.66
921 1030 3.668447 CTGTGTGTATTTCAGGTCTGCT 58.332 45.455 0.00 0.00 0.00 4.24
934 1043 2.597217 CTGCTTTCCGGGTTGGCA 60.597 61.111 0.00 6.87 37.80 4.92
952 1061 4.343231 TGGCACCATCATTATGTTCTTGT 58.657 39.130 0.00 0.00 0.00 3.16
1012 1121 2.340809 CGTTCCCGCACTGGTGTA 59.659 61.111 2.64 0.00 35.15 2.90
1064 1173 2.070262 GCAGGTTCACATGCCTTTTC 57.930 50.000 5.25 0.00 46.71 2.29
1069 1180 2.893489 GGTTCACATGCCTTTTCCTTCT 59.107 45.455 0.00 0.00 0.00 2.85
1079 1190 3.680490 CCTTTTCCTTCTCCTCTTGGTC 58.320 50.000 0.00 0.00 34.23 4.02
1085 1196 2.419851 CCTTCTCCTCTTGGTCATCTGC 60.420 54.545 0.00 0.00 34.23 4.26
1118 1232 2.307686 CTGCCCTGTTTCCTTAACCCTA 59.692 50.000 0.00 0.00 35.81 3.53
1293 1413 1.640428 TATCAACGTAGTGCTGCAGC 58.360 50.000 31.89 31.89 45.00 5.25
1325 1445 1.661341 GCAGACCGCATCTCAAGAAT 58.339 50.000 0.00 0.00 41.79 2.40
1751 1882 3.885297 CCACCTGGATGGATGTATTTCAC 59.115 47.826 0.00 0.00 43.02 3.18
1846 1977 6.042638 TCCTTTCTTTCTCCACTAGATGTG 57.957 41.667 0.00 0.00 45.80 3.21
1894 2025 6.534436 GCTGACTATGATGTATTCTGCCTATG 59.466 42.308 0.00 0.00 0.00 2.23
1918 2049 7.884257 TGACATTGTTCTCAAATAATCAGCAA 58.116 30.769 0.00 0.00 37.11 3.91
1920 2051 9.195411 GACATTGTTCTCAAATAATCAGCAAAA 57.805 29.630 0.00 0.00 37.11 2.44
1921 2052 9.199982 ACATTGTTCTCAAATAATCAGCAAAAG 57.800 29.630 0.00 0.00 37.11 2.27
1954 2088 6.866010 TGTCATCTGATACATTGTTATGCC 57.134 37.500 0.00 0.00 35.03 4.40
2025 2159 1.655885 CACACTGTTGTGCACTGGCA 61.656 55.000 19.41 12.64 46.60 4.92
2041 2175 0.613012 GGCATTTCTGTGGGCTCCTT 60.613 55.000 0.00 0.00 0.00 3.36
2048 2182 4.380843 TTCTGTGGGCTCCTTTGAATTA 57.619 40.909 0.00 0.00 0.00 1.40
2087 2221 3.091545 CCTGTGGTATGTCCTGCATTTT 58.908 45.455 0.00 0.00 38.94 1.82
2088 2222 3.511146 CCTGTGGTATGTCCTGCATTTTT 59.489 43.478 0.00 0.00 38.94 1.94
2121 2256 6.497785 TTTATGCCCAGAATTTGCATTTTG 57.502 33.333 9.84 0.00 42.79 2.44
2124 2259 1.733360 CCCAGAATTTGCATTTTGGCG 59.267 47.619 4.45 0.00 41.48 5.69
2172 2307 9.678260 AAATGTAAATCTTAATCTCTGCACTCT 57.322 29.630 0.00 0.00 0.00 3.24
2340 2475 4.479786 AGAGCAGTCCAGAAGGTAATTC 57.520 45.455 0.00 0.00 38.28 2.17
2344 2479 5.635120 AGCAGTCCAGAAGGTAATTCTTTT 58.365 37.500 0.00 0.00 46.49 2.27
2345 2480 6.071320 AGCAGTCCAGAAGGTAATTCTTTTT 58.929 36.000 0.00 0.00 46.49 1.94
2346 2481 7.231467 AGCAGTCCAGAAGGTAATTCTTTTTA 58.769 34.615 0.00 0.00 46.49 1.52
2389 2524 1.149288 TCTGAGTGTCCCAGGTTACCT 59.851 52.381 0.00 0.00 32.73 3.08
2413 2548 5.845391 TTTTACTTCCACTGTTTTCTGGG 57.155 39.130 0.00 0.00 0.00 4.45
2414 2549 1.692411 ACTTCCACTGTTTTCTGGGC 58.308 50.000 0.00 0.00 0.00 5.36
2415 2550 1.064017 ACTTCCACTGTTTTCTGGGCA 60.064 47.619 0.00 0.00 0.00 5.36
2416 2551 2.242043 CTTCCACTGTTTTCTGGGCAT 58.758 47.619 0.00 0.00 0.00 4.40
2417 2552 2.380064 TCCACTGTTTTCTGGGCATT 57.620 45.000 0.00 0.00 0.00 3.56
2418 2553 1.962807 TCCACTGTTTTCTGGGCATTG 59.037 47.619 0.00 0.00 0.00 2.82
2419 2554 1.688197 CCACTGTTTTCTGGGCATTGT 59.312 47.619 0.00 0.00 0.00 2.71
2420 2555 2.102925 CCACTGTTTTCTGGGCATTGTT 59.897 45.455 0.00 0.00 0.00 2.83
2421 2556 3.432046 CCACTGTTTTCTGGGCATTGTTT 60.432 43.478 0.00 0.00 0.00 2.83
2422 2557 4.190772 CACTGTTTTCTGGGCATTGTTTT 58.809 39.130 0.00 0.00 0.00 2.43
2423 2558 4.034279 CACTGTTTTCTGGGCATTGTTTTG 59.966 41.667 0.00 0.00 0.00 2.44
2424 2559 4.190772 CTGTTTTCTGGGCATTGTTTTGT 58.809 39.130 0.00 0.00 0.00 2.83
2425 2560 4.187694 TGTTTTCTGGGCATTGTTTTGTC 58.812 39.130 0.00 0.00 0.00 3.18
2426 2561 2.791383 TTCTGGGCATTGTTTTGTCG 57.209 45.000 0.00 0.00 0.00 4.35
2427 2562 1.686355 TCTGGGCATTGTTTTGTCGT 58.314 45.000 0.00 0.00 0.00 4.34
2428 2563 1.336440 TCTGGGCATTGTTTTGTCGTG 59.664 47.619 0.00 0.00 0.00 4.35
2429 2564 1.066908 CTGGGCATTGTTTTGTCGTGT 59.933 47.619 0.00 0.00 0.00 4.49
2430 2565 1.478510 TGGGCATTGTTTTGTCGTGTT 59.521 42.857 0.00 0.00 0.00 3.32
2431 2566 1.857837 GGGCATTGTTTTGTCGTGTTG 59.142 47.619 0.00 0.00 0.00 3.33
2432 2567 1.257675 GGCATTGTTTTGTCGTGTTGC 59.742 47.619 0.00 0.00 0.00 4.17
2433 2568 1.923204 GCATTGTTTTGTCGTGTTGCA 59.077 42.857 0.00 0.00 0.00 4.08
2434 2569 2.284969 GCATTGTTTTGTCGTGTTGCAC 60.285 45.455 0.00 0.00 0.00 4.57
2435 2570 2.999507 TTGTTTTGTCGTGTTGCACT 57.000 40.000 0.00 0.00 31.34 4.40
2436 2571 2.254918 TGTTTTGTCGTGTTGCACTG 57.745 45.000 0.00 0.00 31.34 3.66
2437 2572 1.537638 TGTTTTGTCGTGTTGCACTGT 59.462 42.857 0.00 0.00 31.34 3.55
2438 2573 2.030717 TGTTTTGTCGTGTTGCACTGTT 60.031 40.909 0.00 0.00 31.34 3.16
2439 2574 2.983803 GTTTTGTCGTGTTGCACTGTTT 59.016 40.909 0.00 0.00 31.34 2.83
2440 2575 2.535934 TTGTCGTGTTGCACTGTTTC 57.464 45.000 0.00 0.00 31.34 2.78
2441 2576 0.730265 TGTCGTGTTGCACTGTTTCC 59.270 50.000 0.00 0.00 31.34 3.13
2442 2577 1.014352 GTCGTGTTGCACTGTTTCCT 58.986 50.000 0.00 0.00 31.34 3.36
2443 2578 1.400494 GTCGTGTTGCACTGTTTCCTT 59.600 47.619 0.00 0.00 31.34 3.36
2444 2579 2.088423 TCGTGTTGCACTGTTTCCTTT 58.912 42.857 0.00 0.00 31.34 3.11
2445 2580 2.096819 TCGTGTTGCACTGTTTCCTTTC 59.903 45.455 0.00 0.00 31.34 2.62
2446 2581 2.450160 GTGTTGCACTGTTTCCTTTCG 58.550 47.619 0.00 0.00 0.00 3.46
2447 2582 1.202245 TGTTGCACTGTTTCCTTTCGC 60.202 47.619 0.00 0.00 0.00 4.70
2448 2583 1.098869 TTGCACTGTTTCCTTTCGCA 58.901 45.000 0.00 0.00 0.00 5.10
2449 2584 1.098869 TGCACTGTTTCCTTTCGCAA 58.901 45.000 0.00 0.00 0.00 4.85
2450 2585 1.680735 TGCACTGTTTCCTTTCGCAAT 59.319 42.857 0.00 0.00 0.00 3.56
2451 2586 2.881513 TGCACTGTTTCCTTTCGCAATA 59.118 40.909 0.00 0.00 0.00 1.90
2452 2587 3.234386 GCACTGTTTCCTTTCGCAATAC 58.766 45.455 0.00 0.00 0.00 1.89
2453 2588 3.821841 CACTGTTTCCTTTCGCAATACC 58.178 45.455 0.00 0.00 0.00 2.73
2454 2589 3.502211 CACTGTTTCCTTTCGCAATACCT 59.498 43.478 0.00 0.00 0.00 3.08
2455 2590 4.023193 CACTGTTTCCTTTCGCAATACCTT 60.023 41.667 0.00 0.00 0.00 3.50
2456 2591 4.583073 ACTGTTTCCTTTCGCAATACCTTT 59.417 37.500 0.00 0.00 0.00 3.11
2457 2592 5.116069 TGTTTCCTTTCGCAATACCTTTC 57.884 39.130 0.00 0.00 0.00 2.62
2458 2593 4.825085 TGTTTCCTTTCGCAATACCTTTCT 59.175 37.500 0.00 0.00 0.00 2.52
2459 2594 5.300792 TGTTTCCTTTCGCAATACCTTTCTT 59.699 36.000 0.00 0.00 0.00 2.52
2460 2595 5.371115 TTCCTTTCGCAATACCTTTCTTG 57.629 39.130 0.00 0.00 0.00 3.02
2461 2596 3.756434 TCCTTTCGCAATACCTTTCTTGG 59.244 43.478 0.00 0.00 0.00 3.61
2462 2597 3.501950 CTTTCGCAATACCTTTCTTGGC 58.498 45.455 0.00 0.00 0.00 4.52
2463 2598 2.192664 TCGCAATACCTTTCTTGGCA 57.807 45.000 0.00 0.00 0.00 4.92
2464 2599 2.722094 TCGCAATACCTTTCTTGGCAT 58.278 42.857 0.00 0.00 0.00 4.40
2465 2600 3.088532 TCGCAATACCTTTCTTGGCATT 58.911 40.909 0.00 0.00 0.00 3.56
2466 2601 3.509575 TCGCAATACCTTTCTTGGCATTT 59.490 39.130 0.00 0.00 0.00 2.32
2467 2602 4.021544 TCGCAATACCTTTCTTGGCATTTT 60.022 37.500 0.00 0.00 0.00 1.82
2468 2603 4.690280 CGCAATACCTTTCTTGGCATTTTT 59.310 37.500 0.00 0.00 0.00 1.94
2491 2626 8.570068 TTTTACTTTCACTTTACTTCCACTGT 57.430 30.769 0.00 0.00 0.00 3.55
2492 2627 8.570068 TTTACTTTCACTTTACTTCCACTGTT 57.430 30.769 0.00 0.00 0.00 3.16
2493 2628 8.570068 TTACTTTCACTTTACTTCCACTGTTT 57.430 30.769 0.00 0.00 0.00 2.83
2494 2629 7.085052 ACTTTCACTTTACTTCCACTGTTTC 57.915 36.000 0.00 0.00 0.00 2.78
2495 2630 6.095021 ACTTTCACTTTACTTCCACTGTTTCC 59.905 38.462 0.00 0.00 0.00 3.13
2496 2631 5.367945 TCACTTTACTTCCACTGTTTCCT 57.632 39.130 0.00 0.00 0.00 3.36
2497 2632 5.751586 TCACTTTACTTCCACTGTTTCCTT 58.248 37.500 0.00 0.00 0.00 3.36
2498 2633 6.184789 TCACTTTACTTCCACTGTTTCCTTT 58.815 36.000 0.00 0.00 0.00 3.11
2499 2634 6.317893 TCACTTTACTTCCACTGTTTCCTTTC 59.682 38.462 0.00 0.00 0.00 2.62
2500 2635 6.318900 CACTTTACTTCCACTGTTTCCTTTCT 59.681 38.462 0.00 0.00 0.00 2.52
2501 2636 6.890268 ACTTTACTTCCACTGTTTCCTTTCTT 59.110 34.615 0.00 0.00 0.00 2.52
2502 2637 8.050930 ACTTTACTTCCACTGTTTCCTTTCTTA 58.949 33.333 0.00 0.00 0.00 2.10
2503 2638 8.446599 TTTACTTCCACTGTTTCCTTTCTTAG 57.553 34.615 0.00 0.00 0.00 2.18
2504 2639 6.002653 ACTTCCACTGTTTCCTTTCTTAGT 57.997 37.500 0.00 0.00 0.00 2.24
2505 2640 7.133133 ACTTCCACTGTTTCCTTTCTTAGTA 57.867 36.000 0.00 0.00 0.00 1.82
2506 2641 6.990939 ACTTCCACTGTTTCCTTTCTTAGTAC 59.009 38.462 0.00 0.00 0.00 2.73
2507 2642 5.861727 TCCACTGTTTCCTTTCTTAGTACC 58.138 41.667 0.00 0.00 0.00 3.34
2508 2643 5.605488 TCCACTGTTTCCTTTCTTAGTACCT 59.395 40.000 0.00 0.00 0.00 3.08
2511 2646 6.766467 CACTGTTTCCTTTCTTAGTACCTTGT 59.234 38.462 0.00 0.00 0.00 3.16
2530 2665 4.744795 TGTTACAGGGCATTGTTTTGTT 57.255 36.364 0.00 0.00 32.56 2.83
2742 2878 5.240623 TGTTCTGAAACAAGCGAAATGGTAT 59.759 36.000 0.00 0.00 42.34 2.73
2754 2890 2.283145 AATGGTATGCCCTGATGCTC 57.717 50.000 0.00 0.00 0.00 4.26
2793 2929 6.801539 TTTGTAATCTGAACAGCGAATCTT 57.198 33.333 0.00 0.00 0.00 2.40
2937 3073 3.181470 GGAGAGGAGTATGCTTTCAGTCC 60.181 52.174 0.00 0.00 39.50 3.85
2952 3088 5.738619 TTCAGTCCTCACTTAGCATAACA 57.261 39.130 0.00 0.00 0.00 2.41
2969 3105 3.715628 AACACATTGTTCTGTTGGAGC 57.284 42.857 0.00 0.00 35.27 4.70
3001 3137 7.008628 GTGACTTGCTAACATGATTTACATTGC 59.991 37.037 0.00 0.00 37.07 3.56
3061 3197 1.528309 ACAACCTGGTTTGGAGCCG 60.528 57.895 9.90 0.00 0.00 5.52
3288 3424 3.561310 CCATGTGCTGCGTATGTATTTCT 59.439 43.478 12.78 0.00 0.00 2.52
3289 3425 4.521010 CATGTGCTGCGTATGTATTTCTG 58.479 43.478 7.51 0.00 0.00 3.02
3293 3429 2.614057 GCTGCGTATGTATTTCTGCCTT 59.386 45.455 0.00 0.00 0.00 4.35
3321 3457 4.095782 GCTGACTTGTGTTACTTTGGTTGA 59.904 41.667 0.00 0.00 0.00 3.18
3334 3470 9.337396 GTTACTTTGGTTGATGATATATGTGGA 57.663 33.333 0.00 0.00 0.00 4.02
3389 3525 6.222389 CAGTTTTGTTGAAATTATGGCTCCA 58.778 36.000 0.00 0.00 0.00 3.86
3440 3576 8.601546 TGTGTATGGCATATGATTCAGGTATAA 58.398 33.333 10.92 0.00 0.00 0.98
3444 3580 8.743085 ATGGCATATGATTCAGGTATAACATC 57.257 34.615 6.97 0.00 0.00 3.06
3445 3581 6.818142 TGGCATATGATTCAGGTATAACATCG 59.182 38.462 6.97 0.00 0.00 3.84
3447 3583 7.010552 GGCATATGATTCAGGTATAACATCGTC 59.989 40.741 6.97 0.00 0.00 4.20
3448 3584 7.761704 GCATATGATTCAGGTATAACATCGTCT 59.238 37.037 6.97 0.00 0.00 4.18
3449 3585 9.080915 CATATGATTCAGGTATAACATCGTCTG 57.919 37.037 0.00 0.00 0.00 3.51
3450 3586 6.465439 TGATTCAGGTATAACATCGTCTGT 57.535 37.500 0.00 0.00 40.84 3.41
3456 3593 6.321435 TCAGGTATAACATCGTCTGTCATCTT 59.679 38.462 0.00 0.00 36.98 2.40
3457 3594 6.638873 CAGGTATAACATCGTCTGTCATCTTC 59.361 42.308 0.00 0.00 36.98 2.87
3466 3603 4.082517 TCGTCTGTCATCTTCTTTCCTCTG 60.083 45.833 0.00 0.00 0.00 3.35
3467 3604 4.321601 CGTCTGTCATCTTCTTTCCTCTGT 60.322 45.833 0.00 0.00 0.00 3.41
3469 3606 5.047377 GTCTGTCATCTTCTTTCCTCTGTCT 60.047 44.000 0.00 0.00 0.00 3.41
3470 3607 5.047448 TCTGTCATCTTCTTTCCTCTGTCTG 60.047 44.000 0.00 0.00 0.00 3.51
3473 3610 5.637387 GTCATCTTCTTTCCTCTGTCTGTTC 59.363 44.000 0.00 0.00 0.00 3.18
3474 3611 5.305386 TCATCTTCTTTCCTCTGTCTGTTCA 59.695 40.000 0.00 0.00 0.00 3.18
3475 3612 4.950050 TCTTCTTTCCTCTGTCTGTTCAC 58.050 43.478 0.00 0.00 0.00 3.18
3476 3613 4.651503 TCTTCTTTCCTCTGTCTGTTCACT 59.348 41.667 0.00 0.00 0.00 3.41
3477 3614 5.129485 TCTTCTTTCCTCTGTCTGTTCACTT 59.871 40.000 0.00 0.00 0.00 3.16
3478 3615 4.950050 TCTTTCCTCTGTCTGTTCACTTC 58.050 43.478 0.00 0.00 0.00 3.01
3479 3616 4.405680 TCTTTCCTCTGTCTGTTCACTTCA 59.594 41.667 0.00 0.00 0.00 3.02
3482 3619 6.419484 TTCCTCTGTCTGTTCACTTCAATA 57.581 37.500 0.00 0.00 0.00 1.90
3483 3620 5.784177 TCCTCTGTCTGTTCACTTCAATAC 58.216 41.667 0.00 0.00 0.00 1.89
3484 3621 4.932200 CCTCTGTCTGTTCACTTCAATACC 59.068 45.833 0.00 0.00 0.00 2.73
3485 3622 5.279708 CCTCTGTCTGTTCACTTCAATACCT 60.280 44.000 0.00 0.00 0.00 3.08
3486 3623 5.784177 TCTGTCTGTTCACTTCAATACCTC 58.216 41.667 0.00 0.00 0.00 3.85
3487 3624 4.556233 TGTCTGTTCACTTCAATACCTCG 58.444 43.478 0.00 0.00 0.00 4.63
3488 3625 4.038763 TGTCTGTTCACTTCAATACCTCGT 59.961 41.667 0.00 0.00 0.00 4.18
3489 3626 4.386049 GTCTGTTCACTTCAATACCTCGTG 59.614 45.833 0.00 0.00 0.00 4.35
3490 3627 4.038763 TCTGTTCACTTCAATACCTCGTGT 59.961 41.667 0.00 0.00 0.00 4.49
3491 3628 4.055360 TGTTCACTTCAATACCTCGTGTG 58.945 43.478 0.00 0.00 0.00 3.82
3492 3629 2.683968 TCACTTCAATACCTCGTGTGC 58.316 47.619 0.00 0.00 0.00 4.57
3494 3631 1.623811 ACTTCAATACCTCGTGTGCCT 59.376 47.619 0.00 0.00 0.00 4.75
3495 3632 2.002586 CTTCAATACCTCGTGTGCCTG 58.997 52.381 0.00 0.00 0.00 4.85
3496 3633 1.262417 TCAATACCTCGTGTGCCTGA 58.738 50.000 0.00 0.00 0.00 3.86
3498 3635 3.028130 TCAATACCTCGTGTGCCTGATA 58.972 45.455 0.00 0.00 0.00 2.15
3500 3637 3.944055 ATACCTCGTGTGCCTGATATC 57.056 47.619 0.00 0.00 0.00 1.63
3502 3639 1.410517 ACCTCGTGTGCCTGATATCTG 59.589 52.381 3.98 3.30 0.00 2.90
3503 3640 1.495878 CTCGTGTGCCTGATATCTGC 58.504 55.000 3.98 7.49 0.00 4.26
3504 3641 1.068281 CTCGTGTGCCTGATATCTGCT 59.932 52.381 15.65 0.00 0.00 4.24
3505 3642 1.067669 TCGTGTGCCTGATATCTGCTC 59.932 52.381 15.65 13.17 0.00 4.26
3506 3643 1.495878 GTGTGCCTGATATCTGCTCG 58.504 55.000 15.65 1.14 0.00 5.03
3507 3644 1.114627 TGTGCCTGATATCTGCTCGT 58.885 50.000 15.65 0.00 0.00 4.18
3508 3645 1.067669 TGTGCCTGATATCTGCTCGTC 59.932 52.381 15.65 7.26 0.00 4.20
3542 3679 1.381867 TGGTTCATGGATGGGGTCTT 58.618 50.000 0.00 0.00 0.00 3.01
3624 3762 9.297037 TGATATATTTCTGACTACTTCCATCGA 57.703 33.333 0.00 0.00 0.00 3.59
3633 3771 7.720074 TCTGACTACTTCCATCGATAACACTAT 59.280 37.037 0.00 0.00 0.00 2.12
3636 3774 9.828852 GACTACTTCCATCGATAACACTATTAG 57.171 37.037 0.00 0.00 0.00 1.73
3671 3809 5.647658 AGCTCTCGACCATCTTATCTCTATG 59.352 44.000 0.00 0.00 0.00 2.23
3679 3817 7.412129 CGACCATCTTATCTCTATGTCTACGAC 60.412 44.444 0.00 0.00 0.00 4.34
3745 3883 1.139734 CGACTCCCAGTGGATCGTG 59.860 63.158 11.95 0.00 40.80 4.35
3830 3968 2.515429 ACAAGGCCCCATCATAGAACAT 59.485 45.455 0.00 0.00 0.00 2.71
3878 4016 4.133820 TCATTCCTGCTTTCGAAAACTCA 58.866 39.130 12.41 9.10 0.00 3.41
3889 4027 1.202651 CGAAAACTCACAGGGACAGGT 60.203 52.381 0.00 0.00 0.00 4.00
4041 4179 0.981183 ATTTGTCCACTAGGCCGTCA 59.019 50.000 0.00 0.00 33.74 4.35
4047 4188 2.889045 GTCCACTAGGCCGTCATATACA 59.111 50.000 0.00 0.00 33.74 2.29
4050 4191 3.509967 CCACTAGGCCGTCATATACATCA 59.490 47.826 0.00 0.00 0.00 3.07
4052 4193 4.022329 CACTAGGCCGTCATATACATCACA 60.022 45.833 0.00 0.00 0.00 3.58
4069 4210 2.237143 TCACAGCTGTTAATCCTCCCTG 59.763 50.000 18.94 0.95 0.00 4.45
4070 4211 2.026822 CACAGCTGTTAATCCTCCCTGT 60.027 50.000 18.94 0.00 32.79 4.00
4129 4270 3.264193 TGAGCTTAGGTGAATGGTGATGT 59.736 43.478 0.00 0.00 0.00 3.06
4203 4369 4.929819 TTTGTTACCTCCCTTTTTGCTC 57.070 40.909 0.00 0.00 0.00 4.26
4294 4477 2.988493 TCGCAAGCAAATGAAAATCAGC 59.012 40.909 0.00 0.00 37.18 4.26
4348 4531 7.981789 TGATGTTCATGTTAATCCTCTCAGTAC 59.018 37.037 0.00 0.00 0.00 2.73
4349 4532 7.239763 TGTTCATGTTAATCCTCTCAGTACA 57.760 36.000 0.00 0.00 0.00 2.90
4371 4554 6.677913 ACATACACCAAAGAAGCACATTAAC 58.322 36.000 0.00 0.00 0.00 2.01
4374 4557 6.220726 ACACCAAAGAAGCACATTAACTTT 57.779 33.333 0.00 0.00 0.00 2.66
4375 4558 6.639563 ACACCAAAGAAGCACATTAACTTTT 58.360 32.000 0.00 0.00 0.00 2.27
4495 4686 5.381757 ACCATAAAACACAGGCTTAGAACA 58.618 37.500 0.00 0.00 0.00 3.18
4496 4687 6.010219 ACCATAAAACACAGGCTTAGAACAT 58.990 36.000 0.00 0.00 0.00 2.71
4537 4753 9.309516 GTAAACTAAAGAATGGTCGATGTGATA 57.690 33.333 0.00 0.00 0.00 2.15
4546 4762 4.736473 TGGTCGATGTGATAATCTCCCTA 58.264 43.478 0.00 0.00 0.00 3.53
4555 4771 6.202331 TGTGATAATCTCCCTAAGGAACTCA 58.798 40.000 0.00 0.00 43.40 3.41
4625 4842 0.393820 AAAAGGCACCACCATTGCTG 59.606 50.000 0.00 0.00 43.14 4.41
4636 4853 0.737219 CCATTGCTGAGCTTAGCCAC 59.263 55.000 25.95 1.43 43.02 5.01
4637 4854 1.456296 CATTGCTGAGCTTAGCCACA 58.544 50.000 25.95 11.70 43.02 4.17
4639 4856 3.495543 GCTGAGCTTAGCCACAGC 58.504 61.111 27.35 27.35 45.55 4.40
4684 4902 1.484240 GTCATCTTCCTCACCTCTGGG 59.516 57.143 0.00 0.00 38.88 4.45
4687 4905 0.252881 TCTTCCTCACCTCTGGGCAT 60.253 55.000 0.00 0.00 35.63 4.40
4776 5018 0.540923 AGATGAACTGGGAGAGCAGC 59.459 55.000 0.00 0.00 0.00 5.25
4907 5149 2.048601 CTTCCTCCTCTGCCATGATCT 58.951 52.381 0.00 0.00 0.00 2.75
4908 5150 1.714541 TCCTCCTCTGCCATGATCTC 58.285 55.000 0.00 0.00 0.00 2.75
4921 5176 5.124936 TGCCATGATCTCAGATGAGTTTTTG 59.875 40.000 9.56 4.73 42.60 2.44
4923 5178 5.067413 CCATGATCTCAGATGAGTTTTTGGG 59.933 44.000 9.56 3.14 42.60 4.12
4927 5182 1.428912 TCAGATGAGTTTTTGGGGCCT 59.571 47.619 0.84 0.00 0.00 5.19
4930 5185 0.486879 ATGAGTTTTTGGGGCCTGGA 59.513 50.000 0.84 0.00 0.00 3.86
4935 5190 0.104725 TTTTTGGGGCCTGGAATGGT 60.105 50.000 0.84 0.00 0.00 3.55
4937 5192 2.029892 TTTGGGGCCTGGAATGGTGT 62.030 55.000 0.84 0.00 0.00 4.16
4941 5196 1.450312 GGCCTGGAATGGTGTCGAG 60.450 63.158 0.00 0.00 0.00 4.04
4945 5200 1.404717 CCTGGAATGGTGTCGAGTCTG 60.405 57.143 0.00 0.00 0.00 3.51
4947 5202 1.967779 TGGAATGGTGTCGAGTCTGAA 59.032 47.619 0.00 0.00 0.00 3.02
4954 5209 2.818432 GGTGTCGAGTCTGAAGTAGGAA 59.182 50.000 0.00 0.00 0.00 3.36
4958 5213 3.375922 GTCGAGTCTGAAGTAGGAAGGAG 59.624 52.174 0.00 0.00 0.00 3.69
4959 5214 3.009253 TCGAGTCTGAAGTAGGAAGGAGT 59.991 47.826 0.00 0.00 0.00 3.85
4961 5216 4.380023 CGAGTCTGAAGTAGGAAGGAGTTG 60.380 50.000 0.00 0.00 0.00 3.16
4962 5217 3.835395 AGTCTGAAGTAGGAAGGAGTTGG 59.165 47.826 0.00 0.00 0.00 3.77
4963 5218 3.055747 GTCTGAAGTAGGAAGGAGTTGGG 60.056 52.174 0.00 0.00 0.00 4.12
4985 5255 4.284746 GGATAGTACCTTGAGAAGATGGGG 59.715 50.000 0.00 0.00 0.00 4.96
5104 5374 5.582689 TCAGCATCGTAGAGAGAAAATCA 57.417 39.130 0.00 0.00 43.63 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.200337 GCCAGACCTGCCGGTTTTT 61.200 57.895 1.90 0.00 45.73 1.94
5 6 2.597510 GCCAGACCTGCCGGTTTT 60.598 61.111 1.90 0.00 45.73 2.43
6 7 3.570212 AGCCAGACCTGCCGGTTT 61.570 61.111 1.90 0.00 45.73 3.27
7 8 4.335647 CAGCCAGACCTGCCGGTT 62.336 66.667 1.90 0.00 45.73 4.44
9 10 4.335647 AACAGCCAGACCTGCCGG 62.336 66.667 0.00 0.00 36.29 6.13
10 11 3.052082 CAACAGCCAGACCTGCCG 61.052 66.667 0.00 0.00 36.29 5.69
11 12 2.674380 CCAACAGCCAGACCTGCC 60.674 66.667 0.00 0.00 36.29 4.85
12 13 2.674380 CCCAACAGCCAGACCTGC 60.674 66.667 0.00 0.00 36.29 4.85
13 14 2.034687 CCCCAACAGCCAGACCTG 59.965 66.667 0.00 0.00 38.78 4.00
14 15 3.971702 GCCCCAACAGCCAGACCT 61.972 66.667 0.00 0.00 0.00 3.85
67 69 1.153958 GCCAAATCTTCTGGTGCGC 60.154 57.895 0.00 0.00 36.24 6.09
99 102 4.077180 GGAGAGGGGAGGACGGGT 62.077 72.222 0.00 0.00 0.00 5.28
116 119 2.245806 AGATTGGGATTGAAGAAGGGGG 59.754 50.000 0.00 0.00 0.00 5.40
118 121 4.205587 CAGAGATTGGGATTGAAGAAGGG 58.794 47.826 0.00 0.00 0.00 3.95
355 377 2.160721 AAGGGGAAGCTGATCGAGTA 57.839 50.000 0.00 0.00 0.00 2.59
402 425 8.121305 AGAACCAATCTATCTATCTAGCACTG 57.879 38.462 0.00 0.00 36.32 3.66
438 461 0.768622 CCCGGCCTTTGGATGGTATA 59.231 55.000 0.00 0.00 0.00 1.47
439 462 1.286305 ACCCGGCCTTTGGATGGTAT 61.286 55.000 0.00 0.00 0.00 2.73
440 463 1.502527 AACCCGGCCTTTGGATGGTA 61.503 55.000 0.00 0.00 0.00 3.25
441 464 2.380571 AAACCCGGCCTTTGGATGGT 62.381 55.000 0.00 0.00 0.00 3.55
528 569 5.011738 TGAACTTTCAACCTAGGAGTAGTGG 59.988 44.000 17.98 2.45 33.55 4.00
583 625 2.299582 CCATGTGGGAAATTGAAGTGCA 59.700 45.455 0.00 0.00 40.01 4.57
641 689 0.171007 GCTGGTTAGCGTGGTACGTA 59.829 55.000 3.19 0.00 44.73 3.57
643 691 3.776656 GCTGGTTAGCGTGGTACG 58.223 61.111 0.00 0.00 45.88 3.67
674 753 5.106436 CGGTTACTGGTTGGTTTCCTAATTC 60.106 44.000 0.00 0.00 0.00 2.17
705 784 1.552578 TGCCTGATTTTGATGCAGCT 58.447 45.000 2.53 0.00 0.00 4.24
708 787 2.629137 ACACTTGCCTGATTTTGATGCA 59.371 40.909 0.00 0.00 0.00 3.96
727 806 2.935849 CAGTCGCTGCCAATTATACACA 59.064 45.455 0.00 0.00 0.00 3.72
732 811 2.838736 CTACCAGTCGCTGCCAATTAT 58.161 47.619 0.00 0.00 0.00 1.28
737 816 1.680989 TAGCTACCAGTCGCTGCCA 60.681 57.895 7.05 0.00 37.05 4.92
752 842 0.315568 CCTACCTCAGATGCCGTAGC 59.684 60.000 0.00 0.00 40.48 3.58
756 846 0.390860 CTTCCCTACCTCAGATGCCG 59.609 60.000 0.00 0.00 0.00 5.69
757 847 0.107643 GCTTCCCTACCTCAGATGCC 59.892 60.000 0.00 0.00 0.00 4.40
758 848 0.249657 CGCTTCCCTACCTCAGATGC 60.250 60.000 0.00 0.00 0.00 3.91
759 849 1.115467 ACGCTTCCCTACCTCAGATG 58.885 55.000 0.00 0.00 0.00 2.90
760 850 1.115467 CACGCTTCCCTACCTCAGAT 58.885 55.000 0.00 0.00 0.00 2.90
762 852 0.108615 CACACGCTTCCCTACCTCAG 60.109 60.000 0.00 0.00 0.00 3.35
763 853 0.830444 ACACACGCTTCCCTACCTCA 60.830 55.000 0.00 0.00 0.00 3.86
767 861 2.676342 CCAATTACACACGCTTCCCTAC 59.324 50.000 0.00 0.00 0.00 3.18
781 875 3.871594 AGTCATTACTCGCTGCCAATTAC 59.128 43.478 0.00 0.00 0.00 1.89
828 937 3.127548 CACGCTGGAGTTTCATATGCTTT 59.872 43.478 0.00 0.00 0.00 3.51
829 938 2.679837 CACGCTGGAGTTTCATATGCTT 59.320 45.455 0.00 0.00 0.00 3.91
830 939 2.283298 CACGCTGGAGTTTCATATGCT 58.717 47.619 0.00 0.00 0.00 3.79
831 940 1.331756 CCACGCTGGAGTTTCATATGC 59.668 52.381 0.00 0.00 40.96 3.14
832 941 2.905075 TCCACGCTGGAGTTTCATATG 58.095 47.619 0.00 0.00 42.67 1.78
843 952 1.593006 GAAACGACATATCCACGCTGG 59.407 52.381 0.00 0.00 39.43 4.85
844 953 2.267426 TGAAACGACATATCCACGCTG 58.733 47.619 0.00 0.00 0.00 5.18
858 967 1.326548 GGCGGCTGTAGTTATGAAACG 59.673 52.381 0.00 0.00 40.73 3.60
886 995 0.604578 ACACAGCCCATGTTTGCATC 59.395 50.000 0.00 0.00 41.41 3.91
891 1000 3.894427 TGAAATACACACAGCCCATGTTT 59.106 39.130 0.00 0.00 41.41 2.83
897 1006 2.084546 GACCTGAAATACACACAGCCC 58.915 52.381 0.00 0.00 0.00 5.19
899 1008 2.160417 GCAGACCTGAAATACACACAGC 59.840 50.000 0.47 0.00 0.00 4.40
901 1010 3.769739 AGCAGACCTGAAATACACACA 57.230 42.857 0.47 0.00 0.00 3.72
902 1011 4.083271 GGAAAGCAGACCTGAAATACACAC 60.083 45.833 0.47 0.00 0.00 3.82
903 1012 4.072131 GGAAAGCAGACCTGAAATACACA 58.928 43.478 0.47 0.00 0.00 3.72
904 1013 3.125316 CGGAAAGCAGACCTGAAATACAC 59.875 47.826 0.47 0.00 0.00 2.90
934 1043 4.572389 GCTCGACAAGAACATAATGATGGT 59.428 41.667 0.00 0.00 37.39 3.55
952 1061 2.068519 CAACTGCTACACATTGCTCGA 58.931 47.619 0.00 0.00 0.00 4.04
1004 1113 1.112113 CCATCGCCTAGTACACCAGT 58.888 55.000 0.00 0.00 0.00 4.00
1012 1121 1.679032 GGAGTTTTGCCATCGCCTAGT 60.679 52.381 0.00 0.00 0.00 2.57
1064 1173 2.419851 GCAGATGACCAAGAGGAGAAGG 60.420 54.545 0.00 0.00 38.69 3.46
1069 1180 3.795688 AAAAGCAGATGACCAAGAGGA 57.204 42.857 0.00 0.00 38.69 3.71
1079 1190 4.986659 GGGCAGCATAATTAAAAGCAGATG 59.013 41.667 0.00 2.66 0.00 2.90
1085 1196 5.812127 GGAAACAGGGCAGCATAATTAAAAG 59.188 40.000 0.00 0.00 0.00 2.27
1147 1267 0.035458 CTCTCGTTGGGTTTCCTGCT 59.965 55.000 0.00 0.00 0.00 4.24
1148 1268 1.578206 GCTCTCGTTGGGTTTCCTGC 61.578 60.000 0.00 0.00 0.00 4.85
1149 1269 0.250295 TGCTCTCGTTGGGTTTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
1309 1429 3.002791 TCAACATTCTTGAGATGCGGTC 58.997 45.455 0.00 0.00 0.00 4.79
1325 1445 3.466836 AGCATGTTCGAAAGAGTCAACA 58.533 40.909 0.00 0.00 43.69 3.33
1510 1630 9.041354 AGAAACAGAGTTGGAGTATAGAAGAAT 57.959 33.333 0.00 0.00 0.00 2.40
1517 1637 8.824756 AGATGTAGAAACAGAGTTGGAGTATA 57.175 34.615 0.00 0.00 39.49 1.47
1518 1638 7.726033 AGATGTAGAAACAGAGTTGGAGTAT 57.274 36.000 0.00 0.00 39.49 2.12
1597 1717 9.569122 GGGTTTGTTGGTACATATATCTACAAT 57.431 33.333 0.00 0.00 37.12 2.71
1600 1720 7.511268 TGGGGTTTGTTGGTACATATATCTAC 58.489 38.462 0.00 0.00 39.30 2.59
1846 1977 8.171164 AGCTTTTTGAGGTGGAATATTATAGC 57.829 34.615 0.00 0.00 34.08 2.97
1894 2025 8.746922 TTTGCTGATTATTTGAGAACAATGTC 57.253 30.769 0.00 0.00 35.85 3.06
1918 2049 2.818432 CAGATGACAAGAGCAAGCCTTT 59.182 45.455 0.00 0.00 0.00 3.11
1920 2051 1.627329 TCAGATGACAAGAGCAAGCCT 59.373 47.619 0.00 0.00 0.00 4.58
1921 2052 2.105006 TCAGATGACAAGAGCAAGCC 57.895 50.000 0.00 0.00 0.00 4.35
1954 2088 8.655970 TCGAAATTATGTGACAACAATAGACAG 58.344 33.333 0.00 0.00 40.46 3.51
2025 2159 2.978156 TCAAAGGAGCCCACAGAAAT 57.022 45.000 0.00 0.00 0.00 2.17
2029 2163 3.420893 TGTAATTCAAAGGAGCCCACAG 58.579 45.455 0.00 0.00 0.00 3.66
2031 2165 9.515226 TTATATATGTAATTCAAAGGAGCCCAC 57.485 33.333 0.00 0.00 0.00 4.61
2048 2182 8.034313 ACCACAGGTCAGAACATTATATATGT 57.966 34.615 0.00 0.00 0.00 2.29
2087 2221 5.480642 TCTGGGCATAAAATCAGCAAAAA 57.519 34.783 0.00 0.00 0.00 1.94
2088 2222 5.480642 TTCTGGGCATAAAATCAGCAAAA 57.519 34.783 0.00 0.00 0.00 2.44
2102 2236 2.780714 CCAAAATGCAAATTCTGGGCA 58.219 42.857 0.00 0.00 42.43 5.36
2107 2241 3.726607 TGAACGCCAAAATGCAAATTCT 58.273 36.364 0.00 0.00 0.00 2.40
2121 2256 9.562583 TTATAAACTTTATGAAACATGAACGCC 57.437 29.630 0.00 0.00 0.00 5.68
2172 2307 3.514706 ACTTTGATGCACCATAAATGCCA 59.485 39.130 0.00 0.00 42.69 4.92
2361 2496 4.080863 ACCTGGGACACTCAGATAATTGAC 60.081 45.833 0.00 0.00 34.36 3.18
2399 2534 1.688197 ACAATGCCCAGAAAACAGTGG 59.312 47.619 0.00 0.00 33.92 4.00
2408 2543 1.336440 CACGACAAAACAATGCCCAGA 59.664 47.619 0.00 0.00 0.00 3.86
2409 2544 1.066908 ACACGACAAAACAATGCCCAG 59.933 47.619 0.00 0.00 0.00 4.45
2412 2547 1.257675 GCAACACGACAAAACAATGCC 59.742 47.619 0.00 0.00 0.00 4.40
2413 2548 1.923204 TGCAACACGACAAAACAATGC 59.077 42.857 0.00 0.00 0.00 3.56
2414 2549 3.000872 CAGTGCAACACGACAAAACAATG 60.001 43.478 0.00 0.00 41.43 2.82
2415 2550 3.178267 CAGTGCAACACGACAAAACAAT 58.822 40.909 0.00 0.00 41.43 2.71
2416 2551 2.030717 ACAGTGCAACACGACAAAACAA 60.031 40.909 0.00 0.00 41.43 2.83
2417 2552 1.537638 ACAGTGCAACACGACAAAACA 59.462 42.857 0.00 0.00 41.43 2.83
2418 2553 2.256445 ACAGTGCAACACGACAAAAC 57.744 45.000 0.00 0.00 41.43 2.43
2419 2554 2.999507 AACAGTGCAACACGACAAAA 57.000 40.000 0.00 0.00 41.43 2.44
2420 2555 2.414824 GGAAACAGTGCAACACGACAAA 60.415 45.455 0.00 0.00 41.43 2.83
2421 2556 1.131504 GGAAACAGTGCAACACGACAA 59.868 47.619 0.00 0.00 41.43 3.18
2422 2557 0.730265 GGAAACAGTGCAACACGACA 59.270 50.000 0.00 0.00 41.43 4.35
2423 2558 1.014352 AGGAAACAGTGCAACACGAC 58.986 50.000 0.00 0.00 41.43 4.34
2424 2559 1.745232 AAGGAAACAGTGCAACACGA 58.255 45.000 0.00 0.00 41.43 4.35
2425 2560 2.450160 GAAAGGAAACAGTGCAACACG 58.550 47.619 0.00 0.00 41.43 4.49
2426 2561 2.450160 CGAAAGGAAACAGTGCAACAC 58.550 47.619 0.00 0.00 41.43 3.32
2427 2562 1.202245 GCGAAAGGAAACAGTGCAACA 60.202 47.619 0.00 0.00 41.43 3.33
2428 2563 1.202245 TGCGAAAGGAAACAGTGCAAC 60.202 47.619 0.00 0.00 0.00 4.17
2429 2564 1.098869 TGCGAAAGGAAACAGTGCAA 58.901 45.000 0.00 0.00 0.00 4.08
2430 2565 1.098869 TTGCGAAAGGAAACAGTGCA 58.901 45.000 0.00 0.00 38.96 4.57
2431 2566 2.422276 ATTGCGAAAGGAAACAGTGC 57.578 45.000 0.00 0.00 46.98 4.40
2432 2567 3.502211 AGGTATTGCGAAAGGAAACAGTG 59.498 43.478 0.00 0.00 46.98 3.66
2433 2568 3.751518 AGGTATTGCGAAAGGAAACAGT 58.248 40.909 0.00 0.00 46.98 3.55
2434 2569 4.766404 AAGGTATTGCGAAAGGAAACAG 57.234 40.909 0.00 0.00 46.98 3.16
2435 2570 4.825085 AGAAAGGTATTGCGAAAGGAAACA 59.175 37.500 0.00 0.00 46.98 2.83
2436 2571 5.372547 AGAAAGGTATTGCGAAAGGAAAC 57.627 39.130 0.00 0.00 46.98 2.78
2437 2572 5.278758 CCAAGAAAGGTATTGCGAAAGGAAA 60.279 40.000 0.00 0.00 46.98 3.13
2439 2574 3.756434 CCAAGAAAGGTATTGCGAAAGGA 59.244 43.478 0.00 0.00 0.00 3.36
2440 2575 3.673323 GCCAAGAAAGGTATTGCGAAAGG 60.673 47.826 0.00 0.00 0.00 3.11
2441 2576 3.057596 TGCCAAGAAAGGTATTGCGAAAG 60.058 43.478 0.00 0.00 0.00 2.62
2442 2577 2.887783 TGCCAAGAAAGGTATTGCGAAA 59.112 40.909 0.00 0.00 0.00 3.46
2443 2578 2.509569 TGCCAAGAAAGGTATTGCGAA 58.490 42.857 0.00 0.00 0.00 4.70
2444 2579 2.192664 TGCCAAGAAAGGTATTGCGA 57.807 45.000 0.00 0.00 0.00 5.10
2445 2580 3.508744 AATGCCAAGAAAGGTATTGCG 57.491 42.857 0.00 0.00 41.57 4.85
2465 2600 9.016438 ACAGTGGAAGTAAAGTGAAAGTAAAAA 57.984 29.630 0.00 0.00 0.00 1.94
2466 2601 8.570068 ACAGTGGAAGTAAAGTGAAAGTAAAA 57.430 30.769 0.00 0.00 0.00 1.52
2467 2602 8.570068 AACAGTGGAAGTAAAGTGAAAGTAAA 57.430 30.769 0.00 0.00 0.00 2.01
2468 2603 8.570068 AAACAGTGGAAGTAAAGTGAAAGTAA 57.430 30.769 0.00 0.00 0.00 2.24
2469 2604 7.281549 GGAAACAGTGGAAGTAAAGTGAAAGTA 59.718 37.037 0.00 0.00 0.00 2.24
2470 2605 6.095021 GGAAACAGTGGAAGTAAAGTGAAAGT 59.905 38.462 0.00 0.00 0.00 2.66
2471 2606 6.318900 AGGAAACAGTGGAAGTAAAGTGAAAG 59.681 38.462 0.00 0.00 0.00 2.62
2472 2607 6.184789 AGGAAACAGTGGAAGTAAAGTGAAA 58.815 36.000 0.00 0.00 0.00 2.69
2473 2608 5.751586 AGGAAACAGTGGAAGTAAAGTGAA 58.248 37.500 0.00 0.00 0.00 3.18
2474 2609 5.367945 AGGAAACAGTGGAAGTAAAGTGA 57.632 39.130 0.00 0.00 0.00 3.41
2475 2610 6.318900 AGAAAGGAAACAGTGGAAGTAAAGTG 59.681 38.462 0.00 0.00 0.00 3.16
2476 2611 6.424032 AGAAAGGAAACAGTGGAAGTAAAGT 58.576 36.000 0.00 0.00 0.00 2.66
2477 2612 6.944234 AGAAAGGAAACAGTGGAAGTAAAG 57.056 37.500 0.00 0.00 0.00 1.85
2478 2613 8.050930 ACTAAGAAAGGAAACAGTGGAAGTAAA 58.949 33.333 0.00 0.00 0.00 2.01
2479 2614 7.571025 ACTAAGAAAGGAAACAGTGGAAGTAA 58.429 34.615 0.00 0.00 0.00 2.24
2480 2615 7.133133 ACTAAGAAAGGAAACAGTGGAAGTA 57.867 36.000 0.00 0.00 0.00 2.24
2481 2616 6.002653 ACTAAGAAAGGAAACAGTGGAAGT 57.997 37.500 0.00 0.00 0.00 3.01
2482 2617 6.427242 GGTACTAAGAAAGGAAACAGTGGAAG 59.573 42.308 0.00 0.00 0.00 3.46
2483 2618 6.100714 AGGTACTAAGAAAGGAAACAGTGGAA 59.899 38.462 0.00 0.00 36.02 3.53
2484 2619 5.605488 AGGTACTAAGAAAGGAAACAGTGGA 59.395 40.000 0.00 0.00 36.02 4.02
2485 2620 5.866207 AGGTACTAAGAAAGGAAACAGTGG 58.134 41.667 0.00 0.00 36.02 4.00
2486 2621 6.766467 ACAAGGTACTAAGAAAGGAAACAGTG 59.234 38.462 0.00 0.00 38.49 3.66
2487 2622 6.896883 ACAAGGTACTAAGAAAGGAAACAGT 58.103 36.000 0.00 0.00 38.49 3.55
2488 2623 7.803279 AACAAGGTACTAAGAAAGGAAACAG 57.197 36.000 0.00 0.00 38.49 3.16
2489 2624 8.266473 TGTAACAAGGTACTAAGAAAGGAAACA 58.734 33.333 0.00 0.00 38.49 2.83
2490 2625 8.667076 TGTAACAAGGTACTAAGAAAGGAAAC 57.333 34.615 0.00 0.00 38.49 2.78
2491 2626 7.935210 CCTGTAACAAGGTACTAAGAAAGGAAA 59.065 37.037 0.00 0.00 38.49 3.13
2492 2627 7.447594 CCTGTAACAAGGTACTAAGAAAGGAA 58.552 38.462 0.00 0.00 38.49 3.36
2493 2628 6.013984 CCCTGTAACAAGGTACTAAGAAAGGA 60.014 42.308 0.00 0.00 38.49 3.36
2494 2629 6.171213 CCCTGTAACAAGGTACTAAGAAAGG 58.829 44.000 0.00 0.00 38.49 3.11
2495 2630 5.642491 GCCCTGTAACAAGGTACTAAGAAAG 59.358 44.000 0.00 0.00 38.49 2.62
2496 2631 5.072058 TGCCCTGTAACAAGGTACTAAGAAA 59.928 40.000 0.00 0.00 38.49 2.52
2497 2632 4.594062 TGCCCTGTAACAAGGTACTAAGAA 59.406 41.667 0.00 0.00 38.49 2.52
2498 2633 4.161876 TGCCCTGTAACAAGGTACTAAGA 58.838 43.478 0.00 0.00 38.49 2.10
2499 2634 4.546829 TGCCCTGTAACAAGGTACTAAG 57.453 45.455 0.00 0.00 38.49 2.18
2500 2635 5.221966 ACAATGCCCTGTAACAAGGTACTAA 60.222 40.000 0.00 0.00 38.49 2.24
2501 2636 4.287585 ACAATGCCCTGTAACAAGGTACTA 59.712 41.667 0.00 0.00 38.49 1.82
2503 2638 3.418047 ACAATGCCCTGTAACAAGGTAC 58.582 45.455 0.00 0.00 35.34 3.34
2504 2639 3.799432 ACAATGCCCTGTAACAAGGTA 57.201 42.857 0.00 0.00 35.34 3.08
2505 2640 2.675658 ACAATGCCCTGTAACAAGGT 57.324 45.000 0.00 0.00 35.34 3.50
2506 2641 4.057432 CAAAACAATGCCCTGTAACAAGG 58.943 43.478 0.00 0.00 37.05 3.61
2507 2642 4.692228 ACAAAACAATGCCCTGTAACAAG 58.308 39.130 0.00 0.00 0.00 3.16
2508 2643 4.744795 ACAAAACAATGCCCTGTAACAA 57.255 36.364 0.00 0.00 0.00 2.83
2511 2646 4.081420 ACACAACAAAACAATGCCCTGTAA 60.081 37.500 0.00 0.00 0.00 2.41
2706 2842 7.649306 GCTTGTTTCAGAACACTAACATGAATT 59.351 33.333 0.00 0.00 45.01 2.17
2742 2878 3.370840 AAATACAAGAGCATCAGGGCA 57.629 42.857 0.00 0.00 37.82 5.36
2793 2929 7.509546 AGAGGTCAAGAAATTAGTCAACTTCA 58.490 34.615 0.00 0.00 0.00 3.02
2890 3026 2.990066 AATGATCGACTCCAAGGTCC 57.010 50.000 0.00 0.00 33.07 4.46
2937 3073 7.239271 CAGAACAATGTGTTATGCTAAGTGAG 58.761 38.462 3.10 0.00 41.71 3.51
2952 3088 1.967319 ACGCTCCAACAGAACAATGT 58.033 45.000 0.00 0.00 33.96 2.71
2969 3105 4.242475 TCATGTTAGCAAGTCACCTAACG 58.758 43.478 0.00 0.00 43.86 3.18
3031 3167 2.443255 ACCAGGTTGTGAGATTTCCAGT 59.557 45.455 0.00 0.00 0.00 4.00
3061 3197 3.152341 CTGCCATGTCAATCCCTTATCC 58.848 50.000 0.00 0.00 0.00 2.59
3173 3309 7.836685 ACGAGGTATGGTATGAGATGAGATAAT 59.163 37.037 0.00 0.00 0.00 1.28
3174 3310 7.175797 ACGAGGTATGGTATGAGATGAGATAA 58.824 38.462 0.00 0.00 0.00 1.75
3175 3311 6.722328 ACGAGGTATGGTATGAGATGAGATA 58.278 40.000 0.00 0.00 0.00 1.98
3176 3312 5.575157 ACGAGGTATGGTATGAGATGAGAT 58.425 41.667 0.00 0.00 0.00 2.75
3178 3314 5.465051 CAACGAGGTATGGTATGAGATGAG 58.535 45.833 0.00 0.00 0.00 2.90
3238 3374 4.408821 GGATCCGTGCACCAGCCA 62.409 66.667 12.15 0.00 41.13 4.75
3289 3425 1.963338 ACAAGTCAGCTGCGAAGGC 60.963 57.895 9.47 0.00 40.52 4.35
3293 3429 1.068588 AGTAACACAAGTCAGCTGCGA 59.931 47.619 9.47 0.00 0.00 5.10
3321 3457 5.969086 AGGCCCTTTTTCCACATATATCAT 58.031 37.500 0.00 0.00 0.00 2.45
3329 3465 2.091555 ACAGTTAGGCCCTTTTTCCACA 60.092 45.455 0.00 0.00 0.00 4.17
3334 3470 4.736473 ACATACACAGTTAGGCCCTTTTT 58.264 39.130 0.00 0.00 0.00 1.94
3389 3525 2.435069 CCATGCATCTCTGGAGAAGACT 59.565 50.000 0.00 0.00 41.36 3.24
3444 3580 4.172505 CAGAGGAAAGAAGATGACAGACG 58.827 47.826 0.00 0.00 0.00 4.18
3445 3581 5.047377 AGACAGAGGAAAGAAGATGACAGAC 60.047 44.000 0.00 0.00 0.00 3.51
3447 3583 5.170021 CAGACAGAGGAAAGAAGATGACAG 58.830 45.833 0.00 0.00 0.00 3.51
3448 3584 4.590647 ACAGACAGAGGAAAGAAGATGACA 59.409 41.667 0.00 0.00 0.00 3.58
3449 3585 5.146010 ACAGACAGAGGAAAGAAGATGAC 57.854 43.478 0.00 0.00 0.00 3.06
3450 3586 5.305386 TGAACAGACAGAGGAAAGAAGATGA 59.695 40.000 0.00 0.00 0.00 2.92
3456 3593 4.405680 TGAAGTGAACAGACAGAGGAAAGA 59.594 41.667 0.00 0.00 0.00 2.52
3457 3594 4.697514 TGAAGTGAACAGACAGAGGAAAG 58.302 43.478 0.00 0.00 0.00 2.62
3466 3603 4.386049 CACGAGGTATTGAAGTGAACAGAC 59.614 45.833 0.00 0.00 35.03 3.51
3467 3604 4.038763 ACACGAGGTATTGAAGTGAACAGA 59.961 41.667 0.69 0.00 36.71 3.41
3469 3606 4.055360 CACACGAGGTATTGAAGTGAACA 58.945 43.478 0.69 0.00 36.71 3.18
3470 3607 3.120649 GCACACGAGGTATTGAAGTGAAC 60.121 47.826 0.69 0.00 36.71 3.18
3473 3610 1.732259 GGCACACGAGGTATTGAAGTG 59.268 52.381 0.00 0.00 38.63 3.16
3474 3611 1.623811 AGGCACACGAGGTATTGAAGT 59.376 47.619 0.00 0.00 0.00 3.01
3475 3612 2.002586 CAGGCACACGAGGTATTGAAG 58.997 52.381 0.00 0.00 0.00 3.02
3476 3613 1.621317 TCAGGCACACGAGGTATTGAA 59.379 47.619 0.00 0.00 0.00 2.69
3477 3614 1.262417 TCAGGCACACGAGGTATTGA 58.738 50.000 0.00 0.00 0.00 2.57
3478 3615 2.315925 ATCAGGCACACGAGGTATTG 57.684 50.000 0.00 0.00 0.00 1.90
3479 3616 3.898123 AGATATCAGGCACACGAGGTATT 59.102 43.478 5.32 0.00 0.00 1.89
3482 3619 1.410517 CAGATATCAGGCACACGAGGT 59.589 52.381 5.32 0.00 0.00 3.85
3483 3620 1.871408 GCAGATATCAGGCACACGAGG 60.871 57.143 12.84 0.00 0.00 4.63
3484 3621 1.068281 AGCAGATATCAGGCACACGAG 59.932 52.381 18.11 0.00 0.00 4.18
3485 3622 1.067669 GAGCAGATATCAGGCACACGA 59.932 52.381 18.11 0.00 0.00 4.35
3486 3623 1.495878 GAGCAGATATCAGGCACACG 58.504 55.000 18.11 0.00 0.00 4.49
3487 3624 1.202463 ACGAGCAGATATCAGGCACAC 60.202 52.381 18.11 10.00 0.00 3.82
3488 3625 1.067669 GACGAGCAGATATCAGGCACA 59.932 52.381 18.11 0.00 0.00 4.57
3489 3626 1.777101 GACGAGCAGATATCAGGCAC 58.223 55.000 18.11 12.41 0.00 5.01
3490 3627 0.312102 CGACGAGCAGATATCAGGCA 59.688 55.000 18.11 0.00 0.00 4.75
3491 3628 0.312416 ACGACGAGCAGATATCAGGC 59.688 55.000 0.00 8.32 0.00 4.85
3492 3629 2.389059 CAACGACGAGCAGATATCAGG 58.611 52.381 0.00 0.00 0.00 3.86
3494 3631 1.134175 TGCAACGACGAGCAGATATCA 59.866 47.619 13.93 0.00 35.51 2.15
3495 3632 1.840181 TGCAACGACGAGCAGATATC 58.160 50.000 13.93 0.00 35.51 1.63
3502 3639 0.093705 GTCATTCTGCAACGACGAGC 59.906 55.000 0.00 5.94 0.00 5.03
3503 3640 1.702886 AGTCATTCTGCAACGACGAG 58.297 50.000 0.00 0.00 33.56 4.18
3504 3641 1.792367 CAAGTCATTCTGCAACGACGA 59.208 47.619 0.00 0.00 33.56 4.20
3505 3642 1.136252 CCAAGTCATTCTGCAACGACG 60.136 52.381 0.00 0.00 33.56 5.12
3506 3643 1.873591 ACCAAGTCATTCTGCAACGAC 59.126 47.619 0.00 0.00 0.00 4.34
3507 3644 2.254546 ACCAAGTCATTCTGCAACGA 57.745 45.000 0.00 0.00 0.00 3.85
3508 3645 2.290367 TGAACCAAGTCATTCTGCAACG 59.710 45.455 0.00 0.00 0.00 4.10
3542 3679 4.828939 ACACATTTCCTCAGAGCAAAATCA 59.171 37.500 0.00 0.00 0.00 2.57
3583 3720 9.479549 AGAAATATATCAATGTTTGACAAGGGT 57.520 29.630 0.00 0.00 43.48 4.34
3633 3771 7.778083 TGGTCGAGAGCTATTTAAATGACTAA 58.222 34.615 11.05 0.00 0.00 2.24
3636 3774 6.926272 AGATGGTCGAGAGCTATTTAAATGAC 59.074 38.462 11.05 7.36 0.00 3.06
3679 3817 5.581085 AGGCTGCAAAGAGTAAATACGTTAG 59.419 40.000 0.50 0.00 0.00 2.34
3811 3949 2.785269 TGATGTTCTATGATGGGGCCTT 59.215 45.455 0.84 0.00 0.00 4.35
3830 3968 5.811796 TGGTAGTAAGTGCTAGGTTTTGA 57.188 39.130 0.00 0.00 0.00 2.69
3878 4016 1.472662 CGTTCTCCACCTGTCCCTGT 61.473 60.000 0.00 0.00 0.00 4.00
3889 4027 4.388499 GCGCCTTCCCGTTCTCCA 62.388 66.667 0.00 0.00 0.00 3.86
3935 4073 1.916181 TGGAAGATCCCCCACTCTTTC 59.084 52.381 0.00 0.00 35.03 2.62
4010 4148 2.030628 GTGGACAAATGTTACGTTGGGG 60.031 50.000 0.00 0.00 0.00 4.96
4041 4179 7.390027 GGAGGATTAACAGCTGTGATGTATAT 58.610 38.462 22.49 2.04 0.00 0.86
4047 4188 3.118112 CAGGGAGGATTAACAGCTGTGAT 60.118 47.826 22.49 17.48 0.00 3.06
4050 4191 2.237392 GACAGGGAGGATTAACAGCTGT 59.763 50.000 15.25 15.25 0.00 4.40
4052 4193 1.840635 GGACAGGGAGGATTAACAGCT 59.159 52.381 0.00 0.00 0.00 4.24
4129 4270 8.573035 TGTATGCTCTACACGTATCATCAATAA 58.427 33.333 0.00 0.00 0.00 1.40
4176 4317 8.436778 AGCAAAAAGGGAGGTAACAAAATTAAT 58.563 29.630 0.00 0.00 41.41 1.40
4203 4369 8.153550 AGAGTAAAATGGGAGAAGCATATACAG 58.846 37.037 0.00 0.00 0.00 2.74
4294 4477 4.009675 TGTTCCATTGAGATTTTCCCGAG 58.990 43.478 0.00 0.00 0.00 4.63
4348 4531 6.913170 AGTTAATGTGCTTCTTTGGTGTATG 58.087 36.000 0.00 0.00 0.00 2.39
4349 4532 7.524717 AAGTTAATGTGCTTCTTTGGTGTAT 57.475 32.000 0.00 0.00 0.00 2.29
4437 4621 8.238060 ACTATATAGCCTTGGCTATCCATCTAT 58.762 37.037 30.47 21.16 43.05 1.98
4513 4729 8.786826 TTATCACATCGACCATTCTTTAGTTT 57.213 30.769 0.00 0.00 0.00 2.66
4528 4744 5.984695 TCCTTAGGGAGATTATCACATCG 57.015 43.478 0.00 0.00 36.57 3.84
4537 4753 5.292815 AGGATTGAGTTCCTTAGGGAGATT 58.707 41.667 0.00 0.00 43.88 2.40
4546 4762 2.617532 GCTGCAGAGGATTGAGTTCCTT 60.618 50.000 20.43 0.00 46.35 3.36
4555 4771 0.326427 AGGAGAGGCTGCAGAGGATT 60.326 55.000 20.43 0.00 0.00 3.01
4625 4842 2.363683 AGATTTGCTGTGGCTAAGCTC 58.636 47.619 12.16 3.47 43.77 4.09
4660 4878 1.550976 GAGGTGAGGAAGATGACGGTT 59.449 52.381 0.00 0.00 0.00 4.44
4664 4882 1.484240 CCCAGAGGTGAGGAAGATGAC 59.516 57.143 0.00 0.00 0.00 3.06
4776 5018 3.775654 GACCCTGAGCCTGACCCG 61.776 72.222 0.00 0.00 0.00 5.28
4809 5051 3.181329 TGTGAACCCCTACATGATGAGT 58.819 45.455 0.00 0.00 0.00 3.41
4907 5149 1.428912 AGGCCCCAAAAACTCATCTGA 59.571 47.619 0.00 0.00 0.00 3.27
4908 5150 1.547372 CAGGCCCCAAAAACTCATCTG 59.453 52.381 0.00 0.00 0.00 2.90
4921 5176 2.043953 GACACCATTCCAGGCCCC 60.044 66.667 0.00 0.00 0.00 5.80
4923 5178 1.450312 CTCGACACCATTCCAGGCC 60.450 63.158 0.00 0.00 0.00 5.19
4927 5182 1.627864 TCAGACTCGACACCATTCCA 58.372 50.000 0.00 0.00 0.00 3.53
4930 5185 3.193691 CCTACTTCAGACTCGACACCATT 59.806 47.826 0.00 0.00 0.00 3.16
4935 5190 3.082548 CCTTCCTACTTCAGACTCGACA 58.917 50.000 0.00 0.00 0.00 4.35
4937 5192 3.009253 ACTCCTTCCTACTTCAGACTCGA 59.991 47.826 0.00 0.00 0.00 4.04
4941 5196 3.055747 CCCAACTCCTTCCTACTTCAGAC 60.056 52.174 0.00 0.00 0.00 3.51
4945 5200 4.963628 ACTATCCCAACTCCTTCCTACTTC 59.036 45.833 0.00 0.00 0.00 3.01
4947 5202 4.628661 ACTATCCCAACTCCTTCCTACT 57.371 45.455 0.00 0.00 0.00 2.57
4954 5209 4.016479 TCTCAAGGTACTATCCCAACTCCT 60.016 45.833 0.00 0.00 38.49 3.69
4958 5213 5.934402 TCTTCTCAAGGTACTATCCCAAC 57.066 43.478 0.00 0.00 38.49 3.77
4959 5214 5.366768 CCATCTTCTCAAGGTACTATCCCAA 59.633 44.000 0.00 0.00 38.49 4.12
4961 5216 4.284746 CCCATCTTCTCAAGGTACTATCCC 59.715 50.000 0.00 0.00 38.49 3.85
4962 5217 4.284746 CCCCATCTTCTCAAGGTACTATCC 59.715 50.000 0.00 0.00 38.49 2.59
4963 5218 4.284746 CCCCCATCTTCTCAAGGTACTATC 59.715 50.000 0.00 0.00 38.49 2.08
4985 5255 2.867429 CGCATTTCAGATTCCAACACC 58.133 47.619 0.00 0.00 0.00 4.16
5062 5332 4.862371 TGAATCACTAATGGGGGTTTACC 58.138 43.478 0.00 0.00 39.11 2.85
5072 5342 6.442112 TCTCTACGATGCTGAATCACTAATG 58.558 40.000 0.00 0.00 34.68 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.