Multiple sequence alignment - TraesCS3A01G524200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G524200 chr3A 100.000 2339 0 0 1 2339 739188615 739190953 0.000000e+00 4320
1 TraesCS3A01G524200 chr3A 99.129 919 7 1 1421 2339 739198275 739199192 0.000000e+00 1652
2 TraesCS3A01G524200 chr3A 90.842 404 35 2 963 1364 545291334 545290931 7.350000e-150 540
3 TraesCS3A01G524200 chr3A 92.157 102 7 1 862 963 545299213 545299113 2.420000e-30 143
4 TraesCS3A01G524200 chr3B 98.907 915 10 0 1425 2339 20228179 20229093 0.000000e+00 1635
5 TraesCS3A01G524200 chr3B 98.477 919 13 1 1421 2339 20236260 20237177 0.000000e+00 1618
6 TraesCS3A01G524200 chr3B 93.909 706 40 1 1 703 167111954 167111249 0.000000e+00 1062
7 TraesCS3A01G524200 chr3B 92.768 401 29 0 960 1360 744397824 744398224 4.330000e-162 580
8 TraesCS3A01G524200 chr3B 92.714 398 29 0 963 1360 747502208 747501811 2.020000e-160 575
9 TraesCS3A01G524200 chr3B 91.184 397 35 0 963 1359 418734755 418734359 7.350000e-150 540
10 TraesCS3A01G524200 chr3B 91.176 170 13 1 696 865 562456544 562456377 1.810000e-56 230
11 TraesCS3A01G524200 chr3B 92.233 103 7 1 862 963 747502366 747502264 6.740000e-31 145
12 TraesCS3A01G524200 chr7A 98.473 917 14 0 1423 2339 42958491 42957575 0.000000e+00 1616
13 TraesCS3A01G524200 chr7A 98.140 860 14 2 1421 2279 42944592 42943734 0.000000e+00 1498
14 TraesCS3A01G524200 chr7A 97.015 67 1 1 2273 2339 618832967 618833032 6.830000e-21 111
15 TraesCS3A01G524200 chr5B 98.470 915 14 0 1425 2339 9183407 9182493 0.000000e+00 1613
16 TraesCS3A01G524200 chr5B 89.412 170 15 3 696 865 472376244 472376410 6.550000e-51 211
17 TraesCS3A01G524200 chr5B 92.929 99 7 0 862 960 472376440 472376538 6.740000e-31 145
18 TraesCS3A01G524200 chr2B 98.041 919 16 2 1421 2339 235699555 235698639 0.000000e+00 1596
19 TraesCS3A01G524200 chr2B 98.033 915 18 0 1425 2339 235707593 235706679 0.000000e+00 1591
20 TraesCS3A01G524200 chr2B 89.412 170 16 1 696 865 212016578 212016411 1.820000e-51 213
21 TraesCS3A01G524200 chrUn 98.248 856 14 1 1425 2279 358428524 358429379 0.000000e+00 1496
22 TraesCS3A01G524200 chrUn 89.418 189 19 1 1174 1361 92923774 92923962 1.080000e-58 237
23 TraesCS3A01G524200 chrUn 93.137 102 7 0 862 963 92923437 92923538 1.450000e-32 150
24 TraesCS3A01G524200 chr3D 94.193 706 38 1 1 703 573426586 573425881 0.000000e+00 1074
25 TraesCS3A01G524200 chr3D 93.918 707 39 2 1 703 3361033 3361739 0.000000e+00 1064
26 TraesCS3A01G524200 chr3D 93.089 709 42 4 1 703 29568653 29567946 0.000000e+00 1031
27 TraesCS3A01G524200 chr3D 92.807 709 44 4 1 703 29584238 29583531 0.000000e+00 1020
28 TraesCS3A01G524200 chr3D 92.666 709 44 4 1 703 29531713 29531007 0.000000e+00 1014
29 TraesCS3A01G524200 chr3D 90.547 402 38 0 960 1361 126364226 126364627 1.230000e-147 532
30 TraesCS3A01G524200 chr6D 94.051 706 39 1 1 703 49456664 49455959 0.000000e+00 1068
31 TraesCS3A01G524200 chr6D 91.563 403 33 1 960 1361 413277786 413278188 2.630000e-154 555
32 TraesCS3A01G524200 chr6D 90.588 170 14 1 696 865 413277434 413277601 8.410000e-55 224
33 TraesCS3A01G524200 chr1A 94.009 701 42 0 1 701 577786838 577786138 0.000000e+00 1062
34 TraesCS3A01G524200 chr6B 93.608 704 42 1 1 701 497227909 497227206 0.000000e+00 1048
35 TraesCS3A01G524200 chr6B 89.412 170 16 1 696 865 222676192 222676359 1.820000e-51 213
36 TraesCS3A01G524200 chr5D 92.875 407 27 2 963 1368 273067824 273067419 7.200000e-165 590
37 TraesCS3A01G524200 chr5D 91.765 170 12 1 696 865 273068180 273068013 3.890000e-58 235
38 TraesCS3A01G524200 chr5D 91.228 171 12 2 696 865 562352866 562353034 1.810000e-56 230
39 TraesCS3A01G524200 chr5D 89.412 170 16 1 696 865 420459182 420459349 1.820000e-51 213
40 TraesCS3A01G524200 chr5D 94.118 102 6 0 862 963 562410390 562410491 3.110000e-34 156
41 TraesCS3A01G524200 chr5D 93.939 99 6 0 862 960 420459380 420459478 1.450000e-32 150
42 TraesCS3A01G524200 chr1B 92.289 402 31 0 960 1361 611790546 611790947 2.610000e-159 571
43 TraesCS3A01G524200 chr1B 89.412 170 16 1 696 865 611790194 611790361 1.820000e-51 213
44 TraesCS3A01G524200 chr4A 90.299 402 39 0 960 1361 700459206 700459607 5.720000e-146 527
45 TraesCS3A01G524200 chr6A 93.939 99 6 0 862 960 371338288 371338386 1.450000e-32 150
46 TraesCS3A01G524200 chr2A 92.929 99 7 0 862 960 713914832 713914930 6.740000e-31 145
47 TraesCS3A01G524200 chr2A 96.721 61 2 0 2279 2339 96999395 96999335 4.110000e-18 102
48 TraesCS3A01G524200 chr1D 92.929 99 7 0 862 960 407809893 407809991 6.740000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G524200 chr3A 739188615 739190953 2338 False 4320.0 4320 100.0000 1 2339 1 chr3A.!!$F1 2338
1 TraesCS3A01G524200 chr3A 739198275 739199192 917 False 1652.0 1652 99.1290 1421 2339 1 chr3A.!!$F2 918
2 TraesCS3A01G524200 chr3B 20228179 20229093 914 False 1635.0 1635 98.9070 1425 2339 1 chr3B.!!$F1 914
3 TraesCS3A01G524200 chr3B 20236260 20237177 917 False 1618.0 1618 98.4770 1421 2339 1 chr3B.!!$F2 918
4 TraesCS3A01G524200 chr3B 167111249 167111954 705 True 1062.0 1062 93.9090 1 703 1 chr3B.!!$R1 702
5 TraesCS3A01G524200 chr3B 747501811 747502366 555 True 360.0 575 92.4735 862 1360 2 chr3B.!!$R4 498
6 TraesCS3A01G524200 chr7A 42957575 42958491 916 True 1616.0 1616 98.4730 1423 2339 1 chr7A.!!$R2 916
7 TraesCS3A01G524200 chr7A 42943734 42944592 858 True 1498.0 1498 98.1400 1421 2279 1 chr7A.!!$R1 858
8 TraesCS3A01G524200 chr5B 9182493 9183407 914 True 1613.0 1613 98.4700 1425 2339 1 chr5B.!!$R1 914
9 TraesCS3A01G524200 chr2B 235698639 235699555 916 True 1596.0 1596 98.0410 1421 2339 1 chr2B.!!$R2 918
10 TraesCS3A01G524200 chr2B 235706679 235707593 914 True 1591.0 1591 98.0330 1425 2339 1 chr2B.!!$R3 914
11 TraesCS3A01G524200 chrUn 358428524 358429379 855 False 1496.0 1496 98.2480 1425 2279 1 chrUn.!!$F1 854
12 TraesCS3A01G524200 chr3D 573425881 573426586 705 True 1074.0 1074 94.1930 1 703 1 chr3D.!!$R4 702
13 TraesCS3A01G524200 chr3D 3361033 3361739 706 False 1064.0 1064 93.9180 1 703 1 chr3D.!!$F1 702
14 TraesCS3A01G524200 chr3D 29567946 29568653 707 True 1031.0 1031 93.0890 1 703 1 chr3D.!!$R2 702
15 TraesCS3A01G524200 chr3D 29583531 29584238 707 True 1020.0 1020 92.8070 1 703 1 chr3D.!!$R3 702
16 TraesCS3A01G524200 chr3D 29531007 29531713 706 True 1014.0 1014 92.6660 1 703 1 chr3D.!!$R1 702
17 TraesCS3A01G524200 chr6D 49455959 49456664 705 True 1068.0 1068 94.0510 1 703 1 chr6D.!!$R1 702
18 TraesCS3A01G524200 chr6D 413277434 413278188 754 False 389.5 555 91.0755 696 1361 2 chr6D.!!$F1 665
19 TraesCS3A01G524200 chr1A 577786138 577786838 700 True 1062.0 1062 94.0090 1 701 1 chr1A.!!$R1 700
20 TraesCS3A01G524200 chr6B 497227206 497227909 703 True 1048.0 1048 93.6080 1 701 1 chr6B.!!$R1 700
21 TraesCS3A01G524200 chr5D 273067419 273068180 761 True 412.5 590 92.3200 696 1368 2 chr5D.!!$R1 672
22 TraesCS3A01G524200 chr1B 611790194 611790947 753 False 392.0 571 90.8505 696 1361 2 chr1B.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 669 0.321671 ATATGATCCGGCCCGTCTTG 59.678 55.0 0.85 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2197 1.801302 AAGGAGAGACGGAGGGGACA 61.801 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 9.793252 CTAAACACTAAATTTTGATCATCAGGG 57.207 33.333 6.63 0.0 0.00 4.45
255 256 5.705397 ATTTTGATCATCAGGGAGACTCA 57.295 39.130 4.53 0.0 0.00 3.41
260 261 6.070951 TGATCATCAGGGAGACTCATTTTT 57.929 37.500 4.53 0.0 0.00 1.94
338 339 2.983592 CCACTGTTTGGGGGCGAC 60.984 66.667 0.00 0.0 42.54 5.19
356 357 1.964373 CGGGACCCCAAACTTCACG 60.964 63.158 4.46 0.0 35.37 4.35
366 367 1.032014 AAACTTCACGTGCTTGGCAT 58.968 45.000 11.67 0.0 41.91 4.40
404 405 1.364626 CGTGCTCCAGTTGCTCATCC 61.365 60.000 0.00 0.0 0.00 3.51
429 430 0.611896 CAACCTTTTCCATCGGCCCT 60.612 55.000 0.00 0.0 0.00 5.19
591 598 3.385384 CAGCAGCAGGGGTCTCGA 61.385 66.667 0.00 0.0 0.00 4.04
639 650 0.996583 CCCCTTAACCCCTACAGCAA 59.003 55.000 0.00 0.0 0.00 3.91
640 651 1.569072 CCCCTTAACCCCTACAGCAAT 59.431 52.381 0.00 0.0 0.00 3.56
641 652 2.781174 CCCCTTAACCCCTACAGCAATA 59.219 50.000 0.00 0.0 0.00 1.90
658 669 0.321671 ATATGATCCGGCCCGTCTTG 59.678 55.000 0.85 0.0 0.00 3.02
662 673 2.377628 GATCCGGCCCGTCTTGCATA 62.378 60.000 0.85 0.0 0.00 3.14
666 677 1.377987 GGCCCGTCTTGCATACCAA 60.378 57.895 0.00 0.0 0.00 3.67
704 715 0.841961 CATCATGGAGGGAGAGGCAA 59.158 55.000 0.00 0.0 0.00 4.52
705 716 0.842635 ATCATGGAGGGAGAGGCAAC 59.157 55.000 0.00 0.0 0.00 4.17
708 719 1.064166 CATGGAGGGAGAGGCAACATT 60.064 52.381 0.00 0.0 41.41 2.71
711 722 2.647299 TGGAGGGAGAGGCAACATTTTA 59.353 45.455 0.00 0.0 41.41 1.52
745 756 5.511386 ACTCCTTCCAGATCAAGATTTGT 57.489 39.130 0.00 0.0 0.00 2.83
756 767 6.040054 CAGATCAAGATTTGTGCATTATGGGA 59.960 38.462 0.00 0.0 0.00 4.37
814 825 5.936956 GCTTGATATCTATGGTGGGAAAGAG 59.063 44.000 3.98 0.0 0.00 2.85
823 834 4.750833 TGGTGGGAAAGAGGGAAATTAA 57.249 40.909 0.00 0.0 0.00 1.40
839 850 8.601546 AGGGAAATTAATGCACAAGGAATTAAA 58.398 29.630 0.00 0.0 31.50 1.52
870 915 5.008316 TGCAACTCAGATATCAATGCATCAC 59.992 40.000 0.00 0.0 37.40 3.06
908 954 0.686789 AAAAGGAGGGTTGGCAATGC 59.313 50.000 1.92 0.0 0.00 3.56
952 998 2.293122 TCAATGTTGACGCCTCTTTTGG 59.707 45.455 0.00 0.0 31.01 3.28
961 1064 1.188863 GCCTCTTTTGGCCATGACAT 58.811 50.000 6.09 0.0 46.82 3.06
988 1091 4.471904 AATGGAAAGATCGACTACTGCA 57.528 40.909 0.00 0.0 0.00 4.41
1034 1137 5.595952 CCTTAGCTCTCAAATTTGGCCTAAT 59.404 40.000 17.90 6.6 0.00 1.73
1061 1164 2.378038 GCAAAGGGCAGGATGTAATCA 58.622 47.619 0.00 0.0 44.17 2.57
1084 1187 8.078060 TCACCTAATCATCAACTCTGACAATA 57.922 34.615 0.00 0.0 33.30 1.90
1096 1199 5.923204 ACTCTGACAATATGGAGGTGATTC 58.077 41.667 0.00 0.0 0.00 2.52
1112 1215 0.904649 ATTCAGACCATGCAGGACGA 59.095 50.000 0.00 0.0 41.22 4.20
1183 1286 7.878036 TCACTATGCATGTGATTTTATCATGG 58.122 34.615 20.82 0.0 42.04 3.66
1273 1377 4.524316 TCTTCGACTTCGGATTGGTTTA 57.476 40.909 0.00 0.0 40.29 2.01
1311 1415 9.868277 AGTGAAATTGTAATGTTTCTCACAAAA 57.132 25.926 0.00 0.0 39.50 2.44
1375 1479 1.961793 AAAAAGGTAGCTCACACGCA 58.038 45.000 0.00 0.0 0.00 5.24
1376 1480 1.226746 AAAAGGTAGCTCACACGCAC 58.773 50.000 0.00 0.0 0.00 5.34
1377 1481 0.105964 AAAGGTAGCTCACACGCACA 59.894 50.000 0.00 0.0 0.00 4.57
1378 1482 0.600255 AAGGTAGCTCACACGCACAC 60.600 55.000 0.00 0.0 0.00 3.82
1379 1483 1.300620 GGTAGCTCACACGCACACA 60.301 57.895 0.00 0.0 0.00 3.72
1380 1484 0.670546 GGTAGCTCACACGCACACAT 60.671 55.000 0.00 0.0 0.00 3.21
1381 1485 1.148310 GTAGCTCACACGCACACATT 58.852 50.000 0.00 0.0 0.00 2.71
1382 1486 2.333926 GTAGCTCACACGCACACATTA 58.666 47.619 0.00 0.0 0.00 1.90
1383 1487 1.877637 AGCTCACACGCACACATTAA 58.122 45.000 0.00 0.0 0.00 1.40
1384 1488 2.426522 AGCTCACACGCACACATTAAT 58.573 42.857 0.00 0.0 0.00 1.40
1385 1489 2.813754 AGCTCACACGCACACATTAATT 59.186 40.909 0.00 0.0 0.00 1.40
1386 1490 3.120199 AGCTCACACGCACACATTAATTC 60.120 43.478 0.00 0.0 0.00 2.17
1387 1491 3.364864 GCTCACACGCACACATTAATTCA 60.365 43.478 0.00 0.0 0.00 2.57
1388 1492 4.672542 GCTCACACGCACACATTAATTCAT 60.673 41.667 0.00 0.0 0.00 2.57
1389 1493 4.721142 TCACACGCACACATTAATTCATG 58.279 39.130 0.00 0.0 0.00 3.07
1390 1494 4.215185 TCACACGCACACATTAATTCATGT 59.785 37.500 0.00 0.0 37.93 3.21
1419 1523 6.068461 TGAGGTAGTCATGAACTCTCTAGT 57.932 41.667 0.00 0.0 39.55 2.57
1420 1524 7.196637 TGAGGTAGTCATGAACTCTCTAGTA 57.803 40.000 0.00 0.0 39.55 1.82
1421 1525 7.276658 TGAGGTAGTCATGAACTCTCTAGTAG 58.723 42.308 0.00 0.0 39.55 2.57
2093 2197 2.204151 CCCTGGACCCCCTCACTT 60.204 66.667 0.00 0.0 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 3.619038 CGGCTGGTAGAAAAATGAGTCTC 59.381 47.826 0.00 0.00 0.00 3.36
255 256 2.084546 GAGCACGGCTGGTAGAAAAAT 58.915 47.619 2.98 0.00 39.88 1.82
260 261 2.052690 GGAGAGCACGGCTGGTAGA 61.053 63.158 2.98 0.00 39.88 2.59
309 310 1.890876 AACAGTGGCAGCGAAATGTA 58.109 45.000 0.77 0.00 0.00 2.29
338 339 1.964373 CGTGAAGTTTGGGGTCCCG 60.964 63.158 0.48 0.00 39.42 5.14
387 388 1.203441 AGGGATGAGCAACTGGAGCA 61.203 55.000 0.00 0.00 0.00 4.26
404 405 2.747446 CCGATGGAAAAGGTTGTACAGG 59.253 50.000 0.00 0.00 0.00 4.00
429 430 2.105477 GGGAGGCTGCTGAATCTATTCA 59.895 50.000 5.84 5.34 43.94 2.57
591 598 2.435069 CCTCCATCATCTTGAGTGCTCT 59.565 50.000 0.68 0.00 0.00 4.09
639 650 0.321671 CAAGACGGGCCGGATCATAT 59.678 55.000 31.78 6.80 0.00 1.78
640 651 1.745890 CAAGACGGGCCGGATCATA 59.254 57.895 31.78 0.00 0.00 2.15
641 652 2.505982 CAAGACGGGCCGGATCAT 59.494 61.111 31.78 9.87 0.00 2.45
658 669 2.940147 TGAACATTGCGTTTGGTATGC 58.060 42.857 0.00 0.00 38.19 3.14
662 673 2.884012 TGAGATGAACATTGCGTTTGGT 59.116 40.909 0.00 0.00 38.19 3.67
666 677 2.153645 TGCTGAGATGAACATTGCGTT 58.846 42.857 0.00 0.00 41.86 4.84
708 719 9.947189 TCTGGAAGGAGTAATAGGTATTCTAAA 57.053 33.333 0.00 0.00 0.00 1.85
711 722 8.235230 TGATCTGGAAGGAGTAATAGGTATTCT 58.765 37.037 0.00 0.00 0.00 2.40
756 767 8.345565 GCTATCATTTCTCGAACATTTTGGTAT 58.654 33.333 0.00 0.00 0.00 2.73
795 806 5.106631 TCCCTCTTTCCCACCATAGATAT 57.893 43.478 0.00 0.00 0.00 1.63
814 825 8.785329 TTTAATTCCTTGTGCATTAATTTCCC 57.215 30.769 0.00 0.00 0.00 3.97
823 834 6.759827 GCATTCTGATTTAATTCCTTGTGCAT 59.240 34.615 0.00 0.00 0.00 3.96
839 850 7.308649 GCATTGATATCTGAGTTGCATTCTGAT 60.309 37.037 18.49 18.49 37.16 2.90
952 998 2.658285 TCCATTTCCTCATGTCATGGC 58.342 47.619 12.90 0.00 35.31 4.40
961 1064 4.826274 AGTCGATCTTTCCATTTCCTCA 57.174 40.909 0.00 0.00 0.00 3.86
988 1091 3.369261 GCCTCTGTCATGAGAACATCTGT 60.369 47.826 0.00 0.00 36.23 3.41
1034 1137 0.544223 TCCTGCCCTTTGCGCTAATA 59.456 50.000 9.73 0.00 45.60 0.98
1061 1164 7.935755 CCATATTGTCAGAGTTGATGATTAGGT 59.064 37.037 0.00 0.00 35.39 3.08
1084 1187 2.422519 GCATGGTCTGAATCACCTCCAT 60.423 50.000 0.00 4.15 36.30 3.41
1096 1199 0.742281 CCTTCGTCCTGCATGGTCTG 60.742 60.000 0.00 0.00 37.07 3.51
1112 1215 2.948720 GCTCCCGCTGACTGTCCTT 61.949 63.158 5.17 0.00 0.00 3.36
1205 1308 7.408756 TCATGTGCTATTTTATTTGCCTCTT 57.591 32.000 0.00 0.00 0.00 2.85
1243 1346 5.640189 TCCGAAGTCGAAGAAAATCTAGT 57.360 39.130 1.43 0.00 43.02 2.57
1273 1377 9.014297 CATTACAATTTCACTAAGAGGTTCCTT 57.986 33.333 0.00 0.00 0.00 3.36
1361 1465 0.670546 ATGTGTGCGTGTGAGCTACC 60.671 55.000 0.00 0.00 38.13 3.18
1363 1467 2.734276 TAATGTGTGCGTGTGAGCTA 57.266 45.000 0.00 0.00 38.13 3.32
1364 1468 1.877637 TTAATGTGTGCGTGTGAGCT 58.122 45.000 0.00 0.00 38.13 4.09
1368 1472 4.475028 ACATGAATTAATGTGTGCGTGTG 58.525 39.130 7.70 0.00 39.32 3.82
1369 1473 4.764679 ACATGAATTAATGTGTGCGTGT 57.235 36.364 7.70 0.00 39.32 4.49
1394 1498 7.717436 TACTAGAGAGTTCATGACTACCTCATG 59.283 40.741 0.00 4.24 45.32 3.07
1395 1499 6.668645 ACTAGAGAGTTCATGACTACCTCAT 58.331 40.000 0.00 0.00 39.19 2.90
1396 1500 6.068461 ACTAGAGAGTTCATGACTACCTCA 57.932 41.667 0.00 0.00 39.19 3.86
1397 1501 7.225931 CACTACTAGAGAGTTCATGACTACCTC 59.774 44.444 0.00 1.85 39.19 3.85
1398 1502 7.051623 CACTACTAGAGAGTTCATGACTACCT 58.948 42.308 0.00 0.50 39.19 3.08
1399 1503 6.824704 ACACTACTAGAGAGTTCATGACTACC 59.175 42.308 0.00 0.00 39.19 3.18
1400 1504 7.334921 ACACACTACTAGAGAGTTCATGACTAC 59.665 40.741 0.00 0.00 39.19 2.73
1401 1505 7.395617 ACACACTACTAGAGAGTTCATGACTA 58.604 38.462 0.00 0.00 39.19 2.59
1402 1506 6.242396 ACACACTACTAGAGAGTTCATGACT 58.758 40.000 0.00 0.00 42.70 3.41
1403 1507 6.149640 TGACACACTACTAGAGAGTTCATGAC 59.850 42.308 0.00 0.00 37.10 3.06
1404 1508 6.149640 GTGACACACTACTAGAGAGTTCATGA 59.850 42.308 0.00 0.00 37.10 3.07
1405 1509 6.072452 TGTGACACACTACTAGAGAGTTCATG 60.072 42.308 3.56 1.05 35.11 3.07
1406 1510 6.004574 TGTGACACACTACTAGAGAGTTCAT 58.995 40.000 3.56 0.00 35.11 2.57
1407 1511 5.374071 TGTGACACACTACTAGAGAGTTCA 58.626 41.667 3.56 0.00 35.11 3.18
1408 1512 5.943706 TGTGACACACTACTAGAGAGTTC 57.056 43.478 3.56 0.00 35.11 3.01
1409 1513 5.416326 GGATGTGACACACTACTAGAGAGTT 59.584 44.000 11.22 0.00 35.11 3.01
1410 1514 4.944930 GGATGTGACACACTACTAGAGAGT 59.055 45.833 11.22 0.00 35.11 3.24
1411 1515 4.336993 GGGATGTGACACACTACTAGAGAG 59.663 50.000 11.22 0.00 35.11 3.20
1412 1516 4.018324 AGGGATGTGACACACTACTAGAGA 60.018 45.833 11.22 0.00 35.11 3.10
1413 1517 4.274147 AGGGATGTGACACACTACTAGAG 58.726 47.826 11.22 0.00 35.11 2.43
1414 1518 4.317530 AGGGATGTGACACACTACTAGA 57.682 45.455 11.22 0.00 35.11 2.43
1415 1519 4.036971 GCTAGGGATGTGACACACTACTAG 59.963 50.000 24.18 24.18 35.11 2.57
1416 1520 3.952323 GCTAGGGATGTGACACACTACTA 59.048 47.826 11.22 11.69 35.11 1.82
1417 1521 2.761208 GCTAGGGATGTGACACACTACT 59.239 50.000 11.22 11.17 35.11 2.57
1418 1522 2.761208 AGCTAGGGATGTGACACACTAC 59.239 50.000 11.22 5.63 35.11 2.73
1419 1523 3.101643 AGCTAGGGATGTGACACACTA 57.898 47.619 11.22 7.28 35.11 2.74
1420 1524 1.944177 AGCTAGGGATGTGACACACT 58.056 50.000 11.22 6.43 35.11 3.55
1421 1525 2.234908 AGAAGCTAGGGATGTGACACAC 59.765 50.000 11.22 5.08 34.56 3.82
2093 2197 1.801302 AAGGAGAGACGGAGGGGACA 61.801 60.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.