AutoCloner

Multiple sequence alignment - TraesCS3A01G522900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G522900	chr3A	100.000	2701	0	0	263	2963	738692314	738689614	0.000000e+00	4988.0
1	TraesCS3A01G522900	chr3A	82.926	2536	299	86	497	2963	738223677	738221207	0.000000e+00	2161.0
2	TraesCS3A01G522900	chr3A	86.803	1811	217	14	376	2169	738919789	738917984	0.000000e+00	2001.0
3	TraesCS3A01G522900	chr3A	90.621	1418	126	7	472	1883	738305544	738304128	0.000000e+00	1875.0
4	TraesCS3A01G522900	chr3A	89.506	1477	143	6	677	2147	738678056	738676586	0.000000e+00	1858.0
5	TraesCS3A01G522900	chr3A	89.438	1477	144	6	677	2147	738503385	738501915	0.000000e+00	1853.0
6	TraesCS3A01G522900	chr3A	88.239	1488	168	5	378	1864	738583017	738581536	0.000000e+00	1772.0
7	TraesCS3A01G522900	chr3A	88.172	1488	169	5	378	1864	738561354	738559873	0.000000e+00	1766.0
8	TraesCS3A01G522900	chr3A	87.508	1529	184	4	492	2017	738708899	738707375	0.000000e+00	1759.0
9	TraesCS3A01G522900	chr3A	87.589	838	85	8	1633	2459	738757829	738757000	0.000000e+00	953.0
10	TraesCS3A01G522900	chr3A	89.807	363	28	7	2148	2508	738244036	738243681	9.680000e-125	457.0
11	TraesCS3A01G522900	chr3A	88.828	367	28	7	2148	2508	738917954	738917595	3.510000e-119	438.0
12	TraesCS3A01G522900	chr3A	100.000	62	0	0	1	62	738692576	738692515	6.710000e-22	115.0
13	TraesCS3A01G522900	chr3A	98.387	62	1	0	1	62	738759128	738759067	3.120000e-20	110.0
14	TraesCS3A01G522900	chr3A	95.082	61	3	0	1	61	738865279	738865219	2.430000e-16	97.1
15	TraesCS3A01G522900	chr3A	93.443	61	4	0	1	61	738919969	738919909	1.130000e-14	91.6
16	TraesCS3A01G522900	chr3A	89.091	55	6	0	1	55	738855923	738855869	5.300000e-08	69.4
17	TraesCS3A01G522900	chr3D	88.107	2514	233	29	480	2960	605973352	605975832	0.000000e+00	2926.0
18	TraesCS3A01G522900	chr3D	88.382	1687	180	13	492	2170	605676373	605678051	0.000000e+00	2015.0
19	TraesCS3A01G522900	chr3D	90.654	214	16	4	2148	2359	605678080	605678291	6.250000e-72	281.0
20	TraesCS3A01G522900	chr3D	90.710	183	13	4	2149	2329	606003695	606003875	1.060000e-59	241.0
21	TraesCS3A01G522900	chr3D	74.022	358	56	23	2154	2508	605636473	605636796	8.680000e-21	111.0
22	TraesCS3A01G522900	chr3B	89.171	1459	145	9	431	1883	816172371	816170920	0.000000e+00	1807.0
23	TraesCS3A01G522900	chr3B	88.325	197	15	6	1977	2169	816097988	816097796	2.300000e-56	230.0
24	TraesCS3A01G522900	chr3B	87.302	189	24	0	1791	1979	816149927	816149739	1.790000e-52	217.0
25	TraesCS3A01G522900	chrUn	88.038	1488	171	5	378	1864	259683456	259681975	0.000000e+00	1755.0
26	TraesCS3A01G522900	chrUn	88.889	54	6	0	1	54	42527756	42527809	1.910000e-07	67.6
27	TraesCS3A01G522900	chr5B	91.071	56	5	0	2	57	621469809	621469754	3.170000e-10	76.8
28	TraesCS3A01G522900	chr5B	88.710	62	7	0	1	62	621478614	621478553	3.170000e-10	76.8
29	TraesCS3A01G522900	chr5A	91.071	56	5	0	2	57	624712506	624712451	3.170000e-10	76.8
30	TraesCS3A01G522900	chr5A	87.097	62	8	0	1	62	624724443	624724382	1.470000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G522900	chr3A	738689614	738692576	2962	True	2551.500000	4988	100.000000	1	2963	2	chr3A.!!$R11	2962
1	TraesCS3A01G522900	chr3A	738221207	738223677	2470	True	2161.000000	2161	82.926000	497	2963	1	chr3A.!!$R1	2466
2	TraesCS3A01G522900	chr3A	738304128	738305544	1416	True	1875.000000	1875	90.621000	472	1883	1	chr3A.!!$R3	1411
3	TraesCS3A01G522900	chr3A	738676586	738678056	1470	True	1858.000000	1858	89.506000	677	2147	1	chr3A.!!$R7	1470
4	TraesCS3A01G522900	chr3A	738501915	738503385	1470	True	1853.000000	1853	89.438000	677	2147	1	chr3A.!!$R4	1470
5	TraesCS3A01G522900	chr3A	738581536	738583017	1481	True	1772.000000	1772	88.239000	378	1864	1	chr3A.!!$R6	1486
6	TraesCS3A01G522900	chr3A	738559873	738561354	1481	True	1766.000000	1766	88.172000	378	1864	1	chr3A.!!$R5	1486
7	TraesCS3A01G522900	chr3A	738707375	738708899	1524	True	1759.000000	1759	87.508000	492	2017	1	chr3A.!!$R8	1525
8	TraesCS3A01G522900	chr3A	738917595	738919969	2374	True	843.533333	2001	89.691333	1	2508	3	chr3A.!!$R13	2507
9	TraesCS3A01G522900	chr3A	738757000	738759128	2128	True	531.500000	953	92.988000	1	2459	2	chr3A.!!$R12	2458
10	TraesCS3A01G522900	chr3D	605973352	605975832	2480	False	2926.000000	2926	88.107000	480	2960	1	chr3D.!!$F2	2480
11	TraesCS3A01G522900	chr3D	605676373	605678291	1918	False	1148.000000	2015	89.518000	492	2359	2	chr3D.!!$F4	1867
12	TraesCS3A01G522900	chr3B	816170920	816172371	1451	True	1807.000000	1807	89.171000	431	1883	1	chr3B.!!$R3	1452
13	TraesCS3A01G522900	chrUn	259681975	259683456	1481	True	1755.000000	1755	88.038000	378	1864	1	chrUn.!!$R1	1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
310	311	1.334384	TAACTGCCTATGCCGCTGGA	61.334	55.0	0.0	0.0	36.33	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2202	2325	0.319727	TGTACTAACGGTGGCAACGG	60.32	55.0	30.22	14.13	42.51	4.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
310	311	1.334384	TAACTGCCTATGCCGCTGGA	61.334	55.000	0.00	0.00	36.33	3.86
359	369	6.978674	TGTATAGAAGTTGCCAGCTACTAT	57.021	37.500	7.15	2.82	32.21	2.12
362	372	8.920174	TGTATAGAAGTTGCCAGCTACTATAAA	58.080	33.333	7.15	0.00	32.21	1.40
363	373	9.413048	GTATAGAAGTTGCCAGCTACTATAAAG	57.587	37.037	7.15	0.00	32.21	1.85
364	374	6.546428	AGAAGTTGCCAGCTACTATAAAGA	57.454	37.500	7.15	0.00	32.21	2.52
365	375	6.342111	AGAAGTTGCCAGCTACTATAAAGAC	58.658	40.000	7.15	0.00	32.21	3.01
367	377	3.728076	TGCCAGCTACTATAAAGACGG	57.272	47.619	0.00	0.00	0.00	4.79
368	378	3.028850	TGCCAGCTACTATAAAGACGGT	58.971	45.455	0.00	0.00	0.00	4.83
369	379	3.181479	TGCCAGCTACTATAAAGACGGTG	60.181	47.826	0.00	0.00	0.00	4.94
370	380	3.067742	GCCAGCTACTATAAAGACGGTGA	59.932	47.826	0.00	0.00	0.00	4.02
371	381	4.608951	CCAGCTACTATAAAGACGGTGAC	58.391	47.826	0.00	0.00	0.00	3.67
373	383	5.530171	CCAGCTACTATAAAGACGGTGACTA	59.470	44.000	0.00	0.00	0.00	2.59
374	384	6.428799	CAGCTACTATAAAGACGGTGACTAC	58.571	44.000	0.00	0.00	0.00	2.73
495	517	7.228308	TGTGTCATAGATTTTGTCAACACATCA	59.772	33.333	0.00	0.00	40.37	3.07
508	531	9.844790	TTGTCAACACATCATATCAAGATTTTC	57.155	29.630	0.00	0.00	30.55	2.29
570	593	5.037383	TGTAACGGGACATGCCATAATAA	57.963	39.130	8.20	0.00	38.95	1.40
603	626	5.351740	GCTTTAGTTGTACTGAATGTCCTCC	59.648	44.000	0.00	0.00	0.00	4.30
611	634	3.791320	ACTGAATGTCCTCCCAAGACTA	58.209	45.455	0.00	0.00	35.21	2.59
620	643	5.964477	TGTCCTCCCAAGACTAAGTATGATT	59.036	40.000	0.00	0.00	35.21	2.57
675	705	5.442391	ACCTCTGCTCTTAGGTAAGACTAG	58.558	45.833	0.00	0.00	44.40	2.57
714	746	7.165460	TGATAGACAAGATAGAACGGAAACA	57.835	36.000	0.00	0.00	0.00	2.83
729	761	8.793592	AGAACGGAAACATAAAAGAGCTTAATT	58.206	29.630	0.00	0.00	0.00	1.40
744	776	8.207350	AGAGCTTAATTCCTGCAGGTATAATA	57.793	34.615	31.58	15.11	36.34	0.98
821	853	7.043059	GCTTCTCACTCGTAGATGGAAAATAAG	60.043	40.741	0.00	0.00	33.89	1.73
822	854	6.273825	TCTCACTCGTAGATGGAAAATAAGC	58.726	40.000	0.00	0.00	33.89	3.09
966	998	4.494484	AGAAGGCAACAAACAACTTTGAC	58.506	39.130	0.00	0.00	39.43	3.18
1086	1118	3.055530	AGCAGTCCGAGATCAGTCAATTT	60.056	43.478	0.00	0.00	0.00	1.82
1236	1268	5.814705	AGCTCTTCATGCAGATACAAGTAAC	59.185	40.000	0.00	0.00	0.00	2.50
1431	1463	1.635844	TGGTTCCGATCGATCAAACG	58.364	50.000	24.40	11.38	0.00	3.60
1473	1505	5.425630	CAGGGTACATTTGGGTACTTAGAC	58.574	45.833	0.00	0.00	42.53	2.59
1503	1535	1.216064	TCCATACCAGGCAGCTGAAT	58.784	50.000	20.43	0.61	0.00	2.57
1625	1657	5.483937	TGTCAAGCTATTTTCTCCAGGAGTA	59.516	40.000	16.65	3.69	0.00	2.59
1649	1681	2.168728	GTGAGGGGAGAATCACTGGTAC	59.831	54.545	0.00	0.00	39.68	3.34
1654	1686	3.009143	GGGGAGAATCACTGGTACTGTTT	59.991	47.826	0.00	0.00	39.68	2.83
1740	1772	0.654683	GCTTAAGACTGCATGGCGAG	59.345	55.000	6.67	0.00	0.00	5.03
1788	1820	0.798771	CGGAACTGCAGACTCTACGC	60.799	60.000	23.35	3.00	0.00	4.42
1886	1918	2.988010	AGATCTGCTCGGCAATTGTA	57.012	45.000	7.40	0.00	38.41	2.41
1913	1945	1.541310	CCTGGAGGTAGCCAACGACA	61.541	60.000	0.00	0.00	37.52	4.35
2168	2289	5.600484	ACCCTAGAAGAGATGTAGTGGATTG	59.400	44.000	0.00	0.00	0.00	2.67
2180	2301	8.213679	AGATGTAGTGGATTGTATTAGCAATGT	58.786	33.333	0.00	0.00	38.98	2.71
2244	2367	1.790623	GCTGTGTTTTCTCGACGCTTA	59.209	47.619	0.00	0.00	0.00	3.09
2286	2413	1.069513	TCAAGTTTTTCCTCTCGGCGA	59.930	47.619	10.14	10.14	0.00	5.54
2372	2501	5.159273	TCTAAAATTTGTTTGGGCCCATC	57.841	39.130	29.23	22.07	0.00	3.51
2373	2502	3.872459	AAAATTTGTTTGGGCCCATCA	57.128	38.095	29.23	24.51	0.00	3.07
2374	2503	2.857186	AATTTGTTTGGGCCCATCAC	57.143	45.000	29.23	25.23	0.00	3.06
2375	2504	1.727062	ATTTGTTTGGGCCCATCACA	58.273	45.000	29.23	27.60	0.00	3.58
2377	2506	1.727062	TTGTTTGGGCCCATCACATT	58.273	45.000	29.35	0.00	0.00	2.71
2449	2584	3.679389	AGGCGTCTGAAGAATTGAATGT	58.321	40.909	0.00	0.00	0.00	2.71
2470	2606	8.659925	AATGTGTATTTTGTTTGCTGAAATCA	57.340	26.923	0.00	0.00	0.00	2.57
2531	2667	5.163385	CCATGAACCACAAGCCAAATGATAT	60.163	40.000	0.00	0.00	0.00	1.63
2532	2668	6.040729	CCATGAACCACAAGCCAAATGATATA	59.959	38.462	0.00	0.00	0.00	0.86
2533	2669	7.256048	CCATGAACCACAAGCCAAATGATATAT	60.256	37.037	0.00	0.00	0.00	0.86
2534	2670	7.041635	TGAACCACAAGCCAAATGATATATG	57.958	36.000	0.00	0.00	0.00	1.78
2535	2671	6.832900	TGAACCACAAGCCAAATGATATATGA	59.167	34.615	0.00	0.00	0.00	2.15
2536	2672	7.506599	TGAACCACAAGCCAAATGATATATGAT	59.493	33.333	0.00	0.00	0.00	2.45
2537	2673	8.938801	AACCACAAGCCAAATGATATATGATA	57.061	30.769	0.00	0.00	0.00	2.15
2538	2674	8.340618	ACCACAAGCCAAATGATATATGATAC	57.659	34.615	0.00	0.00	0.00	2.24
2539	2675	8.166061	ACCACAAGCCAAATGATATATGATACT	58.834	33.333	0.00	0.00	0.00	2.12
2560	2696	6.727824	ACTATGTGACTTGTTCATTGCTAC	57.272	37.500	0.00	0.00	36.32	3.58
2620	2756	0.396974	ACAACTGAAAGCCCTTGCCA	60.397	50.000	0.00	0.00	37.60	4.92
2693	2831	1.570813	TGTCAGTCTGCACAGAAACG	58.429	50.000	1.05	0.00	39.48	3.60
2697	2835	1.083401	GTCTGCACAGAAACGCACG	60.083	57.895	1.05	0.00	39.48	5.34
2756	2904	2.514592	CCGATTGTGGATGCCGCT	60.515	61.111	0.00	0.00	34.70	5.52
2758	2906	1.522355	CGATTGTGGATGCCGCTCT	60.522	57.895	0.00	0.00	34.70	4.09
2769	2925	2.202932	CCGCTCTCATCAACCCGG	60.203	66.667	0.00	0.00	0.00	5.73
2771	2927	2.268920	GCTCTCATCAACCCGGCA	59.731	61.111	0.00	0.00	0.00	5.69
2773	2929	1.817099	CTCTCATCAACCCGGCAGC	60.817	63.158	0.00	0.00	0.00	5.25
2775	2931	3.626996	CTCATCAACCCGGCAGCCA	62.627	63.158	13.30	0.00	0.00	4.75
2776	2932	2.440796	CATCAACCCGGCAGCCAT	60.441	61.111	13.30	0.00	0.00	4.40
2777	2933	2.124151	ATCAACCCGGCAGCCATC	60.124	61.111	13.30	0.00	0.00	3.51
2778	2934	2.683465	ATCAACCCGGCAGCCATCT	61.683	57.895	13.30	0.00	0.00	2.90
2779	2935	2.898920	ATCAACCCGGCAGCCATCTG	62.899	60.000	13.30	2.78	43.16	2.90
2780	2936	3.329889	AACCCGGCAGCCATCTGA	61.330	61.111	13.30	0.00	42.95	3.27
2781	2937	2.683465	AACCCGGCAGCCATCTGAT	61.683	57.895	13.30	0.00	42.95	2.90
2785	2941	1.278985	CCCGGCAGCCATCTGATAATA	59.721	52.381	13.30	0.00	42.95	0.98
2801	2957	5.977635	TGATAATATTCAGTCCCGCATAGG	58.022	41.667	0.00	0.00	40.63	2.57
2824	2980	4.123506	GGAAGATAAGCTAACTGACAGCC	58.876	47.826	1.25	0.00	39.99	4.85
2853	3012	2.887151	AACTGAACTCCTCCCCAATG	57.113	50.000	0.00	0.00	0.00	2.82
2866	3044	1.339631	CCCCAATGTTAGCAACCGAGA	60.340	52.381	0.00	0.00	0.00	4.04
2911	3090	1.532921	CGCTGGAGACTGATTCGAGAC	60.533	57.143	0.00	0.00	0.00	3.36
2912	3091	1.748493	GCTGGAGACTGATTCGAGACT	59.252	52.381	0.00	0.00	0.00	3.24
2956	3138	0.172803	ACGCACCTGTAGACGGATTC	59.827	55.000	0.00	0.00	0.00	2.52
2960	3142	3.490249	CGCACCTGTAGACGGATTCATTA	60.490	47.826	0.00	0.00	0.00	1.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
263	264	9.982651	GATAGATGGTATAGTACAAAGCTTTGA	57.017	33.333	38.78	22.52	40.55	2.69
264	265	9.988815	AGATAGATGGTATAGTACAAAGCTTTG	57.011	33.333	32.53	32.53	43.62	2.77
283	284	4.621747	GCGGCATAGGCAGTTAAGATAGAT	60.622	45.833	0.15	0.00	43.71	1.98
342	352	5.232414	CGTCTTTATAGTAGCTGGCAACTTC	59.768	44.000	0.00	0.00	37.61	3.01
359	369	4.952460	AGCAAAAGTAGTCACCGTCTTTA	58.048	39.130	0.00	0.00	31.24	1.85
362	372	3.573110	AGTAGCAAAAGTAGTCACCGTCT	59.427	43.478	0.00	0.00	0.00	4.18
363	373	3.910648	AGTAGCAAAAGTAGTCACCGTC	58.089	45.455	0.00	0.00	0.00	4.79
364	374	4.038883	AGAAGTAGCAAAAGTAGTCACCGT	59.961	41.667	0.00	0.00	0.00	4.83
365	375	4.557205	AGAAGTAGCAAAAGTAGTCACCG	58.443	43.478	0.00	0.00	0.00	4.94
367	377	8.488764	CAAACTAGAAGTAGCAAAAGTAGTCAC	58.511	37.037	0.00	0.00	0.00	3.67
368	378	8.202137	ACAAACTAGAAGTAGCAAAAGTAGTCA	58.798	33.333	0.00	0.00	0.00	3.41
369	379	8.590719	ACAAACTAGAAGTAGCAAAAGTAGTC	57.409	34.615	0.00	0.00	0.00	2.59
370	380	8.959705	AACAAACTAGAAGTAGCAAAAGTAGT	57.040	30.769	0.00	0.00	0.00	2.73
407	417	7.716799	ACAATATCAATTAAGTGAAGCCCAA	57.283	32.000	9.98	0.00	0.00	4.12
409	419	8.250332	TGAAACAATATCAATTAAGTGAAGCCC	58.750	33.333	9.98	0.00	0.00	5.19
441	456	6.974932	TCAGAAGATTGTACTTCATTCAGC	57.025	37.500	0.00	0.00	45.83	4.26
570	593	5.304614	TCAGTACAACTAAAGCTTCCTCTGT	59.695	40.000	0.00	4.49	0.00	3.41
620	643	8.946085	CCTCTTAGTACACTGCATTTTTAATGA	58.054	33.333	3.70	0.00	0.00	2.57
714	746	6.190587	ACCTGCAGGAATTAAGCTCTTTTAT	58.809	36.000	39.19	7.29	38.94	1.40
729	761	5.922960	ACCCAATTATTATACCTGCAGGA	57.077	39.130	39.19	22.26	38.94	3.86
744	776	4.224818	CCCAAACCACATGATAACCCAATT	59.775	41.667	0.00	0.00	0.00	2.32
765	797	1.562783	AGCTCAGAAGTAGGACACCC	58.437	55.000	0.00	0.00	0.00	4.61
821	853	1.262151	TCCGTAGTTGCTTTTGAACGC	59.738	47.619	0.00	0.00	0.00	4.84
822	854	3.246699	TCTTCCGTAGTTGCTTTTGAACG	59.753	43.478	0.00	0.00	0.00	3.95
966	998	0.597637	GTCCGATGATACGTGCAGGG	60.598	60.000	11.67	2.75	0.00	4.45
1214	1246	6.036470	TCGTTACTTGTATCTGCATGAAGAG	58.964	40.000	9.83	0.00	0.00	2.85
1236	1268	4.037446	TCACCCCAAGACAAAGAAAAATCG	59.963	41.667	0.00	0.00	0.00	3.34
1356	1388	6.591935	TGTGTAATTCCCATCCAAGAGTATC	58.408	40.000	0.00	0.00	0.00	2.24
1473	1505	3.496870	GCCTGGTATGGAAATACTCTGGG	60.497	52.174	0.00	0.00	0.00	4.45
1503	1535	1.174078	TGTACACGTCGCTCTTCCCA	61.174	55.000	0.00	0.00	0.00	4.37
1644	1676	1.847737	ACCTGGGAACAAACAGTACCA	59.152	47.619	0.00	0.00	42.06	3.25
1649	1681	1.609208	CAGGACCTGGGAACAAACAG	58.391	55.000	14.26	0.00	42.06	3.16
1717	1749	1.952367	GCCATGCAGTCTTAAGCACCT	60.952	52.381	0.00	0.00	44.49	4.00
1740	1772	2.558359	CTGTTTCATGGTGGGTCTTTCC	59.442	50.000	0.00	0.00	0.00	3.13
1886	1918	1.910722	CTACCTCCAGGCTGTGCAT	59.089	57.895	14.43	0.00	39.32	3.96
1896	1928	0.830444	AGTGTCGTTGGCTACCTCCA	60.830	55.000	0.00	0.00	0.00	3.86
1913	1945	3.039252	ACTCTGCCTCCAAGCTATAGT	57.961	47.619	0.84	0.00	0.00	2.12
2168	2289	5.708948	TGAGTGCCAAAACATTGCTAATAC	58.291	37.500	0.00	0.00	0.00	1.89
2202	2325	0.319727	TGTACTAACGGTGGCAACGG	60.320	55.000	30.22	14.13	42.51	4.44
2286	2413	8.573885	CATGTATCTGAATGCCTGTCATATTTT	58.426	33.333	0.00	0.00	34.33	1.82
2359	2488	1.265236	GAATGTGATGGGCCCAAACA	58.735	50.000	33.94	33.94	33.31	2.83
2363	2492	0.611618	GTGTGAATGTGATGGGCCCA	60.612	55.000	30.92	30.92	0.00	5.36
2372	2501	1.208358	CAGCAGCGGTGTGAATGTG	59.792	57.895	17.07	1.14	0.00	3.21
2373	2502	1.227943	ACAGCAGCGGTGTGAATGT	60.228	52.632	17.07	12.79	42.86	2.71
2374	2503	1.499056	GACAGCAGCGGTGTGAATG	59.501	57.895	17.07	12.19	44.55	2.67
2375	2504	1.672356	GGACAGCAGCGGTGTGAAT	60.672	57.895	17.07	0.00	44.55	2.57
2377	2506	2.715532	GAAGGACAGCAGCGGTGTGA	62.716	60.000	17.07	0.00	44.55	3.58
2449	2584	7.495901	TCCTTGATTTCAGCAAACAAAATACA	58.504	30.769	0.00	0.00	0.00	2.29
2470	2606	4.256920	CCTGAGATTGTTTCGACATCCTT	58.743	43.478	0.00	0.00	0.00	3.36
2531	2667	9.045223	GCAATGAACAAGTCACATAGTATCATA	57.955	33.333	0.00	0.00	39.72	2.15
2532	2668	7.772292	AGCAATGAACAAGTCACATAGTATCAT	59.228	33.333	0.00	0.00	39.72	2.45
2533	2669	7.105588	AGCAATGAACAAGTCACATAGTATCA	58.894	34.615	0.00	0.00	39.72	2.15
2534	2670	7.545362	AGCAATGAACAAGTCACATAGTATC	57.455	36.000	0.00	0.00	39.72	2.24
2535	2671	7.495934	GGTAGCAATGAACAAGTCACATAGTAT	59.504	37.037	0.00	0.00	39.72	2.12
2536	2672	6.816640	GGTAGCAATGAACAAGTCACATAGTA	59.183	38.462	0.00	0.00	39.72	1.82
2537	2673	5.643777	GGTAGCAATGAACAAGTCACATAGT	59.356	40.000	0.00	0.00	39.72	2.12
2538	2674	5.643348	TGGTAGCAATGAACAAGTCACATAG	59.357	40.000	0.00	0.00	39.72	2.23
2539	2675	5.555966	TGGTAGCAATGAACAAGTCACATA	58.444	37.500	0.00	0.00	39.72	2.29
2620	2756	5.862845	TCAAATGTTACCACCAATTTGCAT	58.137	33.333	0.00	0.00	0.00	3.96
2697	2835	4.740822	AACGATGCCCACCTGCCC	62.741	66.667	0.00	0.00	0.00	5.36
2734	2872	1.882311	GCATCCACAATCGGTTGCA	59.118	52.632	8.70	0.00	46.62	4.08
2735	2873	1.139520	GGCATCCACAATCGGTTGC	59.860	57.895	8.70	4.74	46.65	4.17
2739	2883	2.514592	AGCGGCATCCACAATCGG	60.515	61.111	1.45	0.00	0.00	4.18
2756	2904	2.268920	GCTGCCGGGTTGATGAGA	59.731	61.111	2.18	0.00	0.00	3.27
2758	2906	2.891941	GATGGCTGCCGGGTTGATGA	62.892	60.000	14.98	0.00	0.00	2.92
2778	2934	5.977635	CCTATGCGGGACTGAATATTATCA	58.022	41.667	0.00	0.00	0.00	2.15
2801	2957	4.123506	GCTGTCAGTTAGCTTATCTTCCC	58.876	47.826	0.93	0.00	38.14	3.97
2824	2980	5.471257	GGAGGAGTTCAGTTACTGTTAGTG	58.529	45.833	12.41	0.00	32.61	2.74
2853	3012	1.351153	GTCTGCTCTCGGTTGCTAAC	58.649	55.000	0.00	0.00	0.00	2.34
2866	3044	5.179555	GTCTGAATTTTTACTTCCGTCTGCT	59.820	40.000	0.00	0.00	0.00	4.24
2878	3056	4.000988	GTCTCCAGCGGTCTGAATTTTTA	58.999	43.478	0.00	0.00	42.95	1.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.