Multiple sequence alignment - TraesCS3A01G523200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G523200 chr3A 100.000 4807 0 0 1 4807 738711601 738706795 0.000000e+00 8877.0
1 TraesCS3A01G523200 chr3A 89.196 1518 155 7 2718 4231 738919647 738918135 0.000000e+00 1886.0
2 TraesCS3A01G523200 chr3A 90.698 1333 115 5 2901 4231 738678044 738676719 0.000000e+00 1766.0
3 TraesCS3A01G523200 chr3A 90.623 1333 116 5 2901 4231 738503373 738502048 0.000000e+00 1760.0
4 TraesCS3A01G523200 chr3A 87.508 1529 184 5 2703 4227 738692085 738690560 0.000000e+00 1759.0
5 TraesCS3A01G523200 chr3A 86.099 1633 210 16 2606 4226 738223783 738222156 0.000000e+00 1742.0
6 TraesCS3A01G523200 chr3A 87.015 593 36 18 4231 4803 738501996 738501425 8.780000e-177 630.0
7 TraesCS3A01G523200 chr3A 87.015 593 36 18 4231 4803 738676667 738676096 8.780000e-177 630.0
8 TraesCS3A01G523200 chr3A 90.769 325 24 5 348 667 658676363 658676686 3.440000e-116 429.0
9 TraesCS3A01G523200 chr3A 90.462 325 25 5 348 667 122289209 122289532 1.600000e-114 424.0
10 TraesCS3A01G523200 chr3A 79.833 600 84 18 4232 4803 738918083 738917493 2.080000e-108 403.0
11 TraesCS3A01G523200 chr3A 73.719 898 202 22 944 1819 738543989 738543104 2.160000e-83 320.0
12 TraesCS3A01G523200 chr3A 76.289 679 112 33 1875 2537 738224565 738223920 2.790000e-82 316.0
13 TraesCS3A01G523200 chr3A 78.669 511 76 17 2030 2514 738693034 738692531 4.670000e-80 309.0
14 TraesCS3A01G523200 chr3A 87.000 200 23 3 63 261 738240735 738240538 6.260000e-54 222.0
15 TraesCS3A01G523200 chr3A 84.848 165 25 0 2040 2204 738760374 738760210 2.980000e-37 167.0
16 TraesCS3A01G523200 chr3A 78.039 255 51 5 993 1243 738921064 738920811 6.440000e-34 156.0
17 TraesCS3A01G523200 chr3A 75.920 299 67 5 993 1287 738325930 738325633 1.080000e-31 148.0
18 TraesCS3A01G523200 chr3A 89.216 102 11 0 680 781 122289606 122289707 1.400000e-25 128.0
19 TraesCS3A01G523200 chr3D 94.237 4199 207 19 56 4231 605673715 605677901 0.000000e+00 6381.0
20 TraesCS3A01G523200 chr3D 91.542 1537 118 9 2702 4231 605973363 605974894 0.000000e+00 2108.0
21 TraesCS3A01G523200 chr3D 87.419 1383 164 8 2685 4060 605955240 605956619 0.000000e+00 1581.0
22 TraesCS3A01G523200 chr3D 87.500 200 21 4 55 253 606777492 606777296 1.350000e-55 228.0
23 TraesCS3A01G523200 chr3D 85.401 137 14 3 60 190 605704319 605704455 2.330000e-28 137.0
24 TraesCS3A01G523200 chr3D 85.714 126 11 3 786 906 606776697 606776574 5.050000e-25 126.0
25 TraesCS3A01G523200 chr3D 91.525 59 4 1 1 59 562467601 562467658 3.990000e-11 80.5
26 TraesCS3A01G523200 chr3B 92.693 3298 205 12 716 3993 816156540 816153259 0.000000e+00 4723.0
27 TraesCS3A01G523200 chr3B 85.657 1485 197 13 2622 4093 816172401 816170920 0.000000e+00 1548.0
28 TraesCS3A01G523200 chr3B 90.183 601 26 10 4232 4803 816039049 816038453 0.000000e+00 752.0
29 TraesCS3A01G523200 chr3B 88.421 190 22 0 4000 4189 816149928 816149739 3.740000e-56 230.0
30 TraesCS3A01G523200 chr3B 87.755 196 24 0 4000 4195 816151468 816151273 3.740000e-56 230.0
31 TraesCS3A01G523200 chr3B 100.000 48 0 0 1918 1965 147560682 147560635 6.630000e-14 89.8
32 TraesCS3A01G523200 chr5D 90.746 335 31 0 1105 1439 534545079 534544745 9.490000e-122 448.0
33 TraesCS3A01G523200 chr5D 88.657 335 38 0 1105 1439 534226020 534225686 4.480000e-110 409.0
34 TraesCS3A01G523200 chr5D 86.932 176 20 2 932 1104 534547197 534547022 1.370000e-45 195.0
35 TraesCS3A01G523200 chr5D 72.093 688 142 37 1041 1703 500140138 500139476 1.380000e-35 161.0
36 TraesCS3A01G523200 chr7A 91.692 325 21 5 348 667 339498650 339498973 3.410000e-121 446.0
37 TraesCS3A01G523200 chr7A 89.216 102 11 0 680 781 339499047 339499148 1.400000e-25 128.0
38 TraesCS3A01G523200 chr7A 87.879 66 8 0 1 66 714757392 714757327 1.430000e-10 78.7
39 TraesCS3A01G523200 chr1A 91.692 325 21 5 348 667 54884350 54884673 3.410000e-121 446.0
40 TraesCS3A01G523200 chr1A 90.769 325 24 5 348 667 195648239 195648562 3.440000e-116 429.0
41 TraesCS3A01G523200 chr1A 90.000 60 5 1 1 60 50781796 50781738 5.160000e-10 76.8
42 TraesCS3A01G523200 chr6A 91.385 325 22 5 348 667 467500288 467500611 1.590000e-119 440.0
43 TraesCS3A01G523200 chr6A 91.077 325 23 5 348 667 50730701 50730378 7.390000e-118 435.0
44 TraesCS3A01G523200 chr6A 88.889 99 11 0 680 778 50730304 50730206 6.530000e-24 122.0
45 TraesCS3A01G523200 chr2A 90.462 325 25 5 348 667 210824435 210824758 1.600000e-114 424.0
46 TraesCS3A01G523200 chr2A 88.235 102 12 0 680 781 737519158 737519259 6.530000e-24 122.0
47 TraesCS3A01G523200 chrUn 74.527 899 193 25 944 1819 313180480 313181365 4.570000e-95 359.0
48 TraesCS3A01G523200 chrUn 74.527 899 193 25 944 1819 333462474 333463359 4.570000e-95 359.0
49 TraesCS3A01G523200 chrUn 74.416 899 194 25 944 1819 42526245 42527130 2.130000e-93 353.0
50 TraesCS3A01G523200 chrUn 75.313 559 114 16 944 1485 373502608 373503159 3.720000e-61 246.0
51 TraesCS3A01G523200 chrUn 85.437 103 14 1 680 781 42329390 42329288 6.580000e-19 106.0
52 TraesCS3A01G523200 chrUn 85.437 103 14 1 680 781 391260081 391259979 6.580000e-19 106.0
53 TraesCS3A01G523200 chr5A 72.777 551 126 17 1160 1704 624725691 624725159 1.070000e-36 165.0
54 TraesCS3A01G523200 chr5A 92.857 56 4 0 1 56 24048057 24048002 1.110000e-11 82.4
55 TraesCS3A01G523200 chr5B 72.633 581 125 24 1134 1703 621479893 621479336 1.380000e-35 161.0
56 TraesCS3A01G523200 chr5B 93.220 59 4 0 1 59 6513728 6513670 2.380000e-13 87.9
57 TraesCS3A01G523200 chr5B 89.831 59 6 0 1 59 681979856 681979914 5.160000e-10 76.8
58 TraesCS3A01G523200 chr4A 88.073 109 11 1 932 1038 637521493 637521601 1.400000e-25 128.0
59 TraesCS3A01G523200 chr4A 88.235 102 12 0 680 781 636291919 636291818 6.530000e-24 122.0
60 TraesCS3A01G523200 chr4A 87.156 109 12 1 932 1038 637334279 637334387 6.530000e-24 122.0
61 TraesCS3A01G523200 chr4A 87.156 109 12 1 932 1038 637468509 637468617 6.530000e-24 122.0
62 TraesCS3A01G523200 chr4A 87.156 109 12 1 932 1038 637585504 637585612 6.530000e-24 122.0
63 TraesCS3A01G523200 chr7D 91.379 58 5 0 1 58 30011028 30010971 3.990000e-11 80.5
64 TraesCS3A01G523200 chr7D 91.071 56 5 0 1 56 34153056 34153001 5.160000e-10 76.8
65 TraesCS3A01G523200 chr7D 91.071 56 5 0 1 56 590519196 590519141 5.160000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G523200 chr3A 738706795 738711601 4806 True 8877.000000 8877 100.0000 1 4807 1 chr3A.!!$R4 4806
1 TraesCS3A01G523200 chr3A 738676096 738678044 1948 True 1198.000000 1766 88.8565 2901 4803 2 chr3A.!!$R8 1902
2 TraesCS3A01G523200 chr3A 738501425 738503373 1948 True 1195.000000 1760 88.8190 2901 4803 2 chr3A.!!$R7 1902
3 TraesCS3A01G523200 chr3A 738690560 738693034 2474 True 1034.000000 1759 83.0885 2030 4227 2 chr3A.!!$R9 2197
4 TraesCS3A01G523200 chr3A 738222156 738224565 2409 True 1029.000000 1742 81.1940 1875 4226 2 chr3A.!!$R6 2351
5 TraesCS3A01G523200 chr3A 738917493 738921064 3571 True 815.000000 1886 82.3560 993 4803 3 chr3A.!!$R10 3810
6 TraesCS3A01G523200 chr3A 738543104 738543989 885 True 320.000000 320 73.7190 944 1819 1 chr3A.!!$R3 875
7 TraesCS3A01G523200 chr3D 605673715 605677901 4186 False 6381.000000 6381 94.2370 56 4231 1 chr3D.!!$F2 4175
8 TraesCS3A01G523200 chr3D 605973363 605974894 1531 False 2108.000000 2108 91.5420 2702 4231 1 chr3D.!!$F5 1529
9 TraesCS3A01G523200 chr3D 605955240 605956619 1379 False 1581.000000 1581 87.4190 2685 4060 1 chr3D.!!$F4 1375
10 TraesCS3A01G523200 chr3B 816149739 816156540 6801 True 1727.666667 4723 89.6230 716 4195 3 chr3B.!!$R4 3479
11 TraesCS3A01G523200 chr3B 816170920 816172401 1481 True 1548.000000 1548 85.6570 2622 4093 1 chr3B.!!$R3 1471
12 TraesCS3A01G523200 chr3B 816038453 816039049 596 True 752.000000 752 90.1830 4232 4803 1 chr3B.!!$R2 571
13 TraesCS3A01G523200 chr5D 534544745 534547197 2452 True 321.500000 448 88.8390 932 1439 2 chr5D.!!$R3 507
14 TraesCS3A01G523200 chrUn 313180480 313181365 885 False 359.000000 359 74.5270 944 1819 1 chrUn.!!$F2 875
15 TraesCS3A01G523200 chrUn 333462474 333463359 885 False 359.000000 359 74.5270 944 1819 1 chrUn.!!$F3 875
16 TraesCS3A01G523200 chrUn 42526245 42527130 885 False 353.000000 353 74.4160 944 1819 1 chrUn.!!$F1 875
17 TraesCS3A01G523200 chrUn 373502608 373503159 551 False 246.000000 246 75.3130 944 1485 1 chrUn.!!$F4 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 764 0.109735 GCCACAAGAAAAGTAGCGGC 60.110 55.000 0.00 0.00 0.00 6.53 F
761 766 0.452784 CACAAGAAAAGTAGCGGCGC 60.453 55.000 26.86 26.86 0.00 6.53 F
1356 3325 0.474184 CCTCCTTCCGGCATACCATT 59.526 55.000 0.00 0.00 34.57 3.16 F
1857 3826 1.129251 CCATTGACACGTGATGAGTGC 59.871 52.381 25.01 2.82 42.94 4.40 F
2377 4388 1.412710 TCTAAGTTGCATAGAGGCCCG 59.587 52.381 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 4399 1.555075 ACTCACACAAGCATATCCGGT 59.445 47.619 0.00 0.00 0.00 5.28 R
2635 4962 2.703416 TGAAGCAGTACATCAGCCAAG 58.297 47.619 0.00 0.00 0.00 3.61 R
3174 5526 4.645956 GTCCGATAATACGTGTAGGATCG 58.354 47.826 13.62 13.62 35.30 3.69 R
3434 5787 3.057315 AGGAAAAACCATCACTTGCATCG 60.057 43.478 0.00 0.00 42.04 3.84 R
4155 9833 0.106167 ATCTACCGTGGCAGGCTAGA 60.106 55.000 13.00 13.00 32.58 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.399440 AAATACACGGTAACCACGGAA 57.601 42.857 0.00 0.00 35.23 4.30
21 22 3.399440 AATACACGGTAACCACGGAAA 57.601 42.857 0.00 0.00 35.23 3.13
22 23 2.898729 TACACGGTAACCACGGAAAA 57.101 45.000 0.00 0.00 35.23 2.29
23 24 2.259266 ACACGGTAACCACGGAAAAT 57.741 45.000 0.00 0.00 35.23 1.82
24 25 3.399440 ACACGGTAACCACGGAAAATA 57.601 42.857 0.00 0.00 35.23 1.40
25 26 3.328505 ACACGGTAACCACGGAAAATAG 58.671 45.455 0.00 0.00 35.23 1.73
26 27 3.244181 ACACGGTAACCACGGAAAATAGT 60.244 43.478 0.00 0.00 35.23 2.12
27 28 3.123959 CACGGTAACCACGGAAAATAGTG 59.876 47.826 0.00 0.00 38.05 2.74
28 29 3.006752 ACGGTAACCACGGAAAATAGTGA 59.993 43.478 0.00 0.00 40.56 3.41
29 30 3.995705 CGGTAACCACGGAAAATAGTGAA 59.004 43.478 0.00 0.00 40.56 3.18
30 31 4.451774 CGGTAACCACGGAAAATAGTGAAA 59.548 41.667 0.00 0.00 40.56 2.69
31 32 5.122711 CGGTAACCACGGAAAATAGTGAAAT 59.877 40.000 0.00 0.00 40.56 2.17
32 33 6.348704 CGGTAACCACGGAAAATAGTGAAATT 60.349 38.462 0.00 0.00 40.56 1.82
33 34 7.372714 GGTAACCACGGAAAATAGTGAAATTT 58.627 34.615 0.00 0.00 40.56 1.82
34 35 7.539710 GGTAACCACGGAAAATAGTGAAATTTC 59.460 37.037 11.41 11.41 40.56 2.17
35 36 5.695818 ACCACGGAAAATAGTGAAATTTCG 58.304 37.500 13.34 0.81 40.56 3.46
36 37 5.470777 ACCACGGAAAATAGTGAAATTTCGA 59.529 36.000 13.34 2.03 40.56 3.71
37 38 5.793457 CCACGGAAAATAGTGAAATTTCGAC 59.207 40.000 13.34 11.89 40.56 4.20
38 39 5.793457 CACGGAAAATAGTGAAATTTCGACC 59.207 40.000 13.34 4.25 40.56 4.79
39 40 5.019498 CGGAAAATAGTGAAATTTCGACCG 58.981 41.667 13.34 13.21 35.66 4.79
40 41 5.329493 GGAAAATAGTGAAATTTCGACCGG 58.671 41.667 13.34 0.00 34.63 5.28
41 42 5.106436 GGAAAATAGTGAAATTTCGACCGGT 60.106 40.000 6.92 6.92 34.63 5.28
42 43 6.092533 GGAAAATAGTGAAATTTCGACCGGTA 59.907 38.462 7.34 0.00 34.63 4.02
43 44 7.361116 GGAAAATAGTGAAATTTCGACCGGTAA 60.361 37.037 7.34 0.00 34.63 2.85
44 45 6.413018 AATAGTGAAATTTCGACCGGTAAC 57.587 37.500 7.34 0.00 0.00 2.50
45 46 3.069289 AGTGAAATTTCGACCGGTAACC 58.931 45.455 7.34 0.00 0.00 2.85
46 47 2.807392 GTGAAATTTCGACCGGTAACCA 59.193 45.455 7.34 0.00 0.00 3.67
47 48 3.250521 GTGAAATTTCGACCGGTAACCAA 59.749 43.478 7.34 0.00 0.00 3.67
48 49 3.881688 TGAAATTTCGACCGGTAACCAAA 59.118 39.130 7.34 4.53 0.00 3.28
49 50 4.337555 TGAAATTTCGACCGGTAACCAAAA 59.662 37.500 7.34 4.39 0.00 2.44
50 51 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
51 52 2.322355 TTCGACCGGTAACCAAAACA 57.678 45.000 7.34 0.00 0.00 2.83
52 53 1.868469 TCGACCGGTAACCAAAACAG 58.132 50.000 7.34 0.00 0.00 3.16
53 54 1.138661 TCGACCGGTAACCAAAACAGT 59.861 47.619 7.34 0.00 0.00 3.55
54 55 1.262151 CGACCGGTAACCAAAACAGTG 59.738 52.381 7.34 0.00 0.00 3.66
81 82 4.577693 GGCATTCAATGTCTATCTCTGCAA 59.422 41.667 0.00 0.00 30.66 4.08
127 128 3.364621 GCAATGCGGTTTATTGTGAACAG 59.635 43.478 0.00 0.00 37.73 3.16
170 171 1.993956 TGTCAACACCCCCTTTGATG 58.006 50.000 0.00 0.00 34.34 3.07
173 174 1.229177 AACACCCCCTTTGATGGGC 60.229 57.895 0.00 0.00 46.43 5.36
174 175 1.739608 AACACCCCCTTTGATGGGCT 61.740 55.000 0.00 0.00 46.43 5.19
175 176 0.849094 ACACCCCCTTTGATGGGCTA 60.849 55.000 0.00 0.00 46.43 3.93
177 178 0.253630 ACCCCCTTTGATGGGCTAGA 60.254 55.000 0.00 0.00 46.43 2.43
178 179 0.926293 CCCCCTTTGATGGGCTAGAA 59.074 55.000 0.00 0.00 45.78 2.10
179 180 1.500736 CCCCCTTTGATGGGCTAGAAT 59.499 52.381 0.00 0.00 45.78 2.40
180 181 2.716424 CCCCCTTTGATGGGCTAGAATA 59.284 50.000 0.00 0.00 45.78 1.75
181 182 3.334881 CCCCCTTTGATGGGCTAGAATAT 59.665 47.826 0.00 0.00 45.78 1.28
182 183 4.568592 CCCCCTTTGATGGGCTAGAATATC 60.569 50.000 0.00 0.00 45.78 1.63
183 184 4.043310 CCCCTTTGATGGGCTAGAATATCA 59.957 45.833 0.00 0.00 45.78 2.15
224 225 1.153667 CTGACTTGAGAGGCGGCTC 60.154 63.158 30.15 30.15 31.56 4.70
244 245 2.260869 GCGGCAGCAAGACCAGAAA 61.261 57.895 3.18 0.00 44.35 2.52
247 248 1.335324 CGGCAGCAAGACCAGAAAAAG 60.335 52.381 0.00 0.00 0.00 2.27
252 253 4.137543 CAGCAAGACCAGAAAAAGGTAGT 58.862 43.478 0.00 0.00 40.09 2.73
296 297 1.439679 CGGTGTCTTCTTACTTGGGC 58.560 55.000 0.00 0.00 0.00 5.36
300 301 3.369576 GGTGTCTTCTTACTTGGGCCTAG 60.370 52.174 13.66 13.66 0.00 3.02
310 311 1.561542 CTTGGGCCTAGTGTCTCCATT 59.438 52.381 4.53 0.00 0.00 3.16
395 396 5.045215 CCGTTCAACACTGACTACTGTTAA 58.955 41.667 0.00 0.00 0.00 2.01
454 455 7.644490 CACTAACTTGTAACAAGTGGCAAATA 58.356 34.615 0.00 0.00 35.12 1.40
517 518 8.090214 ACTGCAACATTGAATTAGCTAAAATGT 58.910 29.630 21.39 21.39 41.85 2.71
520 521 9.532697 GCAACATTGAATTAGCTAAAATGTTTG 57.467 29.630 28.79 24.93 44.75 2.93
556 558 2.741985 CGCGGTGTCCAATGCTGA 60.742 61.111 0.00 0.00 0.00 4.26
575 580 7.369803 TGCTGATGAGTTTCTGATTTAGTTC 57.630 36.000 0.00 0.00 0.00 3.01
689 694 1.357137 TGTGGTGACATGGGCTAGAA 58.643 50.000 0.00 0.00 46.14 2.10
757 762 3.485877 GCATAGCCACAAGAAAAGTAGCG 60.486 47.826 0.00 0.00 0.00 4.26
759 764 0.109735 GCCACAAGAAAAGTAGCGGC 60.110 55.000 0.00 0.00 0.00 6.53
761 766 0.452784 CACAAGAAAAGTAGCGGCGC 60.453 55.000 26.86 26.86 0.00 6.53
802 807 4.933400 GCAAATTGGCAATCTCACTTTCAT 59.067 37.500 14.04 0.00 0.00 2.57
843 852 1.545428 GCCACATCCACAGGAGTCAAA 60.545 52.381 0.00 0.00 34.05 2.69
844 853 2.154462 CCACATCCACAGGAGTCAAAC 58.846 52.381 0.00 0.00 34.05 2.93
852 861 3.466836 CACAGGAGTCAAACTGCAACTA 58.533 45.455 1.44 0.00 39.19 2.24
854 863 4.067896 ACAGGAGTCAAACTGCAACTATG 58.932 43.478 1.44 0.00 39.19 2.23
882 891 7.934457 ACCATTAATATGCAGACTTAAAGCTG 58.066 34.615 0.00 0.00 35.28 4.24
883 892 7.013655 ACCATTAATATGCAGACTTAAAGCTGG 59.986 37.037 0.00 4.22 32.83 4.85
1318 3275 0.801872 CGATGTGAATGGTTTCGGCA 59.198 50.000 0.00 0.00 34.39 5.69
1356 3325 0.474184 CCTCCTTCCGGCATACCATT 59.526 55.000 0.00 0.00 34.57 3.16
1374 3343 4.901250 ACCATTCCTTTGAAATCTGGTGTT 59.099 37.500 0.00 0.00 39.04 3.32
1492 3461 2.177580 AACGACAACACCGGCACAG 61.178 57.895 0.00 0.00 0.00 3.66
1541 3510 4.194678 TGGACCTAGGAATTACGGAGAT 57.805 45.455 17.98 0.00 0.00 2.75
1542 3511 3.895656 TGGACCTAGGAATTACGGAGATG 59.104 47.826 17.98 0.00 0.00 2.90
1550 3519 3.391049 GAATTACGGAGATGGTGGCTAC 58.609 50.000 0.00 0.00 0.00 3.58
1773 3742 3.737172 GCTGGCACGGTGCGAAAT 61.737 61.111 25.24 0.00 46.21 2.17
1857 3826 1.129251 CCATTGACACGTGATGAGTGC 59.871 52.381 25.01 2.82 42.94 4.40
1858 3827 1.799994 CATTGACACGTGATGAGTGCA 59.200 47.619 25.01 5.42 42.94 4.57
2158 4136 1.524008 GAGGGTTGTTTTGCGAGGGG 61.524 60.000 0.00 0.00 0.00 4.79
2377 4388 1.412710 TCTAAGTTGCATAGAGGCCCG 59.587 52.381 0.00 0.00 0.00 6.13
2388 4399 4.703897 CATAGAGGCCCGACAGAATAAAA 58.296 43.478 0.00 0.00 0.00 1.52
2390 4401 2.014857 GAGGCCCGACAGAATAAAACC 58.985 52.381 0.00 0.00 0.00 3.27
2516 4545 1.589803 ACGTCCAAAGTGGTTGTAGC 58.410 50.000 0.00 0.00 39.03 3.58
2630 4956 6.528537 TGTTTTATCATGCATGTAGGCTTT 57.471 33.333 25.43 6.53 34.04 3.51
2832 5175 3.067320 CCTCGCAAGACTGAGTATGATCA 59.933 47.826 0.00 0.00 45.01 2.92
2888 5234 6.876257 ACAGACTCTGCTTTTAGGTAAGAATG 59.124 38.462 5.92 0.00 34.37 2.67
3017 5369 4.548451 TCAGTGCATCACTTCTCATTCT 57.452 40.909 0.00 0.00 42.59 2.40
3102 5454 6.633634 GTCTTCTCCTAGAAACGTTGATATCG 59.366 42.308 0.00 0.00 33.19 2.92
3174 5526 4.639135 AGAGAAGGCAACAAACAACTTC 57.361 40.909 0.00 0.00 38.20 3.01
3189 5541 5.320549 ACAACTTCGATCCTACACGTATT 57.679 39.130 0.00 0.00 0.00 1.89
3240 5593 5.108187 ACAAAGGCATATGTCTGATCAGT 57.892 39.130 21.92 6.09 0.00 3.41
3290 5643 7.819560 AGGTCATTGAGCAATCTGAGATCAGA 61.820 42.308 17.46 14.57 43.42 3.27
3434 5787 3.188048 CACTGTCTGAAGTTCTTCATGCC 59.812 47.826 14.37 7.27 0.00 4.40
3492 5845 6.994496 TGATTATTTGAGGATTGCTCTCGAAT 59.006 34.615 6.74 10.32 43.74 3.34
3531 5884 6.580788 TCTTATCTCCATTCTTCAGCTTCAG 58.419 40.000 0.00 0.00 0.00 3.02
3602 5955 5.163237 TGGGAACTACACAGCTAAAGTTTCT 60.163 40.000 0.00 0.00 32.51 2.52
4036 9714 1.397672 TCTCAGCCAGATCCGAGAAG 58.602 55.000 0.00 0.00 31.73 2.85
4094 9772 4.772624 AGGAGTAGATATGCTCGGCAATTA 59.227 41.667 2.68 0.00 43.62 1.40
4155 9833 3.307339 GGAGGCAGAGTTCTTGTCATCTT 60.307 47.826 0.00 0.00 0.00 2.40
4163 9841 5.083533 AGTTCTTGTCATCTTCTAGCCTG 57.916 43.478 0.00 0.00 0.00 4.85
4169 9847 0.531532 CATCTTCTAGCCTGCCACGG 60.532 60.000 0.00 0.00 0.00 4.94
4227 9905 5.592104 TTTCTTTCCCTCTTTTGTGAACC 57.408 39.130 0.00 0.00 0.00 3.62
4228 9906 4.519906 TCTTTCCCTCTTTTGTGAACCT 57.480 40.909 0.00 0.00 0.00 3.50
4229 9907 4.207165 TCTTTCCCTCTTTTGTGAACCTG 58.793 43.478 0.00 0.00 0.00 4.00
4256 9985 5.556006 TCAGGCATCATGATTGTATCAGA 57.444 39.130 5.16 0.00 43.53 3.27
4316 10049 8.047310 ACACTGGTTTTAATTACCCAGAGATAG 58.953 37.037 22.68 13.18 45.97 2.08
4409 10143 3.057033 AGCAATGATTTTGAGCGCTCTTT 60.057 39.130 35.27 18.48 0.00 2.52
4420 10154 3.005261 TGAGCGCTCTTTTTATTTTGCCA 59.995 39.130 35.27 10.21 0.00 4.92
4445 10182 0.536233 ACCGTTGGTACATTGCTGCA 60.536 50.000 0.00 0.00 39.30 4.41
4472 10209 9.528018 TTTTCTTGGTGCTTCTTTTAATACAAG 57.472 29.630 0.00 0.00 35.41 3.16
4562 10301 6.100279 ACAGAAGGAGAATGCACTATATCCAA 59.900 38.462 11.04 0.00 30.64 3.53
4591 10338 2.017668 TTGTTGGGGCCCATCACACT 62.018 55.000 31.31 0.00 33.58 3.55
4598 10345 2.034532 CCCATCACACTGCTGCCA 59.965 61.111 0.00 0.00 0.00 4.92
4604 10351 0.983467 TCACACTGCTGCCATCCTTA 59.017 50.000 0.00 0.00 0.00 2.69
4631 10398 1.353694 AGACAGCAAAGGCCTCTGAAT 59.646 47.619 23.11 10.33 42.56 2.57
4669 10436 3.133691 TGTATGCTGAAATCGAGGATGC 58.866 45.455 0.00 0.00 0.00 3.91
4670 10437 2.634815 ATGCTGAAATCGAGGATGCT 57.365 45.000 0.00 0.00 0.00 3.79
4730 10497 0.698818 AGATGAACCCACTTGTCCCC 59.301 55.000 0.00 0.00 0.00 4.81
4743 10510 2.953284 TGTCCCCGGAAAATGTACAA 57.047 45.000 0.73 0.00 0.00 2.41
4751 10518 3.364964 CCGGAAAATGTACAAGTGCTCAC 60.365 47.826 0.00 0.00 0.00 3.51
4780 10549 8.262588 CGTGTTATCATTTTAGTCGATTCTCTG 58.737 37.037 0.00 0.00 0.00 3.35
4803 10572 6.051717 TGCATTTCTCTACTTTATCTCCAGC 58.948 40.000 0.00 0.00 0.00 4.85
4804 10573 5.176590 GCATTTCTCTACTTTATCTCCAGCG 59.823 44.000 0.00 0.00 0.00 5.18
4805 10574 4.920640 TTCTCTACTTTATCTCCAGCGG 57.079 45.455 0.00 0.00 0.00 5.52
4806 10575 3.899726 TCTCTACTTTATCTCCAGCGGT 58.100 45.455 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.399440 TTCCGTGGTTACCGTGTATTT 57.601 42.857 0.00 0.00 0.00 1.40
1 2 3.399440 TTTCCGTGGTTACCGTGTATT 57.601 42.857 0.00 0.00 0.00 1.89
5 6 3.123959 CACTATTTTCCGTGGTTACCGTG 59.876 47.826 0.00 0.00 0.00 4.94
8 9 5.945466 TTTCACTATTTTCCGTGGTTACC 57.055 39.130 0.00 0.00 0.00 2.85
9 10 7.269724 CGAAATTTCACTATTTTCCGTGGTTAC 59.730 37.037 17.99 0.00 0.00 2.50
10 11 7.172875 TCGAAATTTCACTATTTTCCGTGGTTA 59.827 33.333 17.99 0.00 0.00 2.85
13 14 5.793457 GTCGAAATTTCACTATTTTCCGTGG 59.207 40.000 17.99 0.00 0.00 4.94
14 15 5.793457 GGTCGAAATTTCACTATTTTCCGTG 59.207 40.000 17.99 0.00 0.00 4.94
15 16 5.390145 CGGTCGAAATTTCACTATTTTCCGT 60.390 40.000 17.99 0.00 35.06 4.69
16 17 5.019498 CGGTCGAAATTTCACTATTTTCCG 58.981 41.667 17.99 13.39 34.20 4.30
17 18 5.106436 ACCGGTCGAAATTTCACTATTTTCC 60.106 40.000 17.99 6.86 0.00 3.13
18 19 5.934921 ACCGGTCGAAATTTCACTATTTTC 58.065 37.500 17.99 2.12 0.00 2.29
19 20 5.952526 ACCGGTCGAAATTTCACTATTTT 57.047 34.783 17.99 0.00 0.00 1.82
20 21 6.128200 GGTTACCGGTCGAAATTTCACTATTT 60.128 38.462 12.40 0.99 0.00 1.40
21 22 5.352293 GGTTACCGGTCGAAATTTCACTATT 59.648 40.000 12.40 0.52 0.00 1.73
22 23 4.872124 GGTTACCGGTCGAAATTTCACTAT 59.128 41.667 12.40 7.65 0.00 2.12
23 24 4.244862 GGTTACCGGTCGAAATTTCACTA 58.755 43.478 12.40 0.21 0.00 2.74
24 25 3.069289 GGTTACCGGTCGAAATTTCACT 58.931 45.455 12.40 3.52 0.00 3.41
25 26 2.807392 TGGTTACCGGTCGAAATTTCAC 59.193 45.455 12.40 13.72 0.00 3.18
26 27 3.123157 TGGTTACCGGTCGAAATTTCA 57.877 42.857 12.40 2.95 0.00 2.69
27 28 4.486574 TTTGGTTACCGGTCGAAATTTC 57.513 40.909 12.40 8.20 0.00 2.17
28 29 4.097589 TGTTTTGGTTACCGGTCGAAATTT 59.902 37.500 12.40 0.00 0.00 1.82
29 30 3.631227 TGTTTTGGTTACCGGTCGAAATT 59.369 39.130 12.40 0.00 0.00 1.82
30 31 3.212685 TGTTTTGGTTACCGGTCGAAAT 58.787 40.909 12.40 0.00 0.00 2.17
31 32 2.613133 CTGTTTTGGTTACCGGTCGAAA 59.387 45.455 12.40 6.74 0.00 3.46
32 33 2.211806 CTGTTTTGGTTACCGGTCGAA 58.788 47.619 12.40 0.00 0.00 3.71
33 34 1.138661 ACTGTTTTGGTTACCGGTCGA 59.861 47.619 12.40 0.00 0.00 4.20
34 35 1.262151 CACTGTTTTGGTTACCGGTCG 59.738 52.381 12.40 0.00 0.00 4.79
35 36 1.605232 CCACTGTTTTGGTTACCGGTC 59.395 52.381 12.40 0.00 0.00 4.79
36 37 1.212441 TCCACTGTTTTGGTTACCGGT 59.788 47.619 13.98 13.98 37.93 5.28
37 38 1.970092 TCCACTGTTTTGGTTACCGG 58.030 50.000 0.00 0.00 37.93 5.28
38 39 2.227865 CCATCCACTGTTTTGGTTACCG 59.772 50.000 0.00 0.00 37.93 4.02
39 40 2.029380 GCCATCCACTGTTTTGGTTACC 60.029 50.000 0.00 0.00 37.93 2.85
40 41 2.625790 TGCCATCCACTGTTTTGGTTAC 59.374 45.455 0.00 0.00 37.93 2.50
41 42 2.950781 TGCCATCCACTGTTTTGGTTA 58.049 42.857 0.00 0.00 37.93 2.85
42 43 1.786937 TGCCATCCACTGTTTTGGTT 58.213 45.000 0.00 0.00 37.93 3.67
43 44 2.014010 ATGCCATCCACTGTTTTGGT 57.986 45.000 0.00 0.00 37.93 3.67
44 45 2.299582 TGAATGCCATCCACTGTTTTGG 59.700 45.455 0.00 0.00 38.10 3.28
45 46 3.663995 TGAATGCCATCCACTGTTTTG 57.336 42.857 0.00 0.00 0.00 2.44
46 47 4.040706 ACATTGAATGCCATCCACTGTTTT 59.959 37.500 4.84 0.00 0.00 2.43
47 48 3.579586 ACATTGAATGCCATCCACTGTTT 59.420 39.130 4.84 0.00 0.00 2.83
48 49 3.167485 ACATTGAATGCCATCCACTGTT 58.833 40.909 4.84 0.00 0.00 3.16
49 50 2.756760 GACATTGAATGCCATCCACTGT 59.243 45.455 4.84 0.00 0.00 3.55
50 51 3.021695 AGACATTGAATGCCATCCACTG 58.978 45.455 4.84 0.00 0.00 3.66
51 52 3.377253 AGACATTGAATGCCATCCACT 57.623 42.857 4.84 0.00 0.00 4.00
52 53 5.068636 AGATAGACATTGAATGCCATCCAC 58.931 41.667 4.84 0.00 0.00 4.02
53 54 5.072736 AGAGATAGACATTGAATGCCATCCA 59.927 40.000 4.84 0.00 0.00 3.41
54 55 5.411977 CAGAGATAGACATTGAATGCCATCC 59.588 44.000 4.84 1.32 0.00 3.51
81 82 0.179121 TATCGGCTTGTGATTCGCGT 60.179 50.000 5.77 0.00 0.00 6.01
170 171 4.645535 TCTTGTGCATGATATTCTAGCCC 58.354 43.478 0.00 0.00 0.00 5.19
172 173 5.334724 GCCTTCTTGTGCATGATATTCTAGC 60.335 44.000 0.00 0.00 0.00 3.42
173 174 5.761726 TGCCTTCTTGTGCATGATATTCTAG 59.238 40.000 0.00 0.00 31.31 2.43
174 175 5.683681 TGCCTTCTTGTGCATGATATTCTA 58.316 37.500 0.00 0.00 31.31 2.10
175 176 4.529897 TGCCTTCTTGTGCATGATATTCT 58.470 39.130 0.00 0.00 31.31 2.40
177 178 3.635373 CCTGCCTTCTTGTGCATGATATT 59.365 43.478 0.00 0.00 36.79 1.28
178 179 3.220110 CCTGCCTTCTTGTGCATGATAT 58.780 45.455 0.00 0.00 36.79 1.63
179 180 2.646930 CCTGCCTTCTTGTGCATGATA 58.353 47.619 0.00 0.00 36.79 2.15
180 181 1.471119 CCTGCCTTCTTGTGCATGAT 58.529 50.000 0.00 0.00 36.79 2.45
181 182 1.246056 GCCTGCCTTCTTGTGCATGA 61.246 55.000 0.00 0.00 36.79 3.07
182 183 1.214589 GCCTGCCTTCTTGTGCATG 59.785 57.895 0.00 0.00 36.79 4.06
183 184 0.613853 ATGCCTGCCTTCTTGTGCAT 60.614 50.000 0.00 0.00 36.79 3.96
244 245 5.691896 AGAAAAGTAAGCACCACTACCTTT 58.308 37.500 0.00 0.00 32.60 3.11
247 248 4.820173 ACAAGAAAAGTAAGCACCACTACC 59.180 41.667 0.00 0.00 0.00 3.18
252 253 5.220777 CGAAGAACAAGAAAAGTAAGCACCA 60.221 40.000 0.00 0.00 0.00 4.17
310 311 1.273048 CTGGCTTGGTGCTGCAAATTA 59.727 47.619 2.77 0.00 42.39 1.40
395 396 3.198409 TGCGACAATGCTATGAGGATT 57.802 42.857 0.00 0.00 36.67 3.01
448 449 6.197788 GCAAATTTACGGCACTATATTTGC 57.802 37.500 17.16 17.16 45.66 3.68
454 455 8.351495 CATAATTTGCAAATTTACGGCACTAT 57.649 30.769 35.18 19.82 39.24 2.12
517 518 4.806247 CGTTTTGGACATTACTTTGGCAAA 59.194 37.500 12.79 12.79 0.00 3.68
520 521 2.729360 GCGTTTTGGACATTACTTTGGC 59.271 45.455 0.00 0.00 0.00 4.52
556 558 7.584987 CCAAACGAACTAAATCAGAAACTCAT 58.415 34.615 0.00 0.00 0.00 2.90
611 616 5.981315 ACTTGTGCAAATTGATGAGAACAAG 59.019 36.000 9.88 9.88 37.46 3.16
708 713 5.468072 CAGCTGAACTTGTAAGTCAGTCATT 59.532 40.000 8.42 3.24 38.57 2.57
757 762 0.108424 TGGCCACATTAAATTGCGCC 60.108 50.000 0.00 10.05 36.41 6.53
759 764 2.203401 CCATGGCCACATTAAATTGCG 58.797 47.619 8.16 0.00 34.35 4.85
761 766 3.263489 TGCCATGGCCACATTAAATTG 57.737 42.857 33.44 0.00 41.09 2.32
802 807 1.003696 TGTGGTGGGTTTGATGCGATA 59.996 47.619 0.00 0.00 0.00 2.92
843 852 7.948384 GCATATTAATGGTTGCATAGTTGCAGT 60.948 37.037 12.35 0.00 45.20 4.40
844 853 6.364165 GCATATTAATGGTTGCATAGTTGCAG 59.636 38.462 12.35 0.00 45.20 4.41
852 861 6.720112 AAGTCTGCATATTAATGGTTGCAT 57.280 33.333 17.47 6.07 43.51 3.96
854 863 7.168135 GCTTTAAGTCTGCATATTAATGGTTGC 59.832 37.037 11.00 11.00 33.38 4.17
864 873 3.889815 TGCCAGCTTTAAGTCTGCATAT 58.110 40.909 9.70 0.00 0.00 1.78
867 876 1.814394 CATGCCAGCTTTAAGTCTGCA 59.186 47.619 9.70 8.30 0.00 4.41
873 882 4.978083 ATCAAGTCATGCCAGCTTTAAG 57.022 40.909 0.00 0.00 0.00 1.85
875 884 6.832520 TTTTATCAAGTCATGCCAGCTTTA 57.167 33.333 0.00 0.00 0.00 1.85
989 1000 4.280174 GCAAGATGCCCATGATCTACAAAT 59.720 41.667 0.00 0.00 37.42 2.32
991 1002 3.216800 GCAAGATGCCCATGATCTACAA 58.783 45.455 0.00 0.00 37.42 2.41
1318 3275 2.895404 AGGTGCTGATGAAATTTGCAGT 59.105 40.909 0.00 0.00 35.99 4.40
1356 3325 6.605594 ACACTTTAACACCAGATTTCAAAGGA 59.394 34.615 0.00 0.00 0.00 3.36
1374 3343 5.128992 TCAGCGACAAGTCATACACTTTA 57.871 39.130 0.72 0.00 43.38 1.85
1431 3400 5.350365 GTCGCAACCTATGATGTTTAGAACA 59.650 40.000 0.00 0.00 46.94 3.18
1519 3488 4.194678 TCTCCGTAATTCCTAGGTCCAT 57.805 45.455 9.08 0.00 0.00 3.41
1541 3510 0.320421 GCACTTCTTCGTAGCCACCA 60.320 55.000 0.00 0.00 0.00 4.17
1542 3511 0.320421 TGCACTTCTTCGTAGCCACC 60.320 55.000 0.00 0.00 0.00 4.61
1550 3519 0.179215 GACGCCATTGCACTTCTTCG 60.179 55.000 0.00 0.00 37.32 3.79
1727 3696 4.078688 TGGGTTGATCCACCATATTCCAAT 60.079 41.667 17.24 0.00 38.79 3.16
1836 3805 2.687370 CACTCATCACGTGTCAATGGA 58.313 47.619 16.51 4.67 0.00 3.41
1857 3826 2.679336 TGATGTCATGCCGAAGTCAATG 59.321 45.455 0.00 0.00 0.00 2.82
1858 3827 2.989909 TGATGTCATGCCGAAGTCAAT 58.010 42.857 0.00 0.00 0.00 2.57
2158 4136 4.067896 TGAGCAGTTGAGGTGAAAATCTC 58.932 43.478 0.00 0.00 0.00 2.75
2377 4388 6.038271 ACAAGCATATCCGGTTTTATTCTGTC 59.962 38.462 0.00 0.00 0.00 3.51
2388 4399 1.555075 ACTCACACAAGCATATCCGGT 59.445 47.619 0.00 0.00 0.00 5.28
2390 4401 3.119291 GAGACTCACACAAGCATATCCG 58.881 50.000 0.00 0.00 0.00 4.18
2568 4831 6.418585 AGTATTTTCGCTGTAAACCTTAGC 57.581 37.500 0.00 0.00 0.00 3.09
2630 4956 4.651778 AGCAGTACATCAGCCAAGTAAAA 58.348 39.130 0.00 0.00 0.00 1.52
2635 4962 2.703416 TGAAGCAGTACATCAGCCAAG 58.297 47.619 0.00 0.00 0.00 3.61
2832 5175 6.910433 CGTTCTAGTACACTGCATTTTTGTTT 59.090 34.615 0.00 0.00 0.00 2.83
3102 5454 5.618056 TCTCATTTGCAGTTTCATCAGAC 57.382 39.130 0.00 0.00 0.00 3.51
3174 5526 4.645956 GTCCGATAATACGTGTAGGATCG 58.354 47.826 13.62 13.62 35.30 3.69
3189 5541 4.781616 TGGCCCCCACGTCCGATA 62.782 66.667 0.00 0.00 0.00 2.92
3263 5616 4.914983 TCTCAGATTGCTCAATGACCTTT 58.085 39.130 0.00 0.00 0.00 3.11
3290 5643 4.943705 ACTGCGACCTCATTAATGAATTGT 59.056 37.500 18.47 15.01 36.18 2.71
3434 5787 3.057315 AGGAAAAACCATCACTTGCATCG 60.057 43.478 0.00 0.00 42.04 3.84
3531 5884 4.207224 CACGTCACGATGGAAGATTGATAC 59.793 45.833 2.91 0.00 0.00 2.24
3569 5922 4.651778 CTGTGTAGTTCCCATCCAAAAGA 58.348 43.478 0.00 0.00 0.00 2.52
3786 6139 4.202357 ACTTTAGACTGTGCCTGATTCACA 60.202 41.667 0.00 0.00 41.62 3.58
4036 9714 1.896220 TGGTTGCATCTGTTCTCCAC 58.104 50.000 0.00 0.00 0.00 4.02
4094 9772 0.760567 TATCTCCTGGCTGTGCGGAT 60.761 55.000 0.00 0.00 0.00 4.18
4155 9833 0.106167 ATCTACCGTGGCAGGCTAGA 60.106 55.000 13.00 13.00 32.58 2.43
4163 9841 0.969894 ATAGCCTCATCTACCGTGGC 59.030 55.000 0.00 0.00 43.52 5.01
4227 9905 6.387041 ACAATCATGATGCCTGAAATACAG 57.613 37.500 9.46 0.00 45.36 2.74
4228 9906 7.720515 TGATACAATCATGATGCCTGAAATACA 59.279 33.333 9.46 1.68 33.59 2.29
4229 9907 8.102800 TGATACAATCATGATGCCTGAAATAC 57.897 34.615 9.46 0.00 33.59 1.89
4256 9985 4.202050 GCAAGCATAATTCCAACCGAGAAT 60.202 41.667 0.00 0.00 35.46 2.40
4316 10049 5.065914 TGCATATGCTAGAAATTCACTCCC 58.934 41.667 27.13 0.00 42.66 4.30
4327 10060 6.056884 TCATCAACACAATGCATATGCTAGA 58.943 36.000 27.13 8.96 42.66 2.43
4409 10143 2.037772 ACGGTGGCAATGGCAAAATAAA 59.962 40.909 12.09 0.00 43.71 1.40
4534 10271 8.150945 GGATATAGTGCATTCTCCTTCTGTTTA 58.849 37.037 0.00 0.00 0.00 2.01
4562 10301 2.525368 GGCCCCAACAAATGTTAGAGT 58.475 47.619 0.00 0.00 36.32 3.24
4591 10338 3.084536 TGACATTTAAGGATGGCAGCA 57.915 42.857 4.64 0.00 40.06 4.41
4598 10345 5.416952 CCTTTGCTGTCTGACATTTAAGGAT 59.583 40.000 25.29 0.00 33.82 3.24
4604 10351 1.615392 GGCCTTTGCTGTCTGACATTT 59.385 47.619 11.45 0.00 37.74 2.32
4669 10436 2.486982 CCAGTGCCTGAGATTGTTTCAG 59.513 50.000 4.00 0.00 41.34 3.02
4670 10437 2.507484 CCAGTGCCTGAGATTGTTTCA 58.493 47.619 4.00 0.00 32.44 2.69
4690 10457 0.321996 AAGAACTGGAGAGAACCGGC 59.678 55.000 0.00 0.00 39.72 6.13
4691 10458 1.618837 TCAAGAACTGGAGAGAACCGG 59.381 52.381 0.00 0.00 41.66 5.28
4692 10459 2.558795 TCTCAAGAACTGGAGAGAACCG 59.441 50.000 4.95 0.00 35.34 4.44
4730 10497 3.498397 AGTGAGCACTTGTACATTTTCCG 59.502 43.478 0.00 0.00 38.83 4.30
4751 10518 8.808529 AGAATCGACTAAAATGATAACACGAAG 58.191 33.333 0.00 0.00 0.00 3.79
4755 10522 8.058915 GCAGAGAATCGACTAAAATGATAACAC 58.941 37.037 0.00 0.00 42.67 3.32
4780 10549 5.176590 CGCTGGAGATAAAGTAGAGAAATGC 59.823 44.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.