AutoCloner

Multiple sequence alignment - TraesCS3A01G523100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G523100	chr3A	100.000	2729	0	0	1	2729	738707394	738704666	0.000000e+00	5040
1	TraesCS3A01G523100	chr3A	93.057	1786	113	7	946	2723	640464957	640466739	0.000000e+00	2601
2	TraesCS3A01G523100	chr3A	86.354	960	63	22	24	948	738676667	738675741	0.000000e+00	985
3	TraesCS3A01G523100	chr3A	85.676	754	52	21	24	742	738501996	738501264	0.000000e+00	743
4	TraesCS3A01G523100	chr3A	80.941	829	99	30	25	817	738918083	738917278	3.890000e-168	601
5	TraesCS3A01G523100	chr2B	94.319	1778	100	1	946	2723	726903962	726905738	0.000000e+00	2723
6	TraesCS3A01G523100	chr7A	94.154	1779	103	1	946	2723	35095953	35097731	0.000000e+00	2708
7	TraesCS3A01G523100	chr7A	93.049	1784	122	2	946	2729	34938210	34936429	0.000000e+00	2606
8	TraesCS3A01G523100	chr1A	94.065	1786	103	3	946	2729	426093123	426094907	0.000000e+00	2708
9	TraesCS3A01G523100	chr6A	94.101	1780	101	3	946	2723	614769725	614771502	0.000000e+00	2702
10	TraesCS3A01G523100	chr6A	92.945	1786	113	9	946	2723	576936142	576937922	0.000000e+00	2588
11	TraesCS3A01G523100	chr5A	93.673	1786	109	3	946	2729	7792676	7790893	0.000000e+00	2669
12	TraesCS3A01G523100	chr4B	93.150	1781	117	4	946	2723	329026129	329027907	0.000000e+00	2608
13	TraesCS3A01G523100	chr3B	89.346	657	37	10	25	652	816039049	816038397	0.000000e+00	795
14	TraesCS3A01G523100	chr3D	78.917	351	36	13	623	948	605636885	605637222	1.280000e-48	204

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G523100	chr3A	738704666	738707394	2728	True	5040	5040	100.000	1	2729	1	chr3A.!!$R3	2728
1	TraesCS3A01G523100	chr3A	640464957	640466739	1782	False	2601	2601	93.057	946	2723	1	chr3A.!!$F1	1777
2	TraesCS3A01G523100	chr3A	738675741	738676667	926	True	985	985	86.354	24	948	1	chr3A.!!$R2	924
3	TraesCS3A01G523100	chr3A	738501264	738501996	732	True	743	743	85.676	24	742	1	chr3A.!!$R1	718
4	TraesCS3A01G523100	chr3A	738917278	738918083	805	True	601	601	80.941	25	817	1	chr3A.!!$R4	792
5	TraesCS3A01G523100	chr2B	726903962	726905738	1776	False	2723	2723	94.319	946	2723	1	chr2B.!!$F1	1777
6	TraesCS3A01G523100	chr7A	35095953	35097731	1778	False	2708	2708	94.154	946	2723	1	chr7A.!!$F1	1777
7	TraesCS3A01G523100	chr7A	34936429	34938210	1781	True	2606	2606	93.049	946	2729	1	chr7A.!!$R1	1783
8	TraesCS3A01G523100	chr1A	426093123	426094907	1784	False	2708	2708	94.065	946	2729	1	chr1A.!!$F1	1783
9	TraesCS3A01G523100	chr6A	614769725	614771502	1777	False	2702	2702	94.101	946	2723	1	chr6A.!!$F2	1777
10	TraesCS3A01G523100	chr6A	576936142	576937922	1780	False	2588	2588	92.945	946	2723	1	chr6A.!!$F1	1777
11	TraesCS3A01G523100	chr5A	7790893	7792676	1783	True	2669	2669	93.673	946	2729	1	chr5A.!!$R1	1783
12	TraesCS3A01G523100	chr4B	329026129	329027907	1778	False	2608	2608	93.150	946	2723	1	chr4B.!!$F1	1777
13	TraesCS3A01G523100	chr3B	816038397	816039049	652	True	795	795	89.346	25	652	1	chr3B.!!$R1	627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
907	968	0.251608	TTTGCTGAGGTTAAGGGCCC	60.252	55.0	16.46	16.46	0.0	5.8	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2126	2194	0.24746	CTGGTCAGCCACTCGATGAA	59.753	55.0	0.0	0.0	40.46	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	4.519906	TCTTTCCCTCTTTTGTGAACCT	57.480	40.909	0.00	0.00	0.00	3.50
22	23	4.207165	TCTTTCCCTCTTTTGTGAACCTG	58.793	43.478	0.00	0.00	0.00	4.00
49	50	5.556006	TCAGGCATCATGATTGTATCAGA	57.444	39.130	5.16	0.00	43.53	3.27
109	118	8.047310	ACACTGGTTTTAATTACCCAGAGATAG	58.953	37.037	22.68	13.18	45.97	2.08
202	212	3.057033	AGCAATGATTTTGAGCGCTCTTT	60.057	39.130	35.27	18.48	0.00	2.52
213	223	3.005261	TGAGCGCTCTTTTTATTTTGCCA	59.995	39.130	35.27	10.21	0.00	4.92
238	251	0.536233	ACCGTTGGTACATTGCTGCA	60.536	50.000	0.00	0.00	39.30	4.41
265	278	9.528018	TTTTCTTGGTGCTTCTTTTAATACAAG	57.472	29.630	0.00	0.00	35.41	3.16
355	370	6.100279	ACAGAAGGAGAATGCACTATATCCAA	59.900	38.462	11.04	0.00	30.64	3.53
384	407	2.017668	TTGTTGGGGCCCATCACACT	62.018	55.000	31.31	0.00	33.58	3.55
391	414	2.034532	CCCATCACACTGCTGCCA	59.965	61.111	0.00	0.00	0.00	4.92
397	440	0.983467	TCACACTGCTGCCATCCTTA	59.017	50.000	0.00	0.00	0.00	2.69
424	467	1.353694	AGACAGCAAAGGCCTCTGAAT	59.646	47.619	23.11	10.33	42.56	2.57
462	505	3.133691	TGTATGCTGAAATCGAGGATGC	58.866	45.455	0.00	0.00	0.00	3.91
463	506	2.634815	ATGCTGAAATCGAGGATGCT	57.365	45.000	0.00	0.00	0.00	3.79
523	566	0.698818	AGATGAACCCACTTGTCCCC	59.301	55.000	0.00	0.00	0.00	4.81
536	579	2.953284	TGTCCCCGGAAAATGTACAA	57.047	45.000	0.73	0.00	0.00	2.41
544	587	3.364964	CCGGAAAATGTACAAGTGCTCAC	60.365	47.826	0.00	0.00	0.00	3.51
573	618	8.262588	CGTGTTATCATTTTAGTCGATTCTCTG	58.737	37.037	0.00	0.00	0.00	3.35
596	641	6.051717	TGCATTTCTCTACTTTATCTCCAGC	58.948	40.000	0.00	0.00	0.00	4.85
604	649	0.830648	TTTATCTCCAGCGGTGAGGG	59.169	55.000	17.83	6.40	0.00	4.30
619	664	4.556699	CGGTGAGGGTTTTGACTTTGATTC	60.557	45.833	0.00	0.00	0.00	2.52
621	666	3.895041	TGAGGGTTTTGACTTTGATTCCC	59.105	43.478	0.00	0.00	0.00	3.97
624	669	3.646162	GGGTTTTGACTTTGATTCCCCTT	59.354	43.478	0.00	0.00	0.00	3.95
724	784	0.976641	TGGGACTGAAGATCGCAAGT	59.023	50.000	0.00	0.00	36.22	3.16
748	808	1.996292	TGTCGCTGTTGATGAGTAGC	58.004	50.000	0.00	0.00	0.00	3.58
795	855	2.906354	ACGGTTATGCATTCTCCTGAC	58.094	47.619	3.54	0.00	0.00	3.51
832	893	2.051941	CCTGTGCAGGTTGGCATTT	58.948	52.632	9.96	0.00	46.92	2.32
833	894	0.393820	CCTGTGCAGGTTGGCATTTT	59.606	50.000	9.96	0.00	46.92	1.82
834	895	1.202675	CCTGTGCAGGTTGGCATTTTT	60.203	47.619	9.96	0.00	46.92	1.94
835	896	2.137523	CTGTGCAGGTTGGCATTTTTC	58.862	47.619	0.00	0.00	46.92	2.29
836	897	1.483827	TGTGCAGGTTGGCATTTTTCA	59.516	42.857	0.00	0.00	46.92	2.69
837	898	2.104451	TGTGCAGGTTGGCATTTTTCAT	59.896	40.909	0.00	0.00	46.92	2.57
838	899	2.481185	GTGCAGGTTGGCATTTTTCATG	59.519	45.455	0.00	0.00	46.92	3.07
839	900	1.465777	GCAGGTTGGCATTTTTCATGC	59.534	47.619	0.00	0.00	43.85	4.06
840	901	1.727880	CAGGTTGGCATTTTTCATGCG	59.272	47.619	0.88	0.00	45.41	4.73
841	902	1.077915	GGTTGGCATTTTTCATGCGG	58.922	50.000	0.88	0.00	45.41	5.69
842	903	1.607767	GGTTGGCATTTTTCATGCGGT	60.608	47.619	0.88	0.00	45.41	5.68
843	904	2.353208	GGTTGGCATTTTTCATGCGGTA	60.353	45.455	0.88	0.00	45.41	4.02
857	918	0.731174	GCGGTAATTTTGTGTGCCCG	60.731	55.000	0.00	0.00	37.08	6.13
863	924	0.537143	ATTTTGTGTGCCCGAGCTCA	60.537	50.000	15.40	0.00	40.06	4.26
870	931	1.221414	GTGCCCGAGCTCATATGTTC	58.779	55.000	15.40	0.00	40.80	3.18
876	937	2.128035	CGAGCTCATATGTTCCCGTTC	58.872	52.381	15.40	0.00	0.00	3.95
907	968	0.251608	TTTGCTGAGGTTAAGGGCCC	60.252	55.000	16.46	16.46	0.00	5.80
923	984	2.036428	GCCCTTAGCCCGACCGTATT	62.036	60.000	0.00	0.00	34.35	1.89
924	985	0.466963	CCCTTAGCCCGACCGTATTT	59.533	55.000	0.00	0.00	0.00	1.40
926	987	2.102925	CCCTTAGCCCGACCGTATTTTA	59.897	50.000	0.00	0.00	0.00	1.52
935	996	4.339247	CCCGACCGTATTTTAGACTTCCTA	59.661	45.833	0.00	0.00	0.00	2.94
951	1012	1.559682	TCCTATCTGTGTTTGGCCCTC	59.440	52.381	0.00	0.00	0.00	4.30
973	1034	0.610509	AGAGCTGAGAGCCGAACAGA	60.611	55.000	0.00	0.00	43.77	3.41
981	1042	1.978473	AGCCGAACAGACTGCTCAT	59.022	52.632	1.25	0.00	0.00	2.90
1058	1119	2.223572	ACCGTTGCAAGCTTCTTGAAAG	60.224	45.455	0.00	0.00	0.00	2.62
1059	1120	2.388121	CGTTGCAAGCTTCTTGAAAGG	58.612	47.619	0.00	7.92	0.00	3.11
1137	1198	1.141234	CTCTGCGATGAGAGCTGCA	59.859	57.895	1.02	0.00	36.23	4.41
1141	1202	0.037046	TGCGATGAGAGCTGCAAAGA	60.037	50.000	1.02	0.00	33.80	2.52
1215	1276	5.001232	CGGAGGAAGTTTTGTGATCCTAAA	58.999	41.667	0.00	0.00	42.28	1.85
1246	1307	0.957395	GGACCGACTGTGGAGTACGA	60.957	60.000	0.00	0.00	30.16	3.43
1354	1415	1.202758	TCTGGTCGCAGTTCCACAATT	60.203	47.619	0.00	0.00	0.00	2.32
1418	1479	1.134367	CGAACTGAATAGGCTGTCCGA	59.866	52.381	0.00	0.00	37.47	4.55
1423	1484	2.166459	CTGAATAGGCTGTCCGAACTCA	59.834	50.000	0.00	0.00	37.47	3.41
1434	1495	1.691976	TCCGAACTCACCATGAAGTGT	59.308	47.619	0.00	0.00	38.91	3.55
1510	1571	1.597854	CAGCAGTTCCTTGGTGCGA	60.598	57.895	0.00	0.00	42.26	5.10
1563	1624	1.964448	CATAGAGGGTGCGCGGATA	59.036	57.895	8.83	0.00	0.00	2.59
1671	1732	3.619038	CCGAGCACTATTTTCAGGAAGTC	59.381	47.826	0.00	0.00	0.00	3.01
1692	1753	1.003116	CTGCAAGGCGCTCATGTAATC	60.003	52.381	7.64	0.00	43.06	1.75
1701	1762	2.193447	GCTCATGTAATCGAGACGCAA	58.807	47.619	0.00	0.00	0.00	4.85
1746	1808	6.307558	TCGAATAGCGTACGTGATTGTAAAAA	59.692	34.615	17.90	0.00	41.80	1.94
1874	1942	0.262580	AGCCCCCATGCACATAATGT	59.737	50.000	0.00	0.00	0.00	2.71
2007	2075	4.410228	TCACTTAGCCATAGGAGCTTGATT	59.590	41.667	0.00	0.00	41.83	2.57
2321	2389	6.906157	ACATTTGACCAAAGACATGATTCT	57.094	33.333	0.00	0.00	33.32	2.40
2347	2415	4.539870	CTGATGCATATAAGGCCAAAACG	58.460	43.478	5.01	0.00	0.00	3.60
2393	2461	3.520290	ATTCGGTCTTTATGAGTGCGA	57.480	42.857	0.00	0.00	0.00	5.10
2430	2498	4.717279	TTGTTAAAAGCCCCTAGTGTCT	57.283	40.909	0.00	0.00	0.00	3.41
2464	2534	0.677731	ATTCTGACGTGGCCACATGG	60.678	55.000	34.16	20.92	37.94	3.66
2574	2647	8.386264	AGGTCTTAATCTGAAAAGAATCCTTGA	58.614	33.333	7.22	0.00	33.70	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.207165	CAGGTTCACAAAAGAGGGAAAGA	58.793	43.478	0.00	0.00	0.00	2.52
1	2	3.954258	ACAGGTTCACAAAAGAGGGAAAG	59.046	43.478	0.00	0.00	0.00	2.62
2	3	3.976015	ACAGGTTCACAAAAGAGGGAAA	58.024	40.909	0.00	0.00	0.00	3.13
3	4	3.662759	ACAGGTTCACAAAAGAGGGAA	57.337	42.857	0.00	0.00	0.00	3.97
4	5	4.993705	ATACAGGTTCACAAAAGAGGGA	57.006	40.909	0.00	0.00	0.00	4.20
5	6	5.534654	TGAAATACAGGTTCACAAAAGAGGG	59.465	40.000	0.00	0.00	30.08	4.30
6	7	6.633500	TGAAATACAGGTTCACAAAAGAGG	57.367	37.500	0.00	0.00	30.08	3.69
20	21	6.387041	ACAATCATGATGCCTGAAATACAG	57.613	37.500	9.46	0.00	45.36	2.74
21	22	7.720515	TGATACAATCATGATGCCTGAAATACA	59.279	33.333	9.46	1.68	33.59	2.29
22	23	8.102800	TGATACAATCATGATGCCTGAAATAC	57.897	34.615	9.46	0.00	33.59	1.89
49	50	4.202050	GCAAGCATAATTCCAACCGAGAAT	60.202	41.667	0.00	0.00	35.46	2.40
109	118	5.065914	TGCATATGCTAGAAATTCACTCCC	58.934	41.667	27.13	0.00	42.66	4.30
120	129	6.056884	TCATCAACACAATGCATATGCTAGA	58.943	36.000	27.13	8.96	42.66	2.43
202	212	2.037772	ACGGTGGCAATGGCAAAATAAA	59.962	40.909	12.09	0.00	43.71	1.40
327	340	8.150945	GGATATAGTGCATTCTCCTTCTGTTTA	58.849	37.037	0.00	0.00	0.00	2.01
355	370	2.525368	GGCCCCAACAAATGTTAGAGT	58.475	47.619	0.00	0.00	36.32	3.24
384	407	3.084536	TGACATTTAAGGATGGCAGCA	57.915	42.857	4.64	0.00	40.06	4.41
391	414	5.416952	CCTTTGCTGTCTGACATTTAAGGAT	59.583	40.000	25.29	0.00	33.82	3.24
397	440	1.615392	GGCCTTTGCTGTCTGACATTT	59.385	47.619	11.45	0.00	37.74	2.32
462	505	2.486982	CCAGTGCCTGAGATTGTTTCAG	59.513	50.000	4.00	0.00	41.34	3.02
463	506	2.507484	CCAGTGCCTGAGATTGTTTCA	58.493	47.619	4.00	0.00	32.44	2.69
483	526	0.321996	AAGAACTGGAGAGAACCGGC	59.678	55.000	0.00	0.00	39.72	6.13
484	527	1.618837	TCAAGAACTGGAGAGAACCGG	59.381	52.381	0.00	0.00	41.66	5.28
485	528	2.558795	TCTCAAGAACTGGAGAGAACCG	59.441	50.000	4.95	0.00	35.34	4.44
523	566	3.498397	AGTGAGCACTTGTACATTTTCCG	59.502	43.478	0.00	0.00	38.83	4.30
544	587	8.808529	AGAATCGACTAAAATGATAACACGAAG	58.191	33.333	0.00	0.00	0.00	3.79
548	591	8.058915	GCAGAGAATCGACTAAAATGATAACAC	58.941	37.037	0.00	0.00	42.67	3.32
573	618	5.176590	CGCTGGAGATAAAGTAGAGAAATGC	59.823	44.000	0.00	0.00	0.00	3.56
596	641	2.294074	TCAAAGTCAAAACCCTCACCG	58.706	47.619	0.00	0.00	0.00	4.94
604	649	5.791336	AGAAGGGGAATCAAAGTCAAAAC	57.209	39.130	0.00	0.00	0.00	2.43
619	664	7.740805	ACTATTAGCTCAAGATAAAGAAGGGG	58.259	38.462	0.00	0.00	29.15	4.79
724	784	1.792367	CTCATCAACAGCGACAAACGA	59.208	47.619	0.00	0.00	45.77	3.85
748	808	1.105457	AATCGGTTGTGGATGCCATG	58.895	50.000	0.00	0.00	35.28	3.66
832	893	3.738282	GCACACAAAATTACCGCATGAAA	59.262	39.130	0.00	0.00	0.00	2.69
833	894	3.312828	GCACACAAAATTACCGCATGAA	58.687	40.909	0.00	0.00	0.00	2.57
834	895	2.352225	GGCACACAAAATTACCGCATGA	60.352	45.455	0.00	0.00	0.00	3.07
835	896	1.991965	GGCACACAAAATTACCGCATG	59.008	47.619	0.00	0.00	0.00	4.06
836	897	1.067213	GGGCACACAAAATTACCGCAT	60.067	47.619	0.00	0.00	0.00	4.73
837	898	0.315568	GGGCACACAAAATTACCGCA	59.684	50.000	0.00	0.00	0.00	5.69
838	899	0.731174	CGGGCACACAAAATTACCGC	60.731	55.000	0.00	0.00	33.01	5.68
839	900	0.875728	TCGGGCACACAAAATTACCG	59.124	50.000	0.00	0.00	41.06	4.02
840	901	1.402325	GCTCGGGCACACAAAATTACC	60.402	52.381	0.00	0.00	38.54	2.85
841	902	1.539827	AGCTCGGGCACACAAAATTAC	59.460	47.619	11.40	0.00	41.70	1.89
842	903	1.810151	GAGCTCGGGCACACAAAATTA	59.190	47.619	11.40	0.00	41.70	1.40
843	904	0.598065	GAGCTCGGGCACACAAAATT	59.402	50.000	11.40	0.00	41.70	1.82
857	918	2.158957	TGGAACGGGAACATATGAGCTC	60.159	50.000	10.38	6.82	0.00	4.09
863	924	7.889873	TTAAATTGATGGAACGGGAACATAT	57.110	32.000	0.00	0.00	0.00	1.78
870	931	5.291614	CAGCAAATTAAATTGATGGAACGGG	59.708	40.000	12.65	0.00	41.68	5.28
876	937	9.090692	CTTAACCTCAGCAAATTAAATTGATGG	57.909	33.333	18.64	8.55	44.59	3.51
907	968	4.047142	GTCTAAAATACGGTCGGGCTAAG	58.953	47.826	0.00	0.00	0.00	2.18
923	984	5.938125	GCCAAACACAGATAGGAAGTCTAAA	59.062	40.000	0.00	0.00	0.00	1.85
924	985	5.488341	GCCAAACACAGATAGGAAGTCTAA	58.512	41.667	0.00	0.00	0.00	2.10
926	987	3.307762	GGCCAAACACAGATAGGAAGTCT	60.308	47.826	0.00	0.00	0.00	3.24
935	996	0.400213	TTCGAGGGCCAAACACAGAT	59.600	50.000	6.18	0.00	0.00	2.90
951	1012	0.800300	GTTCGGCTCTCAGCTCTTCG	60.800	60.000	0.00	0.00	41.99	3.79
1137	1198	0.321122	CCTGACGCAGCTCCTTCTTT	60.321	55.000	1.84	0.00	0.00	2.52
1141	1202	4.400961	GGCCTGACGCAGCTCCTT	62.401	66.667	0.00	0.00	40.31	3.36
1182	1243	3.838244	AACTTCCTCCGCAGCATATAA	57.162	42.857	0.00	0.00	0.00	0.98
1246	1307	2.170607	CCAAATCCAGATAGGTGTCCGT	59.829	50.000	0.00	0.00	39.02	4.69
1354	1415	0.823769	ACTGACAGTGGACGCTCTGA	60.824	55.000	7.47	0.00	35.84	3.27
1411	1472	2.289072	ACTTCATGGTGAGTTCGGACAG	60.289	50.000	0.00	0.00	0.00	3.51
1418	1479	3.558931	TGACACACTTCATGGTGAGTT	57.441	42.857	8.84	0.00	40.11	3.01
1434	1495	0.035317	GCCACAGGTGACTCATGACA	59.965	55.000	0.00	0.00	40.21	3.58
1510	1571	3.641437	AATTGCATTAATACGCGGCAT	57.359	38.095	12.47	0.00	34.03	4.40
1563	1624	1.302033	CTTGACACGGGCAAGAGCT	60.302	57.895	14.28	0.00	44.16	4.09
1685	1746	2.797156	GAGCATTGCGTCTCGATTACAT	59.203	45.455	2.38	0.00	0.00	2.29
1701	1762	3.924144	GAAGATAGCATCCTTCGAGCAT	58.076	45.455	0.00	0.00	30.88	3.79
1874	1942	2.342279	CTTCTGCGAACACCCCGA	59.658	61.111	0.00	0.00	0.00	5.14
2126	2194	0.247460	CTGGTCAGCCACTCGATGAA	59.753	55.000	0.00	0.00	40.46	2.57
2321	2389	2.372837	TGGCCTTATATGCATCAGCTCA	59.627	45.455	0.19	0.00	42.74	4.26
2393	2461	0.751643	ACAAAGGGCGTTGTCTTGCT	60.752	50.000	0.00	0.00	37.10	3.91
2430	2498	3.123959	GTCAGAATTTTTGCGCGTACCTA	59.876	43.478	8.43	0.00	0.00	3.08
2464	2534	4.400961	AGGAGGCTGGCGTCTTGC	62.401	66.667	13.63	0.00	45.38	4.01
2548	2621	8.386264	TCAAGGATTCTTTTCAGATTAAGACCT	58.614	33.333	0.00	0.00	31.69	3.85
2574	2647	3.884774	TGCAGCAGGGACCCGTTT	61.885	61.111	4.40	0.00	0.00	3.60

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.