Multiple sequence alignment - TraesCS3A01G522100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G522100 chr3A 100.000 2655 0 0 2834 5488 738305684 738303030 0.000000e+00 4903.0
1 TraesCS3A01G522100 chr3A 100.000 2492 0 0 1 2492 738308517 738306026 0.000000e+00 4602.0
2 TraesCS3A01G522100 chr3A 90.621 1418 126 6 2974 4390 738692105 738690694 0.000000e+00 1875.0
3 TraesCS3A01G522100 chr3A 86.440 1556 185 14 3011 4545 738238072 738236522 0.000000e+00 1681.0
4 TraesCS3A01G522100 chr3A 86.292 1532 191 16 2974 4501 738561259 738559743 0.000000e+00 1648.0
5 TraesCS3A01G522100 chr3A 86.292 1532 191 16 2974 4501 738582922 738581406 0.000000e+00 1648.0
6 TraesCS3A01G522100 chr3A 85.966 1532 196 16 2974 4501 738661413 738659897 0.000000e+00 1620.0
7 TraesCS3A01G522100 chr3A 84.446 1633 211 21 875 2492 738694143 738692539 0.000000e+00 1568.0
8 TraesCS3A01G522100 chr3A 85.705 1490 203 9 3148 4632 738855465 738853981 0.000000e+00 1563.0
9 TraesCS3A01G522100 chr3A 93.119 683 43 2 930 1612 738808085 738807407 0.000000e+00 998.0
10 TraesCS3A01G522100 chr3A 82.073 1071 162 16 773 1823 738251071 738250011 0.000000e+00 887.0
11 TraesCS3A01G522100 chr3A 84.036 664 78 16 4817 5471 736261776 736261132 1.010000e-171 614.0
12 TraesCS3A01G522100 chr3A 84.056 646 74 16 4826 5462 736263789 736264414 3.660000e-166 595.0
13 TraesCS3A01G522100 chr3A 83.591 646 79 22 4826 5462 386517077 386516450 1.020000e-161 580.0
14 TraesCS3A01G522100 chr3A 78.114 859 96 42 1 836 738694939 738694150 1.390000e-125 460.0
15 TraesCS3A01G522100 chr3A 93.464 306 17 1 1610 1915 738804553 738804251 8.380000e-123 451.0
16 TraesCS3A01G522100 chr3A 83.333 426 46 5 1 402 738820095 738819671 2.410000e-98 370.0
17 TraesCS3A01G522100 chr3A 81.948 421 42 13 416 836 738808859 738808473 5.300000e-85 326.0
18 TraesCS3A01G522100 chr3A 88.519 270 28 3 2225 2492 738759359 738759091 1.910000e-84 324.0
19 TraesCS3A01G522100 chr3A 82.692 260 38 3 1979 2232 738760405 738760147 1.990000e-54 224.0
20 TraesCS3A01G522100 chr3A 86.310 168 23 0 2004 2171 738432461 738432628 3.380000e-42 183.0
21 TraesCS3A01G522100 chr3A 86.310 168 23 0 2004 2171 738521684 738521851 3.380000e-42 183.0
22 TraesCS3A01G522100 chr3A 85.714 168 24 0 2004 2171 738619841 738620008 1.570000e-40 178.0
23 TraesCS3A01G522100 chr3A 84.483 174 22 5 2321 2491 738224122 738223951 3.400000e-37 167.0
24 TraesCS3A01G522100 chr3A 82.234 197 22 4 137 324 738907852 738907660 2.050000e-34 158.0
25 TraesCS3A01G522100 chr3A 81.218 197 24 4 137 324 738319173 738318981 4.430000e-31 147.0
26 TraesCS3A01G522100 chr3A 98.462 65 1 0 875 939 738808466 738808402 1.250000e-21 115.0
27 TraesCS3A01G522100 chr3A 94.737 38 1 1 764 801 738719005 738718969 2.140000e-04 58.4
28 TraesCS3A01G522100 chr3A 94.444 36 0 2 390 424 738506765 738506731 3.000000e-03 54.7
29 TraesCS3A01G522100 chr3A 94.444 36 0 2 390 424 738603126 738603092 3.000000e-03 54.7
30 TraesCS3A01G522100 chr3A 100.000 29 0 0 390 418 738682063 738682035 3.000000e-03 54.7
31 TraesCS3A01G522100 chr3B 89.934 1808 167 13 2972 4772 816172336 816170537 0.000000e+00 2316.0
32 TraesCS3A01G522100 chr3B 81.667 600 101 7 1319 1913 816173733 816173138 1.780000e-134 490.0
33 TraesCS3A01G522100 chr3B 76.263 653 120 22 1860 2492 816155380 816154743 1.150000e-81 315.0
34 TraesCS3A01G522100 chr3B 82.315 311 49 4 1606 1913 816177473 816177166 1.170000e-66 265.0
35 TraesCS3A01G522100 chr3B 82.562 281 20 13 4835 5110 389946966 389946710 2.570000e-53 220.0
36 TraesCS3A01G522100 chr3B 85.625 160 23 0 2007 2166 816178456 816178615 9.450000e-38 169.0
37 TraesCS3A01G522100 chrUn 89.657 1808 172 13 2972 4772 42327102 42325303 0.000000e+00 2289.0
38 TraesCS3A01G522100 chrUn 89.171 1302 131 9 2969 4266 399337259 399338554 0.000000e+00 1615.0
39 TraesCS3A01G522100 chrUn 79.940 992 165 24 941 1913 42328880 42327904 0.000000e+00 699.0
40 TraesCS3A01G522100 chrUn 80.462 865 141 20 941 1789 391259885 391259033 2.160000e-178 636.0
41 TraesCS3A01G522100 chrUn 80.352 682 124 8 1237 1913 367634632 367633956 4.900000e-140 508.0
42 TraesCS3A01G522100 chrUn 85.625 160 23 0 2007 2166 42334732 42334891 9.450000e-38 169.0
43 TraesCS3A01G522100 chrUn 85.625 160 23 0 2007 2166 391581765 391581924 9.450000e-38 169.0
44 TraesCS3A01G522100 chr3D 84.489 1702 233 19 2974 4657 606773669 606771981 0.000000e+00 1652.0
45 TraesCS3A01G522100 chr3D 87.606 1412 166 7 2982 4390 605973352 605974757 0.000000e+00 1629.0
46 TraesCS3A01G522100 chr3D 87.237 1426 163 17 2972 4390 605676351 605677764 0.000000e+00 1607.0
47 TraesCS3A01G522100 chr3D 87.734 1386 158 10 2977 4357 605955241 605956619 0.000000e+00 1607.0
48 TraesCS3A01G522100 chr3D 81.189 1127 162 31 827 1928 606000188 606001289 0.000000e+00 861.0
49 TraesCS3A01G522100 chr3D 78.328 1172 201 38 1029 2175 606775935 606774792 0.000000e+00 708.0
50 TraesCS3A01G522100 chr3D 78.621 870 163 15 1029 1892 605747452 605748304 6.210000e-154 555.0
51 TraesCS3A01G522100 chr3D 86.982 169 22 0 2003 2171 605709068 605708900 2.020000e-44 191.0
52 TraesCS3A01G522100 chr3D 84.286 70 8 3 732 801 605578317 605578383 1.280000e-06 65.8
53 TraesCS3A01G522100 chr3D 97.059 34 1 0 768 801 605996131 605996164 2.140000e-04 58.4
54 TraesCS3A01G522100 chr5D 86.197 1420 185 9 2977 4389 500138226 500136811 0.000000e+00 1526.0
55 TraesCS3A01G522100 chr5D 78.155 824 158 17 889 1698 500140284 500139469 6.340000e-139 505.0
56 TraesCS3A01G522100 chr5D 78.571 644 115 12 1860 2492 500139355 500138724 2.380000e-108 403.0
57 TraesCS3A01G522100 chr2A 84.414 648 75 19 4826 5462 501579188 501579820 1.010000e-171 614.0
58 TraesCS3A01G522100 chr4B 84.308 650 74 19 4826 5464 29294733 29295365 1.310000e-170 610.0
59 TraesCS3A01G522100 chr4B 80.816 245 24 12 5232 5464 72884059 72883826 2.630000e-38 171.0
60 TraesCS3A01G522100 chr6A 84.351 639 73 19 4835 5462 294855054 294854432 7.870000e-168 601.0
61 TraesCS3A01G522100 chr5B 79.665 836 141 20 883 1699 621471350 621470525 4.770000e-160 575.0
62 TraesCS3A01G522100 chr5B 78.909 825 150 20 889 1698 621480144 621479329 6.260000e-149 538.0
63 TraesCS3A01G522100 chr5B 80.033 611 104 12 1894 2492 621479181 621478577 2.350000e-118 436.0
64 TraesCS3A01G522100 chr5B 78.617 622 103 21 1894 2492 621470387 621469773 8.620000e-103 385.0
65 TraesCS3A01G522100 chr5B 91.667 60 4 1 359 418 621471982 621471924 1.270000e-11 82.4
66 TraesCS3A01G522100 chr5A 78.973 837 147 19 883 1699 624714049 624713222 1.340000e-150 544.0
67 TraesCS3A01G522100 chr5A 78.890 829 148 21 889 1701 624725967 624725150 2.250000e-148 536.0
68 TraesCS3A01G522100 chr5A 81.496 508 81 6 1987 2492 624724902 624724406 6.620000e-109 405.0
69 TraesCS3A01G522100 chr5A 78.778 622 102 21 1894 2492 624713084 624712470 1.850000e-104 390.0
70 TraesCS3A01G522100 chr1A 84.854 515 60 15 4958 5462 462703189 462702683 2.280000e-138 503.0
71 TraesCS3A01G522100 chr2D 84.158 505 55 20 4826 5321 633162920 633162432 2.990000e-127 466.0
72 TraesCS3A01G522100 chr4A 82.979 188 27 2 5279 5461 437421723 437421910 1.220000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G522100 chr3A 738303030 738308517 5487 True 4752.500000 4903 100.000000 1 5488 2 chr3A.!!$R17 5487
1 TraesCS3A01G522100 chr3A 738236522 738238072 1550 True 1681.000000 1681 86.440000 3011 4545 1 chr3A.!!$R4 1534
2 TraesCS3A01G522100 chr3A 738559743 738561259 1516 True 1648.000000 1648 86.292000 2974 4501 1 chr3A.!!$R8 1527
3 TraesCS3A01G522100 chr3A 738581406 738582922 1516 True 1648.000000 1648 86.292000 2974 4501 1 chr3A.!!$R9 1527
4 TraesCS3A01G522100 chr3A 738659897 738661413 1516 True 1620.000000 1620 85.966000 2974 4501 1 chr3A.!!$R11 1527
5 TraesCS3A01G522100 chr3A 738853981 738855465 1484 True 1563.000000 1563 85.705000 3148 4632 1 chr3A.!!$R15 1484
6 TraesCS3A01G522100 chr3A 738690694 738694939 4245 True 1301.000000 1875 84.393667 1 4390 3 chr3A.!!$R18 4389
7 TraesCS3A01G522100 chr3A 738250011 738251071 1060 True 887.000000 887 82.073000 773 1823 1 chr3A.!!$R5 1050
8 TraesCS3A01G522100 chr3A 736261132 736261776 644 True 614.000000 614 84.036000 4817 5471 1 chr3A.!!$R2 654
9 TraesCS3A01G522100 chr3A 736263789 736264414 625 False 595.000000 595 84.056000 4826 5462 1 chr3A.!!$F1 636
10 TraesCS3A01G522100 chr3A 386516450 386517077 627 True 580.000000 580 83.591000 4826 5462 1 chr3A.!!$R1 636
11 TraesCS3A01G522100 chr3A 738804251 738808859 4608 True 472.500000 998 91.748250 416 1915 4 chr3A.!!$R20 1499
12 TraesCS3A01G522100 chr3A 738759091 738760405 1314 True 274.000000 324 85.605500 1979 2492 2 chr3A.!!$R19 513
13 TraesCS3A01G522100 chr3B 816170537 816177473 6936 True 1023.666667 2316 84.638667 1319 4772 3 chr3B.!!$R3 3453
14 TraesCS3A01G522100 chr3B 816154743 816155380 637 True 315.000000 315 76.263000 1860 2492 1 chr3B.!!$R2 632
15 TraesCS3A01G522100 chrUn 399337259 399338554 1295 False 1615.000000 1615 89.171000 2969 4266 1 chrUn.!!$F3 1297
16 TraesCS3A01G522100 chrUn 42325303 42328880 3577 True 1494.000000 2289 84.798500 941 4772 2 chrUn.!!$R3 3831
17 TraesCS3A01G522100 chrUn 391259033 391259885 852 True 636.000000 636 80.462000 941 1789 1 chrUn.!!$R2 848
18 TraesCS3A01G522100 chrUn 367633956 367634632 676 True 508.000000 508 80.352000 1237 1913 1 chrUn.!!$R1 676
19 TraesCS3A01G522100 chr3D 605973352 605974757 1405 False 1629.000000 1629 87.606000 2982 4390 1 chr3D.!!$F5 1408
20 TraesCS3A01G522100 chr3D 605676351 605677764 1413 False 1607.000000 1607 87.237000 2972 4390 1 chr3D.!!$F2 1418
21 TraesCS3A01G522100 chr3D 605955241 605956619 1378 False 1607.000000 1607 87.734000 2977 4357 1 chr3D.!!$F4 1380
22 TraesCS3A01G522100 chr3D 606771981 606775935 3954 True 1180.000000 1652 81.408500 1029 4657 2 chr3D.!!$R2 3628
23 TraesCS3A01G522100 chr3D 606000188 606001289 1101 False 861.000000 861 81.189000 827 1928 1 chr3D.!!$F7 1101
24 TraesCS3A01G522100 chr3D 605747452 605748304 852 False 555.000000 555 78.621000 1029 1892 1 chr3D.!!$F3 863
25 TraesCS3A01G522100 chr5D 500136811 500140284 3473 True 811.333333 1526 80.974333 889 4389 3 chr5D.!!$R1 3500
26 TraesCS3A01G522100 chr2A 501579188 501579820 632 False 614.000000 614 84.414000 4826 5462 1 chr2A.!!$F1 636
27 TraesCS3A01G522100 chr4B 29294733 29295365 632 False 610.000000 610 84.308000 4826 5464 1 chr4B.!!$F1 638
28 TraesCS3A01G522100 chr6A 294854432 294855054 622 True 601.000000 601 84.351000 4835 5462 1 chr6A.!!$R1 627
29 TraesCS3A01G522100 chr5B 621478577 621480144 1567 True 487.000000 538 79.471000 889 2492 2 chr5B.!!$R2 1603
30 TraesCS3A01G522100 chr5B 621469773 621471982 2209 True 347.466667 575 83.316333 359 2492 3 chr5B.!!$R1 2133
31 TraesCS3A01G522100 chr5A 624724406 624725967 1561 True 470.500000 536 80.193000 889 2492 2 chr5A.!!$R2 1603
32 TraesCS3A01G522100 chr5A 624712470 624714049 1579 True 467.000000 544 78.875500 883 2492 2 chr5A.!!$R1 1609
33 TraesCS3A01G522100 chr1A 462702683 462703189 506 True 503.000000 503 84.854000 4958 5462 1 chr1A.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
836 1005 0.032403 CCACCAAAGCACACCACATG 59.968 55.0 0.00 0.00 0.00 3.21 F
837 1006 0.032403 CACCAAAGCACACCACATGG 59.968 55.0 0.00 0.00 42.17 3.66 F
881 1079 0.035881 TCTTCCTTGGCTCAGCTGTG 59.964 55.0 14.67 12.95 0.00 3.66 F
2262 8435 0.701731 TGGACCAACAATCGGGGAAT 59.298 50.0 0.00 0.00 0.00 3.01 F
2870 9776 0.613853 CCCCTCCGTCTACAGTTGGA 60.614 60.0 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 8416 0.701731 ATTCCCCGATTGTTGGTCCA 59.298 50.0 0.00 0.0 0.00 4.02 R
2352 8528 0.991146 TATTCTGTTGGGCCTCTGCA 59.009 50.0 4.53 0.0 40.13 4.41 R
2851 9757 0.613853 TCCAACTGTAGACGGAGGGG 60.614 60.0 0.00 0.0 0.00 4.79 R
3146 10379 0.746659 GCAGAGGCTGTGGTTTTGTT 59.253 50.0 14.04 0.0 36.96 2.83 R
4819 12090 0.184933 GCAACCCACAGGCCCATATA 59.815 55.0 0.00 0.0 36.11 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.107508 CTTGGTGATCCGACATGCCT 60.108 55.000 0.00 0.00 36.30 4.75
57 58 3.294943 CTTTGCGCTCAAGTCTTCTTTG 58.705 45.455 9.73 0.00 33.12 2.77
65 66 4.201950 GCTCAAGTCTTCTTTGCACTCAAA 60.202 41.667 0.00 0.00 39.67 2.69
75 76 1.581934 TGCACTCAAAGGTTCTCACG 58.418 50.000 0.00 0.00 0.00 4.35
81 82 4.209288 CACTCAAAGGTTCTCACGTACTTG 59.791 45.833 0.00 0.00 0.00 3.16
101 102 1.153549 GCTGTGTAGCCCTTCTCCG 60.154 63.158 0.00 0.00 44.33 4.63
124 125 2.051345 GAACAACGCCCGCACAAG 60.051 61.111 0.00 0.00 0.00 3.16
134 135 2.358737 CGCACAAGGGACCAGACC 60.359 66.667 0.00 0.00 0.00 3.85
154 155 6.039047 CAGACCAACCAGATTCTTGGAATATG 59.961 42.308 9.40 7.62 39.58 1.78
173 174 9.622004 GGAATATGTTCAGAATAATCATTGCAG 57.378 33.333 4.48 0.00 36.01 4.41
197 199 4.937620 TCATGTACCTGATTCTTTGTCTGC 59.062 41.667 0.00 0.00 0.00 4.26
198 200 4.350368 TGTACCTGATTCTTTGTCTGCA 57.650 40.909 0.00 0.00 0.00 4.41
242 248 3.697045 TGTTTACCCTGTGTTCTTGGTTG 59.303 43.478 0.00 0.00 32.27 3.77
252 258 3.565482 GTGTTCTTGGTTGCATCTTGAGA 59.435 43.478 0.00 0.00 0.00 3.27
257 263 2.585330 TGGTTGCATCTTGAGAAAGCA 58.415 42.857 7.22 7.22 37.37 3.91
260 266 2.975410 TGCATCTTGAGAAAGCAACG 57.025 45.000 8.46 0.00 36.61 4.10
261 267 1.069022 TGCATCTTGAGAAAGCAACGC 60.069 47.619 8.46 0.00 36.61 4.84
264 270 2.831685 TCTTGAGAAAGCAACGCCTA 57.168 45.000 0.00 0.00 0.00 3.93
287 293 8.683615 CCTAAATTGGAATGGACTTTAGTTACC 58.316 37.037 0.00 0.00 30.84 2.85
297 303 5.221501 TGGACTTTAGTTACCGTTGCTTAGT 60.222 40.000 0.00 0.00 0.00 2.24
298 304 5.698089 GGACTTTAGTTACCGTTGCTTAGTT 59.302 40.000 0.00 0.00 0.00 2.24
299 305 6.868339 GGACTTTAGTTACCGTTGCTTAGTTA 59.132 38.462 0.00 0.00 0.00 2.24
300 306 7.062722 GGACTTTAGTTACCGTTGCTTAGTTAG 59.937 40.741 0.00 0.00 0.00 2.34
367 404 5.246307 GTTTCAGTTATGGTCACCTAGCTT 58.754 41.667 0.00 0.00 0.00 3.74
376 413 2.152016 GTCACCTAGCTTGGTTGGAAC 58.848 52.381 17.77 9.63 38.45 3.62
377 414 1.771854 TCACCTAGCTTGGTTGGAACA 59.228 47.619 17.77 0.00 38.45 3.18
467 547 2.283145 TCTACCGATGGCCTACCTAC 57.717 55.000 3.32 0.00 36.63 3.18
469 549 2.981784 TCTACCGATGGCCTACCTACTA 59.018 50.000 3.32 0.00 36.63 1.82
470 550 1.992538 ACCGATGGCCTACCTACTAC 58.007 55.000 3.32 0.00 36.63 2.73
482 562 5.014858 CCTACCTACTACTGGTGAGTTTCA 58.985 45.833 0.00 0.00 38.42 2.69
484 564 5.662674 ACCTACTACTGGTGAGTTTCATC 57.337 43.478 0.00 0.00 36.30 2.92
511 592 4.226761 GTTCCCTTTTTCATGTTGTAGCG 58.773 43.478 0.00 0.00 0.00 4.26
519 600 2.698803 TCATGTTGTAGCGTGCTCATT 58.301 42.857 0.00 0.00 0.00 2.57
521 602 4.249661 TCATGTTGTAGCGTGCTCATTTA 58.750 39.130 0.00 0.00 0.00 1.40
522 603 4.092821 TCATGTTGTAGCGTGCTCATTTAC 59.907 41.667 0.00 0.00 0.00 2.01
523 604 3.659786 TGTTGTAGCGTGCTCATTTACT 58.340 40.909 0.00 0.00 0.00 2.24
524 605 3.431912 TGTTGTAGCGTGCTCATTTACTG 59.568 43.478 0.00 0.00 0.00 2.74
525 606 3.586100 TGTAGCGTGCTCATTTACTGA 57.414 42.857 0.00 0.00 0.00 3.41
526 607 3.920446 TGTAGCGTGCTCATTTACTGAA 58.080 40.909 0.00 0.00 32.14 3.02
527 608 4.311606 TGTAGCGTGCTCATTTACTGAAA 58.688 39.130 0.00 0.00 32.14 2.69
528 609 4.752604 TGTAGCGTGCTCATTTACTGAAAA 59.247 37.500 0.00 0.00 32.14 2.29
529 610 4.829064 AGCGTGCTCATTTACTGAAAAA 57.171 36.364 0.00 0.00 32.14 1.94
530 611 4.787598 AGCGTGCTCATTTACTGAAAAAG 58.212 39.130 0.00 0.00 32.14 2.27
531 612 3.914364 GCGTGCTCATTTACTGAAAAAGG 59.086 43.478 0.00 0.00 32.14 3.11
532 613 3.914364 CGTGCTCATTTACTGAAAAAGGC 59.086 43.478 0.00 0.00 32.14 4.35
533 614 4.320494 CGTGCTCATTTACTGAAAAAGGCT 60.320 41.667 0.00 0.00 32.14 4.58
534 615 5.532557 GTGCTCATTTACTGAAAAAGGCTT 58.467 37.500 0.00 0.00 32.14 4.35
535 616 5.985530 GTGCTCATTTACTGAAAAAGGCTTT 59.014 36.000 6.68 6.68 32.14 3.51
536 617 6.144563 GTGCTCATTTACTGAAAAAGGCTTTC 59.855 38.462 13.76 2.15 32.14 2.62
537 618 5.343325 GCTCATTTACTGAAAAAGGCTTTCG 59.657 40.000 13.76 5.12 32.14 3.46
538 619 5.219633 TCATTTACTGAAAAAGGCTTTCGC 58.780 37.500 13.76 8.85 0.00 4.70
539 620 7.545238 CTCATTTACTGAAAAAGGCTTTCGCC 61.545 42.308 13.76 6.15 44.74 5.54
540 621 9.800913 CTCATTTACTGAAAAAGGCTTTCGCCA 62.801 40.741 13.76 10.26 45.93 5.69
549 630 1.420312 GCTTTCGCCACGTTCTAGC 59.580 57.895 0.00 0.00 0.00 3.42
582 676 6.743575 TTTAATGCCTTTCTTGTCTAGAGC 57.256 37.500 0.00 0.00 33.51 4.09
583 677 3.988976 ATGCCTTTCTTGTCTAGAGCA 57.011 42.857 0.00 0.00 36.41 4.26
607 701 5.227569 ACATTTGGAAACCCAGAAAATCC 57.772 39.130 0.00 0.00 34.71 3.01
656 752 2.101582 CAGGAACAGGCGTAGATTAGCT 59.898 50.000 0.00 0.00 0.00 3.32
663 759 4.589374 ACAGGCGTAGATTAGCTCCTTTAT 59.411 41.667 0.00 0.00 0.00 1.40
694 806 4.276678 CAGACTTGTTGATTTCTTCCTGCA 59.723 41.667 0.00 0.00 0.00 4.41
708 820 1.202592 TCCTGCAGCACGACTTACAAA 60.203 47.619 8.66 0.00 0.00 2.83
709 821 1.195448 CCTGCAGCACGACTTACAAAG 59.805 52.381 8.66 0.00 0.00 2.77
710 822 1.867233 CTGCAGCACGACTTACAAAGT 59.133 47.619 0.00 0.00 46.38 2.66
711 823 2.285083 TGCAGCACGACTTACAAAGTT 58.715 42.857 0.00 0.00 43.03 2.66
712 824 3.459145 TGCAGCACGACTTACAAAGTTA 58.541 40.909 0.00 0.00 43.03 2.24
713 825 3.246699 TGCAGCACGACTTACAAAGTTAC 59.753 43.478 0.00 0.00 43.03 2.50
714 826 3.246699 GCAGCACGACTTACAAAGTTACA 59.753 43.478 0.00 0.00 43.03 2.41
715 827 4.260456 GCAGCACGACTTACAAAGTTACAA 60.260 41.667 0.00 0.00 43.03 2.41
716 828 5.560183 GCAGCACGACTTACAAAGTTACAAT 60.560 40.000 0.00 0.00 43.03 2.71
729 841 4.537135 AGTTACAATGTCACGGACTGAT 57.463 40.909 0.00 0.00 33.15 2.90
755 906 6.670027 AGTCATGGTCTTCTACTTTACATCCT 59.330 38.462 0.00 0.00 0.00 3.24
769 929 8.964476 ACTTTACATCCTATCAAATGTACCAG 57.036 34.615 0.00 0.00 37.92 4.00
820 989 1.386533 CATCTCCTTCCACATGCCAC 58.613 55.000 0.00 0.00 0.00 5.01
836 1005 0.032403 CCACCAAAGCACACCACATG 59.968 55.000 0.00 0.00 0.00 3.21
837 1006 0.032403 CACCAAAGCACACCACATGG 59.968 55.000 0.00 0.00 42.17 3.66
840 1028 0.040157 CAAAGCACACCACATGGACG 60.040 55.000 4.53 0.00 38.94 4.79
872 1060 2.026822 TCCTCTTCATGTCTTCCTTGGC 60.027 50.000 0.00 0.00 0.00 4.52
881 1079 0.035881 TCTTCCTTGGCTCAGCTGTG 59.964 55.000 14.67 12.95 0.00 3.66
959 1487 1.072159 ACTGCTGCCTGACCTGAAC 59.928 57.895 0.00 0.00 0.00 3.18
1307 1853 2.368875 AGGTGATCAAACTCGACAACCT 59.631 45.455 0.00 0.00 32.00 3.50
1315 1861 4.570772 TCAAACTCGACAACCTTCTTTCTG 59.429 41.667 0.00 0.00 0.00 3.02
1319 1865 5.667466 ACTCGACAACCTTCTTTCTGTTTA 58.333 37.500 0.00 0.00 0.00 2.01
1320 1866 6.289064 ACTCGACAACCTTCTTTCTGTTTAT 58.711 36.000 0.00 0.00 0.00 1.40
1322 1868 7.929785 ACTCGACAACCTTCTTTCTGTTTATAA 59.070 33.333 0.00 0.00 0.00 0.98
1373 3800 4.097551 TCCACATGAAATCTGGTGTCAA 57.902 40.909 0.00 0.00 0.00 3.18
1377 3804 5.158494 CACATGAAATCTGGTGTCAATGTG 58.842 41.667 0.00 8.34 31.22 3.21
1536 3969 2.196595 CCAAGAACCCCAGAGATGGTA 58.803 52.381 0.00 0.00 33.52 3.25
1742 7034 4.323417 TCGTGGCAGATAGTTGACAAATT 58.677 39.130 0.00 0.00 37.96 1.82
1816 7113 2.233654 GCCGAGTGCACTGATAGCG 61.234 63.158 27.27 20.40 40.77 4.26
1915 7221 2.799126 TACAGGCAACCCCTACATTG 57.201 50.000 0.00 0.00 44.09 2.82
1948 7260 1.409427 CCAACGATAGAGGTGAGTCCC 59.591 57.143 0.00 0.00 41.38 4.46
1949 7261 2.100197 CAACGATAGAGGTGAGTCCCA 58.900 52.381 0.00 0.00 41.38 4.37
1961 7273 3.877508 GGTGAGTCCCATTTTCCTAATCG 59.122 47.826 0.00 0.00 0.00 3.34
1969 7285 4.576463 CCCATTTTCCTAATCGAGACCAAG 59.424 45.833 0.00 0.00 0.00 3.61
1998 7320 6.027749 CAGCTGTTACGTATTTTGGGAATTC 58.972 40.000 5.25 0.00 0.00 2.17
2001 7367 6.691388 GCTGTTACGTATTTTGGGAATTCATC 59.309 38.462 7.93 0.00 0.00 2.92
2048 7414 3.244112 CCAGGGTATAATCCAACTCCGAC 60.244 52.174 0.00 0.00 0.00 4.79
2055 7421 3.636231 CCAACTCCGACCAGGGCA 61.636 66.667 0.00 0.00 41.52 5.36
2109 7475 2.565841 CAATTCCCCTTCGGCTTAGAG 58.434 52.381 0.00 0.00 0.00 2.43
2184 7550 1.001641 AGCTGCCCTGGTCATGTTC 60.002 57.895 0.00 0.00 0.00 3.18
2188 7560 1.191489 TGCCCTGGTCATGTTCGAGA 61.191 55.000 0.00 0.00 0.00 4.04
2190 7562 1.726853 CCCTGGTCATGTTCGAGAAC 58.273 55.000 8.89 8.89 41.50 3.01
2262 8435 0.701731 TGGACCAACAATCGGGGAAT 59.298 50.000 0.00 0.00 0.00 3.01
2328 8504 7.363268 GCACATGGGTTATTTTTCTCTCTGAAT 60.363 37.037 0.00 0.00 34.24 2.57
2352 8528 3.077359 GGTTGCTGCTAATCTGAGTTGT 58.923 45.455 0.00 0.00 0.00 3.32
2451 9357 1.134788 GTCTATGCTGGTTACCGCTGT 60.135 52.381 16.26 9.52 0.00 4.40
2867 9773 4.455366 CCCCCTCCGTCTACAGTT 57.545 61.111 0.00 0.00 0.00 3.16
2868 9774 1.898154 CCCCCTCCGTCTACAGTTG 59.102 63.158 0.00 0.00 0.00 3.16
2869 9775 1.614241 CCCCCTCCGTCTACAGTTGG 61.614 65.000 0.00 0.00 0.00 3.77
2870 9776 0.613853 CCCCTCCGTCTACAGTTGGA 60.614 60.000 0.00 0.00 0.00 3.53
2873 9779 2.418746 CCCTCCGTCTACAGTTGGAATG 60.419 54.545 0.00 0.00 0.00 2.67
2882 9788 6.849305 CGTCTACAGTTGGAATGTAAAAACAC 59.151 38.462 0.00 0.00 32.96 3.32
2885 9791 5.336744 ACAGTTGGAATGTAAAAACACGTG 58.663 37.500 15.48 15.48 0.00 4.49
2886 9792 4.206200 CAGTTGGAATGTAAAAACACGTGC 59.794 41.667 17.22 0.00 0.00 5.34
2887 9793 4.097286 AGTTGGAATGTAAAAACACGTGCT 59.903 37.500 17.22 0.00 0.00 4.40
2888 9794 5.297278 AGTTGGAATGTAAAAACACGTGCTA 59.703 36.000 17.22 0.00 0.00 3.49
2889 9795 5.950758 TGGAATGTAAAAACACGTGCTAT 57.049 34.783 17.22 0.00 0.00 2.97
2891 9797 6.740110 TGGAATGTAAAAACACGTGCTATTT 58.260 32.000 17.22 15.98 0.00 1.40
2893 9799 8.350722 TGGAATGTAAAAACACGTGCTATTTTA 58.649 29.630 17.22 19.79 0.00 1.52
2895 9801 9.601971 GAATGTAAAAACACGTGCTATTTTAGA 57.398 29.630 23.55 22.86 30.38 2.10
2896 9802 9.953697 AATGTAAAAACACGTGCTATTTTAGAA 57.046 25.926 23.55 18.24 30.38 2.10
2944 9874 8.871686 ATTTTTGCTACTTCTACTTGGTTTTG 57.128 30.769 0.00 0.00 0.00 2.44
2952 9882 7.264373 ACTTCTACTTGGTTTTGTCATTCAG 57.736 36.000 0.00 0.00 0.00 3.02
2961 9891 5.007682 GGTTTTGTCATTCAGGTAGGCTTA 58.992 41.667 0.00 0.00 0.00 3.09
2963 9893 6.349363 GGTTTTGTCATTCAGGTAGGCTTAAG 60.349 42.308 0.00 0.00 0.00 1.85
2970 9946 8.398665 GTCATTCAGGTAGGCTTAAGTTAATTG 58.601 37.037 4.02 0.00 0.00 2.32
3043 10273 4.100529 GACATCAATGAATGCCTTCAACG 58.899 43.478 8.55 3.38 44.29 4.10
3049 10279 0.804989 GAATGCCTTCAACGGGACAG 59.195 55.000 0.00 0.00 0.00 3.51
3076 10306 2.621070 AGGGATCTGCCATAATACCGT 58.379 47.619 0.00 0.00 38.95 4.83
3146 10379 7.418337 TCCATTAAAGATGCAGTGTACTAGA 57.582 36.000 0.00 0.00 0.00 2.43
3154 10387 5.701290 AGATGCAGTGTACTAGAACAAAACC 59.299 40.000 0.00 0.00 0.00 3.27
3360 10613 5.790593 AGCAACTACGGAAGAACTATTTCA 58.209 37.500 0.00 0.00 33.72 2.69
3586 10839 4.502016 GTCATTGAGCAGTCTGAGATCAA 58.498 43.478 3.32 10.50 34.64 2.57
3882 11135 8.997323 CCTCAAATATACTCTTGGATGTGAATC 58.003 37.037 0.00 0.00 0.00 2.52
3923 11176 1.679311 TGGTGCATCCAGACTGGTC 59.321 57.895 21.06 11.83 41.93 4.02
3942 11195 4.022762 TGGTCCCAATTAATCAAACACACG 60.023 41.667 0.00 0.00 0.00 4.49
3999 11252 7.235812 ACTTAGATCCAGAGTATTTCCATACCC 59.764 40.741 0.00 0.00 36.63 3.69
4101 11354 1.399440 CAAGTGAATCAGGCACCATCG 59.601 52.381 0.00 0.00 36.95 3.84
4146 11399 1.190643 GGAGTTCAGTGAGGGGAGAG 58.809 60.000 0.00 0.00 0.00 3.20
4166 11419 6.351881 GGAGAGTCATGGGTATTGTTAGTTCA 60.352 42.308 0.00 0.00 0.00 3.18
4256 11509 1.466167 CTGCATGGTGAAGAAAGACCG 59.534 52.381 0.00 0.00 34.69 4.79
4287 11540 0.531200 GGTGGAGACGGAACTACAGG 59.469 60.000 0.00 0.00 30.77 4.00
4306 11559 0.796927 GCTCTACGGGCAAAACAGAC 59.203 55.000 0.00 0.00 0.00 3.51
4320 11573 4.543590 AAACAGACGGAATCATCTCAGT 57.456 40.909 0.00 0.00 0.00 3.41
4512 11777 8.122952 AGATGCGTTTGTTAAGCTCATAATAAC 58.877 33.333 0.00 0.00 0.00 1.89
4632 11900 7.037438 CAGTGTTACGTAGGTTGGTATTGTAT 58.963 38.462 0.00 0.00 0.00 2.29
4633 11901 8.190122 CAGTGTTACGTAGGTTGGTATTGTATA 58.810 37.037 0.00 0.00 0.00 1.47
4667 11935 7.639113 ATTTTGGGATAATTAAAGAGCGTCA 57.361 32.000 0.00 0.00 0.00 4.35
4672 11940 7.676004 TGGGATAATTAAAGAGCGTCATGATA 58.324 34.615 0.00 0.00 0.00 2.15
4673 11941 8.321353 TGGGATAATTAAAGAGCGTCATGATAT 58.679 33.333 0.00 0.00 0.00 1.63
4680 11948 9.935241 ATTAAAGAGCGTCATGATATTATGAGT 57.065 29.630 10.26 0.00 37.72 3.41
4685 11953 8.768955 AGAGCGTCATGATATTATGAGTTTTTC 58.231 33.333 10.26 5.28 37.72 2.29
4686 11954 7.567571 AGCGTCATGATATTATGAGTTTTTCG 58.432 34.615 10.26 10.08 37.72 3.46
4687 11955 7.438160 AGCGTCATGATATTATGAGTTTTTCGA 59.562 33.333 10.26 0.00 37.72 3.71
4688 11956 8.061857 GCGTCATGATATTATGAGTTTTTCGAA 58.938 33.333 10.26 0.00 37.72 3.71
4699 11969 7.687941 ATGAGTTTTTCGAATAGGATTGTGT 57.312 32.000 0.00 0.00 0.00 3.72
4716 11986 8.257306 AGGATTGTGTTTGTTTATGAAAACTGT 58.743 29.630 3.01 0.00 44.44 3.55
4737 12008 6.436218 ACTGTTTGTTATTACCTTGGGATTCC 59.564 38.462 0.00 0.00 0.00 3.01
4760 12031 6.015265 TCCATGTTCATTGTGTTGATGACATT 60.015 34.615 0.00 0.00 41.10 2.71
4772 12043 8.075574 TGTGTTGATGACATTTTTATGAGACAC 58.924 33.333 0.00 0.00 41.10 3.67
4773 12044 7.538678 GTGTTGATGACATTTTTATGAGACACC 59.461 37.037 0.00 0.00 41.10 4.16
4774 12045 6.757897 TGATGACATTTTTATGAGACACCC 57.242 37.500 0.00 0.00 0.00 4.61
4775 12046 6.484288 TGATGACATTTTTATGAGACACCCT 58.516 36.000 0.00 0.00 0.00 4.34
4776 12047 6.947733 TGATGACATTTTTATGAGACACCCTT 59.052 34.615 0.00 0.00 0.00 3.95
4777 12048 6.817765 TGACATTTTTATGAGACACCCTTC 57.182 37.500 0.00 0.00 0.00 3.46
4778 12049 6.542821 TGACATTTTTATGAGACACCCTTCT 58.457 36.000 0.00 0.00 0.00 2.85
4779 12050 6.655003 TGACATTTTTATGAGACACCCTTCTC 59.345 38.462 0.00 0.00 42.24 2.87
4780 12051 5.946377 ACATTTTTATGAGACACCCTTCTCC 59.054 40.000 0.00 0.00 41.34 3.71
4781 12052 5.576563 TTTTTATGAGACACCCTTCTCCA 57.423 39.130 0.00 0.00 41.34 3.86
4782 12053 5.779241 TTTTATGAGACACCCTTCTCCAT 57.221 39.130 0.00 0.00 41.34 3.41
4783 12054 5.779241 TTTATGAGACACCCTTCTCCATT 57.221 39.130 0.00 0.00 41.34 3.16
4784 12055 3.922171 ATGAGACACCCTTCTCCATTC 57.078 47.619 0.00 0.00 41.34 2.67
4785 12056 1.909302 TGAGACACCCTTCTCCATTCC 59.091 52.381 0.00 0.00 41.34 3.01
4786 12057 1.909302 GAGACACCCTTCTCCATTCCA 59.091 52.381 0.00 0.00 36.74 3.53
4787 12058 2.507471 GAGACACCCTTCTCCATTCCAT 59.493 50.000 0.00 0.00 36.74 3.41
4788 12059 2.922283 AGACACCCTTCTCCATTCCATT 59.078 45.455 0.00 0.00 0.00 3.16
4789 12060 3.334881 AGACACCCTTCTCCATTCCATTT 59.665 43.478 0.00 0.00 0.00 2.32
4790 12061 4.540099 AGACACCCTTCTCCATTCCATTTA 59.460 41.667 0.00 0.00 0.00 1.40
4791 12062 4.600062 ACACCCTTCTCCATTCCATTTAC 58.400 43.478 0.00 0.00 0.00 2.01
4792 12063 3.954258 CACCCTTCTCCATTCCATTTACC 59.046 47.826 0.00 0.00 0.00 2.85
4793 12064 3.858638 ACCCTTCTCCATTCCATTTACCT 59.141 43.478 0.00 0.00 0.00 3.08
4794 12065 4.294970 ACCCTTCTCCATTCCATTTACCTT 59.705 41.667 0.00 0.00 0.00 3.50
4795 12066 4.646492 CCCTTCTCCATTCCATTTACCTTG 59.354 45.833 0.00 0.00 0.00 3.61
4796 12067 4.646492 CCTTCTCCATTCCATTTACCTTGG 59.354 45.833 0.00 0.00 35.45 3.61
4797 12068 4.249638 TCTCCATTCCATTTACCTTGGG 57.750 45.455 0.00 0.00 34.85 4.12
4798 12069 3.855599 TCTCCATTCCATTTACCTTGGGA 59.144 43.478 0.00 0.00 34.85 4.37
4799 12070 4.482025 TCTCCATTCCATTTACCTTGGGAT 59.518 41.667 0.00 0.00 32.28 3.85
4800 12071 5.043432 TCTCCATTCCATTTACCTTGGGATT 60.043 40.000 0.00 0.00 29.40 3.01
4801 12072 4.961730 TCCATTCCATTTACCTTGGGATTG 59.038 41.667 0.00 0.00 29.40 2.67
4802 12073 4.716287 CCATTCCATTTACCTTGGGATTGT 59.284 41.667 0.00 0.00 29.40 2.71
4803 12074 5.395546 CCATTCCATTTACCTTGGGATTGTG 60.396 44.000 0.00 0.00 29.40 3.33
4804 12075 4.396357 TCCATTTACCTTGGGATTGTGT 57.604 40.909 0.00 0.00 34.85 3.72
4805 12076 4.746466 TCCATTTACCTTGGGATTGTGTT 58.254 39.130 0.00 0.00 34.85 3.32
4806 12077 5.151454 TCCATTTACCTTGGGATTGTGTTT 58.849 37.500 0.00 0.00 34.85 2.83
4807 12078 5.011533 TCCATTTACCTTGGGATTGTGTTTG 59.988 40.000 0.00 0.00 34.85 2.93
4808 12079 5.221621 CCATTTACCTTGGGATTGTGTTTGT 60.222 40.000 0.00 0.00 0.00 2.83
4809 12080 5.941555 TTTACCTTGGGATTGTGTTTGTT 57.058 34.783 0.00 0.00 0.00 2.83
4810 12081 5.523438 TTACCTTGGGATTGTGTTTGTTC 57.477 39.130 0.00 0.00 0.00 3.18
4811 12082 3.642141 ACCTTGGGATTGTGTTTGTTCT 58.358 40.909 0.00 0.00 0.00 3.01
4812 12083 4.030216 ACCTTGGGATTGTGTTTGTTCTT 58.970 39.130 0.00 0.00 0.00 2.52
4813 12084 4.141959 ACCTTGGGATTGTGTTTGTTCTTG 60.142 41.667 0.00 0.00 0.00 3.02
4814 12085 4.099266 CCTTGGGATTGTGTTTGTTCTTGA 59.901 41.667 0.00 0.00 0.00 3.02
4815 12086 5.395103 CCTTGGGATTGTGTTTGTTCTTGAA 60.395 40.000 0.00 0.00 0.00 2.69
4816 12087 5.867903 TGGGATTGTGTTTGTTCTTGAAT 57.132 34.783 0.00 0.00 0.00 2.57
4817 12088 6.968263 TGGGATTGTGTTTGTTCTTGAATA 57.032 33.333 0.00 0.00 0.00 1.75
4818 12089 6.980593 TGGGATTGTGTTTGTTCTTGAATAG 58.019 36.000 0.00 0.00 0.00 1.73
4819 12090 6.549364 TGGGATTGTGTTTGTTCTTGAATAGT 59.451 34.615 0.00 0.00 0.00 2.12
4820 12091 7.721842 TGGGATTGTGTTTGTTCTTGAATAGTA 59.278 33.333 0.00 0.00 0.00 1.82
4821 12092 8.739972 GGGATTGTGTTTGTTCTTGAATAGTAT 58.260 33.333 0.00 0.00 0.00 2.12
4829 12100 6.763715 TGTTCTTGAATAGTATATGGGCCT 57.236 37.500 4.53 0.00 0.00 5.19
4833 12104 4.908601 TGAATAGTATATGGGCCTGTGG 57.091 45.455 4.53 0.00 0.00 4.17
4871 12142 5.675684 AACAAAACATCAAACACCCTTCT 57.324 34.783 0.00 0.00 0.00 2.85
4895 12166 1.023719 TCCTTCCCCTACCAGATCCA 58.976 55.000 0.00 0.00 0.00 3.41
4908 12179 8.428063 CCCTACCAGATCCATATCTATGATTTC 58.572 40.741 0.00 0.00 40.65 2.17
4934 12205 9.831737 CTGTTCATAAGTGGAAATAGACAAAAG 57.168 33.333 0.00 0.00 0.00 2.27
4938 12209 9.658799 TCATAAGTGGAAATAGACAAAAGAGAG 57.341 33.333 0.00 0.00 0.00 3.20
4939 12210 9.658799 CATAAGTGGAAATAGACAAAAGAGAGA 57.341 33.333 0.00 0.00 0.00 3.10
4941 12212 8.980481 AAGTGGAAATAGACAAAAGAGAGAAA 57.020 30.769 0.00 0.00 0.00 2.52
4943 12214 9.579932 AGTGGAAATAGACAAAAGAGAGAAAAT 57.420 29.630 0.00 0.00 0.00 1.82
5060 12331 8.534333 TTGTCAGAGCTACATACTAACTTTTG 57.466 34.615 0.00 0.00 0.00 2.44
5084 12356 8.761575 TGTGAAAAATTGATGCTATTTTCCTC 57.238 30.769 7.21 0.00 39.73 3.71
5143 12417 9.709495 AATTTTGCTATCAAATTTAGCTGTGAA 57.291 25.926 11.64 3.66 41.37 3.18
5225 12500 6.470557 AAGTTGTCATATTTGTTTGCATGC 57.529 33.333 11.82 11.82 0.00 4.06
5294 12571 9.201127 CATCTTAACATCATCATAACATCGACT 57.799 33.333 0.00 0.00 0.00 4.18
5298 12575 4.512944 ACATCATCATAACATCGACTTGCC 59.487 41.667 0.00 0.00 0.00 4.52
5301 12578 3.326836 TCATAACATCGACTTGCCACA 57.673 42.857 0.00 0.00 0.00 4.17
5328 12605 5.225642 ACCGCGTAGATATTTTAGCTTACC 58.774 41.667 4.92 0.00 0.00 2.85
5334 12611 7.115947 GCGTAGATATTTTAGCTTACCAACGAT 59.884 37.037 0.00 0.00 0.00 3.73
5353 12630 6.467723 ACGATTTTTGGCGTATCTGATATC 57.532 37.500 0.00 0.00 39.21 1.63
5391 12672 2.162681 CCATTGAACAGTGGGGAGTTC 58.837 52.381 8.21 0.00 34.88 3.01
5429 12710 9.685005 GTTTACAAGCTTTACGACATACATAAG 57.315 33.333 0.00 0.00 0.00 1.73
5433 12714 4.738740 AGCTTTACGACATACATAAGCGAC 59.261 41.667 0.00 0.00 41.97 5.19
5438 12719 5.596268 ACGACATACATAAGCGACGTATA 57.404 39.130 0.00 0.00 0.00 1.47
5447 12728 9.979270 ATACATAAGCGACGTATAAGTACATAC 57.021 33.333 0.00 0.00 0.00 2.39
5464 12745 3.676172 ACATACGTTTGGTGATGTACGTG 59.324 43.478 10.79 0.00 45.62 4.49
5466 12747 1.862201 ACGTTTGGTGATGTACGTGTG 59.138 47.619 0.00 0.00 44.56 3.82
5471 12752 1.137282 TGGTGATGTACGTGTGTGTGT 59.863 47.619 0.00 0.00 0.00 3.72
5472 12753 1.525197 GGTGATGTACGTGTGTGTGTG 59.475 52.381 0.00 0.00 0.00 3.82
5473 12754 2.198406 GTGATGTACGTGTGTGTGTGT 58.802 47.619 0.00 0.00 0.00 3.72
5474 12755 2.217847 GTGATGTACGTGTGTGTGTGTC 59.782 50.000 0.00 0.00 0.00 3.67
5475 12756 2.100087 TGATGTACGTGTGTGTGTGTCT 59.900 45.455 0.00 0.00 0.00 3.41
5476 12757 3.315749 TGATGTACGTGTGTGTGTGTCTA 59.684 43.478 0.00 0.00 0.00 2.59
5477 12758 3.994204 TGTACGTGTGTGTGTGTCTAT 57.006 42.857 0.00 0.00 0.00 1.98
5478 12759 5.181622 TGATGTACGTGTGTGTGTGTCTATA 59.818 40.000 0.00 0.00 0.00 1.31
5479 12760 5.632244 TGTACGTGTGTGTGTGTCTATAT 57.368 39.130 0.00 0.00 0.00 0.86
5480 12761 6.740411 TGTACGTGTGTGTGTGTCTATATA 57.260 37.500 0.00 0.00 0.00 0.86
5481 12762 7.324354 TGTACGTGTGTGTGTGTCTATATAT 57.676 36.000 0.00 0.00 0.00 0.86
5482 12763 8.436046 TGTACGTGTGTGTGTGTCTATATATA 57.564 34.615 0.00 0.00 0.00 0.86
5483 12764 9.059260 TGTACGTGTGTGTGTGTCTATATATAT 57.941 33.333 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.264045 TGAGGCATGTCGGATCACCA 61.264 55.000 0.00 0.00 35.59 4.17
15 16 1.069668 CTGATGAGGCATGTCGGATCA 59.930 52.381 12.11 12.11 0.00 2.92
57 58 1.583054 ACGTGAGAACCTTTGAGTGC 58.417 50.000 0.00 0.00 0.00 4.40
65 66 2.029828 CAGCTCAAGTACGTGAGAACCT 60.030 50.000 33.97 21.80 46.76 3.50
67 68 2.726760 CACAGCTCAAGTACGTGAGAAC 59.273 50.000 33.97 20.84 46.76 3.01
72 73 1.986378 GCTACACAGCTCAAGTACGTG 59.014 52.381 0.00 1.96 44.93 4.49
124 125 0.698818 AATCTGGTTGGTCTGGTCCC 59.301 55.000 0.00 0.00 0.00 4.46
126 127 3.077359 CAAGAATCTGGTTGGTCTGGTC 58.923 50.000 0.00 0.00 0.00 4.02
134 135 7.337689 TCTGAACATATTCCAAGAATCTGGTTG 59.662 37.037 7.38 0.62 37.74 3.77
154 155 7.478322 ACATGACTGCAATGATTATTCTGAAC 58.522 34.615 0.00 0.00 0.00 3.18
173 174 5.163814 GCAGACAAAGAATCAGGTACATGAC 60.164 44.000 13.18 0.88 30.46 3.06
197 199 3.538591 TGTGATTGCTGGAGATAAGCTG 58.461 45.455 0.00 0.00 41.42 4.24
198 200 3.920231 TGTGATTGCTGGAGATAAGCT 57.080 42.857 0.00 0.00 41.42 3.74
242 248 1.611043 GCGTTGCTTTCTCAAGATGC 58.389 50.000 0.00 0.00 30.57 3.91
252 258 4.244862 CATTCCAATTTAGGCGTTGCTTT 58.755 39.130 0.00 0.00 0.00 3.51
257 263 3.697166 AGTCCATTCCAATTTAGGCGTT 58.303 40.909 0.00 0.00 0.00 4.84
260 266 6.775594 ACTAAAGTCCATTCCAATTTAGGC 57.224 37.500 7.64 0.00 37.63 3.93
261 267 8.683615 GGTAACTAAAGTCCATTCCAATTTAGG 58.316 37.037 7.64 0.00 37.63 2.69
264 270 6.717997 ACGGTAACTAAAGTCCATTCCAATTT 59.282 34.615 0.00 0.00 0.00 1.82
305 311 7.503521 AGAAGCCAAATTTAGATAAGCTAGC 57.496 36.000 6.62 6.62 0.00 3.42
321 327 4.220382 CCATCACCAACATTAAGAAGCCAA 59.780 41.667 0.00 0.00 0.00 4.52
322 328 3.763360 CCATCACCAACATTAAGAAGCCA 59.237 43.478 0.00 0.00 0.00 4.75
323 329 3.763897 ACCATCACCAACATTAAGAAGCC 59.236 43.478 0.00 0.00 0.00 4.35
324 330 5.391312 AACCATCACCAACATTAAGAAGC 57.609 39.130 0.00 0.00 0.00 3.86
367 404 4.227300 AGCCTAACTGATATGTTCCAACCA 59.773 41.667 0.00 0.00 0.00 3.67
406 443 5.514279 CAAACTGTTGTGAATCTTCAGTCC 58.486 41.667 0.00 0.00 38.21 3.85
467 547 4.248859 CCACAGATGAAACTCACCAGTAG 58.751 47.826 0.00 0.00 30.14 2.57
469 549 2.439507 ACCACAGATGAAACTCACCAGT 59.560 45.455 0.00 0.00 0.00 4.00
470 550 3.131709 ACCACAGATGAAACTCACCAG 57.868 47.619 0.00 0.00 0.00 4.00
511 592 5.126396 AGCCTTTTTCAGTAAATGAGCAC 57.874 39.130 0.00 0.00 39.68 4.40
541 622 3.455619 AAAAATGAGCACGCTAGAACG 57.544 42.857 0.00 0.00 39.50 3.95
542 623 5.228012 GCATTAAAAATGAGCACGCTAGAAC 59.772 40.000 3.86 0.00 0.00 3.01
543 624 5.331902 GCATTAAAAATGAGCACGCTAGAA 58.668 37.500 3.86 0.00 0.00 2.10
544 625 4.201910 GGCATTAAAAATGAGCACGCTAGA 60.202 41.667 3.86 0.00 0.00 2.43
545 626 4.037690 GGCATTAAAAATGAGCACGCTAG 58.962 43.478 3.86 0.00 0.00 3.42
546 627 3.694072 AGGCATTAAAAATGAGCACGCTA 59.306 39.130 3.86 0.00 0.00 4.26
547 628 2.493278 AGGCATTAAAAATGAGCACGCT 59.507 40.909 3.86 0.00 0.00 5.07
548 629 2.879826 AGGCATTAAAAATGAGCACGC 58.120 42.857 3.86 0.00 0.00 5.34
549 630 5.163513 AGAAAGGCATTAAAAATGAGCACG 58.836 37.500 3.86 0.00 0.00 5.34
550 631 6.424812 ACAAGAAAGGCATTAAAAATGAGCAC 59.575 34.615 3.86 0.00 0.00 4.40
551 632 6.523840 ACAAGAAAGGCATTAAAAATGAGCA 58.476 32.000 3.86 0.00 0.00 4.26
552 633 6.870439 AGACAAGAAAGGCATTAAAAATGAGC 59.130 34.615 3.86 0.00 0.00 4.26
553 634 9.565213 CTAGACAAGAAAGGCATTAAAAATGAG 57.435 33.333 3.86 0.00 0.00 2.90
554 635 9.295825 TCTAGACAAGAAAGGCATTAAAAATGA 57.704 29.630 3.86 0.00 0.00 2.57
555 636 9.565213 CTCTAGACAAGAAAGGCATTAAAAATG 57.435 33.333 0.00 0.00 32.46 2.32
556 637 8.246871 GCTCTAGACAAGAAAGGCATTAAAAAT 58.753 33.333 0.00 0.00 32.46 1.82
582 676 6.017192 GGATTTTCTGGGTTTCCAAATGTTTG 60.017 38.462 0.00 0.00 43.51 2.93
583 677 6.061441 GGATTTTCTGGGTTTCCAAATGTTT 58.939 36.000 0.00 0.00 43.51 2.83
607 701 3.364565 CCACGTTACAAATTTCCCTCGTG 60.365 47.826 19.36 19.36 44.11 4.35
672 784 4.464008 TGCAGGAAGAAATCAACAAGTCT 58.536 39.130 0.00 0.00 0.00 3.24
683 795 0.106708 AGTCGTGCTGCAGGAAGAAA 59.893 50.000 23.98 1.85 30.04 2.52
684 796 0.106708 AAGTCGTGCTGCAGGAAGAA 59.893 50.000 23.98 7.24 30.04 2.52
694 806 5.526111 ACATTGTAACTTTGTAAGTCGTGCT 59.474 36.000 0.00 0.00 41.91 4.40
708 820 4.537135 ATCAGTCCGTGACATTGTAACT 57.463 40.909 2.82 0.00 38.28 2.24
709 821 5.408356 ACTATCAGTCCGTGACATTGTAAC 58.592 41.667 6.78 0.00 38.28 2.50
710 822 5.184287 TGACTATCAGTCCGTGACATTGTAA 59.816 40.000 3.97 0.00 44.44 2.41
711 823 4.703093 TGACTATCAGTCCGTGACATTGTA 59.297 41.667 3.97 0.00 44.44 2.41
712 824 3.509967 TGACTATCAGTCCGTGACATTGT 59.490 43.478 3.97 0.00 44.44 2.71
713 825 4.110036 TGACTATCAGTCCGTGACATTG 57.890 45.455 3.97 0.00 44.44 2.82
714 826 4.442052 CCATGACTATCAGTCCGTGACATT 60.442 45.833 0.00 0.00 44.44 2.71
715 827 3.068732 CCATGACTATCAGTCCGTGACAT 59.931 47.826 0.00 0.00 44.44 3.06
716 828 2.427095 CCATGACTATCAGTCCGTGACA 59.573 50.000 0.00 0.00 44.44 3.58
729 841 7.839705 AGGATGTAAAGTAGAAGACCATGACTA 59.160 37.037 0.00 0.00 0.00 2.59
755 906 3.278574 GGCAGTGCTGGTACATTTGATA 58.721 45.455 16.11 0.00 38.20 2.15
763 914 1.026718 GGATGTGGCAGTGCTGGTAC 61.027 60.000 16.11 9.82 0.00 3.34
768 928 0.963856 CATGTGGATGTGGCAGTGCT 60.964 55.000 16.11 0.00 0.00 4.40
769 929 1.509463 CATGTGGATGTGGCAGTGC 59.491 57.895 6.55 6.55 0.00 4.40
810 979 1.005867 GTGCTTTGGTGGCATGTGG 60.006 57.895 0.00 0.00 41.86 4.17
820 989 0.314935 GTCCATGTGGTGTGCTTTGG 59.685 55.000 0.00 0.00 36.34 3.28
840 1028 4.950050 ACATGAAGAGGATTCGTATGGAC 58.050 43.478 0.00 0.00 0.00 4.02
845 1033 4.956700 AGGAAGACATGAAGAGGATTCGTA 59.043 41.667 0.00 0.00 0.00 3.43
859 1047 0.990374 AGCTGAGCCAAGGAAGACAT 59.010 50.000 0.00 0.00 0.00 3.06
860 1048 0.035881 CAGCTGAGCCAAGGAAGACA 59.964 55.000 8.42 0.00 0.00 3.41
872 1060 7.011202 GCATATATATCAATGGTCACAGCTGAG 59.989 40.741 23.35 13.75 0.00 3.35
881 1079 9.499479 CTCCCTAATGCATATATATCAATGGTC 57.501 37.037 0.00 0.00 0.00 4.02
959 1487 2.164624 ACTACACCTTGCGCTAGAGAAG 59.835 50.000 20.66 8.92 0.00 2.85
983 1513 3.862642 GCCCATGATCGATCTACAGTTCC 60.863 52.174 25.02 4.01 0.00 3.62
1297 1843 6.787085 ATAAACAGAAAGAAGGTTGTCGAG 57.213 37.500 0.00 0.00 0.00 4.04
1315 1861 6.534634 AGGAGGCATGGATAGTGTTATAAAC 58.465 40.000 0.00 0.00 0.00 2.01
1319 1865 4.910304 AGAAGGAGGCATGGATAGTGTTAT 59.090 41.667 0.00 0.00 0.00 1.89
1320 1866 4.298626 AGAAGGAGGCATGGATAGTGTTA 58.701 43.478 0.00 0.00 0.00 2.41
1322 1868 2.769209 AGAAGGAGGCATGGATAGTGT 58.231 47.619 0.00 0.00 0.00 3.55
1373 3800 8.349983 GTGGTTTCAAAGAATAGTTGTACACAT 58.650 33.333 0.00 0.00 0.00 3.21
1377 3804 7.360361 CAGGTGGTTTCAAAGAATAGTTGTAC 58.640 38.462 0.00 0.00 0.00 2.90
1536 3969 7.447374 TGTATTTTTACAGTTGTGCATAGCT 57.553 32.000 0.00 0.00 0.00 3.32
1742 7034 0.740149 CTTGGCAGCAACACAGTTGA 59.260 50.000 13.58 0.00 0.00 3.18
1816 7113 2.634982 TTGATGCAGAAATCGGTTGC 57.365 45.000 0.00 0.00 38.30 4.17
1851 7151 2.519937 GCCATAGCTTGGGCCAATT 58.480 52.632 21.25 13.70 46.55 2.32
1852 7152 4.282881 GCCATAGCTTGGGCCAAT 57.717 55.556 21.25 8.69 46.55 3.16
1937 7246 4.569719 TTAGGAAAATGGGACTCACCTC 57.430 45.455 0.00 0.00 38.98 3.85
1948 7260 4.260375 CGCTTGGTCTCGATTAGGAAAATG 60.260 45.833 0.00 0.00 0.00 2.32
1949 7261 3.871594 CGCTTGGTCTCGATTAGGAAAAT 59.128 43.478 0.00 0.00 0.00 1.82
1969 7285 4.320491 CAAAATACGTAACAGCTGTACGC 58.680 43.478 30.94 20.15 40.46 4.42
1983 7302 7.042797 AGAATGGATGAATTCCCAAAATACG 57.957 36.000 7.42 0.00 44.77 3.06
1998 7320 8.737168 TGATCAGTAAAAGGTTAGAATGGATG 57.263 34.615 0.00 0.00 0.00 3.51
2001 7367 8.244113 GGTTTGATCAGTAAAAGGTTAGAATGG 58.756 37.037 0.00 0.00 0.00 3.16
2048 7414 1.199097 GACGTGTACAATTTGCCCTGG 59.801 52.381 0.00 0.00 0.00 4.45
2097 7463 1.134670 CAACCCTCCTCTAAGCCGAAG 60.135 57.143 0.00 0.00 0.00 3.79
2109 7475 2.278330 CCTGGCAAAGCAACCCTCC 61.278 63.158 0.00 0.00 0.00 4.30
2201 7579 4.935205 TCCCTTCATCAACATTTACGTCAG 59.065 41.667 0.00 0.00 0.00 3.51
2243 8416 0.701731 ATTCCCCGATTGTTGGTCCA 59.298 50.000 0.00 0.00 0.00 4.02
2244 8417 1.749063 GAATTCCCCGATTGTTGGTCC 59.251 52.381 0.00 0.00 0.00 4.46
2328 8504 2.040278 ACTCAGATTAGCAGCAACCCAA 59.960 45.455 0.00 0.00 0.00 4.12
2352 8528 0.991146 TATTCTGTTGGGCCTCTGCA 59.009 50.000 4.53 0.00 40.13 4.41
2451 9357 3.650281 TGGAAGCCATCTGAGCATTTA 57.350 42.857 0.00 0.00 0.00 1.40
2850 9756 1.614241 CCAACTGTAGACGGAGGGGG 61.614 65.000 0.00 0.00 0.00 5.40
2851 9757 0.613853 TCCAACTGTAGACGGAGGGG 60.614 60.000 0.00 0.00 0.00 4.79
2852 9758 1.263356 TTCCAACTGTAGACGGAGGG 58.737 55.000 0.00 0.00 0.00 4.30
2853 9759 2.233922 ACATTCCAACTGTAGACGGAGG 59.766 50.000 0.00 0.00 0.00 4.30
2854 9760 3.594603 ACATTCCAACTGTAGACGGAG 57.405 47.619 0.00 0.00 0.00 4.63
2855 9761 5.471556 TTTACATTCCAACTGTAGACGGA 57.528 39.130 0.00 0.00 31.17 4.69
2856 9762 6.017770 TGTTTTTACATTCCAACTGTAGACGG 60.018 38.462 0.00 0.00 31.17 4.79
2857 9763 6.849305 GTGTTTTTACATTCCAACTGTAGACG 59.151 38.462 0.00 0.00 31.17 4.18
2858 9764 6.849305 CGTGTTTTTACATTCCAACTGTAGAC 59.151 38.462 0.00 0.00 31.17 2.59
2859 9765 6.539464 ACGTGTTTTTACATTCCAACTGTAGA 59.461 34.615 0.00 0.00 31.17 2.59
2860 9766 6.631238 CACGTGTTTTTACATTCCAACTGTAG 59.369 38.462 7.58 0.00 31.17 2.74
2861 9767 6.487960 CACGTGTTTTTACATTCCAACTGTA 58.512 36.000 7.58 0.00 0.00 2.74
2862 9768 5.336744 CACGTGTTTTTACATTCCAACTGT 58.663 37.500 7.58 0.00 0.00 3.55
2863 9769 4.206200 GCACGTGTTTTTACATTCCAACTG 59.794 41.667 18.38 0.00 0.00 3.16
2864 9770 4.097286 AGCACGTGTTTTTACATTCCAACT 59.903 37.500 18.38 0.00 0.00 3.16
2865 9771 4.356289 AGCACGTGTTTTTACATTCCAAC 58.644 39.130 18.38 0.00 0.00 3.77
2866 9772 4.640789 AGCACGTGTTTTTACATTCCAA 57.359 36.364 18.38 0.00 0.00 3.53
2867 9773 5.950758 ATAGCACGTGTTTTTACATTCCA 57.049 34.783 18.38 0.00 0.00 3.53
2868 9774 7.631915 AAAATAGCACGTGTTTTTACATTCC 57.368 32.000 18.38 0.00 0.00 3.01
2869 9775 9.601971 TCTAAAATAGCACGTGTTTTTACATTC 57.398 29.630 18.38 0.00 32.27 2.67
2870 9776 9.953697 TTCTAAAATAGCACGTGTTTTTACATT 57.046 25.926 18.38 4.47 32.27 2.71
2919 9849 8.474831 ACAAAACCAAGTAGAAGTAGCAAAAAT 58.525 29.630 0.00 0.00 0.00 1.82
2920 9850 7.832769 ACAAAACCAAGTAGAAGTAGCAAAAA 58.167 30.769 0.00 0.00 0.00 1.94
2935 9865 4.321230 GCCTACCTGAATGACAAAACCAAG 60.321 45.833 0.00 0.00 0.00 3.61
2938 9868 3.421844 AGCCTACCTGAATGACAAAACC 58.578 45.455 0.00 0.00 0.00 3.27
2944 9874 8.398665 CAATTAACTTAAGCCTACCTGAATGAC 58.601 37.037 1.29 0.00 0.00 3.06
2952 9882 6.451064 ACATGCAATTAACTTAAGCCTACC 57.549 37.500 1.29 0.00 0.00 3.18
2970 9946 6.429624 TGCATCGACAAAATCTATAACATGC 58.570 36.000 0.00 0.00 34.74 4.06
3003 10233 7.451501 TGATGTCTGAAATTAACAAGATGCA 57.548 32.000 0.00 0.00 0.00 3.96
3026 10256 1.818060 TCCCGTTGAAGGCATTCATTG 59.182 47.619 15.42 10.08 44.75 2.82
3043 10273 1.630878 AGATCCCTTCACAACTGTCCC 59.369 52.381 0.00 0.00 0.00 4.46
3049 10279 2.134789 ATGGCAGATCCCTTCACAAC 57.865 50.000 0.00 0.00 0.00 3.32
3054 10284 3.008049 ACGGTATTATGGCAGATCCCTTC 59.992 47.826 0.00 0.00 0.00 3.46
3096 10326 2.037772 ACTCAGTCTTGCGAGGACATTT 59.962 45.455 0.00 0.00 36.29 2.32
3146 10379 0.746659 GCAGAGGCTGTGGTTTTGTT 59.253 50.000 14.04 0.00 36.96 2.83
3220 10469 5.591877 CCTGCAGGCACTAATCTCTTTTAAT 59.408 40.000 22.33 0.00 36.02 1.40
3234 10487 4.218417 CCCAATAATTATACCTGCAGGCAC 59.782 45.833 33.06 0.00 39.32 5.01
3360 10613 3.977326 AGGAGAAGACCTTGGTTCTTTCT 59.023 43.478 11.95 11.95 36.86 2.52
3586 10839 5.421056 ACTGCAACCTCATTGATGAATTGAT 59.579 36.000 16.16 0.00 41.23 2.57
3751 11004 6.070194 CCTTAAGTAATCTCCCCAAGACAGAA 60.070 42.308 0.97 0.00 36.65 3.02
3753 11006 5.425539 TCCTTAAGTAATCTCCCCAAGACAG 59.574 44.000 0.97 0.00 36.65 3.51
3764 11017 4.726825 TCCAGGGCAATCCTTAAGTAATCT 59.273 41.667 0.97 0.00 45.47 2.40
3923 11176 5.285651 ACAACGTGTGTTTGATTAATTGGG 58.714 37.500 0.00 0.00 37.01 4.12
3942 11195 1.333619 ACCTTGCACATTCGTGACAAC 59.666 47.619 0.00 0.00 46.80 3.32
3999 11252 1.063806 CTCTTTCCGTTCAGCTGTCG 58.936 55.000 14.67 18.37 0.00 4.35
4101 11354 1.839424 AAATAGCTTGACAGGCCCAC 58.161 50.000 5.85 0.00 0.00 4.61
4107 11360 4.836825 TCCTGGAGAAAATAGCTTGACAG 58.163 43.478 0.00 0.00 0.00 3.51
4146 11399 5.354234 CCTGTGAACTAACAATACCCATGAC 59.646 44.000 0.00 0.00 0.00 3.06
4256 11509 2.427506 GTCTCCACCTGTTTCATGGTC 58.572 52.381 0.00 0.00 33.75 4.02
4287 11540 0.796927 GTCTGTTTTGCCCGTAGAGC 59.203 55.000 0.00 0.00 0.00 4.09
4306 11559 3.611293 CGGATCTGACTGAGATGATTCCG 60.611 52.174 0.00 5.70 41.91 4.30
4320 11573 2.363680 GCTCTTCATTCCTCGGATCTGA 59.636 50.000 3.71 3.71 0.00 3.27
4409 11665 2.982744 CTGCACGTCGGCTCTCTCA 61.983 63.158 0.00 0.00 34.04 3.27
4512 11777 3.976942 CAGAAGTGAAACAAAAGCATCCG 59.023 43.478 0.00 0.00 41.43 4.18
4647 11915 5.924356 TCATGACGCTCTTTAATTATCCCA 58.076 37.500 0.00 0.00 0.00 4.37
4648 11916 8.723942 ATATCATGACGCTCTTTAATTATCCC 57.276 34.615 0.00 0.00 0.00 3.85
4661 11929 7.438160 TCGAAAAACTCATAATATCATGACGCT 59.562 33.333 0.00 0.00 31.67 5.07
4673 11941 9.226606 ACACAATCCTATTCGAAAAACTCATAA 57.773 29.630 0.00 0.00 0.00 1.90
4677 11945 7.860872 ACAAACACAATCCTATTCGAAAAACTC 59.139 33.333 0.00 0.00 0.00 3.01
4678 11946 7.712797 ACAAACACAATCCTATTCGAAAAACT 58.287 30.769 0.00 0.00 0.00 2.66
4679 11947 7.924103 ACAAACACAATCCTATTCGAAAAAC 57.076 32.000 0.00 0.00 0.00 2.43
4680 11948 8.934507 AAACAAACACAATCCTATTCGAAAAA 57.065 26.923 0.00 0.00 0.00 1.94
4685 11953 9.619316 TTTCATAAACAAACACAATCCTATTCG 57.381 29.630 0.00 0.00 0.00 3.34
4689 11957 9.743057 CAGTTTTCATAAACAAACACAATCCTA 57.257 29.630 0.00 0.00 44.88 2.94
4690 11958 8.257306 ACAGTTTTCATAAACAAACACAATCCT 58.743 29.630 0.00 0.00 44.88 3.24
4737 12008 7.646446 AAATGTCATCAACACAATGAACATG 57.354 32.000 0.00 0.00 41.75 3.21
4760 12031 5.779241 ATGGAGAAGGGTGTCTCATAAAA 57.221 39.130 4.71 0.00 45.03 1.52
4772 12043 4.526438 AGGTAAATGGAATGGAGAAGGG 57.474 45.455 0.00 0.00 0.00 3.95
4773 12044 4.646492 CCAAGGTAAATGGAATGGAGAAGG 59.354 45.833 0.00 0.00 40.56 3.46
4774 12045 4.646492 CCCAAGGTAAATGGAATGGAGAAG 59.354 45.833 0.00 0.00 40.56 2.85
4775 12046 4.293634 TCCCAAGGTAAATGGAATGGAGAA 59.706 41.667 0.00 0.00 40.56 2.87
4776 12047 3.855599 TCCCAAGGTAAATGGAATGGAGA 59.144 43.478 0.00 0.00 40.56 3.71
4777 12048 4.249638 TCCCAAGGTAAATGGAATGGAG 57.750 45.455 0.00 0.00 40.56 3.86
4778 12049 4.898014 ATCCCAAGGTAAATGGAATGGA 57.102 40.909 0.00 0.00 40.56 3.41
4779 12050 4.716287 ACAATCCCAAGGTAAATGGAATGG 59.284 41.667 0.00 0.00 40.56 3.16
4780 12051 5.187576 ACACAATCCCAAGGTAAATGGAATG 59.812 40.000 0.00 0.00 40.56 2.67
4781 12052 5.341169 ACACAATCCCAAGGTAAATGGAAT 58.659 37.500 0.00 0.00 40.56 3.01
4782 12053 4.746466 ACACAATCCCAAGGTAAATGGAA 58.254 39.130 0.00 0.00 40.56 3.53
4783 12054 4.396357 ACACAATCCCAAGGTAAATGGA 57.604 40.909 0.00 0.00 40.56 3.41
4784 12055 5.221621 ACAAACACAATCCCAAGGTAAATGG 60.222 40.000 0.00 0.00 37.71 3.16
4785 12056 5.852827 ACAAACACAATCCCAAGGTAAATG 58.147 37.500 0.00 0.00 0.00 2.32
4786 12057 6.326323 AGAACAAACACAATCCCAAGGTAAAT 59.674 34.615 0.00 0.00 0.00 1.40
4787 12058 5.659079 AGAACAAACACAATCCCAAGGTAAA 59.341 36.000 0.00 0.00 0.00 2.01
4788 12059 5.205056 AGAACAAACACAATCCCAAGGTAA 58.795 37.500 0.00 0.00 0.00 2.85
4789 12060 4.798882 AGAACAAACACAATCCCAAGGTA 58.201 39.130 0.00 0.00 0.00 3.08
4790 12061 3.642141 AGAACAAACACAATCCCAAGGT 58.358 40.909 0.00 0.00 0.00 3.50
4791 12062 4.099266 TCAAGAACAAACACAATCCCAAGG 59.901 41.667 0.00 0.00 0.00 3.61
4792 12063 5.261209 TCAAGAACAAACACAATCCCAAG 57.739 39.130 0.00 0.00 0.00 3.61
4793 12064 5.667539 TTCAAGAACAAACACAATCCCAA 57.332 34.783 0.00 0.00 0.00 4.12
4794 12065 5.867903 ATTCAAGAACAAACACAATCCCA 57.132 34.783 0.00 0.00 0.00 4.37
4795 12066 6.981722 ACTATTCAAGAACAAACACAATCCC 58.018 36.000 0.00 0.00 0.00 3.85
4800 12071 9.173021 CCCATATACTATTCAAGAACAAACACA 57.827 33.333 0.00 0.00 0.00 3.72
4801 12072 8.129211 GCCCATATACTATTCAAGAACAAACAC 58.871 37.037 0.00 0.00 0.00 3.32
4802 12073 7.284489 GGCCCATATACTATTCAAGAACAAACA 59.716 37.037 0.00 0.00 0.00 2.83
4803 12074 7.502561 AGGCCCATATACTATTCAAGAACAAAC 59.497 37.037 0.00 0.00 0.00 2.93
4804 12075 7.502226 CAGGCCCATATACTATTCAAGAACAAA 59.498 37.037 0.00 0.00 0.00 2.83
4805 12076 6.998074 CAGGCCCATATACTATTCAAGAACAA 59.002 38.462 0.00 0.00 0.00 2.83
4806 12077 6.101150 ACAGGCCCATATACTATTCAAGAACA 59.899 38.462 0.00 0.00 0.00 3.18
4807 12078 6.428159 CACAGGCCCATATACTATTCAAGAAC 59.572 42.308 0.00 0.00 0.00 3.01
4808 12079 6.465751 CCACAGGCCCATATACTATTCAAGAA 60.466 42.308 0.00 0.00 0.00 2.52
4809 12080 5.013079 CCACAGGCCCATATACTATTCAAGA 59.987 44.000 0.00 0.00 0.00 3.02
4810 12081 5.248640 CCACAGGCCCATATACTATTCAAG 58.751 45.833 0.00 0.00 0.00 3.02
4811 12082 4.042809 CCCACAGGCCCATATACTATTCAA 59.957 45.833 0.00 0.00 0.00 2.69
4812 12083 3.587061 CCCACAGGCCCATATACTATTCA 59.413 47.826 0.00 0.00 0.00 2.57
4813 12084 3.587506 ACCCACAGGCCCATATACTATTC 59.412 47.826 0.00 0.00 36.11 1.75
4814 12085 3.609162 ACCCACAGGCCCATATACTATT 58.391 45.455 0.00 0.00 36.11 1.73
4815 12086 3.291626 ACCCACAGGCCCATATACTAT 57.708 47.619 0.00 0.00 36.11 2.12
4816 12087 2.708861 CAACCCACAGGCCCATATACTA 59.291 50.000 0.00 0.00 36.11 1.82
4817 12088 1.494721 CAACCCACAGGCCCATATACT 59.505 52.381 0.00 0.00 36.11 2.12
4818 12089 1.981256 CAACCCACAGGCCCATATAC 58.019 55.000 0.00 0.00 36.11 1.47
4819 12090 0.184933 GCAACCCACAGGCCCATATA 59.815 55.000 0.00 0.00 36.11 0.86
4820 12091 1.076044 GCAACCCACAGGCCCATAT 60.076 57.895 0.00 0.00 36.11 1.78
4821 12092 2.086599 TTGCAACCCACAGGCCCATA 62.087 55.000 0.00 0.00 36.11 2.74
4822 12093 3.465218 TTGCAACCCACAGGCCCAT 62.465 57.895 0.00 0.00 36.11 4.00
4823 12094 4.149019 TTGCAACCCACAGGCCCA 62.149 61.111 0.00 0.00 36.11 5.36
4824 12095 3.615709 GTTGCAACCCACAGGCCC 61.616 66.667 19.15 0.00 36.11 5.80
4829 12100 2.203280 CTCCCGTTGCAACCCACA 60.203 61.111 23.42 4.64 0.00 4.17
4833 12104 0.741915 TGTTTTCTCCCGTTGCAACC 59.258 50.000 23.42 6.85 0.00 3.77
4871 12142 1.368203 TCTGGTAGGGGAAGGAATGGA 59.632 52.381 0.00 0.00 0.00 3.41
4908 12179 9.831737 CTTTTGTCTATTTCCACTTATGAACAG 57.168 33.333 0.00 0.00 0.00 3.16
4944 12215 8.840321 AGCATAACACTAAAAGCGATATCAAAT 58.160 29.630 3.12 0.00 0.00 2.32
4945 12216 8.208718 AGCATAACACTAAAAGCGATATCAAA 57.791 30.769 3.12 0.00 0.00 2.69
4946 12217 7.786178 AGCATAACACTAAAAGCGATATCAA 57.214 32.000 3.12 0.00 0.00 2.57
4947 12218 8.880878 TTAGCATAACACTAAAAGCGATATCA 57.119 30.769 3.12 0.00 0.00 2.15
5030 12301 8.314751 AGTTAGTATGTAGCTCTGACAAAATGT 58.685 33.333 0.00 0.00 0.00 2.71
5037 12308 7.813148 TCACAAAAGTTAGTATGTAGCTCTGAC 59.187 37.037 0.00 0.00 0.00 3.51
5040 12311 9.555727 TTTTCACAAAAGTTAGTATGTAGCTCT 57.444 29.630 0.00 0.00 0.00 4.09
5060 12331 8.992835 AGAGGAAAATAGCATCAATTTTTCAC 57.007 30.769 8.65 0.00 38.96 3.18
5118 12392 9.709495 TTTCACAGCTAAATTTGATAGCAAAAT 57.291 25.926 10.62 0.00 46.19 1.82
5202 12476 6.225318 AGCATGCAAACAAATATGACAACTT 58.775 32.000 21.98 0.00 0.00 2.66
5294 12571 1.777030 CTACGCGGTTGTTGTGGCAA 61.777 55.000 12.47 0.00 0.00 4.52
5298 12575 4.593597 AAATATCTACGCGGTTGTTGTG 57.406 40.909 12.47 0.00 0.00 3.33
5301 12578 5.114081 AGCTAAAATATCTACGCGGTTGTT 58.886 37.500 12.47 0.00 0.00 2.83
5328 12605 4.335082 TCAGATACGCCAAAAATCGTTG 57.665 40.909 0.00 0.00 39.79 4.10
5334 12611 5.680619 ACTGGATATCAGATACGCCAAAAA 58.319 37.500 12.67 0.00 46.18 1.94
5381 12658 0.680061 ACGAAGTCAGAACTCCCCAC 59.320 55.000 0.00 0.00 29.74 4.61
5391 12672 6.526566 AAGCTTGTAAACTAACGAAGTCAG 57.473 37.500 0.00 0.00 45.00 3.51
5438 12719 5.574055 CGTACATCACCAAACGTATGTACTT 59.426 40.000 24.03 0.00 46.42 2.24
5447 12728 1.862201 ACACACGTACATCACCAAACG 59.138 47.619 0.00 0.00 40.99 3.60
5455 12736 2.739292 AGACACACACACACGTACATC 58.261 47.619 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.